add phi @ cnaf run instructions

.gitignore

@@ -31,7 +31,6 @@ doc/src/*.pre
 [Dd]ebug/
 [Rr]elease/
 x64/
-build/
 [Bb]in/
 [Oo]bj/
 

Makefile

@@ -51,11 +51,8 @@ cnaf-intel: OPT_REPORT += -vec-report -opt-report 3
 cnaf-intel: all
 
 cnaf-phi: COMPILER = mpiicpc
-cnaf-phi: BOOST_LIB = /shared/software/project/aladyn/boost_1_60_0_MIC/lib
-cnaf-phi: BOOST_INC = /shared/software/project/aladyn/boost_1_60_0_MIC/include
-cnaf-phi: OPT = -O3 -std=c++11 -mmic -DUSE_BOOST
+cnaf-phi: OPT = -O3 -std=c++11 -mmic 
 cnaf-phi: RPATH = -Wl,-rpath=/shared/software/compilers/intel/compilers_and_libraries_2016.0.109/linux/compiler/lib/intel64_lin_mic 
-cnaf-phi: LIB = -lboost_filesystem -lboost_system
 cnaf-phi: all
 
 brew: boost

build/cnaf.phi.sh

@@ -5,7 +5,8 @@
 module purge
 module load compilers/gcc-4.8.2
 module load compilers/intel-parallel-studio-2016
-source /shared/software/compilers/intel/bin/compilervars.sh intel64
+source /shared/software/compilers/intel/compilers_and_libraries_2016/linux/bin/compilervars.sh intel64
+source /shared/software/compilers/intel/compilers_and_libraries_2016/linux/mpi/intel64/bin/mpivars.sh
 
 make cnaf-phi
 

run/cnaf_phi.txt

@@ -0,0 +1,27 @@
+## Edit your .bashrc file on the mic with at least these settings
+
+export LD_LIBRARY_PATH=/lib64:${LD_LIBRARY_PATH}
+export I_MPI_MIC_PROXY_PATH=/lib64
+export PATH=/bin:$PATH
+export I_MPI_MIC=enable
+
+
+
+
+## copy the executable and the input file to your mic home dir
+
+scp piccante.exe mic0:~/
+scp inputPiccante.json mic0:~/
+
+
+
+
+## run the executable from the mic
+
+[hpc-200-06-15-mic0]$ mpirun -n N ./piccante.exe
+
+(where N is the number of mic core you want to use)
+
+
+
+