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AMReX-Microelectronics · Aug 22, 2024 · 8ae1cca · 8ae1cca
1 parent 199082b
commit 8ae1cca
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Showing 6 changed files with 18 additions and 20 deletions.
diff --git a/Source/Solver/Transport/NEGF/CNT.H b/Source/Solver/Transport/NEGF/CNT.H
@@ -78,8 +78,8 @@ class c_CNT : public c_NEGF_Common<ComplexType[NUM_MODES]>
         MatrixBlock<BlkType> &gr, const ComplexType EmU) final;
 
    public:
-
-    static int get_1D_site_id(int par_id_local_to_NS) {
+    static int get_1D_site_id(int par_id_local_to_NS)
+    {
         return static_cast<int>(
             amrex::Math::floor((par_id_local_to_NS - 1) / type_id[0]));
     }

diff --git a/Source/Solver/Transport/NEGF/Graphene.H b/Source/Solver/Transport/NEGF/Graphene.H
@@ -42,8 +42,8 @@ class c_Graphene : public c_NEGF_Common<ComplexType[NUM_MODES][NUM_MODES]>
     }
 
    public:
-
-    static int get_1D_site_id(int par_id_local_to_NS) {
+    static int get_1D_site_id(int par_id_local_to_NS)
+    {
         return static_cast<int>(
             amrex::Math::floor((par_id_local_to_NS - 1) / type_id[0]));
     }

diff --git a/Source/Solver/Transport/NEGF/NEGF_Common.cpp b/Source/Solver/Transport/NEGF/NEGF_Common.cpp
@@ -139,8 +139,8 @@ void c_NEGF_Common<T>::Define_MPISendCountAndDisp()
         std::fill(MPI_send_count.begin(), MPI_send_count.end(), 0);
         std::fill(MPI_send_disp.begin(), MPI_send_disp.end(), 0);
     }
-    MPI_Gather(&(min_local_site_id), 1, MPI_INT, MPI_send_disp.data(), 1, MPI_INT,
-               ParallelDescriptor::IOProcessorNumber(),
+    MPI_Gather(&(min_local_site_id), 1, MPI_INT, MPI_send_disp.data(), 1,
+               MPI_INT, ParallelDescriptor::IOProcessorNumber(),
                ParallelDescriptor::Communicator());
 
     MPI_Gather(&(num_local_field_sites), 1, MPI_INT, MPI_send_count.data(), 1,
@@ -197,7 +197,8 @@ void c_NEGF_Common<T>::Initialize_ChargeAtFieldSites()
         //    // bool full_match = true;
         //    // for(int i=0; i < num_local_field_sites; ++i)
         //    // {
-        //    //     if(h_n_curr_in_loc(i) != h_n_curr_in_glo(i+min_local_site_id)
+        //    //     if(h_n_curr_in_loc(i) !=
+        //    h_n_curr_in_glo(i+min_local_site_id)
         //    )
 
         //   //         full_match = false;
@@ -1189,8 +1190,7 @@ void c_NEGF_Common<T>::Initialize_NEGF_Params(
     const amrex::Real &initial_deposit_value,
     const std::string &negf_foldername_str)
 {
-    Set_KeyParams(name_str, id_counter, 
-                  initial_deposit_value);
+    Set_KeyParams(name_str, id_counter, initial_deposit_value);
 
     Define_FoldersAndFiles(negf_foldername_str);
 

diff --git a/Source/Solver/Transport/Nanostructure.H b/Source/Solver/Transport/Nanostructure.H
@@ -27,7 +27,7 @@ class c_Nanostructure
     amrex::MultiFab *p_mf_deposit = nullptr;
     const amrex::GpuArray<int, AMREX_SPACEDIM> *_n_cell;
     amrex::Vector<s_Position3D> pos_vec;
-    int particle_id_offset=0;
+    int particle_id_offset = 0;
 
     void Fill_AtomLocations();
     void Read_AtomLocations();

diff --git a/Source/Solver/Transport/Nanostructure.cpp b/Source/Solver/Transport/Nanostructure.cpp
@@ -97,7 +97,7 @@ void c_Nanostructure<NSType>::Fill_AtomLocations()
             ParticleType p;
             p.id() = ParticleType::NextID();
 
-            if(i==0) particle_id_offset = p.id()-1;
+            if (i == 0) particle_id_offset = p.id() - 1;
 
             p.cpu() = ParallelDescriptor::MyProc();
 
@@ -128,7 +128,7 @@ void c_Nanostructure<NSType>::Fill_AtomLocations()
     ParallelDescriptor::Bcast(&particle_id_offset, 1,
                               ParallelDescriptor::IOProcessorNumber());
 
-    Redistribute();  
+    Redistribute();
 }
 
 template <typename NSType>
@@ -378,8 +378,7 @@ void c_Nanostructure<NSType>::Deposit_AtomAttributeToMesh()
         int atoms_per_field_site = NSType::num_atoms_per_field_site;
         int SIO = NSType::min_local_site_id;
 
-        amrex::Real vol =
-            AMREX_D_TERM(dx[0], *dx[1], *dx[2]);
+        amrex::Real vol = AMREX_D_TERM(dx[0], *dx[1], *dx[2]);
 
         auto const &h_n_curr_in_loc = NSType::h_n_curr_in_loc_data.table();
 
@@ -460,7 +459,8 @@ void c_Nanostructure<NSType>::Obtain_PotentialAtSites()
 
                         int site_id = p_site_id[p];
 
-                        int atom_id_at_site = get_atom_id_at_site(par_id_local_to_NS);
+                        int atom_id_at_site =
+                            get_atom_id_at_site(par_id_local_to_NS);
 
                         int remainder =
                             atom_id_at_site % num_atoms_per_field_site;

diff --git a/Source/Utils/CodeUtils/ParticleStructure.H b/Source/Utils/CodeUtils/ParticleStructure.H
@@ -12,7 +12,7 @@
 
 // Extra Particle attributes in Struct-of-Arrays form
 // real: phi, charge
-// int: site_id 
+// int: site_id
 
 struct realPA  // real Particle Attribute
 {
@@ -28,7 +28,7 @@ struct intPA  // integer Particle Attribute
 {
     enum
     {
-        site_id,  //field_site_id local to nanostructure
+        site_id,  // field_site_id local to nanostructure
         NUM
     };
 };
@@ -104,9 +104,7 @@ class MyParIter
 
     const IntVector &get_site_id() const
     {
-        return this->GetStructOfArrays().GetIntData(
-            intPA::site_id);
+        return this->GetStructOfArrays().GetIntData(intPA::site_id);
     }
-
 };
 #endif