updated package down and running-nonmem vignette. #82
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master, workflow_test] | |
| pull_request: | |
| branches: [main, master, workflow_test] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: '4.3'} | |
| - {os: ubuntu-latest, r: '4.2'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - name: Download mocked binaries | |
| run: | | |
| mkdir -p /usr/local/bin | |
| cd /tmp | |
| gh release download "sinfo/v0.2.1" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/ | |
| tar -xvf /usr/local/bin/sinfo_Linux_x86_64.tar.gz | |
| mv ./sinfo /usr/local/bin/sinfo | |
| chmod 755 /usr/local/bin/sinfo | |
| gh release download "sacct/v0.2.0" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/ | |
| tar -xvf /usr/local/bin/sacct_Linux_x86_64.tar.gz | |
| mv ./sacct /usr/local/bin/sacct | |
| chmod 755 /usr/local/bin/sacct | |
| gh release download "squeue/v0.2.0" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/ | |
| tar -xvf /usr/local/bin/squeue_Linux_x86_64.tar.gz | |
| mv ./squeue /usr/local/bin/squeue | |
| chmod 755 /usr/local/bin/squeue | |
| gh release download "sbatch/v0.2.0" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/ | |
| tar -xvf /usr/local/bin/sbatch_Linux_x86_64.tar.gz | |
| mv ./sbatch /usr/local/bin/sbatch | |
| chmod 755 /usr/local/bin/sbatch | |
| echo "/usr/local/bin" >> $GITHUB_PATH | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Check mocked binaries work in different step | |
| run: | | |
| Rscript -e 'if (!requireNamespace("processx", quietly = TRUE)) install.packages("processx"); processx::run("sinfo", args = c("--format", "%P,%c,%m"),)' | |
| Rscript -e 'processx::run("sacct", args = "--json")' | |
| Rscript -e 'processx::run("squeue", args = "--version")' | |
| Rscript -e 'processx::run("squeue", args = "--json")' | |
| Rscript -e 'processx::run("sbatch", args = "path_to_file")' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| metrumresearchgroup/mrgmisc | |
| metrumresearchgroup/nmrec | |
| metrumresearchgroup/bbr | |
| any::rcmdcheck | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |