From 4fee7c5db3cc9af7202ada94f05d7f2b9d33db97 Mon Sep 17 00:00:00 2001 From: riasc Date: Wed, 16 Aug 2023 12:39:04 -0500 Subject: [PATCH] misxup dna/rna --- workflow/rules/align.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/rules/align.smk b/workflow/rules/align.smk index 1188e5d..bba3524 100644 --- a/workflow/rules/align.smk +++ b/workflow/rules/align.smk @@ -170,8 +170,8 @@ rule realign: rg="results/{sample}/rnaseq/reads/{group}_readgroups.txt", idx = multiext("resources/refs/bwa/genome", ".amb", ".ann", ".bwt", ".pac", ".sa"), output: - bam="results/{sample}/dnaseq/align/{group}_final_BWA.bam", - idx="results/{sample}/dnaseq/align/{group}_final_BWA.bam.bai" + bam="results/{sample}/rnaseq/align/{group}_final_BWA.bam", + idx="results/{sample}/rnaseq/align/{group}_final_BWA.bam.bai" conda: "../envs/basic.yml" log: