Merge pull request #64 from 2i2c-org/csc-e

Switch to using `csc evaluate`
2i2c-org · Nov 26, 2024 · a0000e5 · a0000e5
2 parents a857da3 + b1afe76
commit a0000e5
Showing 1 changed file with 8 additions and 5 deletions.
diff --git a/helm-charts/app/common.values.yaml b/helm-charts/app/common.values.yaml
@@ -41,11 +41,14 @@ frx-challenges:
       # Image is built from https://github.com/janelia-cellmap/cellmap-segmentation-challenge
       EVALUATOR_DOCKER_IMAGE: quay.io/2i2c/cellmap-segmentation-challenge-evaluator:797a892d742d
       EVALUATOR_DOCKER_CMD:
-        - python
-        - -m
-        - cellmap_segmentation_challenge.evaluate
-        - --truth-path
-        - /opt/gt.zarr
+        - "csc"
+        - "evaluate"
+        - "--truth_path"
+        - "/opt/gt.zarr"
+        - "--submission_path"
+        - "{submission_path}"
+        - "--result_file"
+        - "{result_path}"
       EVALUATOR_DOCKER_EXTRA_BINDS:
         - /opt/state/truth/gt.zarr:/opt/gt.zarr:ro
       EVALUATOR_DOCKER_CONTAINER_CPU_LIMIT: 1.5