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Test openmpi5 #159

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Test openmpi5 #159

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787e1f9
Add amami after uploading mule to accessnri channel
rbeucher Jan 20, 2025
cae6b5f
Try new env 25c with hh5 openmpi
rbeucher Jan 20, 2025
0d52bda
Add hh5 back to storage flags
rbeucher Jan 20, 2025
78f2f51
Test openmpi 5
rbeucher Jan 21, 2025
037d2c0
Increase mem
rbeucher Jan 21, 2025
42c8d8e
Test
rbeucher Jan 21, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/build.yml
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Expand Up @@ -22,4 +22,4 @@ jobs:
eval $( grep ADMIN_DIR $SCRIPT_DIR/install_config.sh )
eval $( grep JOB_LOG_DIR $SCRIPT_DIR/install_config.sh )
cd $JOB_LOG_DIR
qsub -N build_${{ inputs.environment }} -lncpus=1,mem=20GB,walltime=2:00:00,jobfs=50GB,storage=gdata/xp65+scratch/iq82+gdata/tm70 -v SCRIPT_DIR,CONDA_ENVIRONMENT=${{ inputs.environment }} -P iq82 -q copyq -Wblock=true -Wumask=037 "${SCRIPT_DIR}"/build.sh
qsub -N build_${{ inputs.environment }} -lncpus=1,mem=40GB,walltime=2:00:00,jobfs=50GB,storage=gdata/xp65+scratch/iq82+gdata/tm70 -v SCRIPT_DIR,CONDA_ENVIRONMENT=${{ inputs.environment }} -P iq82 -q copyq -Wblock=true -Wumask=037 "${SCRIPT_DIR}"/build.sh
8 changes: 3 additions & 5 deletions environments/analysis3/config.sh
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Expand Up @@ -8,16 +8,14 @@
### outside_files_to_copy

### Optional config for custom deploy script
export VERSION_TO_MODIFY=25.01c
export VERSION_TO_MODIFY=25.01f
export STABLE_VERSION=24.12
export UNSTABLE_VERSION=25.01c
export UNSTABLE_VERSION=25.01f

### Version settings
export ENVIRONMENT=analysis3
export FULLENV="${ENVIRONMENT}-${VERSION_TO_MODIFY}"

declare -a rpms_to_remove=( "openssh-clients" "openssh-server" "openssh" )
declare -a replace_from_apps=( "ucx/1.15.0" "openmpi/4.1.7" )
declare -a replace_from_apps=( "ucx/1.15.0" "openmpi/5.0.5" )
declare -a outside_commands_to_include=( "pbs_tmrsh" "ssh" )
declare -a outside_files_to_copy=( "/g/data/xp65/public/apps/openmpi/4.1.6" )
declare -a replace_with_external=( "/g/data/xp65/public/apps/openmpi/4.1.6" )
5 changes: 2 additions & 3 deletions environments/analysis3/environment.yml
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Expand Up @@ -3,8 +3,6 @@ channels:
- conda-forge
- accessnri
- nodefaults
variables:
CARTOPY_USER_BACKGROUNDS: /g/data/xp65/public/apps/cartopy-data/backgrounds
dependencies:
# SPEC0 packages
- cartopy
Expand All @@ -31,6 +29,7 @@ dependencies:
- xarray

# Remaining packages
- accessnri::amami
- accessnri::benchcab
- accessnri::access-nri-intake==1.0.0
- aiohttp
Expand Down Expand Up @@ -162,7 +161,7 @@ dependencies:
- numpy_groupies
- objgraph ### Unlisted dependency of greenlet
- odc-geo
- openmpi==4.1.6
- openmpi==5.0.5
- opencv
- pandas
- panel
Expand Down
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