STYLE: Remove trailing whitespaces

ALive-research · Aug 17, 2023 · 87fdbdd · 87fdbdd
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diff --git a/ABLTemporalBoneSegmentation.s4ext b/ABLTemporalBoneSegmentation.s4ext
@@ -32,7 +32,7 @@ iconurl https://raw.githubusercontent.com/Auditory-Biophysics-Lab/Slicer-ABLTemp
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description Temporal bone deep-learning segmentation and pre-processing module.

diff --git a/ARCHIVE/ABC.s4ext b/ARCHIVE/ABC.s4ext
@@ -38,7 +38,7 @@ status Beta
 description Utah atlas based segmentation pipeline. Generates output images after bias correction and co-registration along with segmentation label image.
 
 # Space separated list of urls
-screenshoturls 
+screenshoturls
 
 # 0 or 1: Define if the extension should be enabled after its installation.
 enabled 1
diff --git a/ARCHIVE/AutoTract.s4ext b/ARCHIVE/AutoTract.s4ext
@@ -38,7 +38,7 @@ status beta
 description Automated tractography in diffusion tensor images and fiber tract classification using a deep learning approach
 
 # Space separated list of urls
-screenshoturls https://www.nitrc.org/project/screenshot.php?group_id=948&screenshot_id=934 
+screenshoturls https://www.nitrc.org/project/screenshot.php?group_id=948&screenshot_id=934
 
 # 0 or 1: Define if the extension should be enabled after its installation.
 enabled 1
diff --git a/ARCHIVE/CBC_3D_I2MConversion.s4ext b/ARCHIVE/CBC_3D_I2MConversion.s4ext
@@ -32,7 +32,7 @@ iconurl     http://wiki.slicer.org/slicerWiki/images/3/3e/I2M_logo.jpg
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status      
+status
 
 # One line stating what the module does
 description CBC 3D (CRTC's BCC & Compression) I2M (Image-To-Mesh) Conversion for Image Guided Therapy. The extension encapsulates two CLI modules: (1) Body Centric Cubic (BCC) Mesh Generation. This module generates a Body Centric Cubic (BCC) mesh from a labeled image. Initially the generated mesh is homogeneous, that means does not distinguish different tissues. Later the component specifies which tissue each tetrahedron belongs to. Each tissue is capable of automatically adjusting its resolution based on its geometric complexity and the predefined subdivision criterion. (2) Mesh Compression (MC). This module deforms an input tetrahedral mesh towards the boundaries of the input labeled image. Two point sets are extracted for the mesh deformation. The first (source point set) consists of the surface vertices of the input mesh. The second (target point set) consists of the surface edge points in the input labeled image. Then the input mesh is deformed by registering the source to the target point set using a Physics-Based Non-Rigid Registration method.

diff --git a/ARCHIVE/DTIAtlasFiberAnalyzer.s4ext b/ARCHIVE/DTIAtlasFiberAnalyzer.s4ext
@@ -29,7 +29,7 @@ category Diffusion
 iconurl http://www.nitrc.org/project/screenshot.php?group_id=403&screenshot_id=606
 
 # Extension development status
-status 
+status
 
 # One line stating what the module does
 description DTIAtlasFiberAnalyzer allows the user to study the behavior of water diffusion (using DTI data) along the length of the white matter fiber-tracts.

diff --git a/ARCHIVE/DTIPrep.s4ext b/ARCHIVE/DTIPrep.s4ext
@@ -32,7 +32,7 @@ iconurl    http://www.nitrc.org/project/screenshot.php?group_id=283&screenshot_i
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand beind?
-status      
+status
 
 # One line stating what the module does description This extension provides the tool DTIProcess integrated in Slicer
 

diff --git a/ARCHIVE/DTIProcess.s4ext b/ARCHIVE/DTIProcess.s4ext
@@ -32,7 +32,7 @@ iconurl    http://www.nitrc.org/project/screenshot.php?group_id=312&screenshot_i
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand beind?
-status      
+status
 
 # One line stating what the module does
 description This extension provides the tool DTIProcess integrated in Slicer

diff --git a/ARCHIVE/DeepInfer.s4ext b/ARCHIVE/DeepInfer.s4ext
@@ -18,7 +18,7 @@ depends     NA
 build_subdirectory .
 
 # homepage
-homepage   https://www.slicer.org/wiki/Documentation/Nightly/Modules/DeepInfer 
+homepage   https://www.slicer.org/wiki/Documentation/Nightly/Modules/DeepInfer
 
 contributors Alireza Mehrtash(UBC, BWH, SPL), Mehran Pesteie(UBC)
 
@@ -30,7 +30,7 @@ iconurl    https://www.slicer.org/w/images/a/a9/Deepinfer-256.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand beind?
-status      
+status
 
 # One line stating what the module does
 description Deep learning deployment toolkit for medical imaging.

diff --git a/ARCHIVE/FiberViewerLight.s4ext b/ARCHIVE/FiberViewerLight.s4ext
@@ -32,7 +32,7 @@ iconurl    http://www.nitrc.org/project/screenshot.php?group_id=534&screenshot_i
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status      
+status
 
 # One line stating what the module does
 description FiberViewerLight is an open-source software to visualize and edit fibers

diff --git a/ARCHIVE/GraphCutSegment.s4ext b/ARCHIVE/GraphCutSegment.s4ext
@@ -32,7 +32,7 @@ iconurl http://www.example.com/Slicer/Extensions/GraphCutSegment.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description Graph cut algorithm based segmentation tool.

diff --git a/ARCHIVE/IASEM.s4ext b/ARCHIVE/IASEM.s4ext
@@ -36,7 +36,7 @@ iconurl     http://raw.github.com/blowekamp/Slicer-IASEM/master/IASEM.png
 status      Experimental
 
 # One line stating what the module does
-description 
+description
 
 # Space separated list of urls
 screenshoturls http://www.slicer.org/slicerWiki/images/c/cd/IASEM-Screenshot1.png

diff --git a/ARCHIVE/LAScarSegmenter.s4ext b/ARCHIVE/LAScarSegmenter.s4ext
@@ -22,7 +22,7 @@ homepage     http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Ex
 
 # Firstname1 Lastname1 ([SubOrg1, ]Org1), Firstname2 Lastname2 ([SubOrg2, ]Org2)
 # For example: Jane Roe (Superware), John Doe (Lab1, Nowhere), Joe Bloggs (Noware)
-contributors Liangjia Zhu (SBU), Yi Gao (UAB), Josh Cates (Utah), Alan Morris (Utah), Danny Perry (Utah), Greg Gardner (Utah), Rob MacLeod (Utah), Allen Tannenbaum (SBU) 
+contributors Liangjia Zhu (SBU), Yi Gao (UAB), Josh Cates (Utah), Alan Morris (Utah), Danny Perry (Utah), Greg Gardner (Utah), Rob MacLeod (Utah), Allen Tannenbaum (SBU)
 
 # Match category in the xml description of the module (where it shows up in Modules menu)
 category    Segmentation

diff --git a/ARCHIVE/LASegmenter.s4ext b/ARCHIVE/LASegmenter.s4ext
@@ -22,7 +22,7 @@ homepage http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/
 
 # Firstname1 Lastname1 ([SubOrg1, ]Org1), Firstname2 Lastname2 ([SubOrg2, ]Org2)
 # For example: Jane Roe (Superware), John Doe (Lab1, Nowhere), Joe Bloggs (Noware)
-contributors Liangjia Zhu (SBU), Yi Gao (UAB), Josh Cates (Utah), Alan Morris (Utah), Danny Perry (Utah), Greg Gardner (Utah), Rob MacLeod (Utah), Allen Tannenbaum (SBU) 
+contributors Liangjia Zhu (SBU), Yi Gao (UAB), Josh Cates (Utah), Alan Morris (Utah), Danny Perry (Utah), Greg Gardner (Utah), Rob MacLeod (Utah), Allen Tannenbaum (SBU)
 
 # Match category in the xml description of the module (where it shows up in Modules menu)
 category Segmentation
@@ -32,7 +32,7 @@ iconurl http://www.slicer.org/slicerWiki/images/0/0b/LASegmenter.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This module performs segmentation of the left atrium from MR images

diff --git a/ARCHIVE/LesionSimulator.s4ext b/ARCHIVE/LesionSimulator.s4ext
@@ -32,7 +32,7 @@ iconurl https://www.slicer.org/w/images/d/d5/LesionSimulator-logo.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This extension offer a set of tools for brain lesion simulation, based on MRI images. At moment, the modules MS Lesion Simulator and MS Longitudinal Lesion Simulator are available, where it can simulate both baseline scan lesion volumes (given a lesion load) and longitudinal image simulations, respectively. In summary, a statistical lesion database is generated based on a set of manual lesion mark-ups, being non-linearly registered to MNI152 space (isotropic 1mm of voxel resolution). Using a small set of parameters (lesion load, lesion homogeneity, lesion intensity indenpendence and lesion variability), it is possible to generate a broad range of MS lesions patterns in multimodal MRI imaging techniques (at moment, T1, T2, T2-FLAIR, PD, DTI-FA and DTI-ADC images are provided). For more details about this project, please see the original paper (DOI: 10.1088/2057-1976/ab08fc ) and the wiki page.

diff --git a/ARCHIVE/LesionSpotlight.s4ext b/ARCHIVE/LesionSpotlight.s4ext
@@ -32,7 +32,7 @@ iconurl https://www.slicer.org/w/images/7/71/LesionSpotlight-logo.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This extension provides an recent image segmentation and enhancement approaches in order to highlight abnormal white matter voxels in magnetic resonance images. At moment, there are available the LS Segmenter module (specific for hyperintense Multiple Sclerosis lesion segmentation on T2-FLAIR images) and LS Contrast Enhancement Module (specific to increase the contrast of abnormal voxels of the same T2-FLAIR images). The LS Segmenter module implements a hyperintense T2-FLAIR lesion segmentation based on a hybrid segmentation algorithm, published by Senra Filho, A.C. (http://dx.doi.org/10.1007/s11517-017-1747-2). In addition, a simple implementation of another recent MS lesion segmentation algorithm is provided, being the method described in Cabezas M. et al. (http://dx.doi.org/10.1016/j.cmpb.2014.04.006)

diff --git a/ARCHIVE/LightWeightRobotIGT.s4ext b/ARCHIVE/LightWeightRobotIGT.s4ext
@@ -32,7 +32,7 @@ iconurl     http://www.slicer.org/slicerWiki/images/5/58/LightWeightRobotIGT.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status      
+status
 
 # One line stating what the module does
 description 3D Slicer module for communication between 3D Slicer and LightWeight robot.

diff --git a/ARCHIVE/LongitudinalPETCT.s4ext b/ARCHIVE/LongitudinalPETCT.s4ext
@@ -32,7 +32,7 @@ iconurl     http://www.slicer.org/slicerWiki/images/0/08/LongitudinalPETCTLogo.p
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand beind?
-status      
+status
 
 # One line stating what the module does
 description The purpose of the Longitudinal PET/CT Analysis module is to provide a user friendly Slicer interface for quantification of DICOM PET/CT image data by computing the standardized uptake value (SUV) based on bodyweight for different regions of interest and for different timepoints.

diff --git a/ARCHIVE/MABMIS.s4ext b/ARCHIVE/MABMIS.s4ext
@@ -32,7 +32,7 @@ iconurl     http://wiki.slicer.org/slicerWiki/images/e/e2/MABMIS_Icon.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand beind?
-status      
+status
 
 # One line stating what the module does
 description Multi-Atlas Based Group Segmentation

diff --git a/ARCHIVE/MFSDA.s4ext b/ARCHIVE/MFSDA.s4ext
@@ -7,7 +7,7 @@
 # This is source code manager
 scm git
 scmurl https://github.com/DCBIA-OrthoLab/MFSDA_Python.git
-scmrevision master 
+scmrevision master
 
 # list dependencies
 # - These should be names of other modules that have .s4ext files
@@ -22,7 +22,7 @@ homepage https://github.com/DCBIA-OrthoLab/MFSDA_Python#readme
 
 # Firstname1 Lastname1 ([SubOrg1, ]Org1), Firstname2 Lastname2 ([SubOrg2, ]Org2)
 # For example: Jane Roe (Superware), John Doe (Lab1, Nowhere), Joe Bloggs (Noware)
-contributors Mateo Lopez (University of North Carolina), Juan Carlos Prieto (University of North Carolina) 
+contributors Mateo Lopez (University of North Carolina), Juan Carlos Prieto (University of North Carolina)
 
 # Match category in the xml description of the module (where it shows up in Modules menu)
 category Shape Analysis
@@ -32,7 +32,7 @@ iconurl https://raw.githubusercontent.com/DCBIA-OrthoLab/MFSDA_Python/master/MFS
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description Modules for statistical shape analysis. A multivariate varying coefficient model is introduced to build the association between the multivariate shape measurements and demographic information and other clinical variables. Statistical inference, i.e., hypothesis testing, is also included in this package, which can be used in investigating whether some covariates of interest are significantly associated with the shape information. The hypothesis testing results are further used in clustering based analysis.

diff --git a/ARCHIVE/MultiLevelRegistration.s4ext b/ARCHIVE/MultiLevelRegistration.s4ext
@@ -22,7 +22,7 @@ homepage http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions
 
 # Firstname1 Lastname1 ([SubOrg1, ]Org1), Firstname2 Lastname2 ([SubOrg2, ]Org2)
 # For example: Jane Roe (Superware), John Doe (Lab1, Nowhere), Joe Bloggs (Noware)
-contributors Emily Hammond (University of Iowa), Jessica C. Sieren (University of Iowa) 
+contributors Emily Hammond (University of Iowa), Jessica C. Sieren (University of Iowa)
 
 # Match category in the xml description of the module (where it shows up in Modules menu)
 category Registration
@@ -32,7 +32,7 @@ iconurl https://github.com/emily-hammond/LongitudinalAnalysis/blob/master/MultiL
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description Perform rigid registration with increasingly smaller volumes of data defined by regions of interest focusing on a desired anatomy.

diff --git a/ARCHIVE/OpenCVExample.s4ext b/ARCHIVE/OpenCVExample.s4ext
@@ -38,7 +38,7 @@ status stable
 description This is an example of an extension that depends on the SlicerOpenCV extension
 
 # Space separated list of urls
-screenshoturls 
+screenshoturls
 
 # 0 or 1: Define if the extension should be enabled after its installation.
 enabled 1
diff --git a/ARCHIVE/ROBEXBrainExtraction.s4ext b/ARCHIVE/ROBEXBrainExtraction.s4ext
@@ -32,7 +32,7 @@ iconurl https://www.slicer.org/w/images/7/7a/ROBEXBrainExtraction-logo.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This extension aims to extract the brain from the skull. This tool was intensively tested with T1 MRI images, but the pipeline could be applied to any other structural MRI images, namely T2 and PD. This module is an adaptation of ROBEX brain extraction tool, given by Iglesias, J. E. et al (2011). Robust Brain Extraction Across Datasets and Comparison With Publicly Available Methods. IEEE Transactions on Medical Imaging, 30(9). DOI:10.1109/TMI.2011.2138152

diff --git a/ARCHIVE/ResampleDTIlogEuclidean.s4ext b/ARCHIVE/ResampleDTIlogEuclidean.s4ext
@@ -32,7 +32,7 @@ iconurl http://www.slicer.org/slicerWiki/images/1/13/ResampleDTIlogEuclidean-128
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description ResampleDTIlogEuclidean resamples Diffusion Tensor Images (DTI) in the log-euclidean framework. More information is available in the Insight Journal: http://www.insight-journal.org/browse/publication/742

diff --git a/ARCHIVE/SegmentationWizard.s4ext b/ARCHIVE/SegmentationWizard.s4ext
@@ -32,7 +32,7 @@ iconurl https://raw.githubusercontent.com/QTIM-Lab/SlicerSegmentationWizard/mast
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status Beta 
+status Beta
 
 # One line stating what the module does
 description This is a 3D model-based segmentation tool for 3D Slicer. It includes utilities for calculating subtraction maps and thresholding intensities.

diff --git a/ARCHIVE/ShapeQuantifier.s4ext b/ARCHIVE/ShapeQuantifier.s4ext
@@ -32,7 +32,7 @@ iconurl https://raw.githubusercontent.com/jbvimort/ShapeQuantifier/master/ShapeQ
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This extension contains different modules that allow the user to either quantify differences between two models or make measurements on the shape of a model.

diff --git a/ARCHIVE/SlicerAstro.s4ext b/ARCHIVE/SlicerAstro.s4ext
@@ -32,7 +32,7 @@ iconurl https://raw.githubusercontent.com/Punzo/SlicerAstro/master/SlicerAstroIc
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description Extension for enabling Astronomical (HI) visualization in Slicer

diff --git a/ARCHIVE/exStone.s4ext b/ARCHIVE/exStone.s4ext
@@ -32,7 +32,7 @@ iconurl https://www.slicer.org/w/images/e/e7/Urinary_calculi.png
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and  automaticly extract the  slice's parameters  in any angle of the  urinary stones volume   as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export  parameters to the Excel file.

diff --git a/ARCHIVE/lapdMouseBrowser.s4ext b/ARCHIVE/lapdMouseBrowser.s4ext
@@ -32,7 +32,7 @@ iconurl     https://raw.githubusercontent.com/lapdMouse/Slicer-lapdMouseBrowser/
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status      
+status
 
 # One line stating what the module does
 description Connect to the lapdMouse archive, browse the collection, download and visualize data files.

diff --git a/AblationPlanner.s4ext b/AblationPlanner.s4ext
@@ -12,7 +12,7 @@ scmrevision main
 # list dependencies
 # - These should be names of other modules that have .s4ext files
 # - The dependencies will be built first
-depends ModelToModelDistance 
+depends ModelToModelDistance
 
 # Inner build directory (default is ".")
 build_subdirectory .
@@ -32,10 +32,10 @@ iconurl https://github.com/naterex23/SlicerAblationPlanner/raw/main/AblationPlan
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
-description This extension enables the user to place virtual ablation profiles and evaluate a theoretical margins associated with these profiles.  
+description This extension enables the user to place virtual ablation profiles and evaluate a theoretical margins associated with these profiles.
 
 # Space separated list of urls
 screenshoturls https://github.com/naterex23/SlicerAblationPlanner/raw/main/Screenshots/combined_probes.png https://github.com/naterex23/SlicerAblationPlanner/raw/main/Screenshots/fiducial_placement.png https://github.com/naterex23/SlicerAblationPlanner/raw/main/Screenshots/margin_colors.png

diff --git a/AirwaySegmentation.s4ext b/AirwaySegmentation.s4ext
@@ -32,7 +32,7 @@ iconurl     https://raw.githubusercontent.com/Slicer/SlicerAirwaySegmentation/ma
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status      
+status
 
 # One line stating what the module does
 description Automated airway segmentation in chest CT images

diff --git a/AnglePlanesExtension.s4ext b/AnglePlanesExtension.s4ext
@@ -32,7 +32,7 @@ iconurl https://raw.githubusercontent.com/DCBIA-OrthoLab/AnglePlanes-Extension/m
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This Module is used to calculate the angle between two planes by using the normals. The user gets the choice to use two planes which are already implemented on Slicer or they can define a plane by using landmarks (at least 3 landmarks). Plane can also be saved to be reused for other models.

diff --git a/AnomalousFiltersExtension.s4ext b/AnomalousFiltersExtension.s4ext
@@ -32,7 +32,7 @@ iconurl https://www.slicer.org/slicerWiki/images/8/89/AnomalousDiffusionExtensio
 
 # Give people an idea what to expect from this code
 #  - Is it just a test or something you stand behind?
-status 
+status
 
 # One line stating what the module does
 description This extension aims to provide several approaches in order to apply the anomalous spatial filters on medical images. The methods provided here are numerical solution of the generalized anomalous diffusion proposed by Constantino Tsallis, which, in other words, provide a numerical solution to the porous media equation (Fokker-Planck anomalous heat equation). At the moment, the Modules available are suppose to be used on MRI volumes namely T1, T2, T2-FLAIR and PD weighted images, and diffusion weighted images (DWI and DTI). Future developments will add new functionalities in order to attenuate image noise in other imaging modalities. More details could be found in the wiki page.
-Original file line number
+Diff line change
@@ Expand Up @@
     # Give people an idea what to expect from this code
     #  - Is it just a test or something you stand beind?
-    status
+    status
     # One line stating what the module does description This extension provides the tool DTIProcess integrated in Slicer
@@ Expand Down @@