artbio ❤️ Eco #56
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artbio ❤️ Eco #56
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Thank you so much Christophe! Hope all is doing well on you side! @ColineRoyaux can you check it and move to galaxyecology repo? |
bgruening
reviewed
Apr 23, 2021
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| {"version": "0.1", "tests": [{"id": "functional.test_toolbox.TestForTool_xls2tab_R.test_tool_000000", "has_data": true, "data": {"tool_id": "xls2tab_R", "tool_version": "0.2", "test_index": 0, "time_seconds": 21.413196802139282, "inputs": {"input1": {"src": "hda", "id": "2891970512fa2d5a"}, "sheet": "data"}, "job": {"command_line": "Rscript '/home/chris/.planemo/planemo_tmp_nu4hmbtd/xls2tab.R' '/tmp/tmp1jl_0anm/files/d/1/5/dataset_d15219d6-57f9-4127-ad92-0ac554b5bc65.dat' 'data' '/tmp/tmp1jl_0anm/files/7/1/4/dataset_7142118d-bc03-4a86-a84c-82f86d23b201.dat'", "command_version": "", "create_time": "2021-04-22T22:49:16.884029", "exit_code": 0, "external_id": "24349", "galaxy_version": "20.01", "history_id": "2891970512fa2d5a", "id": "5729865256bc2525", "inputs": {"input1": {"id": "2891970512fa2d5a", "src": "hda", "uuid": "d15219d6-57f9-4127-ad92-0ac554b5bc65"}}, "job_messages": [], "job_metrics": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "outputs": {"output": {"id": "5729865256bc2525", "src": "hda", "uuid": "7142118d-bc03-4a86-a84c-82f86d23b201"}}, "params": {"__input_ext": "\"xlsx\"", "chromInfo": "\"/home/chris/galaxy-planemo/galaxy/tool-data/shared/ucsc/chrom/?.len\"", "dbkey": "\"?\"", "sheet": "\"data\""}, "state": "ok", "stderr": "", "stdout": "", "tool_id": "xls2tab_R", "tool_stderr": "", "tool_stdout": "", "update_time": "2021-04-22T22:49:24.281312", "user_email": "[email protected]"}, "status": "success"}}, {"id": "functional.test_toolbox.TestForTool_xls2tab_R.test_tool_000001", "has_data": true, "data": {"tool_id": "xls2tab_R", "tool_version": "0.2", "test_index": 1, "time_seconds": 27.53522253036499, "inputs": {"input1": {"src": "hda", "id": "54f2a3a23292eb07"}, "sheet": "Feuille 1"}, "job": {"command_line": "Rscript '/home/chris/.planemo/planemo_tmp_nu4hmbtd/xls2tab.R' '/tmp/tmp1jl_0anm/files/9/c/f/dataset_9cf4ef19-a19e-4ba8-a1e1-7214cd3ebdcc.dat' 'Feuille 1' '/tmp/tmp1jl_0anm/files/7/c/b/dataset_7cb8e062-2359-4556-9fe7-7d4fc74f1e5d.dat'", "command_version": "", "create_time": "2021-04-22T22:49:44.509101", "exit_code": 0, "external_id": "25389", "galaxy_version": "20.01", "history_id": "5729865256bc2525", "id": "8155e4b4bf1581ff", "inputs": {"input1": {"id": "54f2a3a23292eb07", "src": "hda", "uuid": "9cf4ef19-a19e-4ba8-a1e1-7214cd3ebdcc"}}, "job_messages": [], "job_metrics": [], "job_stderr": "", "job_stdout": "", "model_class": "Job", "outputs": {"output": {"id": "8155e4b4bf1581ff", "src": "hda", "uuid": "7cb8e062-2359-4556-9fe7-7d4fc74f1e5d"}}, "params": {"__input_ext": "\"xlsx\"", "chromInfo": "\"/home/chris/galaxy-planemo/galaxy/tool-data/shared/ucsc/chrom/?.len\"", "dbkey": "\"?\"", "sheet": "\"Feuille 1\""}, "state": "ok", "stderr": "", "stdout": "", "tool_id": "xls2tab_R", "tool_stderr": "", "tool_stdout": "", "update_time": "2021-04-22T22:49:51.844537", "user_email": "[email protected]"}, "status": "success"}}], "summary": {"num_tests": 2, "num_failures": 0, "num_errors": 0, "num_skips": 0}, "exit_code": 0} | |||
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@drosofff can you remove those files and add them to the .gitignore fle please?
| args = commandArgs(trailingOnly = TRUE) | ||
| sheet <- read_excel(args[1],sheet = args[2]) | ||
| write.table(sheet,"out.tabular", sep = "\t", row.names = FALSE) |
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can we also get rid of the quotes for every cell or are they needed?
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Yes... I had the same idea. I guess it is up to @yvanlebras. We can leave with it
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I just asked him, ok to remove the quotes :)
This was referenced Oct 29, 2024
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Please find a modest contribution to the
xls2tab_Rtool