10.3 DBSCAN.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 201,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import numpy as np\n",
    "from PIL import Image\n",
    "img = Image.open('data/handwriting.png')\n",
    "#img\n",
    "#imgarr =  np.array(img)\n",
    "#imgarr.shape\n",
    "#imgarr\n",
    "img2 = img.rotate(-90).convert(\"L\")\n",
    "imgarr = np.array(img2) "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 202,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "from sklearn.preprocessing import binarize\n",
    "imagedata = np.where(1- binarize(imgarr, 0) == 1)\n",
    "#imagedata = np.where(1- binarize(imgarr, 0) == 1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 203,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "image/png": 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sbhZfhzo3V8zb3Fzxd50gwN5/5Ke//1Lmv2HqBvOhp1nMbN7MPgvgSQAf6Fn/XjN71Mwe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\nQnQABXMhhOgACuZCCNEB/h9OFH+jkueUAwAAAABJRU5ErkJggg==\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0xabd9f98>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import matplotlib.pyplot as plt\n",
    "plt.scatter(imagedata[0], imagedata[1], s = 100, c = 'red', label = 'Cluster 1')\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 205,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "#imagedata"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 207,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "X =np.column_stack([imagedata[0],imagedata[1]])\n",
    "#X"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 208,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "from sklearn.cluster import KMeans\n",
    "\n",
    "kmeans = KMeans(n_clusters = 2, init = 'k-means++', random_state = 42)\n",
    "y_kmeans = kmeans.fit_predict(X)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 210,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "#y_kmeans"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 213,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array([[ 14.53900709,   6.65957447],\n",
       "       [ 12.98630137,  18.2739726 ]])"
      ]
     },
     "execution_count": 213,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "kmeans.cluster_centers_"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 214,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<matplotlib.collections.PathCollection at 0xabe77b8>"
      ]
     },
     "execution_count": 214,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "plt.scatter(X[y_kmeans == 0, 0], X[y_kmeans == 0, 1], s = 100, c = 'red', label = 'Cluster 1')\n",
    "plt.scatter(X[y_kmeans == 1, 0], X[y_kmeans == 1, 1], s = 100, c = 'blue', label = 'Cluster 2')\n",
    "plt.scatter(kmeans.cluster_centers_[:,0], kmeans.cluster_centers_[:,1], s = 100, c = 'yellow', label = 'Centroid')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 215,
   "metadata": {
    "collapsed": false,
    "scrolled": true
   },
   "outputs": [
    {
     "data": {
      "image/png": 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bBuuvDh33t/fQzbzfxtk3GO/D429HRO4c0bXRd3vGkELG3HW2tTrmUp7GlWsB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\nAABJRU5ErkJggg==\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0xab8b780>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 217,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "from sklearn.cluster import DBSCAN\n",
    "#?DBSCAN\n",
    "dbs = DBSCAN(eps=1, min_samples=3)\n",
    "y_dbs = dbs.fit_predict(X)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 218,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<matplotlib.collections.PathCollection at 0xaaa53c8>"
      ]
     },
     "execution_count": 218,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "plt.scatter(X[y_dbs == 0, 0], X[y_dbs == 0, 1], s = 100, c = 'red', label = 'Cluster 1')\n",
    "plt.scatter(X[y_dbs == 1, 0], X[y_dbs == 1, 1], s = 100, c = 'blue', label = 'Cluster 2')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 219,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "image/png": 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      "text/plain": [
       "<matplotlib.figure.Figure at 0xabd4978>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "plt.show()"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.6.0"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}