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Use local stashvar_cmip6.py with CASA variables instead of the environment module #3

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Use local stashvar_cmip6.py with CASA variables instead of the environment module #3

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9fd3cc5
Use local stashvar_cmip6.py with CASA variables instead of the enviro…
tammasloughran Mar 25, 2024
3debf00
Corrected stashvar.py to stashvar_cmip6.py
tammasloughran Mar 25, 2024
b5ed707
Update stashvar_cmip6.py
tammasloughran May 20, 2024
c622aca
Added nitrogen variables to stashvar_cmip6..py
tammasloughran Jun 6, 2024
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7 changes: 5 additions & 2 deletions ACCESS_Archiver.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -102,6 +102,8 @@ echo -e "\n---- Setting up jobs ----"

#---- um2nc parallel job ----#
cp $here/subroutines/run_um2nc.py $here/tmp/$loc_exp/run_um2nc.py
cp $here/subroutines/um2netcdf4.py $here/tmp/$loc_exp/um2netcdf4.py # TFL: use local stashvars
cp $here/subroutines/stashvar_cmip6.py $here/tmp/$loc_exp/stashvar_cmip6.py
#
cat << EOF > $here/tmp/$loc_exp/job_um2nc.qsub.sh
#!/bin/bash
Expand All @@ -117,7 +119,8 @@ module use /g/data/hh5/public/modules
module use ~access/modules
module load cdo
module load nco
module load pythonlib/um2netcdf4/2.0
#module load pythonlib/um2netcdf4/2.0 # TFL replaced by local um2netcdf4.py
module load conda/analysis3-23.10
set -a
ncpus=\$PBS_NCPUS
here=$here
Expand All @@ -139,7 +142,7 @@ echo "arch dir: $arch_dir"
echo "local exp: $loc_exp"
echo "access version: $access_version"

python -W ignore $here/tmp/$loc_exp/run_um2nc.py
python3 -W ignore $here/tmp/$loc_exp/run_um2nc.py

EOF
if [[ $access_version != om2 ]]; then
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