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Deduplicate control TAs in ChIP-seq input JSON #588

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merged 2 commits into from
Jan 28, 2025

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clarabakker
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For ChIP-seq sets with 2+ identical control tagAlign files, replace multi-file control list with a one-item list.

For example:
s2_input_files['chip.ctl_tas'] = ['fileA', 'fileA', 'fileA'] will be replaced with s2_input_files['chip.ctl_tas'] = ['fileA']

Files are also renamed accordingly. No changes made in the case that some but not all control files are identical.

@clarabakker clarabakker requested a review from aschroed January 28, 2025 20:30
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Looks good.

@clarabakker clarabakker merged commit 36077d0 into master Jan 28, 2025
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@clarabakker clarabakker deleted the chip_duplicate_ctls branch January 30, 2025 19:19
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2 participants