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freeze env.yml
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@zhuwq0
zhuwq0 authored Nov 27, 2024
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10 changes: 5 additions & 5 deletions docs/README.md
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Expand Up @@ -40,25 +40,25 @@ unzip test_data.zip

- For mseed format:
```
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/mseed.csv --data_dir=test_data/mseed --format=mseed --amplitude --response_xml=test_data/stations.xml --batch_size=1 --sampling_rate=100 --plot_figure
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/mseed.csv --data_dir=test_data/mseed --format=mseed --amplitude --response_xml=test_data/stations.xml --batch_size=1 --sampling_rate=100
```
```
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/mseed2.csv --data_dir=test_data/mseed --format=mseed --amplitude --response_xml=test_data/stations.xml --batch_size=1 --sampling_rate=100 --plot_figure
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/mseed2.csv --data_dir=test_data/mseed --format=mseed --amplitude --response_xml=test_data/stations.xml --batch_size=1 --sampling_rate=100
```

- For sac format:
```
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/sac.csv --data_dir=test_data/sac --format=sac --batch_size=1 --plot_figure
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/sac.csv --data_dir=test_data/sac --format=sac --batch_size=1
```

- For numpy format:
```
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/npz.csv --data_dir=test_data/npz --format=numpy --plot_figure
python phasenet/predict.py --model=model/190703-214543 --data_list=test_data/npz.csv --data_dir=test_data/npz --format=numpy
```

- For hdf5 format:
```
python phasenet/predict.py --model=model/190703-214543 --hdf5_file=test_data/data.h5 --hdf5_group=data --format=hdf5 --plot_figure
python phasenet/predict.py --model=model/190703-214543 --hdf5_file=test_data/data.h5 --hdf5_group=data --format=hdf5
```

- For a seismic array (used by [QuakeFlow](https://github.com/wayneweiqiang/QuakeFlow)):
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202 changes: 189 additions & 13 deletions env.yml
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@@ -1,17 +1,193 @@
name: phasenet
channels:
- defaults
- conda-forge
- defaults
dependencies:
- python
- numpy
- scipy
- matplotlib
- pandas
- scikit-learn
- tqdm
- obspy
- uvicorn
- fastapi
- tensorflow
- keras
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _tflow_select=2.3.0=mkl
- abseil-cpp=20211102.0=hd4dd3e8_0
- absl-py=2.1.0=py310h06a4308_0
- aiohappyeyeballs=2.4.0=py310h06a4308_0
- aiohttp=3.10.5=py310h5eee18b_0
- aiosignal=1.2.0=pyhd3eb1b0_0
- annotated-types=0.6.0=py310h06a4308_0
- anyio=4.6.2=py310h06a4308_0
- astunparse=1.6.3=py_0
- async-timeout=4.0.3=py310h06a4308_0
- attrs=24.2.0=py310h06a4308_0
- blas=1.0=mkl
- blinker=1.6.2=py310h06a4308_0
- bottleneck=1.4.2=py310ha9d4c09_0
- brotli=1.0.9=h5eee18b_8
- brotli-bin=1.0.9=h5eee18b_8
- brotli-python=1.0.9=py310h6a678d5_8
- bzip2=1.0.8=h5eee18b_6
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2024.9.24=h06a4308_0
- cachetools=5.3.3=py310h06a4308_0
- certifi=2024.8.30=py310h06a4308_0
- cffi=1.17.1=py310h1fdaa30_0
- charset-normalizer=3.3.2=pyhd3eb1b0_0
- click=8.1.7=py310h06a4308_0
- contourpy=1.3.1=py310hdb19cb5_0
- cryptography=41.0.3=py310h130f0dd_0
- cycler=0.11.0=pyhd3eb1b0_0
- cyrus-sasl=2.1.28=h9c0eb46_1
- dbus=1.13.18=hb2f20db_0
- decorator=5.1.1=pyhd3eb1b0_0
- exceptiongroup=1.2.0=py310h06a4308_0
- expat=2.6.3=h6a678d5_0
- fastapi=0.112.2=py310h06a4308_0
- flatbuffers=24.3.25=h6a678d5_0
- fontconfig=2.14.1=h4c34cd2_2
- fonttools=4.51.0=py310h5eee18b_0
- freetype=2.12.1=h4a9f257_0
- frozenlist=1.5.0=py310h5eee18b_0
- gast=0.4.0=pyhd3eb1b0_0
- giflib=5.2.2=h5eee18b_0
- glib=2.78.4=h6a678d5_0
- glib-tools=2.78.4=h6a678d5_0
- google-auth=2.29.0=py310h06a4308_0
- google-auth-oauthlib=0.4.4=pyhd3eb1b0_0
- google-pasta=0.2.0=pyhd3eb1b0_0
- greenlet=3.0.1=py310h6a678d5_0
- grpc-cpp=1.46.1=h33aed49_1
- grpcio=1.42.0=py310hce63b2e_0
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- h11=0.14.0=py310h06a4308_0
- h5py=3.12.1=py310hc0802c4_0
- hdf5=1.12.1=h70be1eb_2
- icu=58.2=he6710b0_3
- idna=3.7=py310h06a4308_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- joblib=1.4.2=py310h06a4308_0
- jpeg=9e=h5eee18b_3
- keras=2.11.0=py310h06a4308_0
- keras-preprocessing=1.1.2=pyhd3eb1b0_0
- kiwisolver=1.4.4=py310h6a678d5_0
- krb5=1.20.1=h568e23c_1
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.40=h12ee557_0
- lerc=3.0=h295c915_0
- libbrotlicommon=1.0.9=h5eee18b_8
- libbrotlidec=1.0.9=h5eee18b_8
- libbrotlienc=1.0.9=h5eee18b_8
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcups=2.4.2=ha637b67_0
- libcurl=8.2.1=h91b91d3_0
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=h7f8727e_1
- libffi=3.4.4=h6a678d5_1
- libgcc=14.2.0=h77fa898_1
- libgcc-ng=14.2.0=h69a702a_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libglib=2.78.4=hdc74915_0
- libgomp=14.2.0=h77fa898_1
- libiconv=1.16=h5eee18b_3
- libllvm14=14.0.6=hecde1de_4
- libnghttp2=1.52.0=ha637b67_1
- libpng=1.6.39=h5eee18b_0
- libpq=12.15=h37d81fd_1
- libprotobuf=3.20.3=he621ea3_0
- libssh2=1.10.0=h37d81fd_2
- libstdcxx-ng=11.2.0=h1234567_1
- libtiff=4.5.1=h6a678d5_0
- libuuid=1.41.5=h5eee18b_0
- libwebp-base=1.3.2=h5eee18b_1
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=h5eee18b_1
- libxml2=2.10.4=hcbfbd50_0
- libxslt=1.1.37=h2085143_0
- lxml=5.2.1=py310hdbbb534_0
- lz4-c=1.9.4=h6a678d5_1
- markdown=3.4.1=py310h06a4308_0
- markupsafe=2.1.3=py310h5eee18b_0
- matplotlib=3.8.4=py310h06a4308_0
- matplotlib-base=3.8.4=py310h1128e8f_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py310h5eee18b_1
- mkl_fft=1.3.11=py310h5eee18b_0
- mkl_random=1.2.8=py310h1128e8f_0
- multidict=6.1.0=py310h5eee18b_0
- mysql=5.7.24=he378463_2
- ncurses=6.4=h6a678d5_0
- numexpr=2.10.1=py310h3c60e43_0
- numpy=1.26.4=py310h5f9d8c6_0
- numpy-base=1.26.4=py310hb5e798b_0
- oauthlib=3.2.2=py310h06a4308_0
- obspy=1.4.1=py310h5b4e0ec_3
- openjpeg=2.5.2=he7f1fd0_0
- openssl=1.1.1w=h7f8727e_0
- opt_einsum=3.3.0=pyhd3eb1b0_1
- packaging=24.1=py310h06a4308_0
- pandas=2.1.4=py310h1128e8f_0
- pcre2=10.42=hebb0a14_1
- pillow=11.0.0=py310hfdbf927_0
- pip=24.2=py310h06a4308_0
- ply=3.11=py310h06a4308_0
- propcache=0.2.0=py310h5eee18b_0
- protobuf=3.20.3=py310h6a678d5_0
- pyasn1=0.4.8=pyhd3eb1b0_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.21=pyhd3eb1b0_0
- pydantic=2.8.2=py310h06a4308_0
- pydantic-core=2.20.1=py310hb02cf49_0
- pyjwt=2.9.0=py310h06a4308_0
- pyopenssl=23.2.0=py310h06a4308_0
- pyparsing=3.0.9=py310h06a4308_0
- pyqt=5.15.10=py310h6a678d5_0
- pyqt5-sip=12.13.0=py310h5eee18b_0
- pysocks=1.7.1=py310h06a4308_0
- python=3.10.13=h7a1cb2a_0
- python-dateutil=2.9.0post0=py310h06a4308_2
- python-flatbuffers=24.3.25=py310h06a4308_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- python_abi=3.10=2_cp310
- pytz=2024.1=py310h06a4308_0
- qt-main=5.15.2=h5b8104b_9
- re2=2022.04.01=h295c915_0
- readline=8.2=h5eee18b_0
- requests=2.32.3=py310h06a4308_1
- requests-oauthlib=2.0.0=py310h06a4308_0
- rsa=4.7.2=pyhd3eb1b0_1
- scikit-learn=1.5.1=py310h1128e8f_0
- scipy=1.14.1=py310h5f9d8c6_0
- setuptools=75.1.0=py310h06a4308_0
- sip=6.7.12=py310h6a678d5_0
- six=1.16.0=pyhd3eb1b0_1
- snappy=1.2.1=h6a678d5_0
- sniffio=1.3.0=py310h06a4308_0
- sqlalchemy=1.4.51=py310h5eee18b_0
- sqlite=3.45.3=h5eee18b_0
- starlette=0.38.2=py310h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tensorboard=2.11.0=py310h06a4308_0
- tensorboard-data-server=0.6.1=py310h52d8a92_0
- tensorboard-plugin-wit=1.8.1=py310h06a4308_0
- tensorflow=2.11.0=mkl_py310hb40ee82_0
- tensorflow-base=2.11.0=mkl_py310he5f8e37_0
- tensorflow-estimator=2.11.0=py310h06a4308_0
- termcolor=2.1.0=py310h06a4308_0
- threadpoolctl=3.5.0=py310h2f386ee_0
- tk=8.6.14=h39e8969_0
- tomli=2.0.1=py310h06a4308_0
- tornado=6.4.1=py310h5eee18b_0
- tqdm=4.66.5=py310h2f386ee_0
- typing-extensions=4.11.0=py310h06a4308_0
- typing_extensions=4.11.0=py310h06a4308_0
- tzdata=2024b=h04d1e81_0
- unicodedata2=15.1.0=py310h5eee18b_0
- urllib3=2.2.3=py310h06a4308_0
- uvicorn=0.30.6=py310h06a4308_0
- werkzeug=3.0.6=py310h06a4308_0
- wheel=0.44.0=py310h06a4308_0
- wrapt=1.14.1=py310h5eee18b_0
- xz=5.4.6=h5eee18b_1
- yarl=1.18.0=py310h5eee18b_0
- zlib=1.2.13=h5eee18b_1
- zstd=1.5.6=hc292b87_0

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