From c4ec715496af52c1f3d63d2e26ff93d20517edbe Mon Sep 17 00:00:00 2001 From: Zach Skidmore Date: Tue, 21 May 2019 09:12:16 -0500 Subject: [PATCH] added tidyverse and nanostringdiff --- Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index ee3e4e6..03c1db1 100644 --- a/Dockerfile +++ b/Dockerfile @@ -33,5 +33,5 @@ RUN make install # install R packages RUN R --vanilla -e 'install.packages(c("devtools", "BiocManager"), repos="http://cran.us.r-project.org")' -RUN R --vanilla -e 'BiocManager::install(c("biomaRt", "copynumber", "GenVisR", "fgsea", "deseq2", "EBSeq", "BSgenome.Hsapiens.UCSC.hg19", "BSgenome.Hsapiens.UCSC.hg38", "TxDb.Hsapiens.UCSC.hg19.knownGene", "TxDb.Hsapiens.UCSC.hg38.knownGene", "org.Hs.eg.db"))' -RUN R --vanilla -e 'install.packages(c("ggplot2", "data.table", "sequenza", "dplyr", "reshape2", "tidyr", "viridis", "cowplot", "ggalluvial", "msigdbr", "ggdendro", "gridExtra", "deconstructSigs"), repos = "http://cran.us.r-project.org")' +RUN R --vanilla -e 'BiocManager::install(c("biomaRt", "copynumber", "GenVisR", "fgsea", "deseq2", "EBSeq", "BSgenome.Hsapiens.UCSC.hg19", "BSgenome.Hsapiens.UCSC.hg38", "TxDb.Hsapiens.UCSC.hg19.knownGene", "TxDb.Hsapiens.UCSC.hg38.knownGene", "org.Hs.eg.db", "NanoStringDiff"))' +RUN R --vanilla -e 'install.packages(c("ggplot2", "data.table", "sequenza", "dplyr", "reshape2", "tidyr", "viridis", "cowplot", "ggalluvial", "msigdbr", "ggdendro", "gridExtra", "deconstructSigs", "tidyverse", ), repos = "http://cran.us.r-project.org")'