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Switch to using csc evaluate
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Matches what is shown in the README
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yuvipanda committed Nov 26, 2024
1 parent 9e342c2 commit 9c0116e
Showing 1 changed file with 8 additions and 5 deletions.
13 changes: 8 additions & 5 deletions helm-charts/app/common.values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -41,11 +41,14 @@ frx-challenges:
# Image is built from https://github.com/janelia-cellmap/cellmap-segmentation-challenge
EVALUATOR_DOCKER_IMAGE: quay.io/2i2c/cellmap-segmentation-challenge-evaluator:797a892d742d
EVALUATOR_DOCKER_CMD:
- python
- -m
- cellmap_segmentation_challenge.evaluate
- --truth-path
- /opt/gt.zarr
- 'csc'
- 'evaluate'
- '--truth_path'
- '/opt/gt.zarr'
- '--submission_path'
- '{submission_path}'
- '--result_file'
- '{result_path}'
EVALUATOR_DOCKER_EXTRA_BINDS:
- /opt/state/truth/gt.zarr:/opt/gt.zarr:ro
EVALUATOR_DOCKER_CONTAINER_CPU_LIMIT: 1.5
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