From 08764bbc504cb4ccc1fa7c656d6a9ab2ff1d4d52 Mon Sep 17 00:00:00 2001 From: fgomez02 Date: Tue, 14 May 2019 15:27:04 -0500 Subject: [PATCH] Update Dockerfile --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index ee3e4e6..b09c16a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -34,4 +34,4 @@ RUN make install # install R packages RUN R --vanilla -e 'install.packages(c("devtools", "BiocManager"), repos="http://cran.us.r-project.org")' RUN R --vanilla -e 'BiocManager::install(c("biomaRt", "copynumber", "GenVisR", "fgsea", "deseq2", "EBSeq", "BSgenome.Hsapiens.UCSC.hg19", "BSgenome.Hsapiens.UCSC.hg38", "TxDb.Hsapiens.UCSC.hg19.knownGene", "TxDb.Hsapiens.UCSC.hg38.knownGene", "org.Hs.eg.db"))' -RUN R --vanilla -e 'install.packages(c("ggplot2", "data.table", "sequenza", "dplyr", "reshape2", "tidyr", "viridis", "cowplot", "ggalluvial", "msigdbr", "ggdendro", "gridExtra", "deconstructSigs"), repos = "http://cran.us.r-project.org")' +RUN R --vanilla -e 'install.packages(c("ggplot2", "data.table", "sequenza", "dplyr", "reshape2", "tidyr", "viridis", "cowplot", "ggalluvial", "msigdbr", "ggdendro", "gridExtra", "deconstructSigs","splitstackshape"), repos = "http://cran.us.r-project.org")'