DESCRIPTION

Package: immunedeconv
Title: Methods for immune cell deconvolution
Description: Collection of methods for immune cell deconvolution from bulk RNA-seq samples
Version: 2.0.0
Authors@R: person("Gregor", "Sturm", role=c("aut", "cre"), email="mail@gregor-sturm.de")
biocViews:
Depends:
    R (>= 3.4),
    EPIC
Imports:
    dplyr (>= 0.7),
    magrittr (>= 1.5),
    readr (>= 1.1),
    readxl (>= 1.0),
    testit (>= 0.7),
    tibble (>= 1.4.2),
    methods (>= 3.4),
    data.tree (>= 0.7),
    limSolve (>= 1.5.5.1),
    e1071 (>= 1.6),
    parallel (>= 3.4),
    BiocGenerics,
    rlang,
    BiocParallel,
    preprocessCore,
    Biobase,
    GSVA,
    sva,
    GSEABase,
    xCell,
    MCPcounter
Suggests:
    testthat,
    knitr,
    rmarkdown,
    pkgdown,
    devtools
Remotes:
    dviraran/xCell,
    GfellerLab/EPIC,
    ebecht/MCPcounter/Source
VignetteBuilder: knitr
License: BSD_3_clause + file LICENSE.md
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
LazyData: true
URL: https://grst.github.io/immunedeconv, https://github.com/grst/immunedeconv
BugReports: https://github.com/grst/immunedeconv/issues
RoxygenNote: 6.1.1