train.py

"""Training GCN model on citation graphs."""
import argparse
import time

import mxnet as mx
import numpy as np
from gcn import GCN
from mxnet import gluon

import dgl
from dgl.data import CiteseerGraphDataset, CoraGraphDataset, PubmedGraphDataset

# from gcn_mp import GCN
# from gcn_spmv import GCN


def evaluate(model, features, labels, mask):
    pred = model(features).argmax(axis=1)
    accuracy = ((pred == labels) * mask).sum() / mask.sum().asscalar()
    return accuracy.asscalar()


def main(args):
    # load and preprocess dataset
    if args.dataset == "cora":
        data = CoraGraphDataset()
    elif args.dataset == "citeseer":
        data = CiteseerGraphDataset()
    elif args.dataset == "pubmed":
        data = PubmedGraphDataset()
    else:
        raise ValueError("Unknown dataset: {}".format(args.dataset))

    g = data[0]
    if args.gpu < 0:
        cuda = False
        ctx = mx.cpu(0)
    else:
        cuda = True
        ctx = mx.gpu(args.gpu)
        g = g.int().to(ctx)

    features = g.ndata["feat"]
    labels = mx.nd.array(g.ndata["label"], dtype="float32", ctx=ctx)
    train_mask = g.ndata["train_mask"]
    val_mask = g.ndata["val_mask"]
    test_mask = g.ndata["test_mask"]
    in_feats = features.shape[1]
    n_classes = data.num_labels
    n_edges = data.graph.number_of_edges()
    print(
        """----Data statistics------'
      #Edges %d
      #Classes %d
      #Train samples %d
      #Val samples %d
      #Test samples %d"""
        % (
            n_edges,
            n_classes,
            train_mask.sum().asscalar(),
            val_mask.sum().asscalar(),
            test_mask.sum().asscalar(),
        )
    )

    # add self loop
    if args.self_loop:
        g = dgl.remove_self_loop(g)
        g = dgl.add_self_loop(g)
    # normalization
    degs = g.in_degrees().astype("float32")
    norm = mx.nd.power(degs, -0.5)
    if cuda:
        norm = norm.as_in_context(ctx)
    g.ndata["norm"] = mx.nd.expand_dims(norm, 1)

    model = GCN(
        g,
        in_feats,
        args.n_hidden,
        n_classes,
        args.n_layers,
        mx.nd.relu,
        args.dropout,
    )
    model.initialize(ctx=ctx)
    n_train_samples = train_mask.sum().asscalar()
    loss_fcn = gluon.loss.SoftmaxCELoss()

    # use optimizer
    print(model.collect_params())
    trainer = gluon.Trainer(
        model.collect_params(),
        "adam",
        {"learning_rate": args.lr, "wd": args.weight_decay},
    )

    # initialize graph
    dur = []
    for epoch in range(args.n_epochs):
        if epoch >= 3:
            t0 = time.time()
        # forward
        with mx.autograd.record():
            pred = model(features)
            loss = loss_fcn(pred, labels, mx.nd.expand_dims(train_mask, 1))
            loss = loss.sum() / n_train_samples

        loss.backward()
        trainer.step(batch_size=1)

        if epoch >= 3:
            loss.asscalar()
            dur.append(time.time() - t0)
            acc = evaluate(model, features, labels, val_mask)
            print(
                "Epoch {:05d} | Time(s) {:.4f} | Loss {:.4f} | Accuracy {:.4f} | "
                "ETputs(KTEPS) {:.2f}".format(
                    epoch,
                    np.mean(dur),
                    loss.asscalar(),
                    acc,
                    n_edges / np.mean(dur) / 1000,
                )
            )

    # test set accuracy
    acc = evaluate(model, features, labels, test_mask)
    print("Test accuracy {:.2%}".format(acc))


if __name__ == "__main__":
    parser = argparse.ArgumentParser(description="GCN")
    parser.add_argument(
        "--dataset",
        type=str,
        default="cora",
        help="Dataset name ('cora', 'citeseer', 'pubmed').",
    )
    parser.add_argument(
        "--dropout", type=float, default=0.5, help="dropout probability"
    )
    parser.add_argument("--gpu", type=int, default=-1, help="gpu")
    parser.add_argument("--lr", type=float, default=3e-2, help="learning rate")
    parser.add_argument(
        "--n-epochs", type=int, default=200, help="number of training epochs"
    )
    parser.add_argument(
        "--n-hidden", type=int, default=16, help="number of hidden gcn units"
    )
    parser.add_argument(
        "--n-layers", type=int, default=1, help="number of hidden gcn layers"
    )
    parser.add_argument(
        "--weight-decay", type=float, default=5e-4, help="Weight for L2 loss"
    )
    parser.add_argument(
        "--self-loop",
        action="store_true",
        help="graph self-loop (default=False)",
    )
    parser.set_defaults(self_loop=False)
    args = parser.parse_args()

    print(args)

    main(args)