diff --git a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
index 2a6ca09a..bace7f2d 100644
--- a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
+++ b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
@@ -328,7 +328,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 28-Jul-2024 at 23:35:28 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 28-Jul-2024 at 23:38:39 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -429,7 +429,7 @@ <h2>Summary</h2>
     </table>
   </body>
   <footer>
-    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.10.14&#34;, &#34;Platform&#34;: &#34;Linux-6.5.0-1024-azure-x86_64-with-glibc2.35&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.3.2&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;html&#34;: &#34;4.1.1&#34;, &#34;metadata&#34;: &#34;3.1.1&#34;}, &#34;CI&#34;: &#34;true&#34;, &#34;JAVA_HOME&#34;: &#34;/usr/lib/jvm/temurin-11-jdk-amd64&#34;}, &#34;tests&#34;: {&#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;, &#34;duration&#34;: &#34;9 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;9 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;, &#34;duration&#34;: &#34;199 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;199 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_expected_file_lists&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlgt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;, &#34;duration&#34;: &#34;7 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_llt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;7 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;, &#34;duration&#34;: &#34;25 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_list_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;25 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_json&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;, &#34;duration&#34;: &#34;0 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_string&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;0 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;, &#34;duration&#34;: &#34;13 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;13 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;, &#34;duration&#34;: &#34;8 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;8 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;, &#34;duration&#34;: &#34;17 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;17 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;, &#34;duration&#34;: &#34;224 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;224 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;, &#34;duration&#34;: &#34;68 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;68 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;, &#34;duration&#34;: &#34;65 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;65 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;, &#34;duration&#34;: &#34;779 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;779 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;, &#34;duration&#34;: &#34;867 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;867 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;, &#34;duration&#34;: &#34;847 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;847 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
+    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.10.14&#34;, &#34;Platform&#34;: &#34;Linux-6.5.0-1024-azure-x86_64-with-glibc2.35&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.3.2&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;html&#34;: &#34;4.1.1&#34;, &#34;metadata&#34;: &#34;3.1.1&#34;}, &#34;CI&#34;: &#34;true&#34;, &#34;JAVA_HOME&#34;: &#34;/usr/lib/jvm/temurin-11-jdk-amd64&#34;}, &#34;tests&#34;: {&#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;, &#34;duration&#34;: &#34;9 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;9 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;, &#34;duration&#34;: &#34;193 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;193 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_expected_file_lists&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlgt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;, &#34;duration&#34;: &#34;7 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_llt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;7 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;, &#34;duration&#34;: &#34;24 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_list_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;24 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_json&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;, &#34;duration&#34;: &#34;0 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_string&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;0 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;, &#34;duration&#34;: &#34;13 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;13 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;, &#34;duration&#34;: &#34;8 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;8 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;, &#34;duration&#34;: &#34;16 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;16 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;, &#34;duration&#34;: &#34;223 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;223 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;, &#34;duration&#34;: &#34;65 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;65 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;, &#34;duration&#34;: &#34;64 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;64 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;, &#34;duration&#34;: &#34;744 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;744 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;, &#34;duration&#34;: &#34;838 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;838 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;, &#34;duration&#34;: &#34;808 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;808 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
     <script>
       (function(){function r(e,n,t){function o(i,f){if(!n[i]){if(!e[i]){var c="function"==typeof require&&require;if(!f&&c)return c(i,!0);if(u)return u(i,!0);var a=new Error("Cannot find module '"+i+"'");throw a.code="MODULE_NOT_FOUND",a}var p=n[i]={exports:{}};e[i][0].call(p.exports,function(r){var n=e[i][1][r];return o(n||r)},p,p.exports,r,e,n,t)}return n[i].exports}for(var u="function"==typeof require&&require,i=0;i<t.length;i++)o(t[i]);return o}return r})()({1:[function(require,module,exports){
 const { getCollapsedCategory, setCollapsedIds } = require('./storage.js')
diff --git a/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml b/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
index 592da469..a65207aa 100644
--- a/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
+++ b/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" ?>
-<coverage version="7.6.0" timestamp="1722209737723" lines-valid="1598" lines-covered="652" line-rate="0.408" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
+<coverage version="7.6.0" timestamp="1722209928801" lines-valid="1592" lines-covered="646" line-rate="0.4058" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
 	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.6.0 -->
 	<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
 	<sources>
@@ -14,15 +14,11 @@
 						<line number="7" hits="1"/>
 						<line number="9" hits="1"/>
 						<line number="10" hits="1"/>
-						<line number="13" hits="1"/>
-						<line number="15" hits="1"/>
-						<line number="16" hits="1"/>
-						<line number="17" hits="1"/>
 					</lines>
 				</class>
 			</classes>
 		</package>
-		<package name="mtbp3.health" line-rate="0.3339" branch-rate="0" complexity="0">
+		<package name="mtbp3.health" line-rate="0.3316" branch-rate="0" complexity="0">
 			<classes>
 				<class name="__init__.py" filename="mtbp3/health/__init__.py" complexity="0" line-rate="1" branch-rate="0">
 					<methods/>
@@ -122,13 +118,13 @@
 						<line number="181" hits="0"/>
 					</lines>
 				</class>
-				<class name="ectd.py" filename="mtbp3/health/ectd.py" complexity="0" line-rate="0.4176" branch-rate="0">
+				<class name="ectd.py" filename="mtbp3/health/ectd.py" complexity="0" line-rate="0.4111" branch-rate="0">
 					<methods/>
 					<lines>
 						<line number="16" hits="1"/>
 						<line number="17" hits="1"/>
 						<line number="18" hits="1"/>
-						<line number="19" hits="1"/>
+						<line number="20" hits="1"/>
 						<line number="21" hits="1"/>
 						<line number="22" hits="1"/>
 						<line number="23" hits="1"/>
@@ -137,24 +133,24 @@
 						<line number="26" hits="1"/>
 						<line number="27" hits="1"/>
 						<line number="28" hits="1"/>
-						<line number="29" hits="1"/>
-						<line number="31" hits="1"/>
+						<line number="30" hits="1"/>
+						<line number="32" hits="1"/>
 						<line number="33" hits="1"/>
 						<line number="34" hits="1"/>
 						<line number="35" hits="1"/>
 						<line number="36" hits="1"/>
 						<line number="37" hits="1"/>
-						<line number="38" hits="1"/>
+						<line number="39" hits="0"/>
 						<line number="40" hits="0"/>
-						<line number="41" hits="0"/>
+						<line number="42" hits="1"/>
 						<line number="43" hits="1"/>
-						<line number="44" hits="1"/>
-						<line number="45" hits="0"/>
+						<line number="44" hits="0"/>
+						<line number="46" hits="1"/>
 						<line number="47" hits="1"/>
 						<line number="48" hits="1"/>
-						<line number="49" hits="1"/>
+						<line number="50" hits="1"/>
 						<line number="51" hits="1"/>
-						<line number="52" hits="1"/>
+						<line number="52" hits="0"/>
 						<line number="53" hits="0"/>
 						<line number="54" hits="0"/>
 						<line number="55" hits="0"/>
@@ -162,8 +158,8 @@
 						<line number="57" hits="0"/>
 						<line number="58" hits="0"/>
 						<line number="59" hits="0"/>
-						<line number="60" hits="0"/>
-						<line number="62" hits="0"/>
+						<line number="61" hits="0"/>
+						<line number="63" hits="0"/>
 						<line number="64" hits="0"/>
 						<line number="65" hits="0"/>
 						<line number="66" hits="0"/>
@@ -173,20 +169,20 @@
 						<line number="70" hits="0"/>
 						<line number="71" hits="0"/>
 						<line number="72" hits="0"/>
-						<line number="73" hits="0"/>
-						<line number="75" hits="0"/>
+						<line number="74" hits="0"/>
+						<line number="76" hits="1"/>
 						<line number="77" hits="1"/>
 						<line number="78" hits="1"/>
-						<line number="79" hits="1"/>
+						<line number="79" hits="0"/>
 						<line number="80" hits="0"/>
-						<line number="81" hits="0"/>
-						<line number="83" hits="0"/>
+						<line number="82" hits="0"/>
+						<line number="84" hits="1"/>
 						<line number="85" hits="1"/>
-						<line number="86" hits="1"/>
-						<line number="88" hits="1"/>
+						<line number="87" hits="1"/>
+						<line number="89" hits="1"/>
 						<line number="90" hits="1"/>
 						<line number="91" hits="1"/>
-						<line number="92" hits="1"/>
+						<line number="92" hits="0"/>
 						<line number="93" hits="0"/>
 						<line number="94" hits="0"/>
 						<line number="95" hits="0"/>
@@ -195,7 +191,7 @@
 						<line number="98" hits="0"/>
 						<line number="99" hits="0"/>
 						<line number="100" hits="0"/>
-						<line number="101" hits="0"/>
+						<line number="102" hits="0"/>
 						<line number="103" hits="0"/>
 						<line number="104" hits="0"/>
 						<line number="105" hits="0"/>
@@ -204,21 +200,20 @@
 						<line number="108" hits="0"/>
 						<line number="109" hits="0"/>
 						<line number="110" hits="0"/>
-						<line number="111" hits="0"/>
+						<line number="112" hits="0"/>
 						<line number="113" hits="0"/>
-						<line number="114" hits="0"/>
+						<line number="115" hits="0"/>
 						<line number="116" hits="0"/>
-						<line number="117" hits="0"/>
-						<line number="119" hits="1"/>
-						<line number="121" hits="1"/>
+						<line number="118" hits="1"/>
+						<line number="120" hits="1"/>
+						<line number="121" hits="0"/>
 						<line number="122" hits="0"/>
 						<line number="123" hits="0"/>
 						<line number="124" hits="0"/>
 						<line number="125" hits="0"/>
-						<line number="126" hits="0"/>
 					</lines>
 				</class>
-				<class name="emt.py" filename="mtbp3/health/emt.py" complexity="0" line-rate="0.3864" branch-rate="0">
+				<class name="emt.py" filename="mtbp3/health/emt.py" complexity="0" line-rate="0.3848" branch-rate="0">
 					<methods/>
 					<lines>
 						<line number="16" hits="1"/>
@@ -228,14 +223,14 @@
 						<line number="20" hits="1"/>
 						<line number="21" hits="1"/>
 						<line number="22" hits="1"/>
-						<line number="23" hits="1"/>
-						<line number="25" hits="1"/>
-						<line number="38" hits="1"/>
-						<line number="46" hits="1"/>
+						<line number="24" hits="1"/>
+						<line number="37" hits="1"/>
+						<line number="45" hits="1"/>
+						<line number="46" hits="0"/>
 						<line number="47" hits="0"/>
-						<line number="48" hits="0"/>
+						<line number="49" hits="1"/>
 						<line number="50" hits="1"/>
-						<line number="51" hits="1"/>
+						<line number="52" hits="1"/>
 						<line number="53" hits="1"/>
 						<line number="54" hits="1"/>
 						<line number="55" hits="1"/>
@@ -248,7 +243,7 @@
 						<line number="62" hits="1"/>
 						<line number="63" hits="1"/>
 						<line number="64" hits="1"/>
-						<line number="65" hits="1"/>
+						<line number="66" hits="1"/>
 						<line number="67" hits="1"/>
 						<line number="68" hits="1"/>
 						<line number="69" hits="1"/>
@@ -256,167 +251,167 @@
 						<line number="71" hits="1"/>
 						<line number="72" hits="1"/>
 						<line number="73" hits="1"/>
-						<line number="74" hits="1"/>
-						<line number="76" hits="0"/>
+						<line number="75" hits="0"/>
+						<line number="77" hits="1"/>
 						<line number="78" hits="1"/>
 						<line number="79" hits="1"/>
 						<line number="80" hits="1"/>
-						<line number="81" hits="1"/>
-						<line number="83" hits="0"/>
+						<line number="82" hits="0"/>
+						<line number="84" hits="1"/>
 						<line number="85" hits="1"/>
 						<line number="86" hits="1"/>
 						<line number="87" hits="1"/>
 						<line number="88" hits="1"/>
 						<line number="89" hits="1"/>
 						<line number="90" hits="1"/>
-						<line number="91" hits="1"/>
-						<line number="93" hits="1"/>
-						<line number="100" hits="1"/>
-						<line number="110" hits="1"/>
+						<line number="92" hits="1"/>
+						<line number="99" hits="1"/>
+						<line number="109" hits="1"/>
+						<line number="114" hits="1"/>
 						<line number="115" hits="1"/>
-						<line number="116" hits="1"/>
+						<line number="119" hits="1"/>
 						<line number="120" hits="1"/>
-						<line number="121" hits="1"/>
-						<line number="123" hits="1"/>
+						<line number="122" hits="1"/>
+						<line number="129" hits="1"/>
 						<line number="130" hits="1"/>
 						<line number="131" hits="1"/>
-						<line number="132" hits="1"/>
+						<line number="133" hits="1"/>
 						<line number="134" hits="1"/>
 						<line number="135" hits="1"/>
-						<line number="136" hits="1"/>
-						<line number="137" hits="0"/>
+						<line number="136" hits="0"/>
+						<line number="138" hits="1"/>
 						<line number="139" hits="1"/>
-						<line number="140" hits="1"/>
+						<line number="141" hits="1"/>
 						<line number="142" hits="1"/>
 						<line number="143" hits="1"/>
-						<line number="144" hits="1"/>
-						<line number="146" hits="0"/>
+						<line number="145" hits="0"/>
+						<line number="147" hits="1"/>
 						<line number="148" hits="1"/>
 						<line number="149" hits="1"/>
 						<line number="150" hits="1"/>
 						<line number="151" hits="1"/>
 						<line number="152" hits="1"/>
 						<line number="153" hits="1"/>
-						<line number="154" hits="1"/>
-						<line number="157" hits="1"/>
+						<line number="156" hits="1"/>
+						<line number="163" hits="1"/>
 						<line number="164" hits="1"/>
 						<line number="165" hits="1"/>
-						<line number="166" hits="1"/>
-						<line number="168" hits="1"/>
-						<line number="182" hits="1"/>
-						<line number="184" hits="1"/>
-						<line number="198" hits="1"/>
-						<line number="200" hits="1"/>
-						<line number="214" hits="1"/>
-						<line number="216" hits="1"/>
-						<line number="230" hits="1"/>
-						<line number="232" hits="1"/>
+						<line number="167" hits="1"/>
+						<line number="181" hits="1"/>
+						<line number="183" hits="1"/>
+						<line number="197" hits="1"/>
+						<line number="199" hits="1"/>
+						<line number="213" hits="1"/>
+						<line number="215" hits="1"/>
+						<line number="229" hits="1"/>
+						<line number="231" hits="1"/>
+						<line number="245" hits="1"/>
 						<line number="246" hits="1"/>
-						<line number="247" hits="1"/>
-						<line number="249" hits="1"/>
-						<line number="259" hits="1"/>
-						<line number="260" hits="0"/>
-						<line number="261" hits="1"/>
-						<line number="263" hits="1"/>
+						<line number="248" hits="1"/>
+						<line number="258" hits="1"/>
+						<line number="259" hits="0"/>
+						<line number="260" hits="1"/>
+						<line number="262" hits="1"/>
+						<line number="277" hits="1"/>
 						<line number="278" hits="1"/>
 						<line number="279" hits="1"/>
-						<line number="280" hits="1"/>
+						<line number="280" hits="0"/>
 						<line number="281" hits="0"/>
-						<line number="282" hits="0"/>
+						<line number="283" hits="0"/>
 						<line number="284" hits="0"/>
 						<line number="285" hits="0"/>
-						<line number="286" hits="0"/>
-						<line number="288" hits="0"/>
+						<line number="287" hits="0"/>
+						<line number="289" hits="1"/>
 						<line number="290" hits="1"/>
-						<line number="291" hits="1"/>
-						<line number="292" hits="0"/>
-						<line number="294" hits="1"/>
-						<line number="296" hits="1"/>
-						<line number="297" hits="0"/>
+						<line number="291" hits="0"/>
+						<line number="293" hits="1"/>
+						<line number="295" hits="1"/>
+						<line number="296" hits="0"/>
+						<line number="297" hits="1"/>
 						<line number="298" hits="1"/>
-						<line number="299" hits="1"/>
-						<line number="301" hits="1"/>
-						<line number="304" hits="1"/>
-						<line number="305" hits="0"/>
-						<line number="307" hits="1"/>
-						<line number="308" hits="0"/>
+						<line number="300" hits="1"/>
+						<line number="303" hits="1"/>
+						<line number="304" hits="0"/>
+						<line number="306" hits="1"/>
+						<line number="307" hits="0"/>
+						<line number="309" hits="1"/>
 						<line number="310" hits="1"/>
-						<line number="311" hits="1"/>
-						<line number="312" hits="0"/>
-						<line number="313" hits="1"/>
-						<line number="314" hits="0"/>
-						<line number="315" hits="1"/>
-						<line number="317" hits="1"/>
+						<line number="311" hits="0"/>
+						<line number="312" hits="1"/>
+						<line number="313" hits="0"/>
+						<line number="314" hits="1"/>
+						<line number="316" hits="1"/>
+						<line number="332" hits="1"/>
 						<line number="333" hits="1"/>
 						<line number="334" hits="1"/>
 						<line number="335" hits="1"/>
 						<line number="336" hits="1"/>
 						<line number="337" hits="1"/>
-						<line number="338" hits="1"/>
+						<line number="339" hits="1"/>
 						<line number="340" hits="1"/>
 						<line number="341" hits="1"/>
 						<line number="342" hits="1"/>
 						<line number="343" hits="1"/>
-						<line number="344" hits="1"/>
-						<line number="346" hits="0"/>
-						<line number="348" hits="1"/>
+						<line number="345" hits="0"/>
+						<line number="347" hits="1"/>
+						<line number="349" hits="1"/>
 						<line number="350" hits="1"/>
-						<line number="351" hits="1"/>
-						<line number="352" hits="0"/>
+						<line number="351" hits="0"/>
+						<line number="353" hits="1"/>
 						<line number="354" hits="1"/>
-						<line number="355" hits="1"/>
+						<line number="355" hits="0"/>
 						<line number="356" hits="0"/>
 						<line number="357" hits="0"/>
-						<line number="358" hits="0"/>
-						<line number="360" hits="1"/>
+						<line number="359" hits="1"/>
+						<line number="361" hits="1"/>
 						<line number="362" hits="1"/>
-						<line number="363" hits="1"/>
-						<line number="365" hits="1"/>
+						<line number="364" hits="1"/>
+						<line number="378" hits="1"/>
 						<line number="379" hits="1"/>
-						<line number="380" hits="1"/>
-						<line number="381" hits="0"/>
+						<line number="380" hits="0"/>
+						<line number="381" hits="1"/>
 						<line number="382" hits="1"/>
-						<line number="383" hits="1"/>
-						<line number="384" hits="0"/>
-						<line number="386" hits="1"/>
+						<line number="383" hits="0"/>
+						<line number="385" hits="1"/>
+						<line number="387" hits="1"/>
 						<line number="388" hits="1"/>
 						<line number="389" hits="1"/>
-						<line number="390" hits="1"/>
+						<line number="391" hits="1"/>
 						<line number="392" hits="1"/>
-						<line number="393" hits="1"/>
-						<line number="395" hits="1"/>
-						<line number="398" hits="1"/>
+						<line number="394" hits="1"/>
+						<line number="397" hits="1"/>
+						<line number="408" hits="0"/>
 						<line number="409" hits="0"/>
 						<line number="410" hits="0"/>
 						<line number="411" hits="0"/>
 						<line number="412" hits="0"/>
-						<line number="413" hits="0"/>
-						<line number="415" hits="0"/>
+						<line number="414" hits="0"/>
+						<line number="416" hits="0"/>
 						<line number="417" hits="0"/>
-						<line number="418" hits="0"/>
-						<line number="420" hits="0"/>
+						<line number="419" hits="0"/>
+						<line number="421" hits="0"/>
 						<line number="422" hits="0"/>
-						<line number="423" hits="0"/>
-						<line number="425" hits="0"/>
-						<line number="427" hits="1"/>
+						<line number="424" hits="0"/>
+						<line number="426" hits="1"/>
+						<line number="439" hits="0"/>
 						<line number="440" hits="0"/>
 						<line number="441" hits="0"/>
-						<line number="442" hits="0"/>
-						<line number="444" hits="1"/>
+						<line number="443" hits="1"/>
+						<line number="456" hits="0"/>
 						<line number="457" hits="0"/>
-						<line number="458" hits="0"/>
+						<line number="459" hits="0"/>
 						<line number="460" hits="0"/>
-						<line number="461" hits="0"/>
-						<line number="463" hits="0"/>
+						<line number="462" hits="0"/>
+						<line number="464" hits="0"/>
 						<line number="465" hits="0"/>
 						<line number="466" hits="0"/>
 						<line number="467" hits="0"/>
-						<line number="468" hits="0"/>
+						<line number="469" hits="0"/>
 						<line number="470" hits="0"/>
-						<line number="471" hits="0"/>
-						<line number="473" hits="0"/>
-						<line number="475" hits="0"/>
-						<line number="477" hits="1"/>
+						<line number="472" hits="0"/>
+						<line number="474" hits="0"/>
+						<line number="476" hits="1"/>
+						<line number="477" hits="0"/>
 						<line number="478" hits="0"/>
 						<line number="479" hits="0"/>
 						<line number="480" hits="0"/>
@@ -436,47 +431,47 @@
 						<line number="494" hits="0"/>
 						<line number="495" hits="0"/>
 						<line number="496" hits="0"/>
-						<line number="497" hits="0"/>
-						<line number="499" hits="1"/>
+						<line number="498" hits="1"/>
+						<line number="512" hits="0"/>
 						<line number="513" hits="0"/>
 						<line number="514" hits="0"/>
-						<line number="515" hits="0"/>
-						<line number="517" hits="0"/>
-						<line number="519" hits="0"/>
+						<line number="516" hits="0"/>
+						<line number="518" hits="0"/>
+						<line number="520" hits="0"/>
 						<line number="521" hits="0"/>
-						<line number="522" hits="0"/>
+						<line number="523" hits="0"/>
 						<line number="524" hits="0"/>
 						<line number="525" hits="0"/>
-						<line number="526" hits="0"/>
+						<line number="527" hits="0"/>
 						<line number="528" hits="0"/>
-						<line number="529" hits="0"/>
+						<line number="530" hits="0"/>
 						<line number="531" hits="0"/>
-						<line number="532" hits="0"/>
+						<line number="533" hits="0"/>
 						<line number="534" hits="0"/>
-						<line number="535" hits="0"/>
+						<line number="536" hits="0"/>
 						<line number="537" hits="0"/>
-						<line number="538" hits="0"/>
+						<line number="539" hits="0"/>
 						<line number="540" hits="0"/>
-						<line number="541" hits="0"/>
-						<line number="543" hits="1"/>
+						<line number="542" hits="1"/>
+						<line number="553" hits="0"/>
 						<line number="554" hits="0"/>
-						<line number="555" hits="0"/>
+						<line number="556" hits="0"/>
 						<line number="557" hits="0"/>
 						<line number="558" hits="0"/>
 						<line number="559" hits="0"/>
 						<line number="560" hits="0"/>
 						<line number="561" hits="0"/>
-						<line number="562" hits="0"/>
-						<line number="564" hits="0"/>
+						<line number="563" hits="0"/>
+						<line number="565" hits="0"/>
 						<line number="566" hits="0"/>
 						<line number="567" hits="0"/>
 						<line number="568" hits="0"/>
-						<line number="569" hits="0"/>
+						<line number="570" hits="0"/>
 						<line number="571" hits="0"/>
-						<line number="572" hits="0"/>
+						<line number="573" hits="0"/>
 						<line number="574" hits="0"/>
-						<line number="575" hits="0"/>
-						<line number="577" hits="0"/>
+						<line number="576" hits="0"/>
+						<line number="579" hits="0"/>
 						<line number="580" hits="0"/>
 						<line number="581" hits="0"/>
 						<line number="582" hits="0"/>
@@ -488,32 +483,32 @@
 						<line number="588" hits="0"/>
 						<line number="589" hits="0"/>
 						<line number="590" hits="0"/>
-						<line number="591" hits="0"/>
+						<line number="592" hits="0"/>
 						<line number="593" hits="0"/>
 						<line number="594" hits="0"/>
 						<line number="595" hits="0"/>
-						<line number="596" hits="0"/>
-						<line number="598" hits="0"/>
-						<line number="600" hits="0"/>
+						<line number="597" hits="0"/>
+						<line number="599" hits="0"/>
+						<line number="601" hits="0"/>
 						<line number="602" hits="0"/>
-						<line number="603" hits="0"/>
+						<line number="604" hits="0"/>
 						<line number="605" hits="0"/>
 						<line number="606" hits="0"/>
-						<line number="607" hits="0"/>
-						<line number="609" hits="1"/>
+						<line number="608" hits="1"/>
+						<line number="609" hits="0"/>
 						<line number="610" hits="0"/>
 						<line number="611" hits="0"/>
-						<line number="612" hits="0"/>
+						<line number="613" hits="0"/>
 						<line number="614" hits="0"/>
 						<line number="615" hits="0"/>
 						<line number="616" hits="0"/>
 						<line number="617" hits="0"/>
-						<line number="618" hits="0"/>
+						<line number="619" hits="0"/>
 						<line number="620" hits="0"/>
 						<line number="621" hits="0"/>
 						<line number="622" hits="0"/>
-						<line number="623" hits="0"/>
-						<line number="625" hits="1"/>
+						<line number="624" hits="1"/>
+						<line number="625" hits="0"/>
 						<line number="626" hits="0"/>
 						<line number="627" hits="0"/>
 						<line number="628" hits="0"/>
@@ -521,12 +516,12 @@
 						<line number="630" hits="0"/>
 						<line number="631" hits="0"/>
 						<line number="632" hits="0"/>
-						<line number="633" hits="0"/>
-						<line number="635" hits="1"/>
+						<line number="634" hits="1"/>
+						<line number="635" hits="0"/>
 						<line number="636" hits="0"/>
 						<line number="637" hits="0"/>
-						<line number="638" hits="0"/>
-						<line number="640" hits="1"/>
+						<line number="639" hits="1"/>
+						<line number="640" hits="0"/>
 						<line number="641" hits="0"/>
 						<line number="642" hits="0"/>
 						<line number="643" hits="0"/>
@@ -539,24 +534,24 @@
 						<line number="650" hits="0"/>
 						<line number="651" hits="0"/>
 						<line number="652" hits="0"/>
-						<line number="653" hits="0"/>
-						<line number="655" hits="0"/>
-						<line number="657" hits="1"/>
+						<line number="654" hits="0"/>
+						<line number="656" hits="1"/>
+						<line number="663" hits="0"/>
 						<line number="664" hits="0"/>
 						<line number="665" hits="0"/>
-						<line number="666" hits="0"/>
+						<line number="667" hits="0"/>
 						<line number="668" hits="0"/>
 						<line number="669" hits="0"/>
-						<line number="670" hits="0"/>
-						<line number="672" hits="1"/>
+						<line number="671" hits="1"/>
+						<line number="684" hits="0"/>
 						<line number="685" hits="0"/>
-						<line number="686" hits="0"/>
+						<line number="687" hits="0"/>
 						<line number="688" hits="0"/>
-						<line number="689" hits="0"/>
+						<line number="690" hits="0"/>
 						<line number="691" hits="0"/>
 						<line number="692" hits="0"/>
-						<line number="693" hits="0"/>
-						<line number="695" hits="1"/>
+						<line number="694" hits="1"/>
+						<line number="705" hits="0"/>
 						<line number="706" hits="0"/>
 						<line number="707" hits="0"/>
 						<line number="708" hits="0"/>
@@ -564,59 +559,58 @@
 						<line number="710" hits="0"/>
 						<line number="711" hits="0"/>
 						<line number="712" hits="0"/>
-						<line number="713" hits="0"/>
-						<line number="715" hits="0"/>
+						<line number="714" hits="0"/>
+						<line number="716" hits="0"/>
 						<line number="717" hits="0"/>
-						<line number="718" hits="0"/>
+						<line number="719" hits="0"/>
 						<line number="720" hits="0"/>
 						<line number="721" hits="0"/>
-						<line number="722" hits="0"/>
-						<line number="724" hits="0"/>
+						<line number="723" hits="0"/>
+						<line number="725" hits="0"/>
 						<line number="726" hits="0"/>
 						<line number="727" hits="0"/>
-						<line number="728" hits="0"/>
-						<line number="731" hits="1"/>
-						<line number="732" hits="0"/>
+						<line number="730" hits="1"/>
+						<line number="731" hits="0"/>
+						<line number="733" hits="0"/>
 						<line number="734" hits="0"/>
 						<line number="735" hits="0"/>
 						<line number="736" hits="0"/>
 						<line number="737" hits="0"/>
 						<line number="738" hits="0"/>
 						<line number="739" hits="0"/>
-						<line number="740" hits="0"/>
+						<line number="741" hits="0"/>
 						<line number="742" hits="0"/>
-						<line number="743" hits="0"/>
+						<line number="744" hits="0"/>
 						<line number="745" hits="0"/>
 						<line number="746" hits="0"/>
-						<line number="747" hits="0"/>
+						<line number="748" hits="0"/>
 						<line number="749" hits="0"/>
 						<line number="750" hits="0"/>
 						<line number="751" hits="0"/>
-						<line number="752" hits="0"/>
+						<line number="753" hits="0"/>
 						<line number="754" hits="0"/>
 						<line number="755" hits="0"/>
-						<line number="756" hits="0"/>
+						<line number="757" hits="0"/>
 						<line number="758" hits="0"/>
 						<line number="759" hits="0"/>
 						<line number="760" hits="0"/>
 						<line number="761" hits="0"/>
 						<line number="762" hits="0"/>
-						<line number="763" hits="0"/>
+						<line number="764" hits="0"/>
 						<line number="765" hits="0"/>
 						<line number="766" hits="0"/>
 						<line number="767" hits="0"/>
-						<line number="768" hits="0"/>
+						<line number="769" hits="0"/>
 						<line number="770" hits="0"/>
 						<line number="771" hits="0"/>
-						<line number="772" hits="0"/>
+						<line number="773" hits="0"/>
 						<line number="774" hits="0"/>
-						<line number="775" hits="0"/>
+						<line number="776" hits="0"/>
 						<line number="777" hits="0"/>
 						<line number="778" hits="0"/>
 						<line number="779" hits="0"/>
-						<line number="780" hits="0"/>
-						<line number="782" hits="1"/>
-						<line number="783" hits="0"/>
+						<line number="781" hits="1"/>
+						<line number="782" hits="0"/>
 					</lines>
 				</class>
 			</classes>
diff --git a/_images/0409ff6dc67e70035ddcbeded09aa0b665ebaa29a4fe0eba9ffa333bdc0f3aa5.png b/_images/0409ff6dc67e70035ddcbeded09aa0b665ebaa29a4fe0eba9ffa333bdc0f3aa5.png
new file mode 100644
index 00000000..2a8eb303
Binary files /dev/null and b/_images/0409ff6dc67e70035ddcbeded09aa0b665ebaa29a4fe0eba9ffa333bdc0f3aa5.png differ
diff --git a/_images/12aae952faff8d466691aa04932a5d7b8a466e53a6e81326805306ba78c86e5a.png b/_images/12aae952faff8d466691aa04932a5d7b8a466e53a6e81326805306ba78c86e5a.png
deleted file mode 100644
index 75e6f6bd..00000000
Binary files a/_images/12aae952faff8d466691aa04932a5d7b8a466e53a6e81326805306ba78c86e5a.png and /dev/null differ
diff --git a/_images/40c8b41354cba2e6b7259fdf19faaa93344cd4d105ffa85824cf52c7c92f49d4.png b/_images/40c8b41354cba2e6b7259fdf19faaa93344cd4d105ffa85824cf52c7c92f49d4.png
deleted file mode 100644
index 505a58bc..00000000
Binary files a/_images/40c8b41354cba2e6b7259fdf19faaa93344cd4d105ffa85824cf52c7c92f49d4.png and /dev/null differ
diff --git a/_images/acb5ba945c582c6bb2cbc526a83065de0ed316eb199c397d2ac4a45665eae448.png b/_images/acb5ba945c582c6bb2cbc526a83065de0ed316eb199c397d2ac4a45665eae448.png
new file mode 100644
index 00000000..aa90ceff
Binary files /dev/null and b/_images/acb5ba945c582c6bb2cbc526a83065de0ed316eb199c397d2ac4a45665eae448.png differ
diff --git a/_modules/index.html b/_modules/index.html
index 4bc8c243..2716f48d 100644
--- a/_modules/index.html
+++ b/_modules/index.html
@@ -91,7 +91,6 @@
            <div itemprop="articleBody">
              
   <h1>All modules for which code is available</h1>
-<ul><li><a href="mtbp3.html">mtbp3</a></li>
 <ul><li><a href="mtbp3/health/clinical.html">mtbp3.health.clinical</a></li>
 <li><a href="mtbp3/health/ectd.html">mtbp3.health.ectd</a></li>
 <li><a href="mtbp3/health/emt.html">mtbp3.health.emt</a></li>
@@ -104,7 +103,7 @@ <h1>All modules for which code is available</h1>
 <li><a href="mtbp3/util/cdtg.html">mtbp3.util.cdtg</a></li>
 <li><a href="mtbp3/util/lsr.html">mtbp3.util.lsr</a></li>
 <li><a href="mtbp3/util/util.html">mtbp3.util.util</a></li>
-</ul></ul></ul>
+</ul></ul>
 
            </div>
           </div>
diff --git a/_modules/mtbp3.html b/_modules/mtbp3.html
deleted file mode 100644
index 1dfa04f1..00000000
--- a/_modules/mtbp3.html
+++ /dev/null
@@ -1,144 +0,0 @@
-<!DOCTYPE html>
-<html class="writer-html5" lang="en" data-content_root="../">
-<head>
-  <meta charset="utf-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mtbp3 &mdash; mtbp3  documentation</title>
-      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
-      <link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
-      <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
-      <link rel="stylesheet" type="text/css" href="../_static/css/custom.css?v=ce7ddcad" />
-
-  
-  <!--[if lt IE 9]>
-    <script src="../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-  
-        <script src="../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../_static/documentation_options.js?v=5929fcd5"></script>
-        <script src="../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../_static/js/theme.js"></script>
-    <link rel="index" title="Index" href="../genindex.html" />
-    <link rel="search" title="Search" href="../search.html" /> 
-</head>
-
-<body class="wy-body-for-nav"> 
-  <div class="wy-grid-for-nav">
-    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
-      <div class="wy-side-scroll">
-        <div class="wy-side-nav-search" >
-
-          
-          
-          <a href="../index.html" class="icon icon-home">
-            mtbp3
-          </a>
-<div role="search">
-  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
-    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
-    <input type="hidden" name="check_keywords" value="yes" />
-    <input type="hidden" name="area" value="default" />
-  </form>
-</div>
-        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
-              <ul>
-<li class="toctree-l1"><a class="reference internal" href="../example_cdtg.html">U/Graph/Categorical Plots Using catPlotter</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_files.html">U/System/List Folder Contents</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_clinical.html">H/Clinical/Grouped Summary</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_ectd.html">H/ICH/eCTD/US/3.2/Heading</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_ectd2.html">H/ICH/eCTD/US/4.0/Heading</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_emt.html">H/ICH/MedDRA/Basics</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_emt2.html">H/ICH/MedDRA/SMQs by ICH</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_emt3.html">H/ICH/MedDRA/FMQs by FDA</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../example_emt4.html">H/ICH/MedDRA/(MLGs by CIOMS)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../std_iso_pdf.html">Std/ISO/PDF</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../std_iso_idmp.html">Std/ISO/IDMP</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../std_cdisc.html">Std/CDISC/Library Resource</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../statlab_kappa.html">StatLab/Reli/Cohen’s Kappa</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../statlab_kappa2.html">StatLab/Reli/Fleiss’s Kappa</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../statlab_corr_tau.html">StatLab/Corr/NP/Kendall’s Tau</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../statlab_corr_spearman_rho.html">StatLab/Corr/NP/Spearman’s Rho</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../changelog.html">Changelog</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../contributing.html">Contributing</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../conduct.html">Code of Conduct</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../autoapi/index.html">API Reference</a></li>
-</ul>
-
-        </div>
-      </div>
-    </nav>
-
-    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
-          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
-          <a href="../index.html">mtbp3</a>
-      </nav>
-
-      <div class="wy-nav-content">
-        <div class="rst-content">
-          <div role="navigation" aria-label="Page navigation">
-  <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="index.html">Module code</a></li>
-      <li class="breadcrumb-item active">mtbp3</li>
-      <li class="wy-breadcrumbs-aside">
-      </li>
-  </ul>
-  <hr/>
-</div>
-          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
-           <div itemprop="articleBody">
-             
-  <h1>Source code for mtbp3</h1><div class="highlight"><pre>
-<span></span>
-<span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">This module is the entry point for the mtbp3 package.</span>
-<span class="sd">It imports all the functions and classes from the util module.</span>
-<span class="sd">&quot;&quot;&quot;</span>
-
-<span class="kn">from</span> <span class="nn">.util</span> <span class="kn">import</span> <span class="o">*</span>
-
-<span class="kn">from</span> <span class="nn">importlib.metadata</span> <span class="kn">import</span> <span class="n">version</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="n">version</span><span class="p">(</span><span class="n">__package__</span><span class="p">)</span>
-
-
-<span class="kn">import</span> <span class="nn">os</span>
-
-<span class="n">_ROOT</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="vm">__file__</span><span class="p">))</span>
-<div class="viewcode-block" id="get_data">
-<a class="viewcode-back" href="../autoapi/mtbp3/index.html#mtbp3.get_data">[docs]</a>
-<span class="k">def</span> <span class="nf">get_data</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-    <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_ROOT</span><span class="p">,</span> <span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="n">path</span><span class="p">)</span></div>
-
-</pre></div>
-
-           </div>
-          </div>
-          <footer>
-
-  <hr/>
-
-  <div role="contentinfo">
-    <p>&#169; Copyright 2024, Y. Hsu.</p>
-  </div>
-
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
-
-</footer>
-        </div>
-      </div>
-    </section>
-  </div>
-  <script>
-      jQuery(function () {
-          SphinxRtdTheme.Navigation.enable(true);
-      });
-  </script> 
-
-</body>
-</html>
\ No newline at end of file
diff --git a/_modules/mtbp3/health/clinical.html b/_modules/mtbp3/health/clinical.html
index 92b30618..9beac33b 100644
--- a/_modules/mtbp3/health/clinical.html
+++ b/_modules/mtbp3/health/clinical.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.health.clinical</li>
       <li class="wy-breadcrumbs-aside">
       </li>
diff --git a/_modules/mtbp3/health/ectd.html b/_modules/mtbp3/health/ectd.html
index 4736b1fe..1ba4cb49 100644
--- a/_modules/mtbp3/health/ectd.html
+++ b/_modules/mtbp3/health/ectd.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.health.ectd</li>
       <li class="wy-breadcrumbs-aside">
       </li>
@@ -110,7 +109,6 @@ <h1>Source code for mtbp3.health.ectd</h1><div class="highlight"><pre>
 
 <span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
 <span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">mtbp3</span>
 <span class="kn">from</span> <span class="nn">mtbp3</span> <span class="kn">import</span> <span class="n">util</span>
     
 <div class="viewcode-block" id="ctoc_by_fda">
@@ -121,7 +119,7 @@ <h1>Source code for mtbp3.health.ectd</h1><div class="highlight"><pre>
         <span class="k">assert</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ctoc_version</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">char</span><span class="o">.</span><span class="n">isdigit</span><span class="p">()</span> <span class="ow">or</span> <span class="n">char</span> <span class="o">==</span> <span class="s1">&#39;.&#39;</span> <span class="k">for</span> <span class="n">char</span> <span class="ow">in</span> <span class="n">ctoc_version</span><span class="p">),</span> <span class="s2">&quot;Version must be a string with integers and dots&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">ectd_version</span> <span class="o">=</span> <span class="n">ectd_version</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">ctoc_version</span> <span class="o">=</span> <span class="n">ctoc_version</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">folder_name</span> <span class="o">=</span> <span class="n">mtbp3</span><span class="o">.</span><span class="n">get_data</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;supp_ectd/fda_ectd</span><span class="si">{</span><span class="n">ectd_version</span><span class="si">}</span><span class="s1">_ctocv</span><span class="si">{</span><span class="n">ctoc_version</span><span class="si">}</span><span class="s1">.txt&#39;</span><span class="p">)</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">folder_name</span> <span class="o">=</span> <span class="n">util</span><span class="o">.</span><span class="n">get_data</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;supp_ectd/fda_ectd</span><span class="si">{</span><span class="n">ectd_version</span><span class="si">}</span><span class="s1">_ctocv</span><span class="si">{</span><span class="n">ctoc_version</span><span class="si">}</span><span class="s1">.txt&#39;</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">ctoc</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">__load_list</span><span class="p">()</span>
         <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">folder_name</span><span class="p">)</span>
 
@@ -144,7 +142,7 @@ <h1>Source code for mtbp3.health.ectd</h1><div class="highlight"><pre>
             <span class="n">module</span> <span class="o">=</span> <span class="mi">1</span>
 
         <span class="n">filtered_ctoc</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">ctoc</span> <span class="k">if</span> <span class="n">item</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">module</span><span class="p">))]</span>
-        <span class="n">tree</span> <span class="o">=</span> <span class="n">mtbp3</span><span class="o">.</span><span class="n">util</span><span class="o">.</span><span class="n">cdt</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span><span class="o">=</span><span class="n">filtered_ctoc</span><span class="p">,</span> <span class="n">infmt</span><span class="o">=</span><span class="s1">&#39;dotspace&#39;</span><span class="p">)</span>
+        <span class="n">tree</span> <span class="o">=</span> <span class="n">util</span><span class="o">.</span><span class="n">cdt</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span><span class="o">=</span><span class="n">filtered_ctoc</span><span class="p">,</span> <span class="n">infmt</span><span class="o">=</span><span class="s1">&#39;dotspace&#39;</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">tree</span><span class="o">.</span><span class="n">list_tree</span><span class="p">(</span><span class="n">to_right</span><span class="o">=</span><span class="n">to_right</span><span class="p">)</span></div>
 
     
@@ -216,9 +214,9 @@ <h1>Source code for mtbp3.health.ectd</h1><div class="highlight"><pre>
                         <span class="n">out_colored</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">first_part</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">colored_second_part</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
                     <span class="k">else</span><span class="p">:</span>
                         <span class="n">out_colored</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">row</span><span class="p">)</span>
-                <span class="n">out_tree</span> <span class="o">=</span> <span class="n">mtbp3</span><span class="o">.</span><span class="n">util</span><span class="o">.</span><span class="n">cdt</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span><span class="o">=</span><span class="n">out_colored</span><span class="p">,</span> <span class="n">infmt</span><span class="o">=</span><span class="s1">&#39;dotspace&#39;</span><span class="p">)</span>
+                <span class="n">out_tree</span> <span class="o">=</span> <span class="n">util</span><span class="o">.</span><span class="n">cdt</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span><span class="o">=</span><span class="n">out_colored</span><span class="p">,</span> <span class="n">infmt</span><span class="o">=</span><span class="s1">&#39;dotspace&#39;</span><span class="p">)</span>
             <span class="k">else</span><span class="p">:</span>
-                <span class="n">out_tree</span> <span class="o">=</span> <span class="n">mtbp3</span><span class="o">.</span><span class="n">util</span><span class="o">.</span><span class="n">cdt</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span><span class="o">=</span><span class="n">out</span><span class="p">,</span> <span class="n">infmt</span><span class="o">=</span><span class="s1">&#39;dotspace&#39;</span><span class="p">)</span>
+                <span class="n">out_tree</span> <span class="o">=</span> <span class="n">util</span><span class="o">.</span><span class="n">cdt</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span><span class="o">=</span><span class="n">out</span><span class="p">,</span> <span class="n">infmt</span><span class="o">=</span><span class="s1">&#39;dotspace&#39;</span><span class="p">)</span>
             <span class="k">return</span> <span class="n">out_tree</span><span class="o">.</span><span class="n">list_tree</span><span class="p">(</span><span class="n">to_right</span><span class="o">=</span><span class="n">to_right</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid value for outfmt. Supported values are &#39;simple&#39; and &#39;tree&#39;.&quot;</span><span class="p">)</span></div>
diff --git a/_modules/mtbp3/health/emt.html b/_modules/mtbp3/health/emt.html
index 64c640d0..aa985773 100644
--- a/_modules/mtbp3/health/emt.html
+++ b/_modules/mtbp3/health/emt.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.health.emt</li>
       <li class="wy-breadcrumbs-aside">
       </li>
@@ -114,7 +113,6 @@ <h1>Source code for mtbp3.health.emt</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
-<span class="kn">import</span> <span class="nn">mtbp3</span>
 <span class="kn">from</span> <span class="nn">mtbp3</span> <span class="kn">import</span> <span class="n">util</span>
 
 <div class="viewcode-block" id="Emt">
@@ -144,7 +142,7 @@ <h1>Source code for mtbp3.health.emt</h1><div class="highlight"><pre>
             <span class="bp">self</span><span class="o">.</span><span class="n">folder_name</span> <span class="o">=</span> <span class="n">folder_name</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">demo</span> <span class="o">=</span> <span class="kc">False</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">folder_name</span> <span class="o">=</span> <span class="n">mtbp3</span><span class="o">.</span><span class="n">get_data</span><span class="p">(</span><span class="s1">&#39;test_emt/MedDRA&#39;</span><span class="p">)</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">folder_name</span> <span class="o">=</span> <span class="n">util</span><span class="o">.</span><span class="n">get_data</span><span class="p">(</span><span class="s1">&#39;test_emt/MedDRA&#39;</span><span class="p">)</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">demo</span> <span class="o">=</span> <span class="kc">True</span>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">version_number</span> <span class="o">=</span> <span class="s2">&quot;00.0&quot;</span>
@@ -784,7 +782,7 @@ <h1>Source code for mtbp3.health.emt</h1><div class="highlight"><pre>
     <span class="k">def</span> <span class="nf">load_fmq_default</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">fmq_list_default</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="k">try</span><span class="p">:</span>
-                <span class="n">tmp</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">mtbp3</span><span class="o">.</span><span class="n">get_data</span><span class="p">(</span><span class="s1">&#39;test_emt/FMQ&#39;</span><span class="p">),</span> <span class="s2">&quot;FMQ_Consolidated_List.csv&quot;</span><span class="p">),</span> <span class="n">delimiter</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">header</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+                <span class="n">tmp</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">util</span><span class="o">.</span><span class="n">get_data</span><span class="p">(</span><span class="s1">&#39;test_emt/FMQ&#39;</span><span class="p">),</span> <span class="s2">&quot;FMQ_Consolidated_List.csv&quot;</span><span class="p">),</span> <span class="n">delimiter</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">header</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
                 <span class="n">tmp</span> <span class="o">=</span> <span class="n">tmp</span><span class="o">.</span><span class="n">iloc</span><span class="p">[:,</span> <span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
                 <span class="n">tmp</span><span class="o">.</span><span class="n">columns</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;fmq&#39;</span><span class="p">,</span> <span class="s1">&#39;pt&#39;</span><span class="p">,</span> <span class="s1">&#39;fmq_pt&#39;</span><span class="p">,</span> <span class="s1">&#39;classification&#39;</span><span class="p">]</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">fmq_list_default</span> <span class="o">=</span> <span class="n">tmp</span>
diff --git a/_modules/mtbp3/statlab/corr.html b/_modules/mtbp3/statlab/corr.html
index 2d596947..17abbc86 100644
--- a/_modules/mtbp3/statlab/corr.html
+++ b/_modules/mtbp3/statlab/corr.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.statlab.corr</li>
       <li class="wy-breadcrumbs-aside">
       </li>
diff --git a/_modules/mtbp3/statlab/kappa.html b/_modules/mtbp3/statlab/kappa.html
index be063ccb..35ef8365 100644
--- a/_modules/mtbp3/statlab/kappa.html
+++ b/_modules/mtbp3/statlab/kappa.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.statlab.kappa</li>
       <li class="wy-breadcrumbs-aside">
       </li>
diff --git a/_modules/mtbp3/stdcdisc/lib.html b/_modules/mtbp3/stdcdisc/lib.html
index 0ea5b71d..eab9bf93 100644
--- a/_modules/mtbp3/stdcdisc/lib.html
+++ b/_modules/mtbp3/stdcdisc/lib.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.stdcdisc.lib</li>
       <li class="wy-breadcrumbs-aside">
       </li>
diff --git a/_modules/mtbp3/stdiso/pdfsummary.html b/_modules/mtbp3/stdiso/pdfsummary.html
index ed18ce45..5cd33e29 100644
--- a/_modules/mtbp3/stdiso/pdfsummary.html
+++ b/_modules/mtbp3/stdiso/pdfsummary.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.stdiso.pdfsummary</li>
       <li class="wy-breadcrumbs-aside">
       </li>
diff --git a/_modules/mtbp3/util.html b/_modules/mtbp3/util.html
index ec8c378d..05db2d40 100644
--- a/_modules/mtbp3/util.html
+++ b/_modules/mtbp3/util.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../mtbp3.html">mtbp3</a></li>
       <li class="breadcrumb-item active">mtbp3.util</li>
       <li class="wy-breadcrumbs-aside">
       </li>
@@ -101,7 +100,7 @@ <h1>Source code for mtbp3.util</h1><div class="highlight"><pre>
 
 <span class="n">_ROOT</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="vm">__file__</span><span class="p">))</span>
 <div class="viewcode-block" id="get_data">
-<a class="viewcode-back" href="../../autoapi/mtbp3/util/index.html#mtbp3.util.get_data">[docs]</a>
+<a class="viewcode-back" href="../../autoapi/mtbp3/util/index.html#mtbp3.get_data">[docs]</a>
 <span class="k">def</span> <span class="nf">get_data</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
     <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_ROOT</span><span class="p">,</span> <span class="s1">&#39;../data&#39;</span><span class="p">,</span> <span class="n">path</span><span class="p">)</span></div>
 
diff --git a/_modules/mtbp3/util/cdt.html b/_modules/mtbp3/util/cdt.html
index c447cd08..dd153b6e 100644
--- a/_modules/mtbp3/util/cdt.html
+++ b/_modules/mtbp3/util/cdt.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
           <li class="breadcrumb-item"><a href="../util.html">mtbp3.util</a></li>
       <li class="breadcrumb-item active">mtbp3.util.cdt</li>
       <li class="wy-breadcrumbs-aside">
diff --git a/_modules/mtbp3/util/cdtg.html b/_modules/mtbp3/util/cdtg.html
index 1a6a6cae..abb8925f 100644
--- a/_modules/mtbp3/util/cdtg.html
+++ b/_modules/mtbp3/util/cdtg.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
           <li class="breadcrumb-item"><a href="../util.html">mtbp3.util</a></li>
       <li class="breadcrumb-item active">mtbp3.util.cdtg</li>
       <li class="wy-breadcrumbs-aside">
diff --git a/_modules/mtbp3/util/lsr.html b/_modules/mtbp3/util/lsr.html
index 54cc8586..0653f75c 100644
--- a/_modules/mtbp3/util/lsr.html
+++ b/_modules/mtbp3/util/lsr.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
           <li class="breadcrumb-item"><a href="../util.html">mtbp3.util</a></li>
       <li class="breadcrumb-item active">mtbp3.util.lsr</li>
       <li class="wy-breadcrumbs-aside">
diff --git a/_modules/mtbp3/util/util.html b/_modules/mtbp3/util/util.html
index be52ba32..b05c41dd 100644
--- a/_modules/mtbp3/util/util.html
+++ b/_modules/mtbp3/util/util.html
@@ -82,7 +82,6 @@
   <ul class="wy-breadcrumbs">
       <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
           <li class="breadcrumb-item"><a href="../../index.html">Module code</a></li>
-          <li class="breadcrumb-item"><a href="../../mtbp3.html">mtbp3</a></li>
           <li class="breadcrumb-item"><a href="../util.html">mtbp3.util</a></li>
       <li class="breadcrumb-item active">mtbp3.util.util</li>
       <li class="wy-breadcrumbs-aside">
diff --git a/_sources/autoapi/mtbp3/index.rst.txt b/_sources/autoapi/mtbp3/index.rst.txt
index 5d8badf7..ea5da792 100644
--- a/_sources/autoapi/mtbp3/index.rst.txt
+++ b/_sources/autoapi/mtbp3/index.rst.txt
@@ -30,7 +30,6 @@ Attributes
 
    mtbp3._ROOT
    mtbp3.__version__
-   mtbp3._ROOT
 
 
 Classes
@@ -52,7 +51,6 @@ Functions
    mtbp3.diff_2cols_in_1df
    mtbp3.diff_2cols_in_2df
    mtbp3.summarize_1nc_by_2group
-   mtbp3.get_data
 
 
 Package Contents
@@ -362,7 +360,3 @@ Package Contents
 
 .. py:data:: __version__
 
-.. py:data:: _ROOT
-
-.. py:function:: get_data(path)
-
diff --git a/_static/reports/coverage/coverage-badge.svg b/_static/reports/coverage/coverage-badge.svg
index a3f388ee..aa0ff4a9 100644
--- a/_static/reports/coverage/coverage-badge.svg
+++ b/_static/reports/coverage/coverage-badge.svg
@@ -1 +1 @@
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="114" height="20" role="img" aria-label="coverage: 40.80%"><title>coverage: 40.80%</title><linearGradient id="s" x2="0" y2="100%"><stop offset="0" stop-color="#bbb" stop-opacity=".1"/><stop offset="1" stop-opacity=".1"/></linearGradient><clipPath id="r"><rect width="114" height="20" rx="3" fill="#fff"/></clipPath><g clip-path="url(#r)"><rect width="61" height="20" fill="#555"/><rect x="61" width="53" height="20" fill="#e05d44"/><rect width="114" height="20" fill="url(#s)"/></g><g fill="#fff" text-anchor="middle" font-family="Verdana,Geneva,DejaVu Sans,sans-serif" text-rendering="geometricPrecision" font-size="110"><text aria-hidden="true" x="315" y="150" fill="#010101" fill-opacity=".3" transform="scale(.1)" textLength="510">coverage</text><text x="315" y="140" transform="scale(.1)" fill="#fff" textLength="510">coverage</text><text aria-hidden="true" x="865" y="150" fill="#010101" fill-opacity=".3" transform="scale(.1)" textLength="430">40.80%</text><text x="865" y="140" transform="scale(.1)" fill="#fff" textLength="430">40.80%</text></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="114" height="20" role="img" aria-label="coverage: 40.58%"><title>coverage: 40.58%</title><linearGradient id="s" x2="0" y2="100%"><stop offset="0" stop-color="#bbb" stop-opacity=".1"/><stop offset="1" stop-opacity=".1"/></linearGradient><clipPath id="r"><rect width="114" height="20" rx="3" fill="#fff"/></clipPath><g clip-path="url(#r)"><rect width="61" height="20" fill="#555"/><rect x="61" width="53" height="20" fill="#e05d44"/><rect width="114" height="20" fill="url(#s)"/></g><g fill="#fff" text-anchor="middle" font-family="Verdana,Geneva,DejaVu Sans,sans-serif" text-rendering="geometricPrecision" font-size="110"><text aria-hidden="true" x="315" y="150" fill="#010101" fill-opacity=".3" transform="scale(.1)" textLength="510">coverage</text><text x="315" y="140" transform="scale(.1)" fill="#fff" textLength="510">coverage</text><text aria-hidden="true" x="865" y="150" fill="#010101" fill-opacity=".3" transform="scale(.1)" textLength="430">40.58%</text><text x="865" y="140" transform="scale(.1)" fill="#fff" textLength="430">40.58%</text></g></svg>
\ No newline at end of file
diff --git a/_static/reports/coverage/coverage.xml b/_static/reports/coverage/coverage.xml
index 592da469..a65207aa 100644
--- a/_static/reports/coverage/coverage.xml
+++ b/_static/reports/coverage/coverage.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" ?>
-<coverage version="7.6.0" timestamp="1722209737723" lines-valid="1598" lines-covered="652" line-rate="0.408" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
+<coverage version="7.6.0" timestamp="1722209928801" lines-valid="1592" lines-covered="646" line-rate="0.4058" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
 	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.6.0 -->
 	<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
 	<sources>
@@ -14,15 +14,11 @@
 						<line number="7" hits="1"/>
 						<line number="9" hits="1"/>
 						<line number="10" hits="1"/>
-						<line number="13" hits="1"/>
-						<line number="15" hits="1"/>
-						<line number="16" hits="1"/>
-						<line number="17" hits="1"/>
 					</lines>
 				</class>
 			</classes>
 		</package>
-		<package name="mtbp3.health" line-rate="0.3339" branch-rate="0" complexity="0">
+		<package name="mtbp3.health" line-rate="0.3316" branch-rate="0" complexity="0">
 			<classes>
 				<class name="__init__.py" filename="mtbp3/health/__init__.py" complexity="0" line-rate="1" branch-rate="0">
 					<methods/>
@@ -122,13 +118,13 @@
 						<line number="181" hits="0"/>
 					</lines>
 				</class>
-				<class name="ectd.py" filename="mtbp3/health/ectd.py" complexity="0" line-rate="0.4176" branch-rate="0">
+				<class name="ectd.py" filename="mtbp3/health/ectd.py" complexity="0" line-rate="0.4111" branch-rate="0">
 					<methods/>
 					<lines>
 						<line number="16" hits="1"/>
 						<line number="17" hits="1"/>
 						<line number="18" hits="1"/>
-						<line number="19" hits="1"/>
+						<line number="20" hits="1"/>
 						<line number="21" hits="1"/>
 						<line number="22" hits="1"/>
 						<line number="23" hits="1"/>
@@ -137,24 +133,24 @@
 						<line number="26" hits="1"/>
 						<line number="27" hits="1"/>
 						<line number="28" hits="1"/>
-						<line number="29" hits="1"/>
-						<line number="31" hits="1"/>
+						<line number="30" hits="1"/>
+						<line number="32" hits="1"/>
 						<line number="33" hits="1"/>
 						<line number="34" hits="1"/>
 						<line number="35" hits="1"/>
 						<line number="36" hits="1"/>
 						<line number="37" hits="1"/>
-						<line number="38" hits="1"/>
+						<line number="39" hits="0"/>
 						<line number="40" hits="0"/>
-						<line number="41" hits="0"/>
+						<line number="42" hits="1"/>
 						<line number="43" hits="1"/>
-						<line number="44" hits="1"/>
-						<line number="45" hits="0"/>
+						<line number="44" hits="0"/>
+						<line number="46" hits="1"/>
 						<line number="47" hits="1"/>
 						<line number="48" hits="1"/>
-						<line number="49" hits="1"/>
+						<line number="50" hits="1"/>
 						<line number="51" hits="1"/>
-						<line number="52" hits="1"/>
+						<line number="52" hits="0"/>
 						<line number="53" hits="0"/>
 						<line number="54" hits="0"/>
 						<line number="55" hits="0"/>
@@ -162,8 +158,8 @@
 						<line number="57" hits="0"/>
 						<line number="58" hits="0"/>
 						<line number="59" hits="0"/>
-						<line number="60" hits="0"/>
-						<line number="62" hits="0"/>
+						<line number="61" hits="0"/>
+						<line number="63" hits="0"/>
 						<line number="64" hits="0"/>
 						<line number="65" hits="0"/>
 						<line number="66" hits="0"/>
@@ -173,20 +169,20 @@
 						<line number="70" hits="0"/>
 						<line number="71" hits="0"/>
 						<line number="72" hits="0"/>
-						<line number="73" hits="0"/>
-						<line number="75" hits="0"/>
+						<line number="74" hits="0"/>
+						<line number="76" hits="1"/>
 						<line number="77" hits="1"/>
 						<line number="78" hits="1"/>
-						<line number="79" hits="1"/>
+						<line number="79" hits="0"/>
 						<line number="80" hits="0"/>
-						<line number="81" hits="0"/>
-						<line number="83" hits="0"/>
+						<line number="82" hits="0"/>
+						<line number="84" hits="1"/>
 						<line number="85" hits="1"/>
-						<line number="86" hits="1"/>
-						<line number="88" hits="1"/>
+						<line number="87" hits="1"/>
+						<line number="89" hits="1"/>
 						<line number="90" hits="1"/>
 						<line number="91" hits="1"/>
-						<line number="92" hits="1"/>
+						<line number="92" hits="0"/>
 						<line number="93" hits="0"/>
 						<line number="94" hits="0"/>
 						<line number="95" hits="0"/>
@@ -195,7 +191,7 @@
 						<line number="98" hits="0"/>
 						<line number="99" hits="0"/>
 						<line number="100" hits="0"/>
-						<line number="101" hits="0"/>
+						<line number="102" hits="0"/>
 						<line number="103" hits="0"/>
 						<line number="104" hits="0"/>
 						<line number="105" hits="0"/>
@@ -204,21 +200,20 @@
 						<line number="108" hits="0"/>
 						<line number="109" hits="0"/>
 						<line number="110" hits="0"/>
-						<line number="111" hits="0"/>
+						<line number="112" hits="0"/>
 						<line number="113" hits="0"/>
-						<line number="114" hits="0"/>
+						<line number="115" hits="0"/>
 						<line number="116" hits="0"/>
-						<line number="117" hits="0"/>
-						<line number="119" hits="1"/>
-						<line number="121" hits="1"/>
+						<line number="118" hits="1"/>
+						<line number="120" hits="1"/>
+						<line number="121" hits="0"/>
 						<line number="122" hits="0"/>
 						<line number="123" hits="0"/>
 						<line number="124" hits="0"/>
 						<line number="125" hits="0"/>
-						<line number="126" hits="0"/>
 					</lines>
 				</class>
-				<class name="emt.py" filename="mtbp3/health/emt.py" complexity="0" line-rate="0.3864" branch-rate="0">
+				<class name="emt.py" filename="mtbp3/health/emt.py" complexity="0" line-rate="0.3848" branch-rate="0">
 					<methods/>
 					<lines>
 						<line number="16" hits="1"/>
@@ -228,14 +223,14 @@
 						<line number="20" hits="1"/>
 						<line number="21" hits="1"/>
 						<line number="22" hits="1"/>
-						<line number="23" hits="1"/>
-						<line number="25" hits="1"/>
-						<line number="38" hits="1"/>
-						<line number="46" hits="1"/>
+						<line number="24" hits="1"/>
+						<line number="37" hits="1"/>
+						<line number="45" hits="1"/>
+						<line number="46" hits="0"/>
 						<line number="47" hits="0"/>
-						<line number="48" hits="0"/>
+						<line number="49" hits="1"/>
 						<line number="50" hits="1"/>
-						<line number="51" hits="1"/>
+						<line number="52" hits="1"/>
 						<line number="53" hits="1"/>
 						<line number="54" hits="1"/>
 						<line number="55" hits="1"/>
@@ -248,7 +243,7 @@
 						<line number="62" hits="1"/>
 						<line number="63" hits="1"/>
 						<line number="64" hits="1"/>
-						<line number="65" hits="1"/>
+						<line number="66" hits="1"/>
 						<line number="67" hits="1"/>
 						<line number="68" hits="1"/>
 						<line number="69" hits="1"/>
@@ -256,167 +251,167 @@
 						<line number="71" hits="1"/>
 						<line number="72" hits="1"/>
 						<line number="73" hits="1"/>
-						<line number="74" hits="1"/>
-						<line number="76" hits="0"/>
+						<line number="75" hits="0"/>
+						<line number="77" hits="1"/>
 						<line number="78" hits="1"/>
 						<line number="79" hits="1"/>
 						<line number="80" hits="1"/>
-						<line number="81" hits="1"/>
-						<line number="83" hits="0"/>
+						<line number="82" hits="0"/>
+						<line number="84" hits="1"/>
 						<line number="85" hits="1"/>
 						<line number="86" hits="1"/>
 						<line number="87" hits="1"/>
 						<line number="88" hits="1"/>
 						<line number="89" hits="1"/>
 						<line number="90" hits="1"/>
-						<line number="91" hits="1"/>
-						<line number="93" hits="1"/>
-						<line number="100" hits="1"/>
-						<line number="110" hits="1"/>
+						<line number="92" hits="1"/>
+						<line number="99" hits="1"/>
+						<line number="109" hits="1"/>
+						<line number="114" hits="1"/>
 						<line number="115" hits="1"/>
-						<line number="116" hits="1"/>
+						<line number="119" hits="1"/>
 						<line number="120" hits="1"/>
-						<line number="121" hits="1"/>
-						<line number="123" hits="1"/>
+						<line number="122" hits="1"/>
+						<line number="129" hits="1"/>
 						<line number="130" hits="1"/>
 						<line number="131" hits="1"/>
-						<line number="132" hits="1"/>
+						<line number="133" hits="1"/>
 						<line number="134" hits="1"/>
 						<line number="135" hits="1"/>
-						<line number="136" hits="1"/>
-						<line number="137" hits="0"/>
+						<line number="136" hits="0"/>
+						<line number="138" hits="1"/>
 						<line number="139" hits="1"/>
-						<line number="140" hits="1"/>
+						<line number="141" hits="1"/>
 						<line number="142" hits="1"/>
 						<line number="143" hits="1"/>
-						<line number="144" hits="1"/>
-						<line number="146" hits="0"/>
+						<line number="145" hits="0"/>
+						<line number="147" hits="1"/>
 						<line number="148" hits="1"/>
 						<line number="149" hits="1"/>
 						<line number="150" hits="1"/>
 						<line number="151" hits="1"/>
 						<line number="152" hits="1"/>
 						<line number="153" hits="1"/>
-						<line number="154" hits="1"/>
-						<line number="157" hits="1"/>
+						<line number="156" hits="1"/>
+						<line number="163" hits="1"/>
 						<line number="164" hits="1"/>
 						<line number="165" hits="1"/>
-						<line number="166" hits="1"/>
-						<line number="168" hits="1"/>
-						<line number="182" hits="1"/>
-						<line number="184" hits="1"/>
-						<line number="198" hits="1"/>
-						<line number="200" hits="1"/>
-						<line number="214" hits="1"/>
-						<line number="216" hits="1"/>
-						<line number="230" hits="1"/>
-						<line number="232" hits="1"/>
+						<line number="167" hits="1"/>
+						<line number="181" hits="1"/>
+						<line number="183" hits="1"/>
+						<line number="197" hits="1"/>
+						<line number="199" hits="1"/>
+						<line number="213" hits="1"/>
+						<line number="215" hits="1"/>
+						<line number="229" hits="1"/>
+						<line number="231" hits="1"/>
+						<line number="245" hits="1"/>
 						<line number="246" hits="1"/>
-						<line number="247" hits="1"/>
-						<line number="249" hits="1"/>
-						<line number="259" hits="1"/>
-						<line number="260" hits="0"/>
-						<line number="261" hits="1"/>
-						<line number="263" hits="1"/>
+						<line number="248" hits="1"/>
+						<line number="258" hits="1"/>
+						<line number="259" hits="0"/>
+						<line number="260" hits="1"/>
+						<line number="262" hits="1"/>
+						<line number="277" hits="1"/>
 						<line number="278" hits="1"/>
 						<line number="279" hits="1"/>
-						<line number="280" hits="1"/>
+						<line number="280" hits="0"/>
 						<line number="281" hits="0"/>
-						<line number="282" hits="0"/>
+						<line number="283" hits="0"/>
 						<line number="284" hits="0"/>
 						<line number="285" hits="0"/>
-						<line number="286" hits="0"/>
-						<line number="288" hits="0"/>
+						<line number="287" hits="0"/>
+						<line number="289" hits="1"/>
 						<line number="290" hits="1"/>
-						<line number="291" hits="1"/>
-						<line number="292" hits="0"/>
-						<line number="294" hits="1"/>
-						<line number="296" hits="1"/>
-						<line number="297" hits="0"/>
+						<line number="291" hits="0"/>
+						<line number="293" hits="1"/>
+						<line number="295" hits="1"/>
+						<line number="296" hits="0"/>
+						<line number="297" hits="1"/>
 						<line number="298" hits="1"/>
-						<line number="299" hits="1"/>
-						<line number="301" hits="1"/>
-						<line number="304" hits="1"/>
-						<line number="305" hits="0"/>
-						<line number="307" hits="1"/>
-						<line number="308" hits="0"/>
+						<line number="300" hits="1"/>
+						<line number="303" hits="1"/>
+						<line number="304" hits="0"/>
+						<line number="306" hits="1"/>
+						<line number="307" hits="0"/>
+						<line number="309" hits="1"/>
 						<line number="310" hits="1"/>
-						<line number="311" hits="1"/>
-						<line number="312" hits="0"/>
-						<line number="313" hits="1"/>
-						<line number="314" hits="0"/>
-						<line number="315" hits="1"/>
-						<line number="317" hits="1"/>
+						<line number="311" hits="0"/>
+						<line number="312" hits="1"/>
+						<line number="313" hits="0"/>
+						<line number="314" hits="1"/>
+						<line number="316" hits="1"/>
+						<line number="332" hits="1"/>
 						<line number="333" hits="1"/>
 						<line number="334" hits="1"/>
 						<line number="335" hits="1"/>
 						<line number="336" hits="1"/>
 						<line number="337" hits="1"/>
-						<line number="338" hits="1"/>
+						<line number="339" hits="1"/>
 						<line number="340" hits="1"/>
 						<line number="341" hits="1"/>
 						<line number="342" hits="1"/>
 						<line number="343" hits="1"/>
-						<line number="344" hits="1"/>
-						<line number="346" hits="0"/>
-						<line number="348" hits="1"/>
+						<line number="345" hits="0"/>
+						<line number="347" hits="1"/>
+						<line number="349" hits="1"/>
 						<line number="350" hits="1"/>
-						<line number="351" hits="1"/>
-						<line number="352" hits="0"/>
+						<line number="351" hits="0"/>
+						<line number="353" hits="1"/>
 						<line number="354" hits="1"/>
-						<line number="355" hits="1"/>
+						<line number="355" hits="0"/>
 						<line number="356" hits="0"/>
 						<line number="357" hits="0"/>
-						<line number="358" hits="0"/>
-						<line number="360" hits="1"/>
+						<line number="359" hits="1"/>
+						<line number="361" hits="1"/>
 						<line number="362" hits="1"/>
-						<line number="363" hits="1"/>
-						<line number="365" hits="1"/>
+						<line number="364" hits="1"/>
+						<line number="378" hits="1"/>
 						<line number="379" hits="1"/>
-						<line number="380" hits="1"/>
-						<line number="381" hits="0"/>
+						<line number="380" hits="0"/>
+						<line number="381" hits="1"/>
 						<line number="382" hits="1"/>
-						<line number="383" hits="1"/>
-						<line number="384" hits="0"/>
-						<line number="386" hits="1"/>
+						<line number="383" hits="0"/>
+						<line number="385" hits="1"/>
+						<line number="387" hits="1"/>
 						<line number="388" hits="1"/>
 						<line number="389" hits="1"/>
-						<line number="390" hits="1"/>
+						<line number="391" hits="1"/>
 						<line number="392" hits="1"/>
-						<line number="393" hits="1"/>
-						<line number="395" hits="1"/>
-						<line number="398" hits="1"/>
+						<line number="394" hits="1"/>
+						<line number="397" hits="1"/>
+						<line number="408" hits="0"/>
 						<line number="409" hits="0"/>
 						<line number="410" hits="0"/>
 						<line number="411" hits="0"/>
 						<line number="412" hits="0"/>
-						<line number="413" hits="0"/>
-						<line number="415" hits="0"/>
+						<line number="414" hits="0"/>
+						<line number="416" hits="0"/>
 						<line number="417" hits="0"/>
-						<line number="418" hits="0"/>
-						<line number="420" hits="0"/>
+						<line number="419" hits="0"/>
+						<line number="421" hits="0"/>
 						<line number="422" hits="0"/>
-						<line number="423" hits="0"/>
-						<line number="425" hits="0"/>
-						<line number="427" hits="1"/>
+						<line number="424" hits="0"/>
+						<line number="426" hits="1"/>
+						<line number="439" hits="0"/>
 						<line number="440" hits="0"/>
 						<line number="441" hits="0"/>
-						<line number="442" hits="0"/>
-						<line number="444" hits="1"/>
+						<line number="443" hits="1"/>
+						<line number="456" hits="0"/>
 						<line number="457" hits="0"/>
-						<line number="458" hits="0"/>
+						<line number="459" hits="0"/>
 						<line number="460" hits="0"/>
-						<line number="461" hits="0"/>
-						<line number="463" hits="0"/>
+						<line number="462" hits="0"/>
+						<line number="464" hits="0"/>
 						<line number="465" hits="0"/>
 						<line number="466" hits="0"/>
 						<line number="467" hits="0"/>
-						<line number="468" hits="0"/>
+						<line number="469" hits="0"/>
 						<line number="470" hits="0"/>
-						<line number="471" hits="0"/>
-						<line number="473" hits="0"/>
-						<line number="475" hits="0"/>
-						<line number="477" hits="1"/>
+						<line number="472" hits="0"/>
+						<line number="474" hits="0"/>
+						<line number="476" hits="1"/>
+						<line number="477" hits="0"/>
 						<line number="478" hits="0"/>
 						<line number="479" hits="0"/>
 						<line number="480" hits="0"/>
@@ -436,47 +431,47 @@
 						<line number="494" hits="0"/>
 						<line number="495" hits="0"/>
 						<line number="496" hits="0"/>
-						<line number="497" hits="0"/>
-						<line number="499" hits="1"/>
+						<line number="498" hits="1"/>
+						<line number="512" hits="0"/>
 						<line number="513" hits="0"/>
 						<line number="514" hits="0"/>
-						<line number="515" hits="0"/>
-						<line number="517" hits="0"/>
-						<line number="519" hits="0"/>
+						<line number="516" hits="0"/>
+						<line number="518" hits="0"/>
+						<line number="520" hits="0"/>
 						<line number="521" hits="0"/>
-						<line number="522" hits="0"/>
+						<line number="523" hits="0"/>
 						<line number="524" hits="0"/>
 						<line number="525" hits="0"/>
-						<line number="526" hits="0"/>
+						<line number="527" hits="0"/>
 						<line number="528" hits="0"/>
-						<line number="529" hits="0"/>
+						<line number="530" hits="0"/>
 						<line number="531" hits="0"/>
-						<line number="532" hits="0"/>
+						<line number="533" hits="0"/>
 						<line number="534" hits="0"/>
-						<line number="535" hits="0"/>
+						<line number="536" hits="0"/>
 						<line number="537" hits="0"/>
-						<line number="538" hits="0"/>
+						<line number="539" hits="0"/>
 						<line number="540" hits="0"/>
-						<line number="541" hits="0"/>
-						<line number="543" hits="1"/>
+						<line number="542" hits="1"/>
+						<line number="553" hits="0"/>
 						<line number="554" hits="0"/>
-						<line number="555" hits="0"/>
+						<line number="556" hits="0"/>
 						<line number="557" hits="0"/>
 						<line number="558" hits="0"/>
 						<line number="559" hits="0"/>
 						<line number="560" hits="0"/>
 						<line number="561" hits="0"/>
-						<line number="562" hits="0"/>
-						<line number="564" hits="0"/>
+						<line number="563" hits="0"/>
+						<line number="565" hits="0"/>
 						<line number="566" hits="0"/>
 						<line number="567" hits="0"/>
 						<line number="568" hits="0"/>
-						<line number="569" hits="0"/>
+						<line number="570" hits="0"/>
 						<line number="571" hits="0"/>
-						<line number="572" hits="0"/>
+						<line number="573" hits="0"/>
 						<line number="574" hits="0"/>
-						<line number="575" hits="0"/>
-						<line number="577" hits="0"/>
+						<line number="576" hits="0"/>
+						<line number="579" hits="0"/>
 						<line number="580" hits="0"/>
 						<line number="581" hits="0"/>
 						<line number="582" hits="0"/>
@@ -488,32 +483,32 @@
 						<line number="588" hits="0"/>
 						<line number="589" hits="0"/>
 						<line number="590" hits="0"/>
-						<line number="591" hits="0"/>
+						<line number="592" hits="0"/>
 						<line number="593" hits="0"/>
 						<line number="594" hits="0"/>
 						<line number="595" hits="0"/>
-						<line number="596" hits="0"/>
-						<line number="598" hits="0"/>
-						<line number="600" hits="0"/>
+						<line number="597" hits="0"/>
+						<line number="599" hits="0"/>
+						<line number="601" hits="0"/>
 						<line number="602" hits="0"/>
-						<line number="603" hits="0"/>
+						<line number="604" hits="0"/>
 						<line number="605" hits="0"/>
 						<line number="606" hits="0"/>
-						<line number="607" hits="0"/>
-						<line number="609" hits="1"/>
+						<line number="608" hits="1"/>
+						<line number="609" hits="0"/>
 						<line number="610" hits="0"/>
 						<line number="611" hits="0"/>
-						<line number="612" hits="0"/>
+						<line number="613" hits="0"/>
 						<line number="614" hits="0"/>
 						<line number="615" hits="0"/>
 						<line number="616" hits="0"/>
 						<line number="617" hits="0"/>
-						<line number="618" hits="0"/>
+						<line number="619" hits="0"/>
 						<line number="620" hits="0"/>
 						<line number="621" hits="0"/>
 						<line number="622" hits="0"/>
-						<line number="623" hits="0"/>
-						<line number="625" hits="1"/>
+						<line number="624" hits="1"/>
+						<line number="625" hits="0"/>
 						<line number="626" hits="0"/>
 						<line number="627" hits="0"/>
 						<line number="628" hits="0"/>
@@ -521,12 +516,12 @@
 						<line number="630" hits="0"/>
 						<line number="631" hits="0"/>
 						<line number="632" hits="0"/>
-						<line number="633" hits="0"/>
-						<line number="635" hits="1"/>
+						<line number="634" hits="1"/>
+						<line number="635" hits="0"/>
 						<line number="636" hits="0"/>
 						<line number="637" hits="0"/>
-						<line number="638" hits="0"/>
-						<line number="640" hits="1"/>
+						<line number="639" hits="1"/>
+						<line number="640" hits="0"/>
 						<line number="641" hits="0"/>
 						<line number="642" hits="0"/>
 						<line number="643" hits="0"/>
@@ -539,24 +534,24 @@
 						<line number="650" hits="0"/>
 						<line number="651" hits="0"/>
 						<line number="652" hits="0"/>
-						<line number="653" hits="0"/>
-						<line number="655" hits="0"/>
-						<line number="657" hits="1"/>
+						<line number="654" hits="0"/>
+						<line number="656" hits="1"/>
+						<line number="663" hits="0"/>
 						<line number="664" hits="0"/>
 						<line number="665" hits="0"/>
-						<line number="666" hits="0"/>
+						<line number="667" hits="0"/>
 						<line number="668" hits="0"/>
 						<line number="669" hits="0"/>
-						<line number="670" hits="0"/>
-						<line number="672" hits="1"/>
+						<line number="671" hits="1"/>
+						<line number="684" hits="0"/>
 						<line number="685" hits="0"/>
-						<line number="686" hits="0"/>
+						<line number="687" hits="0"/>
 						<line number="688" hits="0"/>
-						<line number="689" hits="0"/>
+						<line number="690" hits="0"/>
 						<line number="691" hits="0"/>
 						<line number="692" hits="0"/>
-						<line number="693" hits="0"/>
-						<line number="695" hits="1"/>
+						<line number="694" hits="1"/>
+						<line number="705" hits="0"/>
 						<line number="706" hits="0"/>
 						<line number="707" hits="0"/>
 						<line number="708" hits="0"/>
@@ -564,59 +559,58 @@
 						<line number="710" hits="0"/>
 						<line number="711" hits="0"/>
 						<line number="712" hits="0"/>
-						<line number="713" hits="0"/>
-						<line number="715" hits="0"/>
+						<line number="714" hits="0"/>
+						<line number="716" hits="0"/>
 						<line number="717" hits="0"/>
-						<line number="718" hits="0"/>
+						<line number="719" hits="0"/>
 						<line number="720" hits="0"/>
 						<line number="721" hits="0"/>
-						<line number="722" hits="0"/>
-						<line number="724" hits="0"/>
+						<line number="723" hits="0"/>
+						<line number="725" hits="0"/>
 						<line number="726" hits="0"/>
 						<line number="727" hits="0"/>
-						<line number="728" hits="0"/>
-						<line number="731" hits="1"/>
-						<line number="732" hits="0"/>
+						<line number="730" hits="1"/>
+						<line number="731" hits="0"/>
+						<line number="733" hits="0"/>
 						<line number="734" hits="0"/>
 						<line number="735" hits="0"/>
 						<line number="736" hits="0"/>
 						<line number="737" hits="0"/>
 						<line number="738" hits="0"/>
 						<line number="739" hits="0"/>
-						<line number="740" hits="0"/>
+						<line number="741" hits="0"/>
 						<line number="742" hits="0"/>
-						<line number="743" hits="0"/>
+						<line number="744" hits="0"/>
 						<line number="745" hits="0"/>
 						<line number="746" hits="0"/>
-						<line number="747" hits="0"/>
+						<line number="748" hits="0"/>
 						<line number="749" hits="0"/>
 						<line number="750" hits="0"/>
 						<line number="751" hits="0"/>
-						<line number="752" hits="0"/>
+						<line number="753" hits="0"/>
 						<line number="754" hits="0"/>
 						<line number="755" hits="0"/>
-						<line number="756" hits="0"/>
+						<line number="757" hits="0"/>
 						<line number="758" hits="0"/>
 						<line number="759" hits="0"/>
 						<line number="760" hits="0"/>
 						<line number="761" hits="0"/>
 						<line number="762" hits="0"/>
-						<line number="763" hits="0"/>
+						<line number="764" hits="0"/>
 						<line number="765" hits="0"/>
 						<line number="766" hits="0"/>
 						<line number="767" hits="0"/>
-						<line number="768" hits="0"/>
+						<line number="769" hits="0"/>
 						<line number="770" hits="0"/>
 						<line number="771" hits="0"/>
-						<line number="772" hits="0"/>
+						<line number="773" hits="0"/>
 						<line number="774" hits="0"/>
-						<line number="775" hits="0"/>
+						<line number="776" hits="0"/>
 						<line number="777" hits="0"/>
 						<line number="778" hits="0"/>
 						<line number="779" hits="0"/>
-						<line number="780" hits="0"/>
-						<line number="782" hits="1"/>
-						<line number="783" hits="0"/>
+						<line number="781" hits="1"/>
+						<line number="782" hits="0"/>
 					</lines>
 				</class>
 			</classes>
diff --git a/_static/reports/junit/junit.xml b/_static/reports/junit/junit.xml
index 80c13fbd..749f7cfb 100644
--- a/_static/reports/junit/junit.xml
+++ b/_static/reports/junit/junit.xml
@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="38" time="10.619" timestamp="2024-07-28T23:35:17.508267+00:00" hostname="fv-az1116-644"><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_invalid_input" time="0.002" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_missing_column" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_with_difference" time="0.005" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_without_difference" time="0.002" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_existing_column" time="0.009" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_non_existing_column" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_non_existing_group" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_same_group_and_column" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words_invalid_include" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words_invalid_outfmt" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_load_list" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_show_ctoc_tree" time="0.199" /><testcase classname="tests.test_health_emt.TestEmt" name="test_expected_file_lists" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_files" time="0.005" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_hlgt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_hlt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_llt" time="0.007" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt_given_soc" time="0.006" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt_given_soc_primary_only" time="0.006" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_soc" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_list_files" time="0.025" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_dataframe" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_json" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_list" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_string" time="0.000" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_tree" time="0.013" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_tree2" time="0.008" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_calculate_kendall_tau_with_dataframe" time="0.002" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_calculate_kendall_tau_with_list" time="0.002" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_plot_y_list" time="0.017" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_bootstrap_cohen_ci" time="0.224" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_cohen" time="0.068" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_fleiss_kappa" time="0.065" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_compare_file_size" time="0.779" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_get_outline_list" time="0.867" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_show_outline_tree" time="0.847" /></testsuite></testsuites>
\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="38" time="8.405" timestamp="2024-07-28T23:38:30.914192+00:00" hostname="fv-az1490-50"><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_invalid_input" time="0.002" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_missing_column" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_with_difference" time="0.005" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_without_difference" time="0.002" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_existing_column" time="0.009" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_non_existing_column" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_non_existing_group" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_same_group_and_column" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words_invalid_include" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words_invalid_outfmt" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_load_list" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_show_ctoc_tree" time="0.193" /><testcase classname="tests.test_health_emt.TestEmt" name="test_expected_file_lists" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_files" time="0.005" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_hlgt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_hlt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_llt" time="0.007" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt_given_soc" time="0.006" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt_given_soc_primary_only" time="0.006" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_soc" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_list_files" time="0.024" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_dataframe" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_json" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_list" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_string" time="0.000" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_tree" time="0.013" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_tree2" time="0.008" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_calculate_kendall_tau_with_dataframe" time="0.002" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_calculate_kendall_tau_with_list" time="0.002" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_plot_y_list" time="0.016" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_bootstrap_cohen_ci" time="0.223" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_cohen" time="0.065" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_fleiss_kappa" time="0.064" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_compare_file_size" time="0.744" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_get_outline_list" time="0.838" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_show_outline_tree" time="0.808" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/_static/reports/junit/report.html b/_static/reports/junit/report.html
index 2a6ca09a..bace7f2d 100644
--- a/_static/reports/junit/report.html
+++ b/_static/reports/junit/report.html
@@ -328,7 +328,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 28-Jul-2024 at 23:35:28 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 28-Jul-2024 at 23:38:39 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -429,7 +429,7 @@ <h2>Summary</h2>
     </table>
   </body>
   <footer>
-    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.10.14&#34;, &#34;Platform&#34;: &#34;Linux-6.5.0-1024-azure-x86_64-with-glibc2.35&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.3.2&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;html&#34;: &#34;4.1.1&#34;, &#34;metadata&#34;: &#34;3.1.1&#34;}, &#34;CI&#34;: &#34;true&#34;, &#34;JAVA_HOME&#34;: &#34;/usr/lib/jvm/temurin-11-jdk-amd64&#34;}, &#34;tests&#34;: {&#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;, &#34;duration&#34;: &#34;9 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;9 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;, &#34;duration&#34;: &#34;199 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;199 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_expected_file_lists&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlgt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;, &#34;duration&#34;: &#34;7 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_llt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;7 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;, &#34;duration&#34;: &#34;25 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_list_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;25 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_json&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;, &#34;duration&#34;: &#34;0 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_string&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;0 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;, &#34;duration&#34;: &#34;13 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;13 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;, &#34;duration&#34;: &#34;8 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;8 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;, &#34;duration&#34;: &#34;17 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;17 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;, &#34;duration&#34;: &#34;224 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;224 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;, &#34;duration&#34;: &#34;68 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;68 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;, &#34;duration&#34;: &#34;65 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;65 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;, &#34;duration&#34;: &#34;779 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;779 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;, &#34;duration&#34;: &#34;867 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;867 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;, &#34;duration&#34;: &#34;847 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;847 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
+    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.10.14&#34;, &#34;Platform&#34;: &#34;Linux-6.5.0-1024-azure-x86_64-with-glibc2.35&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.3.2&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;html&#34;: &#34;4.1.1&#34;, &#34;metadata&#34;: &#34;3.1.1&#34;}, &#34;CI&#34;: &#34;true&#34;, &#34;JAVA_HOME&#34;: &#34;/usr/lib/jvm/temurin-11-jdk-amd64&#34;}, &#34;tests&#34;: {&#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_invalid_input&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_missing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_with_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_1df_without_difference&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&#34;, &#34;duration&#34;: &#34;9 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;9 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_same_group_and_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_include&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_find_section_given_words_invalid_outfmt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_load_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&#34;, &#34;duration&#34;: &#34;193 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_ectd.py::TestCtocByFDA::test_show_ctoc_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;193 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt\n&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_expected_file_lists&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_expected_file_lists&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_files&#34;, &#34;duration&#34;: &#34;5 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;5 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlgt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_llt&#34;, &#34;duration&#34;: &#34;7 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_llt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;7 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc_primary_only&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;6 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;, &#34;duration&#34;: &#34;24 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_list_files&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;24 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_json&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_json&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_list&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_string&#34;, &#34;duration&#34;: &#34;0 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_string&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;0 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;, &#34;duration&#34;: &#34;13 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;13 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;, &#34;duration&#34;: &#34;8 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;8 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_dataframe&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;, &#34;duration&#34;: &#34;16 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;16 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;, &#34;duration&#34;: &#34;223 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;223 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;, &#34;duration&#34;: &#34;65 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;65 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;, &#34;duration&#34;: &#34;64 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;64 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&#34;, &#34;duration&#34;: &#34;744 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;744 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;, &#34;duration&#34;: &#34;838 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;838 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;, &#34;duration&#34;: &#34;808 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;808 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
     <script>
       (function(){function r(e,n,t){function o(i,f){if(!n[i]){if(!e[i]){var c="function"==typeof require&&require;if(!f&&c)return c(i,!0);if(u)return u(i,!0);var a=new Error("Cannot find module '"+i+"'");throw a.code="MODULE_NOT_FOUND",a}var p=n[i]={exports:{}};e[i][0].call(p.exports,function(r){var n=e[i][1][r];return o(n||r)},p,p.exports,r,e,n,t)}return n[i].exports}for(var u="function"==typeof require&&require,i=0;i<t.length;i++)o(t[i]);return o}return r})()({1:[function(require,module,exports){
 const { getCollapsedCategory, setCollapsedIds } = require('./storage.js')
diff --git a/autoapi/mtbp3/index.html b/autoapi/mtbp3/index.html
index 1633f410..41fe1375 100644
--- a/autoapi/mtbp3/index.html
+++ b/autoapi/mtbp3/index.html
@@ -90,8 +90,6 @@
 <li class="toctree-l4"><a class="reference internal" href="#mtbp3.ListTree"><code class="docutils literal notranslate"><span class="pre">ListTree</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="#mtbp3.catPlotter"><code class="docutils literal notranslate"><span class="pre">catPlotter</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="#mtbp3.__version__"><code class="docutils literal notranslate"><span class="pre">__version__</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="#id0"><code class="docutils literal notranslate"><span class="pre">_ROOT</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="#id3"><code class="docutils literal notranslate"><span class="pre">get_data()</span></code></a></li>
 </ul>
 </li>
 </ul>
@@ -145,15 +143,12 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Link to this hea
 <h2>Attributes<a class="headerlink" href="#attributes" title="Link to this heading"></a></h2>
 <table class="autosummary longtable docutils align-default">
 <tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="#id0" title="mtbp3._ROOT"><code class="xref py py-obj docutils literal notranslate"><span class="pre">_ROOT</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="#mtbp3._ROOT" title="mtbp3._ROOT"><code class="xref py py-obj docutils literal notranslate"><span class="pre">_ROOT</span></code></a></p></td>
 <td><p></p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="#mtbp3.__version__" title="mtbp3.__version__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__version__</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="#id0" title="mtbp3._ROOT"><code class="xref py py-obj docutils literal notranslate"><span class="pre">_ROOT</span></code></a></p></td>
-<td><p></p></td>
-</tr>
 </tbody>
 </table>
 </section>
@@ -177,7 +172,7 @@ <h2>Classes<a class="headerlink" href="#classes" title="Link to this heading">
 <h2>Functions<a class="headerlink" href="#functions" title="Link to this heading"></a></h2>
 <table class="autosummary longtable docutils align-default">
 <tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="#id3" title="mtbp3.get_data"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_data</span></code></a>(path)</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="#mtbp3.get_data" title="mtbp3.get_data"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_data</span></code></a>(path)</p></td>
 <td><p></p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="#mtbp3.diff_2cols_in_1df" title="mtbp3.diff_2cols_in_1df"><code class="xref py py-obj docutils literal notranslate"><span class="pre">diff_2cols_in_1df</span></code></a>(df[, col1, col2, keep_diff_only])</p></td>
@@ -189,9 +184,6 @@ <h2>Functions<a class="headerlink" href="#functions" title="Link to this heading
 <tr class="row-even"><td><p><a class="reference internal" href="#mtbp3.summarize_1nc_by_2group" title="mtbp3.summarize_1nc_by_2group"><code class="xref py py-obj docutils literal notranslate"><span class="pre">summarize_1nc_by_2group</span></code></a>([df, column, cutoff, ...])</p></td>
 <td><p>Create a summary dataframe that shows the percentage of NaN values and values less than a cutoff point in a numerical column.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="#id3" title="mtbp3.get_data"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_data</span></code></a>(path)</p></td>
-<td><p></p></td>
-</tr>
 </tbody>
 </table>
 </section>
@@ -204,7 +196,7 @@ <h2>Package Contents<a class="headerlink" href="#package-contents" title="Link t
 
 <dl class="py function">
 <dt class="sig sig-object py" id="mtbp3.get_data">
-<span class="sig-prename descclassname"><span class="pre">mtbp3.</span></span><span class="sig-name descname"><span class="pre">get_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/mtbp3.html#get_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#mtbp3.get_data" title="Link to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">mtbp3.</span></span><span class="sig-name descname"><span class="pre">get_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/mtbp3/util.html#get_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#mtbp3.get_data" title="Link to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py class">
@@ -617,16 +609,6 @@ <h2>Package Contents<a class="headerlink" href="#package-contents" title="Link t
 <span class="sig-prename descclassname"><span class="pre">mtbp3.</span></span><span class="sig-name descname"><span class="pre">__version__</span></span><a class="headerlink" href="#mtbp3.__version__" title="Link to this definition"></a></dt>
 <dd></dd></dl>
 
-<dl class="py data">
-<dt class="sig sig-object py" id="id0">
-<span class="sig-prename descclassname"><span class="pre">mtbp3.</span></span><span class="sig-name descname"><span class="pre">_ROOT</span></span><a class="headerlink" href="#id0" title="Link to this definition"></a></dt>
-<dd></dd></dl>
-
-<dl class="py function">
-<dt class="sig sig-object py" id="id3">
-<span class="sig-prename descclassname"><span class="pre">mtbp3.</span></span><span class="sig-name descname"><span class="pre">get_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/mtbp3.html#get_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id3" title="Link to this definition"></a></dt>
-<dd></dd></dl>
-
 </section>
 </section>
 
diff --git a/example_cdtg.html b/example_cdtg.html
index cca34ce0..adbf38e6 100644
--- a/example_cdtg.html
+++ b/example_cdtg.html
@@ -133,13 +133,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 38.9% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
-  warnings.warn(msg, UserWarning)
-/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 45.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
-  warnings.warn(msg, UserWarning)
-</pre></div>
-</div>
-<img alt="_images/40c8b41354cba2e6b7259fdf19faaa93344cd4d105ffa85824cf52c7c92f49d4.png" src="_images/40c8b41354cba2e6b7259fdf19faaa93344cd4d105ffa85824cf52c7c92f49d4.png" />
+<img alt="_images/acb5ba945c582c6bb2cbc526a83065de0ed316eb199c397d2ac4a45665eae448.png" src="_images/acb5ba945c582c6bb2cbc526a83065de0ed316eb199c397d2ac4a45665eae448.png" />
 </div>
 </div>
 <p>To create a line plot:</p>
@@ -151,7 +145,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="_images/12aae952faff8d466691aa04932a5d7b8a466e53a6e81326805306ba78c86e5a.png" src="_images/12aae952faff8d466691aa04932a5d7b8a466e53a6e81326805306ba78c86e5a.png" />
+<img alt="_images/0409ff6dc67e70035ddcbeded09aa0b665ebaa29a4fe0eba9ffa333bdc0f3aa5.png" src="_images/0409ff6dc67e70035ddcbeded09aa0b665ebaa29a4fe0eba9ffa333bdc0f3aa5.png" />
 </div>
 </div>
 </section>
diff --git a/example_clinical.html b/example_clinical.html
index 8affd855..c1427479 100644
--- a/example_clinical.html
+++ b/example_clinical.html
@@ -131,8 +131,8 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  meal  calorie
-0  STD1      TRT1  SUBJ01  VISIT1     1     1582
-1  STD1      TRT1  SUBJ01  VISIT1     2      696
+0  STD1      TRT1  SUBJ01  VISIT1     1      803
+1  STD1      TRT1  SUBJ01  VISIT1     2      608
 </pre></div>
 </div>
 </div>
@@ -149,12 +149,12 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  N(0&lt;=X&lt;500)  N(500&lt;=X&lt;1000)  \
-0  STD1      TRT1  SUBJ01  VISIT1            0               1   
-1  STD1      TRT1  SUBJ01  VISIT2            0               0   
+0  STD1      TRT1  SUBJ01  VISIT1            0               2   
+1  STD1      TRT1  SUBJ01  VISIT2            0               1   
 
    N(1000&lt;=V&lt;=2000)  N(all)  
-0                 1       2  
-1                 2       2  
+0                 1       3  
+1                 4       5  
 </pre></div>
 </div>
 </div>
@@ -169,21 +169,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  N(0&lt;=X&lt;3)  N(3&lt;=X&lt;5)  N(5&lt;=V&lt;=7)  N(all)
-0   STD1      TRT1  VISIT1          6          8           6      20
-1   STD1      TRT1  VISIT2          5          7           3      15
-2   STD1      TRT1  VISIT3          0          8           2      10
-3   STD1      TRT1  VISIT4          2          2           0       4
-4   STD1      TRT2  VISIT1          6          6           8      20
-5   STD1      TRT2  VISIT2          5          7           4      16
-6   STD1      TRT2  VISIT3          6          6           0      12
-7   STD1      TRT2  VISIT4          0          1           2       3
-8   STD2      TRT1  VISIT1          5         12           3      20
-9   STD2      TRT1  VISIT2          1          9           2      12
-10  STD2      TRT1  VISIT3          0          3           3       6
-11  STD2      TRT1  VISIT4          1          2           1       4
-12  STD2      TRT2  VISIT1          6         12           2      20
-13  STD2      TRT2  VISIT2          4          9           1      14
-14  STD2      TRT2  VISIT3          2          4           1       7
+0   STD1      TRT1  VISIT1          3         16           1      20
+1   STD1      TRT1  VISIT2          2          7           4      13
+2   STD1      TRT1  VISIT3          2          6           1       9
+3   STD1      TRT1  VISIT4          1          4           0       5
+4   STD1      TRT2  VISIT1          6         13           1      20
+5   STD1      TRT2  VISIT2          2          9           5      16
+6   STD1      TRT2  VISIT3          3          3           3       9
+7   STD1      TRT2  VISIT4          1          2           0       3
+8   STD2      TRT1  VISIT1          2         10           8      20
+9   STD2      TRT1  VISIT2          2         11           2      15
+10  STD2      TRT1  VISIT3          4          5           4      13
+11  STD2      TRT1  VISIT4          0          0           3       3
+12  STD2      TRT2  VISIT1          5         11           4      20
+13  STD2      TRT2  VISIT2          2         10           2      14
+14  STD2      TRT2  VISIT3          2          4           2       8
+15  STD2      TRT2  VISIT4          2          1           1       4
 </pre></div>
 </div>
 </div>
@@ -197,21 +198,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  Sum(0&lt;=X&lt;3)  Sum(3&lt;=X&lt;5)  Sum(5&lt;=V&lt;=7)  Sum(all)
-0   STD1      TRT1  VISIT1           12           29            30        71
-1   STD1      TRT1  VISIT2           10           22            15        47
-2   STD1      TRT1  VISIT3            0           29            10        39
-3   STD1      TRT1  VISIT4            4            7             0        11
-4   STD1      TRT2  VISIT1           12           23            40        75
-5   STD1      TRT2  VISIT2           10           25            20        55
-6   STD1      TRT2  VISIT3           12           19             0        31
-7   STD1      TRT2  VISIT4            0            3            10        13
-8   STD2      TRT1  VISIT1           10           43            15        68
-9   STD2      TRT1  VISIT2            2           34            10        46
-10  STD2      TRT1  VISIT3            0           10            15        25
-11  STD2      TRT1  VISIT4            2            7             5        14
-12  STD2      TRT2  VISIT1           12           40            10        62
-13  STD2      TRT2  VISIT2            8           29             5        42
-14  STD2      TRT2  VISIT3            4           15             5        24
+0   STD1      TRT1  VISIT1            6           55             5        66
+1   STD1      TRT1  VISIT2            4           24            20        48
+2   STD1      TRT1  VISIT3            4           20             5        29
+3   STD1      TRT1  VISIT4            2           16             0        18
+4   STD1      TRT2  VISIT1           12           46             5        63
+5   STD1      TRT2  VISIT2            4           33            25        62
+6   STD1      TRT2  VISIT3            6           12            15        33
+7   STD1      TRT2  VISIT4            2            7             0         9
+8   STD2      TRT1  VISIT1            4           37            40        81
+9   STD2      TRT1  VISIT2            4           38            10        52
+10  STD2      TRT1  VISIT3            8           16            20        44
+11  STD2      TRT1  VISIT4            0            0            15        15
+12  STD2      TRT2  VISIT1           10           36            20        66
+13  STD2      TRT2  VISIT2            4           36            10        50
+14  STD2      TRT2  VISIT3            4           14            10        28
+15  STD2      TRT2  VISIT4            4            3             5        12
 </pre></div>
 </div>
 </div>
diff --git a/example_ectd.html b/example_ectd.html
index 4c2bd3db..ce1776d5 100644
--- a/example_ectd.html
+++ b/example_ectd.html
@@ -143,7 +143,7 @@ <h2>Module 1<a class="headerlink" href="#module-1" title="Link to this heading">
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd3.2.2_ctocv2.3.3.txt
     1 Module 1 Administrative information
     ├── 1.1 Forms [form-type]
     ├── 1.2 Cover letters
@@ -562,9 +562,6 @@ <h2>Module 4<a class="headerlink" href="#module-4" title="Link to this heading">
     └── 4.3 Literature references
 </pre></div>
 </div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
-</pre></div>
-</div>
 </div>
 </div>
 </section>
diff --git a/example_ectd2.html b/example_ectd2.html
index ef9fbdd9..e071cbf6 100644
--- a/example_ectd2.html
+++ b/example_ectd2.html
@@ -143,8 +143,10 @@ <h2>Module 1<a class="headerlink" href="#module-1" title="Link to this heading">
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/work/mtbp3/mtbp3/mtbp3/data/supp_ectd/fda_ectd4.0_ctocv1.0.txt
-    1 Module 1 Administrative information
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/work/mtbp3/mtbp3/mtbp3/util/../data/supp_ectd/fda_ectd4.0_ctocv1.0.txt
+</pre></div>
+</div>
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>    1 Module 1 Administrative information
     ├── 1.1 Forms [Form Type (R)]
     ├── 1.2 Cover letters
     ├── 1.3 Administrative information
@@ -339,9 +341,6 @@ <h2>Module 2<a class="headerlink" href="#module-2" title="Link to this heading">
         └── 2.7.6 Synopses of individual studies
 </pre></div>
 </div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
-</pre></div>
-</div>
 </div>
 </div>
 </section>
diff --git a/example_emt3.html b/example_emt3.html
index 09a56a57..bbac6617 100644
--- a/example_emt3.html
+++ b/example_emt3.html
@@ -206,11 +206,11 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
 <span class="n">Cell</span> <span class="n">In</span><span class="p">[</span><span class="mi">5</span><span class="p">],</span> <span class="n">line</span> <span class="mi">1</span>
 <span class="ne">----&gt; </span><span class="mi">1</span> <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">emt</span><span class="o">.</span><span class="n">show_fmq_tree</span><span class="p">(</span><span class="n">fmq_list</span><span class="p">[:</span><span class="mi">2</span><span class="p">])))</span>
 
-<span class="nn">File ~/work/mtbp3/mtbp3/mtbp3/health/emt.py:779,</span> in <span class="ni">Emt.show_fmq_tree</span><span class="nt">(self, fmq, with_soc, ignore_case, to_right)</span>
-<span class="g g-Whitespace">    </span><span class="mi">777</span> <span class="n">list1</span> <span class="o">=</span> <span class="n">pt_df</span><span class="p">[</span><span class="s1">&#39;fmq_class&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">unique</span><span class="p">()</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
-<span class="g g-Whitespace">    </span><span class="mi">778</span> <span class="n">list2</span> <span class="o">=</span> <span class="n">pt_df</span><span class="p">[</span><span class="s1">&#39;fmq_class_pt&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">unique</span><span class="p">()</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
-<span class="ne">--&gt; </span><span class="mi">779</span> <span class="n">tree</span> <span class="o">=</span> <span class="n">util</span><span class="o">.</span><span class="n">lsr</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;FMQ/&#39;</span><span class="p">]</span><span class="o">+</span><span class="n">list0</span><span class="o">+</span><span class="n">list1</span><span class="o">+</span><span class="n">list2</span><span class="p">)</span>
-<span class="g g-Whitespace">    </span><span class="mi">780</span> <span class="k">return</span> <span class="n">tree</span><span class="o">.</span><span class="n">list_tree</span><span class="p">(</span><span class="n">to_right</span><span class="o">=</span><span class="n">to_right</span><span class="p">)</span>
+<span class="nn">File ~/work/mtbp3/mtbp3/mtbp3/health/emt.py:778,</span> in <span class="ni">Emt.show_fmq_tree</span><span class="nt">(self, fmq, with_soc, ignore_case, to_right)</span>
+<span class="g g-Whitespace">    </span><span class="mi">776</span> <span class="n">list1</span> <span class="o">=</span> <span class="n">pt_df</span><span class="p">[</span><span class="s1">&#39;fmq_class&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">unique</span><span class="p">()</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+<span class="g g-Whitespace">    </span><span class="mi">777</span> <span class="n">list2</span> <span class="o">=</span> <span class="n">pt_df</span><span class="p">[</span><span class="s1">&#39;fmq_class_pt&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">unique</span><span class="p">()</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+<span class="ne">--&gt; </span><span class="mi">778</span> <span class="n">tree</span> <span class="o">=</span> <span class="n">util</span><span class="o">.</span><span class="n">lsr</span><span class="o">.</span><span class="n">ListTree</span><span class="p">(</span><span class="n">lst</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;FMQ/&#39;</span><span class="p">]</span><span class="o">+</span><span class="n">list0</span><span class="o">+</span><span class="n">list1</span><span class="o">+</span><span class="n">list2</span><span class="p">)</span>
+<span class="g g-Whitespace">    </span><span class="mi">779</span> <span class="k">return</span> <span class="n">tree</span><span class="o">.</span><span class="n">list_tree</span><span class="p">(</span><span class="n">to_right</span><span class="o">=</span><span class="n">to_right</span><span class="p">)</span>
 
 <span class="ne">AttributeError</span>: module &#39;mtbp3.util.lsr&#39; has no attribute &#39;ListTree&#39;
 </pre></div>
diff --git a/example_files.html b/example_files.html
index 9adb7cb2..0a945288 100644
--- a/example_files.html
+++ b/example_files.html
@@ -153,7 +153,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_37/
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_57/
 ├── subfolder1/
 └── subfolder2/
     └── testfile3
@@ -170,7 +170,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_37/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_57/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
 ├── subfolder1/  &lt;&lt;&lt;((( Empty Folder )))&gt;&gt;&gt;
 └── subfolder2/  &lt;&lt;&lt;((( F=1; D=0 )))&gt;&gt;&gt;
     └── testfile3
@@ -193,7 +193,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 
                    modified                   created  file_type N_page  \
 0                      None                      None       None   None   
-1  Sun Jul 28 23:36:09 2024  Sun Jul 28 23:36:09 2024  testfile3   None   
+1  Sun Jul 28 23:39:19 2024  Sun Jul 28 23:39:19 2024  testfile3   None   
 
   N_column N_row  
 0     None  None  
diff --git a/genindex.html b/genindex.html
index b4f43ad2..e92e9540 100644
--- a/genindex.html
+++ b/genindex.html
@@ -165,7 +165,7 @@ <h2 id="_">_</h2>
 </li>
       <li><a href="autoapi/mtbp3/index.html#mtbp3.__version__">__version__ (in module mtbp3)</a>
 </li>
-      <li><a href="autoapi/mtbp3/index.html#id0">_ROOT (in module mtbp3)</a>, <a href="autoapi/mtbp3/index.html#mtbp3._ROOT">[1]</a>
+      <li><a href="autoapi/mtbp3/index.html#mtbp3._ROOT">_ROOT (in module mtbp3)</a>
 
       <ul>
         <li><a href="autoapi/mtbp3/util/index.html#mtbp3.util._ROOT">(in module mtbp3.util)</a>
@@ -521,7 +521,7 @@ <h2 id="G">G</h2>
 </li>
       <li><a href="autoapi/mtbp3/stdcdisc/lib/index.html#mtbp3.stdcdisc.lib.accessLib.get_ct_package">get_ct_package() (mtbp3.stdcdisc.lib.accessLib method)</a>
 </li>
-      <li><a href="autoapi/mtbp3/index.html#id3">get_data() (in module mtbp3)</a>, <a href="autoapi/mtbp3/index.html#mtbp3.get_data">[1]</a>
+      <li><a href="autoapi/mtbp3/index.html#mtbp3.get_data">get_data() (in module mtbp3)</a>
 
       <ul>
         <li><a href="autoapi/mtbp3/util/index.html#mtbp3.util.get_data">(in module mtbp3.util)</a>
diff --git a/objects.inv b/objects.inv
index 76770241..51644ee4 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/reports/example_emt3.err.log b/reports/example_emt3.err.log
index 7c99a29b..69f68006 100644
--- a/reports/example_emt3.err.log
+++ b/reports/example_emt3.err.log
@@ -24,11 +24,11 @@ print('\n'.join(emt.show_fmq_tree(fmq_list[:2])))
 Cell [0;32mIn[5], line 1[0m
 [0;32m----> 1[0m [38;5;28mprint[39m([38;5;124m'[39m[38;5;130;01m\n[39;00m[38;5;124m'[39m[38;5;241m.[39mjoin([43memt[49m[38;5;241;43m.[39;49m[43mshow_fmq_tree[49m[43m([49m[43mfmq_list[49m[43m[[49m[43m:[49m[38;5;241;43m2[39;49m[43m][49m[43m)[49m))
 
-File [0;32m~/work/mtbp3/mtbp3/mtbp3/health/emt.py:779[0m, in [0;36mEmt.show_fmq_tree[0;34m(self, fmq, with_soc, ignore_case, to_right)[0m
-[1;32m    777[0m list1 [38;5;241m=[39m pt_df[[38;5;124m'[39m[38;5;124mfmq_class[39m[38;5;124m'[39m][38;5;241m.[39munique()[38;5;241m.[39mtolist()
-[1;32m    778[0m list2 [38;5;241m=[39m pt_df[[38;5;124m'[39m[38;5;124mfmq_class_pt[39m[38;5;124m'[39m][38;5;241m.[39munique()[38;5;241m.[39mtolist()
-[0;32m--> 779[0m tree [38;5;241m=[39m [43mutil[49m[38;5;241;43m.[39;49m[43mlsr[49m[38;5;241;43m.[39;49m[43mListTree[49m(lst [38;5;241m=[39m [[38;5;124m'[39m[38;5;124mFMQ/[39m[38;5;124m'[39m][38;5;241m+[39mlist0[38;5;241m+[39mlist1[38;5;241m+[39mlist2)
-[1;32m    780[0m [38;5;28;01mreturn[39;00m tree[38;5;241m.[39mlist_tree(to_right[38;5;241m=[39mto_right)
+File [0;32m~/work/mtbp3/mtbp3/mtbp3/health/emt.py:778[0m, in [0;36mEmt.show_fmq_tree[0;34m(self, fmq, with_soc, ignore_case, to_right)[0m
+[1;32m    776[0m list1 [38;5;241m=[39m pt_df[[38;5;124m'[39m[38;5;124mfmq_class[39m[38;5;124m'[39m][38;5;241m.[39munique()[38;5;241m.[39mtolist()
+[1;32m    777[0m list2 [38;5;241m=[39m pt_df[[38;5;124m'[39m[38;5;124mfmq_class_pt[39m[38;5;124m'[39m][38;5;241m.[39munique()[38;5;241m.[39mtolist()
+[0;32m--> 778[0m tree [38;5;241m=[39m [43mutil[49m[38;5;241;43m.[39;49m[43mlsr[49m[38;5;241;43m.[39;49m[43mListTree[49m(lst [38;5;241m=[39m [[38;5;124m'[39m[38;5;124mFMQ/[39m[38;5;124m'[39m][38;5;241m+[39mlist0[38;5;241m+[39mlist1[38;5;241m+[39mlist2)
+[1;32m    779[0m [38;5;28;01mreturn[39;00m tree[38;5;241m.[39mlist_tree(to_right[38;5;241m=[39mto_right)
 
 [0;31mAttributeError[0m: module 'mtbp3.util.lsr' has no attribute 'ListTree'
 
diff --git a/searchindex.js b/searchindex.js
index 56562119..f00feb3c 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"API Reference": [[0, null]], "Access CDISC Library Resource": [[35, "access-cdisc-library-resource"]], "Algorithm - 1": [[32, "algorithm-1"]], "Appendix - View PTs Given Any FMQ": [[27, "appendix-view-pts-given-any-fmq"]], "Assign FMQ File Path": [[27, "assign-fmq-file-path"]], "Assign MedDRA Distribution Folder": [[25, "assign-meddra-distribution-folder"], [26, "assign-meddra-distribution-folder"]], "Attributes": [[2, "attributes"], [5, "attributes"], [12, "attributes"], [15, "attributes"], [17, "attributes"]], "Attribution": [[19, "attribution"]], "Background": [[31, "background"], [32, "background"], [33, "background"], [34, "background"]], "Bootstrap CI": [[33, "bootstrap-ci"]], "Bubble Plot": [[33, "bubble-plot"]], "CDISC Foundational Standards": [[35, "cdisc-foundational-standards"]], "Changelog": [[18, null]], "Classes": [[1, "classes"], [2, "classes"], [3, "classes"], [4, "classes"], [5, "classes"], [6, "classes"], [7, "classes"], [8, "classes"], [10, "classes"], [12, "classes"], [13, "classes"], [14, "classes"], [15, "classes"], [16, "classes"]], "Code of Conduct": [[19, null], [20, "code-of-conduct"]], "Cohen\u2019s Kappa Interpretation (Cohen, 1960)": [[33, "id22"]], "Cohen\u2019s Kappa Interpretation (McHugh, 2012)": [[33, "id23"]], "Cohen\u2019s \\kappa = -0.7241379310344827": [[33, "id29"]], "Cohen\u2019s \\kappa = -1": [[33, "id28"]], "Cohen\u2019s \\kappa = 0": [[33, "id24"], [33, "id25"]], "Cohen\u2019s \\kappa = 1": [[33, "id26"], [33, "id27"]], "Contributing": [[20, null], [30, "contributing"]], "Count of Ratings": [[34, "tbl-count1"]], "Counts for 2 categories": [[33, "id20"]], "Counts for 3 or more categories": [[33, "id21"]], "Credits": [[30, "credits"]], "EMA Implementation of IDMP": [[36, "ema-implementation-of-idmp"]], "EU Database - xEVMPD": [[36, "eu-database-xevmpd"]], "Enforcement": [[19, "enforcement"]], "Example - Group-1": [[31, "example-group-1"], [32, "example-group-1"], [33, "example-group-1"], [34, "example-group-1"]], "Example 1": [[22, "example-1"]], "Extensions": [[33, "extensions"]], "FMQ Tree": [[27, "fmq-tree"]], "Find MedDRA Terms Across Different Hierarchical Levels": [[25, "find-meddra-terms-across-different-hierarchical-levels"]], "Find MedDRA Terms Given a SMQ": [[26, "find-meddra-terms-given-a-smq"]], "Find MedDRA Terms Within a Given Hierarchical Level": [[25, "find-meddra-terms-within-a-given-hierarchical-level"]], "Find SMQ Terms": [[26, "find-smq-terms"]], "Find Sections Using Keywords": [[23, "find-sections-using-keywords"], [24, "find-sections-using-keywords"]], "Find Terms Given a FMQ": [[27, "find-terms-given-a-fmq"]], "Fix Bugs": [[20, "fix-bugs"]], "Fleiss\u2019s \\kappa = -0.0909090909090909": [[34, "id12"]], "Fleiss\u2019s \\kappa = 1.0": [[34, "id11"]], "Functions": [[5, "functions"], [13, "functions"], [15, "functions"], [17, "functions"]], "Get CT Packages": [[35, "get-ct-packages"]], "Get Started!": [[20, "get-started"]], "H/Clinical/Grouped Summary": [[22, null]], "H/ICH/MedDRA/(MLGs by CIOMS)": [[28, null]], "H/ICH/MedDRA/Basics": [[25, null]], "H/ICH/MedDRA/FMQs by FDA": [[27, null]], "H/ICH/MedDRA/SMQs by ICH": [[26, null]], "H/ICH/eCTD/US/3.2/Heading": [[23, null]], "H/ICH/eCTD/US/4.0/Heading": [[24, null]], "How to Cite": [[30, "how-to-cite"]], "How-to": [[31, "how-to"], [32, "how-to"], [32, "id5"], [33, "how-to"], [34, "how-to"]], "Implement Features": [[20, "implement-features"]], "Installation": [[30, "installation"]], "Interpretation of Cohen\u2019s Kappa Suggested in Literature": [[33, "interpretation-of-cohen-s-kappa-suggested-in-literature"]], "Kendall\u2019s \\tau = -1.0": [[32, "id3"]], "Kendall\u2019s \\tau = 1.0": [[32, "tbl-ex1"]], "Lab Exercise": [[32, "lab-exercise"], [33, "lab-exercise"], [34, "lab-exercise"], [34, "id8"]], "License": [[30, "license"]], "Module 1": [[23, "module-1"], [24, "module-1"]], "Module 2": [[23, "module-2"], [24, "module-2"]], "Module 3": [[23, "module-3"], [24, "module-3"]], "Module 4": [[23, "module-4"], [24, "module-4"]], "Module 5": [[23, "module-5"], [24, "module-5"]], "Module Contents": [[1, "module-contents"], [2, "module-contents"], [3, "module-contents"], [6, "module-contents"], [8, "module-contents"], [10, "module-contents"], [12, "module-contents"], [13, "module-contents"], [14, "module-contents"], [16, "module-contents"], [17, "module-contents"]], "More Details": [[31, "more-details"], [34, "more-details"]], "Notation": [[31, "notation"], [32, "notation"], [33, "notation"], [34, "notation"]], "Observed Value": [[31, "tbl-count1"], [32, "tbl-count1"]], "Other Options": [[25, "other-options"], [29, "other-options"]], "Our Pledge": [[19, "our-pledge"]], "Our Responsibilities": [[19, "our-responsibilities"]], "Our Standards": [[19, "our-standards"]], "Package Contents": [[4, "package-contents"], [5, "package-contents"], [7, "package-contents"], [15, "package-contents"]], "Pull Request Guidelines": [[20, "pull-request-guidelines"]], "Reference": [[23, "reference"], [24, "reference"], [25, "reference"], [26, "reference"], [27, "reference"], [28, "reference"], [31, "reference"], [32, "reference"], [33, "reference"], [34, "reference"], [35, "reference"], [36, "reference"], [37, "reference"]], "Report Bugs": [[20, "report-bugs"]], "Resources": [[35, "resources"]], "Save Demo FMQ List to Local": [[27, "save-demo-fmq-list-to-local"]], "Scope": [[19, "scope"]], "Select CDISC Version": [[35, "select-cdisc-version"]], "Spearman\u2019s \\rho = -1.0": [[31, "id3"]], "Spearman\u2019s \\rho = 1.0": [[31, "tbl-ex1"]], "StatLab/Corr/NP/Kendall\u2019s Tau": [[32, null]], "StatLab/Corr/NP/Spearman\u2019s Rho": [[31, null]], "StatLab/Reli/Cohen\u2019s Kappa": [[33, null]], "StatLab/Reli/Fleiss\u2019s Kappa": [[34, null]], "Std/CDISC/Library Resource": [[35, null]], "Std/ISO/IDMP": [[36, null]], "Std/ISO/PDF": [[37, null]], "Submit Feedback": [[20, "submit-feedback"]], "Submodules": [[4, "submodules"], [7, "submodules"], [9, "submodules"], [11, "submodules"], [15, "submodules"]], "Subpackages": [[5, "subpackages"]], "Table of Contents": [[30, "table-of-contents"]], "The Comprehensive Table of Contents Headings and Hierarchy (CTOC) by FDA": [[23, "the-comprehensive-table-of-contents-headings-and-hierarchy-ctoc-by-fda"], [24, "the-comprehensive-table-of-contents-headings-and-hierarchy-ctoc-by-fda"]], "Types of Contributions": [[20, "types-of-contributions"]], "U/Graph/Categorical Plots Using catPlotter": [[21, null]], "U/System/List Folder Contents": [[29, null]], "UNICOM project": [[36, "unicom-project"]], "Usage": [[30, "usage"]], "Weighted \\kappa": [[33, "weighted-kappa"]], "Write Documentation": [[20, "write-documentation"]], "mtbp3": [[5, null], [30, null]], "mtbp3.health": [[4, null]], "mtbp3.health.clinical": [[1, null]], "mtbp3.health.ectd": [[2, null]], "mtbp3.health.emt": [[3, null]], "mtbp3.statlab": [[7, null]], "mtbp3.statlab.corr": [[6, null]], "mtbp3.statlab.kappa": [[8, null]], "mtbp3.stdcdisc": [[9, null]], "mtbp3.stdcdisc.lib": [[10, null]], "mtbp3.stdiso": [[11, null]], "mtbp3.stdiso.pdfsummary": [[12, null]], "mtbp3.util": [[15, null]], "mtbp3.util.cdt": [[13, null]], "mtbp3.util.cdtg": [[14, null]], "mtbp3.util.lsr": [[16, null]], "mtbp3.util.util": [[17, null]], "v0.1.10 (2024-02-07)": [[18, "v0-1-10-2024-02-07"]], "v0.1.15 (2024-02-09)": [[18, "v0-1-15-2024-02-09"]], "v0.1.18 (2024-02-12)": [[18, "v0-1-18-2024-02-12"]], "v0.1.22 (2024-02-18)": [[18, "v0-1-22-2024-02-18"]], "v0.1.3 (2024-01-12)": [[18, "v0-1-3-2024-01-12"]], "v0.1.39 (2024-02-21)": [[18, "v0-1-39-2024-02-21"]], "v0.1.4 (2024-01-28)": [[18, "v0-1-4-2024-01-28"]], "v0.1.42 (2024-02-27)": [[18, "v0-1-42-2024-02-27"]], "v0.1.43 (2024-02-29)": [[18, "v0-1-43-2024-02-29"]], "v0.1.48 (2024-03-15)": [[18, "v0-1-48-2024-03-15"]], "v0.1.5 (2024-01-30)": [[18, "v0-1-5-2024-01-30"]], "v0.1.50 (2024-03-21)": [[18, "v0-1-50-2024-03-21"]], "v0.1.6 (2024-02-05)": [[18, "v0-1-6-2024-02-05"]], "v0.1.7 (2024-02-07)": [[18, "v0-1-7-2024-02-07"]], "v0.2.11 (2024-06-18)": [[18, "v0-2-11-2024-06-18"]], "v0.2.13 (2024-07-03)": [[18, "v0-2-13-2024-07-03"]], "v0.2.14 (2024-07-07)": [[18, "v0-2-14-2024-07-07"]], "v0.2.19 (2024-07-09)": [[18, "v0-2-19-2024-07-09"]], "v0.2.2 (2024-03-28)": [[18, "v0-2-2-2024-03-28"]], "v0.2.20 (2024-07-20)": [[18, "v0-2-20-2024-07-20"]], "v0.2.21 (2024-07-26)": [[18, "v0-2-21-2024-07-26"]], "v0.2.4 (2024-05-13)": [[18, "v0-2-4-2024-05-13"]], "v0.2.8 (2024-05-13)": [[18, "v0-2-8-2024-05-13"]], "v0.2.9 (2024-06-11)": [[18, "v0-2-9-2024-06-11"]]}, "docnames": ["autoapi/index", "autoapi/mtbp3/health/clinical/index", "autoapi/mtbp3/health/ectd/index", "autoapi/mtbp3/health/emt/index", "autoapi/mtbp3/health/index", "autoapi/mtbp3/index", "autoapi/mtbp3/statlab/corr/index", "autoapi/mtbp3/statlab/index", "autoapi/mtbp3/statlab/kappa/index", "autoapi/mtbp3/stdcdisc/index", "autoapi/mtbp3/stdcdisc/lib/index", "autoapi/mtbp3/stdiso/index", "autoapi/mtbp3/stdiso/pdfsummary/index", "autoapi/mtbp3/util/cdt/index", "autoapi/mtbp3/util/cdtg/index", "autoapi/mtbp3/util/index", "autoapi/mtbp3/util/lsr/index", "autoapi/mtbp3/util/util/index", "changelog", "conduct", "contributing", "example_cdtg", "example_clinical", "example_ectd", "example_ectd2", "example_emt", "example_emt2", "example_emt3", "example_emt4", "example_files", "index", "statlab_corr_spearman_rho", "statlab_corr_tau", "statlab_kappa", "statlab_kappa2", "std_cdisc", "std_iso_idmp", "std_iso_pdf"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1}, "filenames": ["autoapi/index.rst", "autoapi/mtbp3/health/clinical/index.rst", "autoapi/mtbp3/health/ectd/index.rst", "autoapi/mtbp3/health/emt/index.rst", "autoapi/mtbp3/health/index.rst", "autoapi/mtbp3/index.rst", "autoapi/mtbp3/statlab/corr/index.rst", "autoapi/mtbp3/statlab/index.rst", "autoapi/mtbp3/statlab/kappa/index.rst", "autoapi/mtbp3/stdcdisc/index.rst", "autoapi/mtbp3/stdcdisc/lib/index.rst", "autoapi/mtbp3/stdiso/index.rst", "autoapi/mtbp3/stdiso/pdfsummary/index.rst", "autoapi/mtbp3/util/cdt/index.rst", "autoapi/mtbp3/util/cdtg/index.rst", "autoapi/mtbp3/util/index.rst", "autoapi/mtbp3/util/lsr/index.rst", "autoapi/mtbp3/util/util/index.rst", "changelog.md", "conduct.md", "contributing.md", "example_cdtg.ipynb", "example_clinical.ipynb", "example_ectd.ipynb", "example_ectd2.ipynb", "example_emt.ipynb", "example_emt2.ipynb", "example_emt3.ipynb", "example_emt4.ipynb", "example_files.ipynb", "index.md", "statlab_corr_spearman_rho.rst", "statlab_corr_tau.rst", "statlab_kappa.rst", "statlab_kappa2.rst", "std_cdisc.ipynb", "std_iso_idmp.ipynb", "std_iso_pdf.ipynb"], "indexentries": {"__calculate_cohen_kappa() (mtbp3.statlab.kappa.kappacalculator static method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.__calculate_cohen_kappa", false]], "__calculate_cohen_kappa() (mtbp3.statlab.kappacalculator static method)": [[7, "mtbp3.statlab.KappaCalculator.__calculate_cohen_kappa", false]], "__calculate_fleiss_kappa() (mtbp3.statlab.kappa.kappacalculator static method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.__calculate_fleiss_kappa", false]], "__calculate_fleiss_kappa() (mtbp3.statlab.kappacalculator static method)": [[7, "mtbp3.statlab.KappaCalculator.__calculate_fleiss_kappa", false]], "__convert_2dlist_to_string() (mtbp3.statlab.kappa.kappacalculator static method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.__convert_2dlist_to_string", false]], "__convert_2dlist_to_string() (mtbp3.statlab.kappacalculator static method)": [[7, "mtbp3.statlab.KappaCalculator.__convert_2dlist_to_string", false]], "__g() (mtbp3.statlab.corr.corrcalculator static method)": [[6, "mtbp3.statlab.corr.CorrCalculator.__g", false]], "__init__() (mtbp3.health.clinical.summary_by_group method)": [[1, "mtbp3.health.clinical.summary_by_group.__init__", false]], "__list_tree_df() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.__list_tree_df", false]], "__list_tree_df() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.__list_tree_df", false]], "__list_tree_df() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.__list_tree_df", false]], "__list_tree_pre() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.__list_tree_pre", false]], "__list_tree_pre() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.__list_tree_pre", false]], "__list_tree_pre() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.__list_tree_pre", false]], "__load_list() (mtbp3.health.ectd.ctoc_by_fda method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.__load_list", false]], "__version__ (in module mtbp3)": [[5, "mtbp3.__version__", false]], "_root (in module mtbp3)": [[5, "id0", false], [5, "mtbp3._ROOT", false]], "_root (in module mtbp3.util)": [[15, "mtbp3.util._ROOT", false]], "_root (in module mtbp3.util.util)": [[17, "mtbp3.util.util._ROOT", false]], "accesslib (class in mtbp3.stdcdisc.lib)": [[10, "mtbp3.stdcdisc.lib.accessLib", false]], "all_str_digit() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.all_str_digit", false]], "all_str_digit() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.all_str_digit", false]], "assert_terms() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.assert_terms", false]], "assert_terms() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.assert_terms", false]], "baseurl (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.baseURL", false]], "bootstrap_cohen_ci() (mtbp3.statlab.kappa.kappacalculator method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.bootstrap_cohen_ci", false]], "bootstrap_cohen_ci() (mtbp3.statlab.kappacalculator method)": [[7, "mtbp3.statlab.KappaCalculator.bootstrap_cohen_ci", false]], "boxplot() (mtbp3.catplotter method)": [[5, "mtbp3.catPlotter.boxplot", false]], "boxplot() (mtbp3.util.catplotter method)": [[15, "mtbp3.util.catPlotter.boxplot", false]], "boxplot() (mtbp3.util.cdtg.catplotter method)": [[14, "mtbp3.util.cdtg.catPlotter.boxplot", false]], "calculate_kendall_tau() (mtbp3.statlab.corr.corrcalculator method)": [[6, "mtbp3.statlab.corr.CorrCalculator.calculate_kendall_tau", false]], "catplotter (class in mtbp3)": [[5, "mtbp3.catPlotter", false]], "catplotter (class in mtbp3.util)": [[15, "mtbp3.util.catPlotter", false]], "catplotter (class in mtbp3.util.cdtg)": [[14, "mtbp3.util.cdtg.catPlotter", false]], "color_output() (mtbp3.health.ectd.ctoc_by_fda static method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.color_output", false]], "corrcalculator (class in mtbp3.statlab.corr)": [[6, "mtbp3.statlab.corr.CorrCalculator", false]], "count_by_group() (mtbp3.health.clinical.summary_by_group method)": [[1, "id2", false], [1, "mtbp3.health.clinical.summary_by_group.count_by_group", false]], "count_str (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.count_str", false]], "count_str (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.count_str", false]], "count_str (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.count_str", false]], "count_to_cate() (mtbp3.health.clinical.summary_by_group method)": [[1, "id3", false], [1, "mtbp3.health.clinical.summary_by_group.count_to_cate", false]], "create_bubble_plot() (mtbp3.statlab.kappa.kappacalculator method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.create_bubble_plot", false]], "create_bubble_plot() (mtbp3.statlab.kappacalculator method)": [[7, "mtbp3.statlab.KappaCalculator.create_bubble_plot", false]], "ct_list (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.ct_list", false]], "ct_list_titles (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.ct_list_titles", false]], "ct_package (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.ct_package", false]], "ctoc (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.ctoc", false]], "ctoc_by_fda (class in mtbp3.health.ectd)": [[2, "mtbp3.health.ectd.ctoc_by_fda", false]], "ctoc_version (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.ctoc_version", false]], "demo (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.demo", false]], "df (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.df", false]], "df (mtbp3.health.clinical.summary_by_group attribute)": [[1, "id0", false], [1, "mtbp3.health.clinical.summary_by_group.df", false]], "df (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.df", false]], "df (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.df", false]], "df (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.df", false]], "df (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.df", false]], "df (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.df", false]], "diff_2cols_in_1df() (in module mtbp3)": [[5, "mtbp3.diff_2cols_in_1df", false]], "diff_2cols_in_1df() (in module mtbp3.util)": [[15, "mtbp3.util.diff_2cols_in_1df", false]], "diff_2cols_in_1df() (in module mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.diff_2cols_in_1df", false]], "diff_2cols_in_2df() (in module mtbp3)": [[5, "mtbp3.diff_2cols_in_2df", false]], "diff_2cols_in_2df() (in module mtbp3.util)": [[15, "mtbp3.util.diff_2cols_in_2df", false]], "diff_2cols_in_2df() (in module mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.diff_2cols_in_2df", false]], "ectd_version (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.ectd_version", false]], "emt (class in mtbp3.health)": [[4, "mtbp3.health.Emt", false]], "emt (class in mtbp3.health.emt)": [[3, "mtbp3.health.emt.Emt", false]], "expected_file_lists() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.expected_file_lists", false]], "expected_file_lists() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.expected_file_lists", false]], "fig_size_0 (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.fig_size_0", false]], "fig_size_0 (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.fig_size_0", false]], "fig_size_0 (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.fig_size_0", false]], "fig_size_1 (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.fig_size_1", false]], "fig_size_1 (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.fig_size_1", false]], "fig_size_1 (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.fig_size_1", false]], "files (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.files", false]], "files (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.files", false]], "find_files() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_files", false]], "find_files() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_files", false]], "find_fmq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_fmq", false]], "find_fmq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_fmq", false]], "find_fmq_file() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_fmq_file", false]], "find_fmq_file() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_fmq_file", false]], "find_hlgt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_hlgt", false]], "find_hlgt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_hlgt", false]], "find_hlt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_hlt", false]], "find_hlt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_hlt", false]], "find_llt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_llt", false]], "find_llt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_llt", false]], "find_llt_given_pt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_llt_given_pt", false]], "find_llt_given_pt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_llt_given_pt", false]], "find_llt_given_soc() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_llt_given_soc", false]], "find_llt_given_soc() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_llt_given_soc", false]], "find_pt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_pt", false]], "find_pt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_pt", false]], "find_pt_given_soc() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_pt_given_soc", false]], "find_pt_given_soc() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_pt_given_soc", false]], "find_section_given_words() (mtbp3.health.ectd.ctoc_by_fda method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.find_section_given_words", false]], "find_smq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_smq", false]], "find_smq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_smq", false]], "find_soc() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_soc", false]], "find_soc() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_soc", false]], "find_soc_given_pt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_soc_given_pt", false]], "find_soc_given_pt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_soc_given_pt", false]], "find_term_wi_level() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_term_wi_level", false]], "find_term_wi_level() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_term_wi_level", false]], "find_terms_given_fmq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_terms_given_fmq", false]], "find_terms_given_fmq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_terms_given_fmq", false]], "find_terms_given_smq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_terms_given_smq", false]], "find_terms_given_smq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_terms_given_smq", false]], "find_terms_given_smq_sub() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_terms_given_smq_sub", false]], "find_terms_given_smq_sub() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_terms_given_smq_sub", false]], "fmq_list (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.fmq_list", false]], "fmq_list (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.fmq_list", false]], "fmq_list_default (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.fmq_list_default", false]], "fmq_list_default (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.fmq_list_default", false]], "fmq_list_unique (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.fmq_list_unique", false]], "fmq_list_unique (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.fmq_list_unique", false]], "folder_name (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.folder_name", false]], "folder_name (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.folder_name", false]], "folder_name (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.folder_name", false]], "generate_dataset() (mtbp3.health.clinical.summary_by_group method)": [[1, "mtbp3.health.clinical.summary_by_group.generate_dataset", false]], "generate_dataset() (mtbp3.health.clinical.summary_by_group static method)": [[1, "id1", false]], "generate_example_dataset() (mtbp3.catplotter static method)": [[5, "mtbp3.catPlotter.generate_example_dataset", false]], "generate_example_dataset() (mtbp3.util.catplotter static method)": [[15, "mtbp3.util.catPlotter.generate_example_dataset", false]], "generate_example_dataset() (mtbp3.util.cdtg.catplotter static method)": [[14, "mtbp3.util.cdtg.catPlotter.generate_example_dataset", false]], "get_ct_codelists_df() (mtbp3.stdcdisc.lib.accesslib method)": [[10, "mtbp3.stdcdisc.lib.accessLib.get_ct_codelists_df", false]], "get_ct_list() (mtbp3.stdcdisc.lib.accesslib method)": [[10, "mtbp3.stdcdisc.lib.accessLib.get_ct_list", false]], "get_ct_package() (mtbp3.stdcdisc.lib.accesslib method)": [[10, "mtbp3.stdcdisc.lib.accessLib.get_ct_package", false]], "get_data() (in module mtbp3)": [[5, "id3", false], [5, "mtbp3.get_data", false]], "get_data() (in module mtbp3.util)": [[15, "mtbp3.util.get_data", false]], "get_data() (in module mtbp3.util.util)": [[17, "mtbp3.util.util.get_data", false]], "get_outline_list() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id5", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.get_outline_list", false]], "get_summary_df() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id4", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.get_summary_df", false]], "get_summary_string() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id3", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.get_summary_string", false]], "grid_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.grid_col", false]], "grid_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.grid_col", false]], "grid_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.grid_col", false]], "grid_kws (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.grid_kws", false]], "grid_kws (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.grid_kws", false]], "grid_kws (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.grid_kws", false]], "grid_wrap (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.grid_wrap", false]], "grid_wrap (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.grid_wrap", false]], "grid_wrap (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.grid_wrap", false]], "group_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.group_col", false]], "group_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.group_col", false]], "group_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.group_col", false]], "infmt (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.infmt", false]], "infmt (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.infmt", false]], "infmt (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.infmt", false]], "input_file (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "id0", false], [10, "mtbp3.stdcdisc.lib.accessLib.input_file", false]], "kappacalculator (class in mtbp3.statlab)": [[7, "mtbp3.statlab.KappaCalculator", false]], "kappacalculator (class in mtbp3.statlab.kappa)": [[8, "mtbp3.statlab.kappa.KappaCalculator", false]], "label (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.label", false]], "label (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.label", false]], "label (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.label", false]], "language (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.language", false]], "language (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.language", false]], "lineplot() (mtbp3.catplotter method)": [[5, "mtbp3.catPlotter.lineplot", false]], "lineplot() (mtbp3.util.catplotter method)": [[15, "mtbp3.util.catPlotter.lineplot", false]], "lineplot() (mtbp3.util.cdtg.catplotter method)": [[14, "mtbp3.util.cdtg.catPlotter.lineplot", false]], "list_files() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.list_files", false]], "list_files() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.list_files", false]], "list_files() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files", false]], "list_files() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files", false]], "list_files() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files", false]], "list_files_dataframe() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_dataframe", false]], "list_files_dataframe() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_dataframe", false]], "list_files_dataframe() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_dataframe", false]], "list_files_json() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_json", false]], "list_files_json() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_json", false]], "list_files_json() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_json", false]], "list_files_list() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_list", false]], "list_files_list() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_list", false]], "list_files_list() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_list", false]], "list_files_string() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_string", false]], "list_files_string() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_string", false]], "list_files_string() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_string", false]], "list_files_tree() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_tree", false]], "list_files_tree() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_tree", false]], "list_files_tree() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_tree", false]], "list_tree() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.list_tree", false]], "list_tree() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.list_tree", false]], "list_tree() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.list_tree", false]], "list_tree_with_keyword() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.list_tree_with_keyword", false]], "list_tree_with_keyword() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.list_tree_with_keyword", false]], "list_tree_with_keyword() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.list_tree_with_keyword", false]], "listtree (class in mtbp3)": [[5, "mtbp3.ListTree", false]], "listtree (class in mtbp3.util)": [[15, "mtbp3.util.ListTree", false]], "listtree (class in mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.ListTree", false]], "llt (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.llt", false]], "llt (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.llt", false]], "load_fmq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_fmq", false]], "load_fmq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_fmq", false]], "load_fmq_default() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_fmq_default", false]], "load_fmq_default() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_fmq_default", false]], "load_llt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_llt", false]], "load_llt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_llt", false]], "load_smq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_smq", false]], "load_smq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_smq", false]], "lsrt (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.lsrt", false]], "lsrt (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.lsrt", false]], "lsrtree (class in mtbp3)": [[5, "mtbp3.LsrTree", false]], "lsrtree (class in mtbp3.util)": [[15, "mtbp3.util.LsrTree", false]], "lsrtree (class in mtbp3.util.lsr)": [[16, "mtbp3.util.lsr.LsrTree", false]], "lst (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.lst", false]], "lst (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.lst", false]], "lst (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.lst", false]], "mdhier (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.mdhier", false]], "mdhier (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.mdhier", false]], "meddra_release_file (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.meddra_release_file", false]], "meddra_release_file (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.meddra_release_file", false]], "module": [[1, "module-mtbp3.health.clinical", false], [2, "module-mtbp3.health.ectd", false], [3, "module-mtbp3.health.emt", false], [4, "module-mtbp3.health", false], [5, "module-mtbp3", false], [6, "module-mtbp3.statlab.corr", false], [7, "module-mtbp3.statlab", false], [8, "module-mtbp3.statlab.kappa", false], [9, "module-mtbp3.stdcdisc", false], [10, "module-mtbp3.stdcdisc.lib", false], [11, "module-mtbp3.stdiso", false], [12, "module-mtbp3.stdiso.pdfsummary", false], [13, "module-mtbp3.util.cdt", false], [14, "module-mtbp3.util.cdtg", false], [15, "module-mtbp3.util", false], [16, "module-mtbp3.util.lsr", false], [17, "module-mtbp3.util.util", false]], "month (mtbp3.health.emt attribute)": [[4, "id1", false], [4, "mtbp3.health.Emt.month", false]], "month (mtbp3.health.emt.emt attribute)": [[3, "id1", false], [3, "mtbp3.health.emt.Emt.month", false]], "mtbp3": [[5, "module-mtbp3", false]], "mtbp3.health": [[4, "module-mtbp3.health", false]], "mtbp3.health.clinical": [[1, "module-mtbp3.health.clinical", false]], "mtbp3.health.ectd": [[2, "module-mtbp3.health.ectd", false]], "mtbp3.health.emt": [[3, "module-mtbp3.health.emt", false]], "mtbp3.statlab": [[7, "module-mtbp3.statlab", false]], "mtbp3.statlab.corr": [[6, "module-mtbp3.statlab.corr", false]], "mtbp3.statlab.kappa": [[8, "module-mtbp3.statlab.kappa", false]], "mtbp3.stdcdisc": [[9, "module-mtbp3.stdcdisc", false]], "mtbp3.stdcdisc.lib": [[10, "module-mtbp3.stdcdisc.lib", false]], "mtbp3.stdiso": [[11, "module-mtbp3.stdiso", false]], "mtbp3.stdiso.pdfsummary": [[12, "module-mtbp3.stdiso.pdfsummary", false]], "mtbp3.util": [[15, "module-mtbp3.util", false]], "mtbp3.util.cdt": [[13, "module-mtbp3.util.cdt", false]], "mtbp3.util.cdtg": [[14, "module-mtbp3.util.cdtg", false]], "mtbp3.util.lsr": [[16, "module-mtbp3.util.lsr", false]], "mtbp3.util.util": [[17, "module-mtbp3.util.util", false]], "outfmt (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.outfmt", false]], "outfmt (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.outfmt", false]], "outfmt (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.outfmt", false]], "outline_list (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "id2", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.outline_list", false]], "path (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.path", false]], "path (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.path", false]], "path (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.path", false]], "pattern (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.pattern", false]], "pattern (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.pattern", false]], "pdf_path (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.pdf_path", false]], "pdfsummary (class in mtbp3.stdiso.pdfsummary)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary", false]], "pfr (in module mtbp3.stdiso.pdfsummary)": [[12, "mtbp3.stdiso.pdfsummary.pfr", false]], "plot_y_list() (mtbp3.statlab.corr.corrcalculator method)": [[6, "mtbp3.statlab.corr.CorrCalculator.plot_y_list", false]], "point_position (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.point_position", false]], "point_position (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.point_position", false]], "point_position (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.point_position", false]], "pp (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.pp", false]], "prelst (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.prelst", false]], "prelst (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.prelst", false]], "prelst (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.prelst", false]], "pt_size (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.pt_size", false]], "pt_size (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.pt_size", false]], "pt_size (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.pt_size", false]], "readme_file (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.readme_file", false]], "readme_file (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.readme_file", false]], "save_fmq_consolidated_list_csv() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.save_fmq_consolidated_list_csv", false]], "save_fmq_consolidated_list_csv() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.save_fmq_consolidated_list_csv", false]], "show_ctoc_tree() (mtbp3.health.ectd.ctoc_by_fda method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.show_ctoc_tree", false]], "show_fmq_tree() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.show_fmq_tree", false]], "show_fmq_tree() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.show_fmq_tree", false]], "show_outline_tree() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id6", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.show_outline_tree", false]], "smq_content (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.smq_content", false]], "smq_content (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.smq_content", false]], "smq_list (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.smq_list", false]], "smq_list (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.smq_list", false]], "summarize_1nc_by_2group() (in module mtbp3)": [[5, "mtbp3.summarize_1nc_by_2group", false]], "summarize_1nc_by_2group() (in module mtbp3.util)": [[15, "mtbp3.util.summarize_1nc_by_2group", false]], "summarize_1nc_by_2group() (in module mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.summarize_1nc_by_2group", false]], "summary (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "id0", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.summary", false]], "summary_by_group (class in mtbp3.health.clinical)": [[1, "mtbp3.health.clinical.summary_by_group", false]], "summary_label (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "id1", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.summary_label", false]], "title (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.title", false]], "title (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.title", false]], "title (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.title", false]], "tmp0 (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.tmp0", false]], "tmp1 (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.tmp1", false]], "tree (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.tree", false]], "tree (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.tree", false]], "tree (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.tree", false]], "update_parameters() (mtbp3.catplotter method)": [[5, "mtbp3.catPlotter.update_parameters", false]], "update_parameters() (mtbp3.util.catplotter method)": [[15, "mtbp3.util.catPlotter.update_parameters", false]], "update_parameters() (mtbp3.util.cdtg.catplotter method)": [[14, "mtbp3.util.cdtg.catPlotter.update_parameters", false]], "version_number (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.version_number", false]], "version_number (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.version_number", false]], "version_number_us (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.version_number_us", false]], "version_number_us (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.version_number_us", false]], "with_counts (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.with_counts", false]], "with_counts (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.with_counts", false]], "with_counts (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.with_counts", false]], "words (in module mtbp3.health.ectd)": [[2, "mtbp3.health.ectd.words", false]], "x_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.x_col", false]], "x_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.x_col", false]], "x_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.x_col", false]], "x_label_rotate (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.x_label_rotate", false]], "x_label_rotate (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.x_label_rotate", false]], "x_label_rotate (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.x_label_rotate", false]], "x_scale_base (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.x_scale_base", false]], "x_scale_base (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.x_scale_base", false]], "x_scale_base (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.x_scale_base", false]], "y_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.y_col", false]], "y_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.y_col", false]], "y_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.y_col", false]], "y_scale_base (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.y_scale_base", false]], "y_scale_base (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.y_scale_base", false]], "y_scale_base (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.y_scale_base", false]], "year (mtbp3.health.emt attribute)": [[4, "id0", false], [4, "mtbp3.health.Emt.year", false]], "year (mtbp3.health.emt.emt attribute)": [[3, "id0", false], [3, "mtbp3.health.emt.Emt.year", false]]}, "objects": {"": [[5, 0, 0, "-", "mtbp3"]], "mtbp3": [[5, 1, 1, "", "ListTree"], [5, 1, 1, "", "LsrTree"], [5, 4, 1, "id0", "_ROOT"], [5, 4, 1, "", "__version__"], [5, 1, 1, "", "catPlotter"], [5, 5, 1, "", "diff_2cols_in_1df"], [5, 5, 1, "", "diff_2cols_in_2df"], [5, 5, 1, "id3", "get_data"], [4, 0, 0, "-", "health"], [7, 0, 0, "-", "statlab"], [9, 0, 0, "-", "stdcdisc"], [11, 0, 0, "-", "stdiso"], [5, 5, 1, "", "summarize_1nc_by_2group"], [15, 0, 0, "-", "util"]], "mtbp3.ListTree": [[5, 2, 1, "", "__list_tree_df"], [5, 2, 1, "", "__list_tree_pre"], [5, 3, 1, "", "df"], [5, 3, 1, "", "infmt"], [5, 3, 1, "", "label"], [5, 2, 1, "", "list_tree"], [5, 2, 1, "", "list_tree_with_keyword"], [5, 3, 1, "", "lst"], [5, 3, 1, "", "prelst"], [5, 3, 1, "", "tree"]], "mtbp3.LsrTree": [[5, 3, 1, "", "count_str"], [5, 2, 1, "", "list_files"], [5, 2, 1, "", "list_files_dataframe"], [5, 2, 1, "", "list_files_json"], [5, 2, 1, "", "list_files_list"], [5, 2, 1, "", "list_files_string"], [5, 2, 1, "", "list_files_tree"], [5, 3, 1, "", "outfmt"], [5, 3, 1, "", "path"], [5, 3, 1, "", "with_counts"]], "mtbp3.catPlotter": [[5, 2, 1, "", "boxplot"], [5, 3, 1, "", "df"], [5, 3, 1, "", "fig_size_0"], [5, 3, 1, "", "fig_size_1"], [5, 2, 1, "", "generate_example_dataset"], [5, 3, 1, "", "grid_col"], [5, 3, 1, "", "grid_kws"], [5, 3, 1, "", "grid_wrap"], [5, 3, 1, "", "group_col"], [5, 2, 1, "", "lineplot"], [5, 3, 1, "", "point_position"], [5, 3, 1, "", "pt_size"], [5, 3, 1, "", "title"], [5, 2, 1, "", "update_parameters"], [5, 3, 1, "", "x_col"], [5, 3, 1, "", "x_label_rotate"], [5, 3, 1, "", "x_scale_base"], [5, 3, 1, "", "y_col"], [5, 3, 1, "", "y_scale_base"]], "mtbp3.health": [[4, 1, 1, "", "Emt"], [1, 0, 0, "-", "clinical"], [2, 0, 0, "-", "ectd"], [3, 0, 0, "-", "emt"]], "mtbp3.health.Emt": [[4, 2, 1, "", "all_str_digit"], [4, 2, 1, "", "assert_terms"], [4, 2, 1, "", "expected_file_lists"], [4, 3, 1, "", "files"], [4, 2, 1, "", "find_files"], [4, 2, 1, "", "find_fmq"], [4, 2, 1, "", "find_fmq_file"], [4, 2, 1, "", "find_hlgt"], [4, 2, 1, "", "find_hlt"], [4, 2, 1, "", "find_llt"], [4, 2, 1, "", "find_llt_given_pt"], [4, 2, 1, "", "find_llt_given_soc"], [4, 2, 1, "", "find_pt"], [4, 2, 1, "", "find_pt_given_soc"], [4, 2, 1, "", "find_smq"], [4, 2, 1, "", "find_soc"], [4, 2, 1, "", "find_soc_given_pt"], [4, 2, 1, "", "find_term_wi_level"], [4, 2, 1, "", "find_terms_given_fmq"], [4, 2, 1, "", "find_terms_given_smq"], [4, 2, 1, "", "find_terms_given_smq_sub"], [4, 3, 1, "", "fmq_list"], [4, 3, 1, "", "fmq_list_default"], [4, 3, 1, "", "fmq_list_unique"], [4, 3, 1, "", "folder_name"], [4, 3, 1, "", "language"], [4, 2, 1, "", "list_files"], [4, 3, 1, "", "llt"], [4, 2, 1, "", "load_fmq"], [4, 2, 1, "", "load_fmq_default"], [4, 2, 1, "", "load_llt"], [4, 2, 1, "", "load_smq"], [4, 3, 1, "", "lsrt"], [4, 3, 1, "", "mdhier"], [4, 3, 1, "", "meddra_release_file"], [4, 3, 1, "id1", "month"], [4, 3, 1, "", "pattern"], [4, 3, 1, "", "readme_file"], [4, 2, 1, "", "save_fmq_consolidated_list_csv"], [4, 2, 1, "", "show_fmq_tree"], [4, 3, 1, "", "smq_content"], [4, 3, 1, "", "smq_list"], [4, 3, 1, "", "version_number"], [4, 3, 1, "", "version_number_us"], [4, 3, 1, "id0", "year"]], "mtbp3.health.clinical": [[1, 1, 1, "", "summary_by_group"]], "mtbp3.health.clinical.summary_by_group": [[1, 2, 1, "", "__init__"], [1, 2, 1, "id2", "count_by_group"], [1, 2, 1, "id3", "count_to_cate"], [1, 3, 1, "id0", "df"], [1, 2, 1, "id1", "generate_dataset"]], "mtbp3.health.ectd": [[2, 1, 1, "", "ctoc_by_fda"], [2, 4, 1, "", "words"]], "mtbp3.health.ectd.ctoc_by_fda": [[2, 2, 1, "", "__load_list"], [2, 2, 1, "", "color_output"], [2, 3, 1, "", "ctoc"], [2, 3, 1, "", "ctoc_version"], [2, 3, 1, "", "ectd_version"], [2, 2, 1, "", "find_section_given_words"], [2, 3, 1, "", "folder_name"], [2, 2, 1, "", "show_ctoc_tree"]], "mtbp3.health.emt": [[3, 1, 1, "", "Emt"]], "mtbp3.health.emt.Emt": [[3, 2, 1, "", "all_str_digit"], [3, 2, 1, "", "assert_terms"], [3, 2, 1, "", "expected_file_lists"], [3, 3, 1, "", "files"], [3, 2, 1, "", "find_files"], [3, 2, 1, "", "find_fmq"], [3, 2, 1, "", "find_fmq_file"], [3, 2, 1, "", "find_hlgt"], [3, 2, 1, "", "find_hlt"], [3, 2, 1, "", "find_llt"], [3, 2, 1, "", "find_llt_given_pt"], [3, 2, 1, "", "find_llt_given_soc"], [3, 2, 1, "", "find_pt"], [3, 2, 1, "", "find_pt_given_soc"], [3, 2, 1, "", "find_smq"], [3, 2, 1, "", "find_soc"], [3, 2, 1, "", "find_soc_given_pt"], [3, 2, 1, "", "find_term_wi_level"], [3, 2, 1, "", "find_terms_given_fmq"], [3, 2, 1, "", "find_terms_given_smq"], [3, 2, 1, "", "find_terms_given_smq_sub"], [3, 3, 1, "", "fmq_list"], [3, 3, 1, "", "fmq_list_default"], [3, 3, 1, "", "fmq_list_unique"], [3, 3, 1, "", "folder_name"], [3, 3, 1, "", "language"], [3, 2, 1, "", "list_files"], [3, 3, 1, "", "llt"], [3, 2, 1, "", "load_fmq"], [3, 2, 1, "", "load_fmq_default"], [3, 2, 1, "", "load_llt"], [3, 2, 1, "", "load_smq"], [3, 3, 1, "", "lsrt"], [3, 3, 1, "", "mdhier"], [3, 3, 1, "", "meddra_release_file"], [3, 3, 1, "id1", "month"], [3, 3, 1, "", "pattern"], [3, 3, 1, "", "readme_file"], [3, 2, 1, "", "save_fmq_consolidated_list_csv"], [3, 2, 1, "", "show_fmq_tree"], [3, 3, 1, "", "smq_content"], [3, 3, 1, "", "smq_list"], [3, 3, 1, "", "version_number"], [3, 3, 1, "", "version_number_us"], [3, 3, 1, "id0", "year"]], "mtbp3.statlab": [[7, 1, 1, "", "KappaCalculator"], [6, 0, 0, "-", "corr"], [8, 0, 0, "-", "kappa"]], "mtbp3.statlab.KappaCalculator": [[7, 2, 1, "", "__calculate_cohen_kappa"], [7, 2, 1, "", "__calculate_fleiss_kappa"], [7, 2, 1, "", "__convert_2dlist_to_string"], [7, 2, 1, "", "bootstrap_cohen_ci"], [7, 2, 1, "", "create_bubble_plot"]], "mtbp3.statlab.corr": [[6, 1, 1, "", "CorrCalculator"]], "mtbp3.statlab.corr.CorrCalculator": [[6, 2, 1, "", "__g"], [6, 2, 1, "", "calculate_kendall_tau"], [6, 2, 1, "", "plot_y_list"]], "mtbp3.statlab.kappa": [[8, 1, 1, "", "KappaCalculator"]], "mtbp3.statlab.kappa.KappaCalculator": [[8, 2, 1, "", "__calculate_cohen_kappa"], [8, 2, 1, "", "__calculate_fleiss_kappa"], [8, 2, 1, "", "__convert_2dlist_to_string"], [8, 2, 1, "", "bootstrap_cohen_ci"], [8, 2, 1, "", "create_bubble_plot"]], "mtbp3.stdcdisc": [[10, 0, 0, "-", "lib"]], "mtbp3.stdcdisc.lib": [[10, 1, 1, "", "accessLib"]], "mtbp3.stdcdisc.lib.accessLib": [[10, 3, 1, "", "baseURL"], [10, 3, 1, "", "ct_list"], [10, 3, 1, "", "ct_list_titles"], [10, 3, 1, "", "ct_package"], [10, 2, 1, "", "get_ct_codelists_df"], [10, 2, 1, "", "get_ct_list"], [10, 2, 1, "", "get_ct_package"], [10, 3, 1, "id0", "input_file"]], "mtbp3.stdiso": [[12, 0, 0, "-", "pdfsummary"]], "mtbp3.stdiso.pdfsummary": [[12, 1, 1, "", "pdfSummary"], [12, 4, 1, "", "pfr"]], "mtbp3.stdiso.pdfsummary.pdfSummary": [[12, 3, 1, "", "demo"], [12, 2, 1, "id5", "get_outline_list"], [12, 2, 1, "id4", "get_summary_df"], [12, 2, 1, "id3", "get_summary_string"], [12, 3, 1, "id2", "outline_list"], [12, 3, 1, "", "pdf_path"], [12, 3, 1, "", "pp"], [12, 2, 1, "id6", "show_outline_tree"], [12, 3, 1, "id0", "summary"], [12, 3, 1, "id1", "summary_label"], [12, 3, 1, "", "tmp0"], [12, 3, 1, "", "tmp1"]], "mtbp3.util": [[15, 1, 1, "", "ListTree"], [15, 1, 1, "", "LsrTree"], [15, 4, 1, "", "_ROOT"], [15, 1, 1, "", "catPlotter"], [13, 0, 0, "-", "cdt"], [14, 0, 0, "-", "cdtg"], [15, 5, 1, "", "diff_2cols_in_1df"], [15, 5, 1, "", "diff_2cols_in_2df"], [15, 5, 1, "", "get_data"], [16, 0, 0, "-", "lsr"], [15, 5, 1, "", "summarize_1nc_by_2group"], [17, 0, 0, "-", "util"]], "mtbp3.util.ListTree": [[15, 2, 1, "", "__list_tree_df"], [15, 2, 1, "", "__list_tree_pre"], [15, 3, 1, "", "df"], [15, 3, 1, "", "infmt"], [15, 3, 1, "", "label"], [15, 2, 1, "", "list_tree"], [15, 2, 1, "", "list_tree_with_keyword"], [15, 3, 1, "", "lst"], [15, 3, 1, "", "prelst"], [15, 3, 1, "", "tree"]], "mtbp3.util.LsrTree": [[15, 3, 1, "", "count_str"], [15, 2, 1, "", "list_files"], [15, 2, 1, "", "list_files_dataframe"], [15, 2, 1, "", "list_files_json"], [15, 2, 1, "", "list_files_list"], [15, 2, 1, "", "list_files_string"], [15, 2, 1, "", "list_files_tree"], [15, 3, 1, "", "outfmt"], [15, 3, 1, "", "path"], [15, 3, 1, "", "with_counts"]], "mtbp3.util.catPlotter": [[15, 2, 1, "", "boxplot"], [15, 3, 1, "", "df"], [15, 3, 1, "", "fig_size_0"], [15, 3, 1, "", "fig_size_1"], [15, 2, 1, "", "generate_example_dataset"], [15, 3, 1, "", "grid_col"], [15, 3, 1, "", "grid_kws"], [15, 3, 1, "", "grid_wrap"], [15, 3, 1, "", "group_col"], [15, 2, 1, "", "lineplot"], [15, 3, 1, "", "point_position"], [15, 3, 1, "", "pt_size"], [15, 3, 1, "", "title"], [15, 2, 1, "", "update_parameters"], [15, 3, 1, "", "x_col"], [15, 3, 1, "", "x_label_rotate"], [15, 3, 1, "", "x_scale_base"], [15, 3, 1, "", "y_col"], [15, 3, 1, "", "y_scale_base"]], "mtbp3.util.cdt": [[13, 1, 1, "", "ListTree"], [13, 5, 1, "", "diff_2cols_in_1df"], [13, 5, 1, "", "diff_2cols_in_2df"], [13, 5, 1, "", "summarize_1nc_by_2group"]], "mtbp3.util.cdt.ListTree": [[13, 2, 1, "", "__list_tree_df"], [13, 2, 1, "", "__list_tree_pre"], [13, 3, 1, "", "df"], [13, 3, 1, "", "infmt"], [13, 3, 1, "", "label"], [13, 2, 1, "", "list_tree"], [13, 2, 1, "", "list_tree_with_keyword"], [13, 3, 1, "", "lst"], [13, 3, 1, "", "prelst"], [13, 3, 1, "", "tree"]], "mtbp3.util.cdtg": [[14, 1, 1, "", "catPlotter"]], "mtbp3.util.cdtg.catPlotter": [[14, 2, 1, "", "boxplot"], [14, 3, 1, "", "df"], [14, 3, 1, "", "fig_size_0"], [14, 3, 1, "", "fig_size_1"], [14, 2, 1, "", "generate_example_dataset"], [14, 3, 1, "", "grid_col"], [14, 3, 1, "", "grid_kws"], [14, 3, 1, "", "grid_wrap"], [14, 3, 1, "", "group_col"], [14, 2, 1, "", "lineplot"], [14, 3, 1, "", "point_position"], [14, 3, 1, "", "pt_size"], [14, 3, 1, "", "title"], [14, 2, 1, "", "update_parameters"], [14, 3, 1, "", "x_col"], [14, 3, 1, "", "x_label_rotate"], [14, 3, 1, "", "x_scale_base"], [14, 3, 1, "", "y_col"], [14, 3, 1, "", "y_scale_base"]], "mtbp3.util.lsr": [[16, 1, 1, "", "LsrTree"]], "mtbp3.util.lsr.LsrTree": [[16, 3, 1, "", "count_str"], [16, 2, 1, "", "list_files"], [16, 2, 1, "", "list_files_dataframe"], [16, 2, 1, "", "list_files_json"], [16, 2, 1, "", "list_files_list"], [16, 2, 1, "", "list_files_string"], [16, 2, 1, "", "list_files_tree"], [16, 3, 1, "", "outfmt"], [16, 3, 1, "", "path"], [16, 3, 1, "", "with_counts"]], "mtbp3.util.util": [[17, 4, 1, "", "_ROOT"], [17, 5, 1, "", "get_data"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "data", "Python data"], "5": ["py", "function", "Python function"]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:data", "5": "py:function"}, "terms": {"": [3, 4, 6, 7, 8, 18, 19, 20, 23, 24, 25, 27, 28, 35], "0": [3, 4, 5, 6, 7, 8, 13, 14, 15, 21, 22, 23, 25, 26, 27, 29, 30, 35, 37], "00": [3, 4, 37], "0006": 33, "001316446002000104": 33, "0013164481041003070": 33, "00393": 28, "00577": 33, "00_0": [3, 4], "022": 28, "03": 35, "036": 27, "03762": 37, "04": 37, "05": 33, "06513872135102527": 33, "08": 33, "09": [29, 35], "0_ctocv1": 24, "0m": [23, 24], "1": [0, 1, 3, 4, 6, 7, 8, 12, 19, 25, 26, 27, 28, 29, 35, 36, 37], "10": [5, 14, 15, 21, 22, 23, 24, 26, 28, 32, 33, 34, 35, 37], "100": [7, 8, 29, 32, 33, 34], "1000": [7, 8, 22, 33], "1007": 28, "1037": 34, "104": 27, "1093": 33, "11": [22, 23, 24, 31, 32, 33, 34, 35, 37], "1111": 33, "11238": 36, "11239": 36, "11240": 36, "11615": 36, "11616": 36, "11712": 27, "1177": 33, "12": [22, 23, 24, 31, 32, 33, 34, 35], "13": [22, 23, 24, 33], "14": [22, 23, 24, 34], "14289": 37, "14872": 36, "14989733059548255": 34, "15": [22, 23, 24, 25, 33, 34, 35, 37], "1582": 22, "159": 33, "15930": 37, "16": [22, 23, 24, 35], "16791": 36, "17": [23, 24, 25, 26, 27], "1706": 37, "174": 33, "18": [23, 24], "19": [22, 23, 24, 35], "19005": 37, "1971": 34, "1977": 33, "1981": 33, "19844": 36, "19908214": 25, "19926972": 25, "19986360": 25, "1_n": 32, "1j": 34, "2": [2, 6, 7, 8, 22, 25, 26, 27, 28, 29, 31, 32, 34, 35, 36, 37], "20": [12, 22, 23, 24, 27, 33, 34], "2000": [22, 33], "2004": 36, "2005": [33, 37], "2011": 37, "2012": [25, 36, 37], "2013": [25, 26, 27, 28, 37], "2014": [31, 35, 36], "2015": [25, 35], "2016": [36, 37], "2017": 36, "2019": 36, "2020": [23, 24, 25, 26, 27, 28, 36, 37], "2021": [23, 24, 37], "2022": [27, 31, 35], "2023": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "2024": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "20440": 36, "20443": 36, "20451": 36, "20982": 33, "21": [31, 32, 33, 34, 35, 37], "210": 25, "22": [22, 31, 32, 33, 34], "2215244": 37, "2253": [23, 24], "23": [22, 27, 29, 33, 35], "230": 26, "24": [22, 34], "24517": 37, "25": [22, 35, 36], "257": 33, "26": [25, 26, 27, 35, 36], "268": 33, "27": 35, "276": 33, "27_kappa": 34, "27s_kappa": 33, "27s_rank_correlation_coeffici": 31, "28": 29, "282": 33, "29": [22, 35], "2_ctocv2": 23, "2j": 34, "2r": 34, "3": [2, 10, 21, 22, 25, 26, 27, 28, 29, 31, 32, 34, 35, 36, 37], "30": [22, 33, 34], "31": [22, 33, 34], "32": [33, 34], "32mdsur": [23, 24], "33": 33, "3399": 21, "34": [22, 33], "341x": 33, "35": 33, "35mdsur": [23, 24], "35mrem": [23, 24], "36": 29, "37": 33, "378": 34, "38": 21, "382": 34, "39": [22, 26, 33], "3d": 37, "3j": 34, "3r": 34, "4": [19, 22, 25, 26, 27, 28, 31, 32, 33, 34, 35, 36, 37], "40": [22, 33, 34, 36], "41": 33, "42": 22, "43": [22, 37], "45": [21, 33], "46": [22, 33], "47": 22, "49": 33, "496558": 33, "5": [5, 12, 14, 15, 21, 22, 25, 26, 27, 28, 31, 32, 33, 34, 35, 37], "50": [33, 34], "500": 22, "510": 35, "52": 35, "520": 36, "536": 36, "55": 22, "56": [33, 35], "57": [28, 35, 36], "577": 33, "582": 33, "59": 33, "6": [5, 7, 8, 14, 15, 22, 23, 24, 25, 28, 31, 32, 33, 34, 35, 36, 37], "60": [33, 34], "62": 22, "63": 33, "64": 33, "68": 22, "687": 33, "696": 22, "699": 33, "69909345": 26, "69912916": 26, "69949049": 26, "6r": 34, "7": [5, 14, 15, 22, 23, 24, 33, 34, 35, 36, 37], "70": 33, "71": 22, "724138": 33, "726": 36, "75": 22, "76": 34, "777": 27, "778": 27, "779": 27, "780": 27, "79": 33, "7r": 34, "8": [22, 23, 24, 27, 33, 34, 35], "80": 33, "81": [33, 36], "82": 33, "839": 27, "85": 33, "88293": 31, "9": [21, 22, 23, 24, 32, 33, 34, 35], "90": 33, "907669": 33, "924": 25, "928": 25, "95": [7, 8, 33], "A": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 33, 34, 35, 36, 37], "As": [33, 35], "BE": [23, 24], "Being": 19, "By": [20, 30], "FOR": [21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 35, 36, 37], "For": [25, 26, 28, 31, 33, 34, 37], "If": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 35, 36, 37], "In": [19, 23, 24, 27, 31], "Ise": [23, 24], "It": [5, 7, 8, 10, 30], "NOT": 27, "No": 36, "Not": 37, "That": 33, "The": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "There": [26, 27, 33], "To": [21, 22, 23, 24, 25, 26, 27, 29, 31, 32, 33, 34, 35, 37], "_": 33, "__calculate_cohen_kappa": [7, 8], "__calculate_fleiss_kappa": [7, 8], "__convert_2dlist_to_str": [7, 8], "__g": 6, "__init__": 1, "__list_tree_df": [5, 13, 15], "__list_tree_pr": [5, 13, 15], "__load_list": 2, "__version__": [5, 30], "_e": 34, "_o": 34, "_root": [5, 15, 17], "a_valid_folder_path": 27, "ab": [32, 37], "abbrevi": 35, "abid": [20, 30], "about": [10, 12, 20, 26, 35, 36, 37], "abov": [27, 33], "absorpt": [23, 24, 35], "abus": [19, 23, 24], "acceler": [23, 24, 35], "accept": [19, 26], "access": [10, 23, 24, 25, 37], "accesslib": [10, 35], "accompani": [23, 24], "account": 19, "acquisit": 35, "acrobat": 37, "act": [19, 23, 24], "actarm": [5, 13, 15], "action": [19, 37], "activ": [25, 26, 27, 28], "active_onli": [3, 4], "ad": [23, 24, 29], "adam": [23, 24, 35], "adapt": 19, "add": [18, 20, 25, 37], "addit": [5, 14, 15, 20, 27, 33], "address": [19, 23, 24], "adjust": [18, 32], "admin": 24, "administr": [23, 24, 36], "adob": 37, "adopt": 35, "advanc": [19, 24, 25, 27], "adventiti": [23, 24], "advers": [23, 24, 27, 28], "advic": [23, 24], "advisori": [23, 24], "advoc": [31, 32, 33, 34], "after": 29, "afterward": 33, "ag": 19, "agenc": [23, 24, 35], "agent": [23, 24], "agre": [20, 30, 33, 36], "agreement": [23, 33, 34], "aidc": 36, "alert": [23, 24], "algorithm": [18, 26, 27], "align": [5, 13, 15, 18, 19, 27], "all": [3, 4, 5, 18, 19, 20, 22, 23, 24, 25, 26, 27, 31, 34], "all_str_digit": [3, 4], "allow": [7, 8, 37], "almost": 33, "alon": 34, "along": [5, 12, 13, 15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "alreadi": [25, 35], "also": [25, 26, 32, 33], "altern": 33, "although": [22, 32], "alwai": 20, "amend": [23, 24], "among": 34, "an": [1, 3, 4, 5, 10, 12, 14, 15, 19, 21, 22, 23, 24, 25, 27, 29, 30, 33, 35, 37], "analys": [23, 24, 25, 26], "analysi": [23, 24, 31, 32, 33, 34, 35], "analyt": [23, 24, 27], "analyz": 35, "anda": [23, 24], "ani": [12, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 31, 32, 33, 34, 35, 36, 37], "anim": [23, 24], "annot": [23, 24], "annual": [23, 24], "anoth": [21, 23, 24, 25, 33], "antibacteri": [23, 24], "antibodi": [23, 24], "antigen": [23, 24], "antivir": [23, 24], "anyth": 20, "api": [10, 25, 35], "appear": 19, "appendic": [23, 24], "appl": 33, "appli": 19, "applic": [22, 23, 24, 33, 37], "appoint": 19, "apprais": 33, "appreci": 20, "approach": 28, "appropri": [19, 20], "approv": [23, 24, 35, 36], "approxim": [33, 34], "ar": [3, 4, 5, 7, 8, 13, 15, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 35, 36], "architectur": 37, "archiv": [35, 37], "argument": [5, 14, 15], "arm": [5, 13, 15], "articl": [20, 28, 33, 36], "arxiv": 37, "assai": [23, 24], "assert": [3, 4], "assert_term": [3, 4], "assertionerror": [3, 4], "assess": [23, 24, 35], "assign": 31, "assist": 36, "associ": [3, 4, 23, 24], "assum": [31, 33, 34], "assumpt": [32, 33, 34], "assur": [23, 24], "attack": 19, "attent": [19, 37], "attribu": 35, "attribut": [23, 27, 35], "attributeerror": 27, "audienc": [23, 24], "audio": 37, "audit": [23, 24], "author": [23, 24, 27, 30, 31, 32, 33, 34], "auto": 0, "autoapi": 0, "automat": 36, "avail": [23, 24, 25, 27, 35], "averag": [31, 34], "ax": 6, "axi": [5, 7, 8, 14, 15, 18], "axis_label": [6, 7, 8, 32], "b": [20, 28, 32, 34], "ba": [23, 24], "background": [23, 24, 37], "bader": 28, "badg": 30, "ban": 19, "banerje": 33, "bar": 34, "base": [1, 5, 7, 8, 10, 13, 14, 15, 16, 23, 24, 26, 27, 33, 36, 37], "baseurl": 10, "basi": [23, 24], "basic": [21, 22, 26, 27, 35], "basu": 33, "batch": [23, 24, 37], "bayesian": 33, "becom": 32, "been": 35, "befor": [20, 25], "begin": 35, "behavior": [18, 19], "below": [5, 13, 15, 30, 33, 34, 35], "best": 19, "between": [5, 6, 12, 13, 15, 33], "beyond": 34, "bia": 33, "bias": 33, "bimo": [23, 24], "bin": 1, "bind": [23, 24], "binder": 18, "bioanalyt": [23, 24], "bioavail": [23, 24], "biochemia": 33, "bioequival": [23, 24], "biolog": [24, 35], "biomark": [23, 24, 35], "biomateri": [23, 24], "biometr": 33, "biopharmaceut": [23, 24], "birr": 27, "bit": 20, "bla": [23, 24], "blo": 35, "blog": 20, "bodi": [19, 23, 24], "bool": [3, 4, 5, 6, 10, 12, 13, 15], "bootstrap": [7, 8, 34], "bootstrap_cohen_ci": [7, 8, 33], "borkowski": 31, "both": [5, 13, 15, 19, 25, 32, 34], "box": [5, 14, 15, 21, 30], "boxplot": [5, 14, 15, 21], "branch": 20, "brennan": 33, "broad": 27, "brochur": [23, 24], "browser": 25, "bubbl": [7, 8, 18], "bug": 18, "bugfix": 20, "build": [30, 35], "bullet": [33, 34], "bulletin": 34, "busi": [23, 24, 35], "byte": 37, "c": [21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 33, 34, 35, 36, 37], "c139020": 35, "c142191": 35, "c156638": 35, "c179587": 35, "c201266": 35, "c201267": 35, "c42610": 35, "c67497": 35, "c71733": 35, "c80442": 35, "cach": 21, "cad": 37, "calcul": [1, 5, 6, 7, 8, 13, 15, 31, 32, 33, 34], "calculate_kendall_tau": [6, 32], "call": 27, "calori": 22, "can": [7, 8, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "cancer": 35, "cannot": 21, "capit": 25, "captur": 36, "car": 32, "carcinogen": [23, 24], "cartesian": 32, "carton": [23, 24], "case": [3, 4, 23, 24, 25, 27, 31], "cat_plot": 21, "catalog": 35, "categor": [1, 5, 13, 14, 15, 33, 34], "categori": [21, 26, 34, 35], "catplott": [5, 14, 15], "caus": 33, "cber": 35, "cda": 18, "cdash": 35, "cdashig": 35, "cder": 35, "cdisc": [10, 30], "cdiscid": 35, "cdsic": 35, "cdt": [0, 15, 18, 30], "cdtg": [0, 15, 18, 21, 30], "cell": [23, 24, 27], "certain": 37, "certif": [23, 24], "chanc": 34, "chang": [18, 20, 23, 24, 25], "character": [23, 24], "characterist": [23, 24, 33], "charg": [23, 24], "check": [3, 4, 5, 13, 15, 20, 25, 27, 30], "checkout": 20, "child": 26, "choic": 33, "ci": 34, "circumst": 19, "cl": 35, "claim": [23, 24], "clarifi": 19, "classif": 27, "clean": [23, 24], "clinic": [0, 4, 18, 23, 24, 25, 26, 27, 28, 30, 35, 36], "clio": 27, "close": 32, "closur": [23, 24], "coa": 35, "code": [3, 4, 25, 26, 27, 28, 30, 35], "codelist": 10, "coeffici": [6, 31, 32, 33], "cohen": [7, 8, 18, 34], "cohen_kappa": 33, "cohen_kappa_scor": 33, "col": [5, 13, 15], "col1": [5, 13, 15], "col2": [5, 13, 15], "collabor": 35, "collect": [22, 35], "color": [2, 18, 23, 24], "color_output": 2, "column": [1, 5, 6, 13, 14, 15, 18, 25, 33, 34], "com": 33, "combin": [1, 5, 13, 15, 34], "comment": [19, 23, 24], "commit": [19, 20, 23, 24], "committe": [23, 24], "common": [23, 24], "commonli": [25, 26, 27, 28, 37], "commun": [19, 25, 26, 27, 28, 35, 36], "compar": [5, 13, 15, 23, 24, 33, 35], "comparison": [23, 24], "complaint": 19, "complement": 36, "complet": [27, 33], "complianc": [23, 24, 37], "compliant": 37, "compon": [24, 32], "composit": [23, 24], "comput": 33, "concentr": [23, 24], "conceptid": 35, "conclus": [23, 24, 37], "concomit": 27, "condit": [26, 27], "conduct": 30, "confid": [7, 8, 33], "confidence_level": [7, 8, 33], "confidenti": 19, "conform": [20, 35, 37], "consent": [23, 24], "consid": [3, 4, 19, 32], "consider": [33, 35], "consist": [35, 36], "consolid": 27, "consortium": 35, "constitu": 37, "construct": 19, "contact": [19, 23, 24], "contain": [0, 1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 15, 23, 24], "content": 27, "continu": [21, 31, 35], "contribut": 19, "contributor": [19, 37], "control": [23, 24, 35], "convert": [1, 3, 4, 7, 8, 10], "cookiecutt": 30, "copi": [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "copyright": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "core": 36, "corpor": [23, 24], "corr": [0, 7, 30], "corrcalcul": [6, 32], "correct": [19, 23, 24, 27], "correl": [6, 23, 24, 30, 31, 32], "correspond": [3, 4, 10, 12, 23, 24, 25, 31, 32, 34], "could": [19, 33, 34], "council": [25, 26, 27, 28], "count": [1, 7, 8, 18, 22, 26, 27, 29], "count_by_group": 1, "count_df": [7, 8], "count_sq_df": [7, 8], "count_str": [5, 15, 16], "count_to_c": [1, 22], "cov": 34, "coven": 19, "cover": [23, 24], "creat": [0, 5, 7, 8, 13, 14, 15, 19, 20, 21, 29, 30, 32, 33, 35, 37], "create_bubble_plot": [7, 8, 33], "creation": 37, "credit": 20, "crf": [23, 24], "criterion": 33, "critic": [19, 23, 24, 33], "cross": [23, 24], "csv": [3, 4, 25, 27], "ct": [10, 18], "ct_df": 35, "ct_list": [10, 35], "ct_list_titl": [10, 35], "ct_packag": [10, 35], "ctoc": 2, "ctoc_by_fda": [2, 23, 24], "ctoc_vers": [2, 24], "current": [20, 23, 24, 25, 27, 28, 30, 35, 36, 37], "cutoff": [5, 13, 15], "cvalu": 21, "cvaluegroup": 21, "d": [27, 29, 31, 32, 33], "data": [1, 5, 6, 7, 8, 14, 15, 18, 21, 22, 23, 24, 25, 27, 30, 33, 34, 35, 36, 37], "datafram": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 25, 26, 29, 31, 35], "dataset": [1, 5, 14, 15, 22, 23, 24, 35], "date": [10, 23, 24, 29, 35, 37], "ddf": 35, "ddot": [33, 34], "debar": [23, 24], "decod": 37, "decreas": 21, "deem": 19, "default": [1, 3, 4, 5, 6, 7, 8, 12, 13, 14, 15, 16, 25, 27], "deferr": [23, 24], "defin": [19, 27, 31, 33, 35], "definit": [23, 24, 26, 35], "degre": 33, "demo": 12, "demograph": [23, 24], "demonstr": [25, 26, 27], "depend": [23, 24, 30, 31, 37], "deprec": 35, "deprecationwarn": 21, "deriv": 34, "derogatori": 19, "describ": [26, 27, 28, 29, 33, 34], "descript": [23, 24, 35, 36], "descriptor": 24, "design": [1, 23, 24, 28, 29], "desir": [7, 8], "desktop": 25, "detail": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "determin": [7, 8, 19, 23, 24, 35], "develop": [20, 23, 24, 25, 26, 27, 28, 35, 36], "development": [23, 24], "deviat": [23, 24], "devic": [23, 24, 35], "df": [1, 5, 13, 14, 15, 18, 22, 25], "df1": [5, 13, 15], "df2": [5, 13, 15], "diagnost": [23, 24], "dict": [5, 10, 12, 14, 15], "dictionari": [10, 12, 25, 26, 27, 28, 36], "did": 34, "diff": [5, 13, 15], "diff_2cols_in_1df": [5, 13, 15], "diff_2cols_in_2df": [5, 13, 15], "differ": [5, 13, 15, 19, 33], "digit": [3, 4, 7, 8, 35], "dillman": 28, "dimension": [6, 7, 8], "directori": [5, 15, 16], "disabl": 19, "disagr": 33, "disclaim": [23, 24, 31, 32, 33, 34], "disclosur": [23, 24], "discontinu": [23, 24], "discours": 31, "discuss": [33, 34, 36], "diseas": [23, 24], "displai": [7, 8, 12, 23, 24], "disput": [23, 24], "dissemin": [23, 24], "distribut": [21, 22, 23, 24, 27, 28, 29, 33, 34, 35, 36, 37], "do": [19, 25], "doc": [18, 20, 23, 24, 31, 32], "docstr": 20, "document": [0, 18, 23, 24, 26, 30, 35, 37], "doe": [1, 5, 13, 15, 25, 27, 28, 31, 32, 33, 34], "doi": [28, 33, 34], "domain": 27, "done": 20, "dosag": [23, 24, 36], "dose": [23, 24], "dot": 37, "down": 27, "download": [10, 20, 25, 35], "downstream": 26, "draft": [23, 24], "drawn": 35, "driven": 20, "drop": 27, "dropout": 22, "drug": [23, 24, 35], "dsur": [2, 23, 24], "dtype": [26, 27], "duclo": 25, "duke": 27, "dump": 35, "durat": [23, 24], "dure": [27, 36], "dutta": [25, 26, 27, 28], "e": [19, 23, 24, 32, 33, 34, 37], "e3": [23, 24], "e316": [23, 24], "each": [3, 4, 6, 10, 22, 26, 33, 34], "earli": [23, 24], "easi": 33, "easier": 20, "ec": 36, "ecg": [23, 24], "ectd": [0, 4, 18, 30], "ectd_vers": [2, 24], "edg": 1, "edit": 19, "edu": [31, 33], "educ": 33, "effect": [10, 35], "effectived": 35, "efficaci": [23, 24], "effici": 35, "effort": 35, "either": [3, 4, 7, 8, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "el": 32, "electron": [19, 23, 24, 35, 36], "element": [1, 3, 4, 6, 12, 18, 31, 32, 34, 36], "elucid": [23, 24], "embed": 37, "embryofet": [23, 24], "embryon": [23, 24], "emerg": [23, 24], "empathi": 19, "empti": [1, 3, 4, 5, 10, 14, 15, 25, 29, 37], "emt": [0, 4, 18, 25, 26, 27, 28, 30], "emt2": 18, "en": [31, 32, 33, 34], "encod": 37, "encrypt": 37, "encyclopedia": 32, "encyclopediaofmath": 32, "end": 35, "enforc": [23, 24], "engag": 35, "engin": 37, "english": [25, 26, 27, 37], "enhanc": 20, "enough": 20, "enterpris": 35, "entiti": 35, "entri": 5, "environ": 19, "environment": [23, 24], "eq": [31, 32, 34], "equal": 31, "equat": 34, "equip": [23, 24], "equiv": [32, 33], "estim": [33, 34], "etc": [25, 27, 35, 36, 37], "ethnic": 19, "eua": [23, 24], "eudravigil": 36, "ev": 35, "evalu": [23, 24], "even": [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "event": [19, 23, 24, 27], "everi": 20, "everyon": 19, "everyth": 37, "evolv": 35, "exact": 25, "exactli": 33, "exampl": [1, 5, 14, 15, 16, 18, 19, 21, 25, 29, 30, 37], "excel": 35, "except": [23, 24], "exchang": 35, "excipi": [23, 24], "exclud": [23, 24], "exclus": [23, 24], "excret": [23, 24], "execut": [22, 30, 35], "exhaust": 33, "exist": [1, 5, 13, 15], "expand": [23, 24], "expect": [3, 4, 19, 33, 34], "expected_file_list": [3, 4], "experi": [19, 23, 24], "expert": 28, "explain": 20, "explicit": 19, "express": [19, 32, 34, 35], "extend": [36, 37], "extra": 25, "extrins": [23, 24], "f": 29, "face": 19, "facetgrid": [5, 14, 15], "facil": [23, 24], "factor": [23, 24, 33], "fair": [19, 33], "faith": 19, "fals": [2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 15, 16, 25, 27], "fast": [23, 24], "faster": 25, "fda": [3, 4, 35, 36, 37], "fda_ectd3": 23, "fda_ectd4": 24, "feed": 37, "feel": 20, "fertil": [23, 24], "field": [23, 24], "fig_size_0": [5, 14, 15], "fig_size_1": [5, 14, 15], "figur": [5, 14, 15], "file": [3, 4, 5, 10, 12, 15, 16, 23, 24, 25, 26, 29, 35, 37], "file1": [5, 15, 16], "file2": [5, 15, 16], "file3": [5, 15, 16], "file_path": [3, 4, 27], "file_typ": 29, "filenam": 25, "filenotfounderror": 10, "fill": 33, "filter": [3, 4], "filterwarn": 21, "fin": [3, 4], "final": [23, 24, 35], "financi": [23, 24], "find": [3, 4, 30, 33, 34], "find_fil": [3, 4, 25, 26, 27], "find_fmq": [3, 4, 27], "find_fmq_fil": [3, 4, 27], "find_hlgt": [3, 4], "find_hlt": [3, 4], "find_llt": [3, 4], "find_llt_given_pt": [3, 4, 25], "find_llt_given_soc": [3, 4, 25], "find_pt": [3, 4, 25], "find_pt_given_soc": [3, 4, 25], "find_section_given_word": [2, 23, 24], "find_smq": [3, 4, 18, 26], "find_soc": [3, 4, 25], "find_soc_given_pt": [3, 4, 25], "find_term_wi_level": [3, 4], "find_terms_given_fmq": [3, 4, 27], "find_terms_given_smq": [3, 4, 26], "find_terms_given_smq_sub": [3, 4], "first": [5, 6, 7, 8, 13, 15, 25, 27, 33, 34], "fit": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "five": 36, "fix": [18, 32, 34], "flag": [3, 4, 12], "flatten": 26, "fleiss": [7, 8, 18], "fleiss_kappa": 34, "float": [5, 6, 13, 15], "flow": 35, "fmq": [3, 4, 18], "fmq_class": 27, "fmq_class_pt": 27, "fmq_list": [3, 4, 27], "fmq_list_default": [3, 4], "fmq_list_uniqu": [3, 4], "focus": 19, "folder": [3, 4, 27], "folder_nam": [2, 3, 4, 25, 26, 27], "folder_path": [3, 4, 27], "follow": [19, 25, 32, 33, 35], "font": 37, "foreign": [23, 24], "form": [23, 24, 32, 36], "format": [5, 7, 8, 12, 15, 16, 20, 23, 24, 25, 27, 29, 35, 36, 37], "formula": [23, 24], "forward": 37, "foster": 19, "found": [5, 10, 14, 15, 18, 23, 24, 25, 26, 27, 32, 33, 37], "foundat": [21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 37], "four": 36, "frac": [31, 32, 33, 34], "free": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "freq": 33, "from": [5, 6, 10, 12, 19, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 37], "fruit": 33, "ft": 35, "ftp": 35, "full": 35, "function": [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 30, 31, 34, 35, 37], "fungi": [23, 24], "further": [19, 23, 24, 25, 26, 29], "futur": 28, "futurewarn": 21, "g": [23, 24, 32, 33], "gave": 34, "genbadg": 30, "gender": 19, "gene": [23, 24], "gener": [0, 1, 5, 14, 15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35, 36, 37], "generate_dataset": 1, "generate_example_dataset": [5, 14, 15], "genotox": [23, 24], "geo": 30, "geq": [33, 34], "get": [3, 4, 10, 25, 27], "get_ct_codelists_df": [10, 35], "get_ct_list": [10, 18, 35], "get_ct_packag": [10, 18, 35], "get_data": [5, 15, 17], "get_outline_list": 12, "get_summary_df": 12, "get_summary_str": [12, 37], "git": 20, "github": [20, 25, 30], "given": [3, 4, 20, 21, 29, 31, 33], "glossari": 35, "gnu": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "goal": 27, "good": 19, "gov": 33, "gp": [5, 13, 15], "gracefulli": 19, "graph": 30, "greater": [31, 34], "greatli": [20, 32], "green": [23, 24], "gregori": 28, "grid": [5, 14, 15], "grid_col": [5, 14, 15], "grid_kw": [5, 14, 15], "grid_wrap": [5, 14, 15], "group": [1, 5, 13, 14, 15, 18, 21, 26, 27, 28, 30, 35], "group_col": [5, 14, 15, 21], "group_col0": [5, 13, 15], "group_col1": [5, 13, 15], "group_column": 1, "grouped_df": 1, "gro\u00dfe": 28, "guarante": [23, 24], "guid": [23, 24, 35], "guidanc": [23, 24, 35, 36], "guidelin": 30, "h": 32, "h0031619": 34, "ha": [23, 24, 26, 27, 31, 33, 35], "hallgren": 33, "harass": 19, "hardwar": 37, "harm": 19, "harmon": [35, 36], "harmonis": [25, 26, 27, 28], "hat": 33, "have": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 33, 34, 35, 36, 37], "head": [22, 35, 37], "health": [0, 5, 22, 23, 24, 25, 26, 27, 30, 36], "healthcar": [23, 24], "healthi": [23, 24], "height": [5, 14, 15], "help": [20, 23, 24], "hepat": [23, 24], "here": [20, 26, 27, 30, 35, 37], "hf": [23, 24], "hier": 18, "hierarch": [12, 26], "hierarchi": [3, 4], "high": [22, 33], "higher": [33, 35], "hist": [7, 8, 18, 33], "histori": [23, 24, 27], "hlgt": [3, 4, 25], "hlt": [3, 4, 25], "holder": 28, "home": [21, 23, 24, 35], "homepag": 19, "hope": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "horizont": 21, "host": 27, "how": 20, "hsu": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "htm": 33, "html": [30, 31, 32, 35], "http": [10, 28, 30, 31, 32, 33, 34, 35, 37], "human": [23, 24, 25, 26, 27, 28, 36], "hypothesi": 34, "i": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37], "i0": 34, "i1": [31, 32, 34], "i2": [31, 32, 34], "ich": 30, "id": [3, 4, 23, 24, 25, 26], "id_studi": 24, "ident": 19, "identif": [23, 36], "identifi": [23, 36], "iec": [23, 24], "ig": 35, "ignor": [3, 4, 21], "ignore_cas": [3, 4, 18, 25, 27], "ij": [32, 34], "ij1": 32, "ij2": 32, "ik": 34, "illustr": [32, 37], "imag": [23, 24, 37], "imageri": 19, "img": 30, "immun": [23, 24], "immunotox": [23, 24], "impact": 33, "implement": [23, 24, 27, 32, 35], "impli": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "import": [5, 18, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 37], "improv": [27, 28, 35, 36], "impur": [23, 24], "inactiv": [23, 24], "inappropri": 19, "incid": 19, "includ": [2, 3, 4, 10, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 33, 34, 35, 36, 37], "inclus": 19, "incorpor": [23, 24], "increas": 32, "ind": [23, 24], "indent": 18, "independ": [32, 33, 34], "index": [25, 30, 32], "indic": [3, 4, 5, 6, 12, 13, 15, 23, 24, 33, 35], "individu": [19, 23, 24, 33, 37], "infer": 33, "infmt": [5, 7, 8, 13, 15], "inform": [10, 12, 19, 23, 24, 25, 26, 29, 35, 36], "informat": 36, "initi": [1, 23, 24, 30, 35], "innov": 28, "input": [1, 3, 4, 5, 6, 7, 8, 10, 13, 14, 15, 25], "input_fil": 10, "insert": [23, 24], "insign": 35, "instal": [20, 27], "instanc": [3, 4, 5, 14, 15, 19], "institut": [27, 35], "instruct": [30, 35], "insult": 19, "int": [1, 3, 4, 5, 7, 8, 12, 14, 15], "int64": [26, 27], "integ": [1, 12], "integr": [23, 24], "intend": [31, 32, 33, 34], "intent": [23, 24], "inter": [23, 24, 33, 34], "inter_rat": 34, "interact": [3, 4, 18, 23, 24, 27], "interchan": 35, "interchang": 35, "interest": [19, 26, 27, 30], "interim": [23, 24], "intermedi": [23, 24], "intern": [25, 26, 27, 28, 36, 37], "internation": 36, "interrat": 33, "interv": [7, 8, 33], "intra": 33, "intrins": [23, 24], "introduct": [23, 24, 28, 31, 36, 37], "invalid": [1, 5, 14, 15], "investig": [19, 23, 24, 36], "involv": 27, "io": 30, "ir": 34, "irb": [23, 24], "iso": 30, "iss": [23, 24], "issu": [19, 20, 23, 24, 33], "item": [5, 13, 15, 35], "iter": [7, 8, 12], "its": [19, 20, 30], "j": [32, 33, 34, 37], "j1": 32, "j2": 32, "j_1": 33, "j_2": 33, "jasonpott": 25, "jb": 25, "jj": 33, "jmp": 26, "jobo": 31, "john": [31, 33], "join": [23, 24, 27], "json": [5, 15, 16, 35], "jul": 29, "julia": 31, "julialang": 31, "justif": [23, 24], "juvenil": [23, 24], "k": [32, 33, 34, 35], "kappa": [0, 7, 18, 30], "kappacalcul": [7, 8, 33, 34], "keep": [20, 26], "keep_column": [3, 4], "keep_diff_onli": [5, 13, 15], "kei": [10, 12, 35], "kendal": [6, 18], "kendall_rank_correlation_coeffici": 32, "kendall_tau_metr": 32, "kendalltau": 32, "keyword": [5, 13, 14, 15], "know": [32, 37], "koch": 33, "kwarg": [5, 14, 15], "l": [28, 33, 34], "lab": 27, "label": [5, 6, 7, 8, 12, 13, 15, 23, 24, 28, 35], "label_str": [5, 15, 16], "laboratori": [23, 24], "lami": 25, "landi": 33, "languag": [3, 4, 19, 25, 26, 27], "larg": 34, "last": 27, "later": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "launch": [23, 24], "ldot": [31, 32, 33, 34], "leadership": 19, "least": [6, 26], "left": [32, 34, 37], "legaci": [23, 24], "legisl": 36, "length": [3, 4, 32], "leq": 33, "less": [5, 13, 15, 31, 32], "lesson": 33, "let": [31, 32, 33, 34], "letter": [23, 24, 25, 35], "level": [3, 4, 7, 8, 19, 26, 29, 33, 35, 37], "liabil": [23, 24], "lib": [0, 9, 18, 21, 30, 35], "librari": 10, "licens": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "life": [23, 24], "limit": 34, "line": [5, 14, 15, 21, 23, 24, 27, 33], "lineplot": [5, 14, 15, 21], "link": [23, 24, 30], "linux": 29, "list": [1, 3, 4, 5, 6, 7, 8, 12, 13, 15, 16, 23, 24, 25, 26, 33, 35], "list0": 27, "list1": 27, "list2": 27, "list_fil": [3, 4, 5, 15, 16, 29], "list_files_datafram": [5, 15, 16], "list_files_json": [5, 15, 16], "list_files_list": [5, 15, 16], "list_files_str": [5, 15, 16], "list_files_tre": [5, 15, 16], "list_tre": [5, 13, 15, 27], "list_tree_with_keyword": [5, 13, 15], "listtre": [5, 13, 15, 27], "literatur": [23, 24], "littl": 20, "llt": [3, 4, 25, 26], "llt_by_soc": 18, "llt_current_onli": [3, 4], "llt_onli": [3, 4], "load": 37, "load_fmq": [3, 4], "load_fmq_default": [3, 4], "load_llt": [3, 4], "load_smq": [3, 4], "loc": 6, "local": [20, 23, 24], "log": [23, 24], "long": [23, 24, 37], "longer": 23, "look": 20, "low": [22, 33], "lowercas": 25, "lowest": [3, 4], "lsr": [0, 5, 15, 18, 27, 29, 30], "lsrt": [3, 4], "lsrtree": [3, 4, 5, 15, 16, 29], "lst": [3, 4, 5, 13, 15, 27], "m": [28, 33], "mac": 29, "macdonald": 28, "machin": 37, "magenta": [23, 24], "mai": [19, 21, 22, 25, 26, 27], "mail": 19, "main": 35, "maintain": [19, 25, 26, 27, 28, 35, 36, 37], "mainten": 36, "make": [19, 20, 27], "manag": [23, 24], "mandat": 36, "mandatori": 36, "mani": 34, "manufactur": [23, 24], "map": 12, "march": 25, "margin": 33, "margoli": 27, "marker": 21, "market": [23, 24], "materi": [23, 24], "matern": [23, 24], "math": 31, "mathcal": 31, "mathemat": 32, "matrix": [7, 8, 32], "max_itr": 12, "max_level": 10, "max_size_ratio": [7, 8], "maximum": [7, 8, 12, 32], "mdhier": [3, 4], "meal": 22, "meant": 35, "measur": [23, 24, 31, 32, 33, 34, 36], "mechan": 35, "mechanist": [23, 24], "meddra": [3, 4, 30], "meddra_release_fil": [3, 4], "meddra_vers": 26, "media": 19, "median": 22, "medic": [3, 4, 23, 24, 25, 26, 27, 28, 35], "medica": 33, "medicin": [24, 35, 36], "medium": [23, 24], "meet": [20, 23, 24], "member": 19, "menu": 27, "merchant": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "merg": 35, "messag": 36, "metabol": [23, 24], "metabolit": [23, 24], "metadata": 37, "method": [3, 4, 5, 6, 7, 8, 10, 14, 15, 18, 23, 24, 31, 32, 33, 34], "methodologi": [23, 24, 28], "metric": [32, 33], "mgf": 34, "micha": 28, "microbiolog": [23, 24], "microbiologi": [23, 24], "might": [20, 33, 35], "migrat": 36, "minim": 33, "minimum": 32, "miss": [3, 4, 6, 7, 8, 23, 24], "misus": 33, "mitig": [23, 24], "mkdir": 29, "model": [33, 35, 37], "moder": 33, "modif": [23, 24, 37], "modifi": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "modul": [5, 18, 21, 22, 25, 26, 27, 28, 29, 35, 37], "monitor": [22, 23, 24, 33, 36], "montana": 31, "month": [3, 4, 25, 26, 27], "more": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "most": [25, 27], "mpid": 36, "mrct": 35, "msg": 21, "msso": 25, "mtbp3": [0, 20, 21, 22, 23, 24, 25, 26, 27, 29, 32, 33, 34, 35, 37], "much": 33, "multi": [22, 33, 34, 35, 37], "multinomi": 33, "multipl": [23, 24, 25, 33, 34, 35], "must": [6, 35], "my": 30, "mycobacteria": [23, 24], "n": [22, 23, 24, 26, 27, 31, 32, 33, 34], "n1": [31, 32, 34], "n2": [31, 32, 34], "n_": [32, 33, 34], "n_0": 34, "n_categori": [33, 34], "n_column": 29, "n_iter": [7, 8, 33], "n_page": 29, "n_rater": [33, 34], "n_row": 29, "n_soc": [25, 26, 27], "na": [6, 18, 33, 34], "name": [3, 4, 5, 13, 14, 15, 20, 23, 24, 25, 26, 27, 29, 35, 37], "nan": [5, 13, 15, 25], "narrow": [20, 27], "narrow_onli": [3, 4, 27], "nation": [19, 35], "ncbi": 33, "nci": 35, "ncit": 35, "nda": [23, 24], "ndarrai": 1, "necessari": [25, 26, 35], "need": [33, 35, 37], "neighbor": [5, 13, 15], "neither": [3, 4], "neq": 34, "network": 37, "never": 20, "new": [23, 24, 35], "newest": [10, 23, 24, 35], "nih": 33, "nj": 34, "nlm": 33, "nomenclatur": 23, "nomin": [33, 34], "non": [1, 23, 24, 25, 37], "nonclin": [22, 23, 24, 35], "none": [2, 3, 4, 5, 7, 8, 12, 13, 14, 15, 18, 21, 22, 29, 33], "nor": [3, 4], "normal": 34, "note": [20, 22, 23, 24, 25, 26, 27, 30, 32, 33, 34, 35], "notebook": 27, "notif": [23, 24, 35], "notifi": [23, 24], "novel": [23, 24], "np": 33, "nr": 34, "number": [5, 6, 7, 8, 12, 14, 15, 22, 23, 25, 31, 32, 33, 34, 37], "numer": [1, 5, 13, 15], "numpi": [1, 32], "nutshel": 37, "o": [24, 29, 34], "object": [3, 4, 5, 12, 13, 15, 37], "oblig": [19, 23, 24], "observ": [33, 34], "obtain": 12, "occurr": 1, "odm": 35, "offens": 19, "offici": [19, 20], "offlin": 19, "offspr": [23, 24], "one": [3, 4, 23, 24, 26, 31, 32, 33], "onli": [3, 4, 25, 26, 31, 32, 33, 34], "onlin": [19, 25, 33, 35], "open": [19, 20, 25, 29, 37], "oper": 20, "optim": 37, "option": [1, 3, 4, 5, 6, 12, 14, 15, 18, 26, 31, 35], "orang": 33, "order": [18, 31], "org": [10, 28, 31, 32, 33, 34, 35, 37], "organ": [3, 4, 23, 24, 25, 28, 35, 36, 37], "organis": 36, "orient": 19, "origin": [23, 24], "orphan": [23, 24], "other": [19, 22, 23, 24, 26, 32, 33], "otherwis": [3, 4, 5, 10, 13, 15, 19], "our": 37, "out": [2, 26, 30, 33], "out1": 1, "out_digit": [7, 8, 33], "out_fold": 10, "out_path": [7, 8], "outcom": [23, 24, 33, 34, 35], "outfmt": [2, 5, 7, 8, 13, 15, 16, 18, 23, 24, 29], "outlin": [12, 18, 37], "outline_list": 12, "output": [5, 7, 8, 15, 16, 18, 25, 26, 27, 33, 34, 35], "outstand": [23, 24], "overal": [23, 24, 34], "overview": [23, 24, 33, 36], "owl": 35, "ownership": [23, 24], "p": [23, 24, 31, 34], "p023": 33, "p2": 34, "p21": 35, "p3": 34, "p4": 34, "p_": [33, 34], "p_1": 34, "p_e": 33, "p_j": 34, "p_je": 34, "p_k": 34, "p_o": 33, "p_valu": [31, 32], "packag": [10, 18, 21, 23, 24, 30, 33, 37], "package_info": 35, "pad": [5, 13, 15], "page": [0, 18, 23, 24, 26, 27, 31, 32, 33, 34, 35, 36, 37], "pair": [31, 32], "panda": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 31], "paper": [27, 35], "parallel": 22, "paramet": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15], "parasit": [23, 24], "pars": 37, "part": [20, 35, 37], "particip": 19, "particular": [21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "pass": [20, 29], "patent": [23, 24], "path": [3, 4, 5, 7, 8, 10, 12, 13, 15, 16, 17, 25, 29, 37], "pathogen": [23, 24], "patient": [23, 24, 27], "pattern": [3, 4], "pd": [5, 15, 16, 23, 24], "pdf": [12, 18, 23, 24, 25, 26, 27, 28, 31, 35, 36], "pdf_path": 12, "pdfa": 37, "pdfreader": 12, "pdfsummari": [0, 11, 18, 30, 37], "pear": 33, "pediatr": [23, 24], "per": [22, 33, 34], "percentag": [5, 13, 15, 33], "perfect": 33, "perform": 1, "period": [23, 24], "perman": 19, "permiss": 19, "person": [19, 23, 24], "pertin": [23, 24], "pfr": [12, 37], "pharmaceut": [23, 24, 25, 26, 27, 28, 36], "pharmacodynam": [23, 24], "pharmacogenom": [23, 24], "pharmacokinet": [23, 24], "pharmacologi": [23, 24], "pharmasug": 27, "phase": 36, "php": 32, "phpid": 36, "physic": [19, 33], "pip": 30, "pivot": [5, 13, 15], "pk": [23, 24], "pkg": 30, "pkg_seri": 10, "pkgseri": 35, "place": [21, 28], "plan": [22, 23, 24, 35, 36], "plasma": [23, 24], "pleas": [20, 23, 24, 25, 26, 27, 30, 33, 34, 35], "plot": [5, 6, 7, 8, 14, 15, 18, 32], "plot_y_list": [6, 32], "pmc": 33, "pmc3900052": 33, "pmf": 31, "pmn": 35, "poetri": 20, "point": [5, 13, 14, 15, 21], "point_posit": [5, 14, 15], "polici": [19, 27], "polit": 19, "popul": [23, 24], "portabl": 37, "portion": 33, "posit": [19, 37], "possibl": 20, "post": [19, 20, 22, 23, 24, 36], "postapprov": [23, 24], "postmarket": [23, 24], "postnat": [23, 24], "pp": 12, "practic": [31, 32, 33, 34], "pre": [23, 24], "predig": 33, "prefer": [3, 4], "preferredterm": 35, "prelst": [5, 13, 15], "premarket": [27, 35], "prenat": [23, 24], "prepar": [29, 35], "preselect": 33, "present": 29, "presubmiss": [23, 24], "preval": 33, "preview": [18, 23, 24], "previous": [23, 24], "primari": [3, 4, 23, 24, 25], "primary_onli": [3, 4], "primary_soc_onli": [3, 4, 25], "principl": [28, 36], "print": [22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 37], "prioriti": [23, 24], "privat": 19, "pro": 37, "probabl": 34, "problem": 33, "proc": 33, "procedur": [23, 24], "process": [21, 22, 23, 24, 25, 26, 29, 33, 35], "processor": 37, "procon": 33, "product": [23, 24, 28, 32, 35, 36, 37], "proestel": 28, "profession": 19, "profil": [23, 24], "program": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "programm": 36, "project": [19, 20, 27, 30], "promis": 27, "promot": [23, 24, 31, 32, 33, 34], "proper": [24, 37], "properti": 23, "propos": [20, 23, 24], "proprietari": [23, 24], "protein": [23, 24], "protocol": [23, 24, 35], "provid": [3, 4, 5, 7, 8, 14, 15, 23, 24, 25, 27, 30, 31, 32, 33, 34], "provis": 36, "pseudo": 23, "psu": 33, "psycholog": [33, 34], "psychologi": 33, "pt": [3, 4, 25, 26], "pt_df": 27, "pt_list": 27, "pt_size": [5, 14, 15], "ptj": 33, "public": [19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "publish": [3, 4, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "purpos": [21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 35, 36, 37], "put": 33, "py": [21, 27, 30], "py3": 21, "pymedtermino": 25, "pypdf": 37, "pypi": 30, "pypoetri": 21, "python": [20, 25, 27, 30], "python3": 21, "q": 35, "qr": 35, "qualif": 35, "qualiti": [23, 24], "quantifi": 33, "quantit": 33, "queri": [3, 4, 26, 27], "questionnair": 35, "quick": [23, 24], "r": [23, 24, 25, 28, 31, 33, 34], "r1": [33, 34], "r2": [33, 34], "r3": 34, "r4": 34, "r5": 34, "r_": 31, "race": 19, "rais": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15], "randint": [29, 32], "random": [29, 31, 32, 33], "random_numb": 29, "randomis": [23, 24], "randomli": [25, 34], "rank": [31, 32], "rankstat": 31, "rao": 28, "rate": [7, 8, 33, 35], "rater": [7, 8, 33, 34], "ratio": [7, 8], "ratter": 33, "raw": 33, "rdf": 35, "re": 20, "reach": 35, "reaction": 28, "reactiv": [23, 24], "readi": 20, "readme_fil": [3, 4], "real": 27, "reason": [19, 27], "receiv": [21, 22, 23, 24, 25, 26, 27, 28, 29, 33, 35, 36, 37], "recent": 27, "record": [22, 25, 26, 27, 28, 35], "red": 2, "redistribut": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "reduc": 25, "referenc": [23, 24], "referenti": 36, "regard": [19, 23, 24], "regardless": 19, "regen": 24, "region": [23, 24, 35], "registrationstatu": 35, "regul": 36, "regular": 37, "regulatori": [23, 24, 25, 26, 27, 28, 35, 36, 37], "reinstat": [23, 24], "reissuanc": [23, 24], "reject": [19, 23, 24], "rel": 25, "relat": [3, 4, 23, 24, 25, 26, 27, 36], "relationship": [23, 24, 26, 28, 33], "releas": [20, 23, 24, 30], "reliabl": [30, 33, 34], "religion": 19, "rem": [2, 23, 24], "remain": 25, "rememb": 20, "remov": [3, 4, 6, 19, 29], "remove_na": 6, "remove_non": [3, 4], "repeat": [23, 24], "repercuss": 19, "replac": [25, 32], "report": [19, 22, 23, 24, 25, 26, 27, 28, 35, 36], "repositori": 25, "repres": [3, 4, 5, 7, 8, 12, 13, 15, 16, 19, 22, 32, 33, 34, 37], "represent": [7, 8, 12, 19], "reproduc": 20, "reproduct": [23, 24], "request": [10, 23, 24], "requir": [20, 23, 24, 25, 26, 27, 28, 33, 35, 36, 37], "research": [23, 24], "resolut": [23, 24], "resourc": 36, "respect": 19, "respond": 19, "respons": [23, 24, 25, 33], "rest": [33, 34], "result": [1, 3, 4, 5, 7, 8, 15, 16, 22, 23, 24, 25, 33, 37], "retriev": [10, 30], "return": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 25, 26, 27, 29], "reverse_i": [7, 8, 33], "review": [19, 23, 24], "revis": [36, 37], "revoc": [23, 24], "right": [5, 12, 13, 15, 18, 19, 23, 24, 27, 32, 34], "risk": [23, 24], "rmat": 24, "rmtree": 29, "roll": [23, 24], "roughli": 33, "round": [7, 8], "rout": [23, 24, 36], "row": [3, 4, 6, 33, 34], "rp_j": 34, "rule": [23, 24, 35], "runner": [21, 23, 24], "s43441": 28, "s_": [31, 34], "s_1": 31, "s_2": 31, "sa": 33, "safeti": [23, 24, 25, 26, 27, 28], "sai": 35, "same": [5, 13, 15, 22, 33, 34], "sampl": [18, 23, 24, 31, 32, 33, 34, 35], "sample_df": [7, 8], "sample_list": [7, 8], "save": [3, 4, 7, 8, 25, 35], "save_fmq_consolidated_list_csv": [3, 4, 27], "scale": [5, 14, 15, 33, 34, 35, 37], "scatter": [6, 32], "scenario": [32, 33], "schedul": 37, "scheme": [23, 24], "scienc": 28, "scipi": [31, 32], "scope": [20, 27], "sdtm": [23, 24, 35], "sdtmig": 35, "se": 33, "seaborn": 21, "search": [5, 13, 15, 18, 23, 24], "second": [5, 7, 8, 13, 15, 33, 34], "secondari": [23, 24], "section": [25, 26, 32], "see": [21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 34, 35, 36, 37], "seed": 33, "select": [27, 34], "self": [1, 10, 27, 37], "sen": 33, "send": [10, 23, 24, 35], "sendig": 35, "sens": 27, "sensit": [3, 4, 23, 24], "sep": 26, "separ": 19, "septemb": [25, 26, 27], "sequenc": 1, "seri": 10, "servic": [25, 35], "set": [10, 19, 20, 24, 25, 26, 27, 28, 33, 35], "setup": 20, "sever": 33, "sexual": 19, "shall": 33, "shape": [33, 34], "share": [23, 24, 25, 27, 33], "shield": 30, "ship": [25, 27], "short": [23, 24], "should": [3, 4, 12, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "show": [5, 13, 15, 18, 19, 30, 32, 35], "show_ctoc_tre": [2, 23, 24], "show_fmq_tre": [3, 4, 27], "show_outline_tre": [12, 37], "shutil": 29, "sign": [32, 35], "signatur": [23, 24], "signific": [23, 24], "sim": [31, 33, 34], "similar": [20, 25], "simpl": [2, 5, 13, 15], "simpli": 25, "simplifi": [27, 31, 33], "simul": 27, "singl": [23, 24, 31, 33], "site": [21, 23, 24], "size": [5, 7, 8, 14, 15, 19, 21, 27, 29, 31, 32, 33, 37], "size_in_byt": 29, "sklearn": 33, "slight": 33, "small": 32, "smari": 30, "smq": [3, 4, 18, 28], "smq916fxwgunhqihpu": 26, "smq_algorithm": 26, "smq_content": [3, 4], "smq_descript": 26, "smq_description657tlcpxpwehstw": 26, "smq_id": 26, "smq_level": 26, "smq_list": [3, 4], "smq_name": 26, "smq_note": 26, "smq_note619xvqsmalebtohgxntmzpjq": 26, "smq_sourc": 26, "smq_source174ddcfdqhebxrmoojigrqawetdkqjd": 26, "smq_statu": 26, "soc": [3, 4, 18, 25, 27], "soc_nam": [3, 4, 25], "social": 19, "softmax": 37, "softwar": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37], "some": [25, 33, 35, 37], "sometim": 33, "sourc": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 17, 25, 27, 35, 37], "space": [5, 13, 15, 19], "spatial": 30, "spearmanr": 31, "speci": [23, 24], "special": [23, 24, 27, 37], "specialti": [23, 24], "specif": [3, 4, 19, 23, 24, 26, 36, 37], "specifi": [1, 3, 4, 5, 10, 15, 16, 23, 24, 25, 37], "sphinx": 0, "sponsor": [23, 24], "spor": 36, "sqrt": [32, 33], "stabil": [23, 24], "stabl": 33, "stack": 37, "stalab": 32, "stand": [35, 36, 37], "standard": [3, 4, 18, 23, 24, 25, 26, 27, 28, 30, 34, 36, 37], "standardis": [23, 24, 26], "start": 35, "stasmodel": 34, "stat": [1, 22, 31, 32, 33, 34], "stat504": 33, "statement": [23, 24, 25], "static": [1, 2, 5, 6, 7, 8, 14, 15], "statist": [1, 23, 24, 31, 32, 33, 34], "statlab": [0, 5, 18, 30], "statsmodel": 34, "statu": [23, 24], "std1": 22, "std2": 22, "stdcdisc": [0, 5, 18, 30, 35], "stdiso": [0, 5, 30, 37], "stem": [23, 24], "step": [20, 23, 24, 25, 32, 35, 37], "store": 35, "str": [1, 3, 4, 5, 7, 8, 10, 12, 13, 14, 15, 16, 33, 34], "strategi": [23, 24], "strictli": 33, "string": [1, 3, 4, 5, 6, 7, 8, 12, 13, 14, 15, 16, 25, 29], "stringna": [7, 8, 33, 34], "strip": [5, 14, 15], "stripplot": 21, "strong": 33, "structur": [5, 12, 13, 15, 16, 23, 24, 26, 36], "stud": 25, "studi": [22, 23, 24, 27, 31, 32, 33, 34, 35], "stzyeg9": 21, "sub": 37, "subfolder1": 29, "subfolder2": 29, "subid": 36, "subj01": 22, "subject": [22, 23, 24], "submiss": [23, 24, 36, 37], "submit": [23, 24, 35], "subplot": [5, 14, 15], "subset_df": [3, 4], "substanc": [23, 24, 36], "substanti": 33, "subtract": 32, "subtre": 18, "successfulli": 10, "suffix": 24, "sum": 22, "sum_": [32, 33, 34], "sum_i": 31, "sum_j": [33, 34], "summar": 12, "summari": [1, 5, 12, 13, 15, 23, 24, 30, 33, 37], "summarize_1nc_by_2group": [5, 13, 15], "summary1": 22, "summary_by_group": [1, 22], "summary_label": 12, "sun": 29, "supp_ectd": [23, 24], "supplement": [23, 24, 35], "support": [20, 23, 24, 35, 36, 37], "swarm": [5, 14, 15, 18], "synops": [23, 24], "synopsi": [23, 24], "synthet": 27, "system": [3, 4, 20, 23, 24, 25, 30, 36], "t": [26, 31, 32, 36], "t1": 32, "t2": 32, "t_j": 34, "tabel": 34, "tabl": [27, 33], "tabul": [23, 24, 35], "tabular": [23, 24], "tag": [20, 23, 24], "take": [10, 19, 22], "taken": 22, "target_column": 1, "task": 33, "tau": [6, 18], "tau_1": 32, "tau_2": 32, "te": 35, "team": [19, 35], "technic": [23, 24, 25, 26, 27, 28, 35, 36], "technol": 25, "televis": [23, 24], "templat": 30, "temporari": 19, "temporarili": 19, "tend": 33, "ter": 35, "term": [3, 4, 18, 20, 21, 22, 23, 24, 28, 29, 30, 35, 36, 37], "term_categori": 26, "term_level": 26, "terminologi": [25, 26, 27, 28, 35, 36], "test": [18, 20, 23, 24, 29, 30, 33, 35, 36], "testfile3": 29, "testfolder_": 29, "testfolder_37": 29, "testfolder_nam": 29, "text": [23, 24, 35], "th": [31, 32], "thainp": 31, "than": [5, 13, 15, 23, 24, 31, 33], "thei": [19, 20], "theori": 31, "therapeut": 28, "therapi": [23, 24, 33], "therefor": 34, "thesauru": 35, "thi": [0, 3, 4, 5, 10, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37], "third": 34, "those": 25, "threaten": 19, "three": [3, 4, 33], "through": [20, 35, 36, 37], "ti": [31, 32], "time": [7, 8, 26, 32, 35], "times_": 32, "titl": [5, 7, 8, 10, 14, 15, 21, 23, 24, 30, 32, 35], "tmp0": 12, "tmp1": 12, "to_cat": [5, 13, 15], "to_csv": 25, "to_right": [2, 3, 4, 5, 12, 13, 15, 27], "toler": [23, 24], "tolist": [27, 32, 33], "tool": 30, "total": [22, 26, 33, 34, 37], "total_count": 22, "total_sum": 22, "toward": 19, "toxic": [23, 24], "toxicologi": [23, 24], "tqmp": 33, "tr": 36, "traceback": 27, "track": [23, 24], "trail": 22, "train": 37, "transfer": [23, 24], "transit": 36, "translat": 37, "transpar": 27, "travers": 12, "treatment": 22, "tree": [5, 12, 13, 15, 16, 18, 23, 24, 29, 37], "trial": [22, 23, 24, 35, 36], "troll": 19, "tropic": [23, 24], "troubleshoot": 20, "trt1": 22, "trt2": 22, "true": [3, 4, 5, 6, 10, 13, 15, 25, 26, 27, 29, 33], "tupl": [3, 4], "tutori": 33, "two": [5, 6, 7, 8, 13, 15, 25, 33, 34], "txt": [5, 15, 16, 23, 24, 29, 35], "type": [1, 3, 4, 5, 10, 12, 13, 14, 15, 16, 22, 23, 24, 29, 32, 33, 37], "typo": [23, 24], "ua": 37, "uebersax": 33, "unaccept": 19, "unapprov": [23, 24], "uncontrol": [23, 24], "under": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 35, 36, 37], "understand": [25, 26, 27, 28], "unequ": 33, "uniqu": [1, 3, 4, 5, 10, 13, 15, 27, 31], "unit": 36, "unprocess": 12, "untitl": [23, 24], "unwelcom": 19, "unzip": 25, "uom": 36, "up": [2, 20, 25, 26], "updat": [5, 14, 15, 18, 20, 23, 24, 27, 35], "update_paramet": [5, 14, 15, 21], "upper": [23, 24, 25], "url": [10, 30], "us": [5, 10, 15, 16, 19, 20, 22, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "usabl": 27, "usag": [25, 27], "user": [25, 27, 35], "userwarn": 21, "util": [0, 5, 21, 23, 24, 27, 29, 30, 35, 36], "v": 22, "v1": [23, 24, 33, 37], "v2": [33, 37], "v26": 26, "v3": 30, "v4": [23, 24], "v_": 33, "v_0": 34, "v_1": [33, 34], "v_2": [33, 34], "v_3": [33, 34], "v_4": 34, "v_j": [33, 34], "valid": [3, 4, 23, 24, 35, 37], "valu": [1, 5, 6, 7, 8, 13, 15, 21, 33, 34, 35], "value_count": [26, 27], "valueerror": [1, 5, 6, 10, 12, 13, 14, 15], "var": [32, 34], "variabl": [5, 14, 15, 21, 31, 32], "varianc": [18, 34], "variat": [33, 37], "vcd": 33, "vdot": [31, 32, 33, 34], "vector": [31, 32], "venot": 25, "versa": 25, "version": [3, 4, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 37], "version_numb": [3, 4], "version_number_u": [3, 4], "via": 19, "vice": 25, "video": 37, "view": [23, 24, 37], "viewer": 25, "viewpoint": 19, "violin": 18, "virtualenv": 21, "visit": [22, 25, 27, 35], "visit1": 22, "visit2": 22, "visit3": 22, "visit4": 22, "vitro": [23, 24], "vivo": [23, 24], "vocabulari": 35, "volum": 33, "volunt": 20, "voucher": [23, 24], "w": [28, 29], "w_": 33, "wa": [30, 35, 37], "wai": 19, "waiver": [23, 24], "want": [20, 21], "warn": [21, 23, 24, 32], "warranti": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "we": [19, 31, 32, 34], "weak": 33, "web": [20, 23, 24, 26, 27, 35, 36, 37], "webpag": [25, 28], "websit": 25, "weder": 28, "weight": 26, "welcom": [19, 20], "were": [23, 24, 27, 30, 34], "what": 19, "when": [3, 4, 19, 20, 27, 32], "where": [3, 4, 6, 31, 32, 33, 34], "whether": [3, 4, 5, 12, 13, 15], "which": [19, 23, 24, 31, 34, 35, 36, 37], "while": [30, 34, 35], "white": 35, "who": 19, "whodrug": 30, "whoever": 20, "why": [27, 37], "width": [5, 14, 15], "wiki": [19, 31, 32, 33, 34], "wikipedia": [31, 32, 33, 34], "window": 29, "wise": [32, 37], "with_count": [5, 15, 16, 29], "with_detail": [3, 4, 26], "with_file_label": [5, 15, 16], "with_soc": [3, 4, 27], "withdraw": [23, 24], "within": [19, 22, 23, 24, 32, 35], "without": [19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "word": [2, 23, 24, 35], "work": [20, 23, 24, 26, 27, 28], "workshop": 27, "worldwid": 36, "would": [20, 34], "wright": 33, "written": [23, 24], "wu": 27, "www": [33, 35], "x": [5, 6, 7, 8, 14, 15, 21, 22, 33, 37], "x_col": [5, 14, 15, 21], "x_label_rot": [5, 14, 15], "x_n": 32, "x_scale_bas": [5, 14, 15], "xevprm": 36, "xml": [18, 35], "y": [5, 6, 7, 8, 14, 15, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "y1": [7, 8, 31, 32, 33], "y2": [7, 8, 31, 32, 33], "y_": [31, 32, 33, 34], "y_col": [5, 14, 15, 21], "y_count": [33, 34], "y_count_sq": [7, 8], "y_scale_bas": [5, 14, 15, 21], "year": [3, 4, 25, 26, 27, 30, 31, 32, 33, 34, 35, 36], "yeawr": 32, "yh202109": 30, "you": [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 33, 35, 36, 37], "your": 20, "z_": 32}, "titles": ["API Reference", "mtbp3.health.clinical", "mtbp3.health.ectd", "mtbp3.health.emt", "mtbp3.health", "mtbp3", "mtbp3.statlab.corr", "mtbp3.statlab", "mtbp3.statlab.kappa", "mtbp3.stdcdisc", "mtbp3.stdcdisc.lib", "mtbp3.stdiso", "mtbp3.stdiso.pdfsummary", "mtbp3.util.cdt", "mtbp3.util.cdtg", "mtbp3.util", "mtbp3.util.lsr", "mtbp3.util.util", "Changelog", "Code of Conduct", "Contributing", "U/Graph/Categorical Plots Using catPlotter", "H/Clinical/Grouped Summary", "H/ICH/eCTD/US/3.2/Heading", "H/ICH/eCTD/US/4.0/Heading", "H/ICH/MedDRA/Basics", "H/ICH/MedDRA/SMQs by ICH", "H/ICH/MedDRA/FMQs by FDA", "H/ICH/MedDRA/(MLGs by CIOMS)", "U/System/List Folder Contents", "mtbp3", "StatLab/Corr/NP/Spearman\u2019s Rho", "StatLab/Corr/NP/Kendall\u2019s Tau", "StatLab/Reli/Cohen\u2019s Kappa", "StatLab/Reli/Fleiss\u2019s Kappa", "Std/CDISC/Library Resource", "Std/ISO/IDMP", "Std/ISO/PDF"], "titleterms": {"": [31, 32, 33, 34], "0": [24, 31, 32, 33, 34], "01": 18, "02": 18, "03": 18, "05": 18, "06": 18, "07": 18, "09": 18, "0909090909090909": 34, "1": [18, 22, 23, 24, 31, 32, 33, 34], "10": 18, "11": 18, "12": 18, "13": 18, "14": 18, "15": 18, "18": 18, "19": 18, "1960": 33, "2": [18, 23, 24, 33], "20": 18, "2012": 33, "2024": 18, "21": 18, "22": 18, "26": 18, "27": 18, "28": 18, "29": 18, "3": [18, 23, 24, 33], "30": 18, "39": 18, "4": [18, 23, 24], "42": 18, "43": 18, "48": 18, "5": [18, 23, 24], "50": 18, "6": 18, "7": 18, "7241379310344827": 33, "8": 18, "9": 18, "The": [23, 24], "access": 35, "across": 25, "algorithm": 32, "ani": 27, "api": 0, "appendix": 27, "assign": [25, 26, 27], "attribut": [2, 5, 12, 15, 17, 19], "background": [31, 32, 33, 34], "basic": 25, "bootstrap": 33, "bubbl": 33, "bug": 20, "categor": 21, "categori": 33, "catplott": 21, "cdisc": 35, "cdt": 13, "cdtg": 14, "changelog": 18, "ci": 33, "ciom": 28, "cite": 30, "class": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16], "clinic": [1, 22], "code": [19, 20], "cohen": 33, "comprehens": [23, 24], "conduct": [19, 20], "content": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 17, 23, 24, 29, 30], "contribut": [20, 30], "corr": [6, 31, 32], "count": [33, 34], "credit": 30, "ct": 35, "ctoc": [23, 24], "databas": 36, "demo": 27, "detail": [31, 34], "differ": 25, "distribut": [25, 26], "document": 20, "ectd": [2, 23, 24], "ema": 36, "emt": 3, "enforc": 19, "eu": 36, "exampl": [22, 31, 32, 33, 34], "exercis": [32, 33, 34], "extens": 33, "fda": [23, 24, 27], "featur": 20, "feedback": 20, "file": 27, "find": [23, 24, 25, 26, 27], "fix": 20, "fleiss": 34, "fmq": 27, "folder": [25, 26, 29], "foundat": 35, "function": [5, 13, 15, 17], "get": [20, 35], "given": [25, 26, 27], "graph": 21, "group": [22, 31, 32, 33, 34], "guidelin": 20, "h": [22, 23, 24, 25, 26, 27, 28], "head": [23, 24], "health": [1, 2, 3, 4], "hierarch": 25, "hierarchi": [23, 24], "how": [30, 31, 32, 33, 34], "ich": [23, 24, 25, 26, 27, 28], "idmp": 36, "implement": [20, 36], "instal": 30, "interpret": 33, "iso": [36, 37], "kappa": [8, 33, 34], "kendal": 32, "keyword": [23, 24], "lab": [32, 33, 34], "level": 25, "lib": 10, "librari": 35, "licens": 30, "list": [27, 29], "literatur": 33, "local": 27, "lsr": 16, "mchugh": 33, "meddra": [25, 26, 27, 28], "mlg": 28, "modul": [1, 2, 3, 6, 8, 10, 12, 13, 14, 16, 17, 23, 24], "more": [31, 33, 34], "mtbp3": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 30], "notat": [31, 32, 33, 34], "np": [31, 32], "observ": [31, 32], "option": [25, 29], "other": [25, 29], "our": 19, "packag": [4, 5, 7, 15, 35], "path": 27, "pdf": 37, "pdfsummari": 12, "pledg": 19, "plot": [21, 33], "project": 36, "pt": 27, "pull": 20, "rate": 34, "refer": [0, 23, 24, 25, 26, 27, 28, 31, 32, 33, 34, 35, 36, 37], "reli": [33, 34], "report": 20, "request": 20, "resourc": 35, "respons": 19, "rho": 31, "save": 27, "scope": 19, "section": [23, 24], "select": 35, "smq": 26, "spearman": 31, "standard": [19, 35], "start": 20, "statlab": [6, 7, 8, 31, 32, 33, 34], "std": [35, 36, 37], "stdcdisc": [9, 10], "stdiso": [11, 12], "submit": 20, "submodul": [4, 7, 9, 11, 15], "subpackag": 5, "suggest": 33, "summari": 22, "system": 29, "tabl": [23, 24, 30], "tau": 32, "term": [25, 26, 27], "tree": 27, "type": 20, "u": [21, 23, 24, 29], "unicom": 36, "us": [21, 23, 24], "usag": 30, "util": [13, 14, 15, 16, 17], "v0": 18, "valu": [31, 32], "version": 35, "view": 27, "weight": 33, "within": 25, "write": 20, "xevmpd": 36}})
\ No newline at end of file
+Search.setIndex({"alltitles": {"API Reference": [[0, null]], "Access CDISC Library Resource": [[35, "access-cdisc-library-resource"]], "Algorithm - 1": [[32, "algorithm-1"]], "Appendix - View PTs Given Any FMQ": [[27, "appendix-view-pts-given-any-fmq"]], "Assign FMQ File Path": [[27, "assign-fmq-file-path"]], "Assign MedDRA Distribution Folder": [[25, "assign-meddra-distribution-folder"], [26, "assign-meddra-distribution-folder"]], "Attributes": [[2, "attributes"], [5, "attributes"], [12, "attributes"], [15, "attributes"], [17, "attributes"]], "Attribution": [[19, "attribution"]], "Background": [[31, "background"], [32, "background"], [33, "background"], [34, "background"]], "Bootstrap CI": [[33, "bootstrap-ci"]], "Bubble Plot": [[33, "bubble-plot"]], "CDISC Foundational Standards": [[35, "cdisc-foundational-standards"]], "Changelog": [[18, null]], "Classes": [[1, "classes"], [2, "classes"], [3, "classes"], [4, "classes"], [5, "classes"], [6, "classes"], [7, "classes"], [8, "classes"], [10, "classes"], [12, "classes"], [13, "classes"], [14, "classes"], [15, "classes"], [16, "classes"]], "Code of Conduct": [[19, null], [20, "code-of-conduct"]], "Cohen\u2019s Kappa Interpretation (Cohen, 1960)": [[33, "id22"]], "Cohen\u2019s Kappa Interpretation (McHugh, 2012)": [[33, "id23"]], "Cohen\u2019s \\kappa = -0.7241379310344827": [[33, "id29"]], "Cohen\u2019s \\kappa = -1": [[33, "id28"]], "Cohen\u2019s \\kappa = 0": [[33, "id24"], [33, "id25"]], "Cohen\u2019s \\kappa = 1": [[33, "id26"], [33, "id27"]], "Contributing": [[20, null], [30, "contributing"]], "Count of Ratings": [[34, "tbl-count1"]], "Counts for 2 categories": [[33, "id20"]], "Counts for 3 or more categories": [[33, "id21"]], "Credits": [[30, "credits"]], "EMA Implementation of IDMP": [[36, "ema-implementation-of-idmp"]], "EU Database - xEVMPD": [[36, "eu-database-xevmpd"]], "Enforcement": [[19, "enforcement"]], "Example - Group-1": [[31, "example-group-1"], [32, "example-group-1"], [33, "example-group-1"], [34, "example-group-1"]], "Example 1": [[22, "example-1"]], "Extensions": [[33, "extensions"]], "FMQ Tree": [[27, "fmq-tree"]], "Find MedDRA Terms Across Different Hierarchical Levels": [[25, "find-meddra-terms-across-different-hierarchical-levels"]], "Find MedDRA Terms Given a SMQ": [[26, "find-meddra-terms-given-a-smq"]], "Find MedDRA Terms Within a Given Hierarchical Level": [[25, "find-meddra-terms-within-a-given-hierarchical-level"]], "Find SMQ Terms": [[26, "find-smq-terms"]], "Find Sections Using Keywords": [[23, "find-sections-using-keywords"], [24, "find-sections-using-keywords"]], "Find Terms Given a FMQ": [[27, "find-terms-given-a-fmq"]], "Fix Bugs": [[20, "fix-bugs"]], "Fleiss\u2019s \\kappa = -0.0909090909090909": [[34, "id12"]], "Fleiss\u2019s \\kappa = 1.0": [[34, "id11"]], "Functions": [[5, "functions"], [13, "functions"], [15, "functions"], [17, "functions"]], "Get CT Packages": [[35, "get-ct-packages"]], "Get Started!": [[20, "get-started"]], "H/Clinical/Grouped Summary": [[22, null]], "H/ICH/MedDRA/(MLGs by CIOMS)": [[28, null]], "H/ICH/MedDRA/Basics": [[25, null]], "H/ICH/MedDRA/FMQs by FDA": [[27, null]], "H/ICH/MedDRA/SMQs by ICH": [[26, null]], "H/ICH/eCTD/US/3.2/Heading": [[23, null]], "H/ICH/eCTD/US/4.0/Heading": [[24, null]], "How to Cite": [[30, "how-to-cite"]], "How-to": [[31, "how-to"], [32, "how-to"], [32, "id5"], [33, "how-to"], [34, "how-to"]], "Implement Features": [[20, "implement-features"]], "Installation": [[30, "installation"]], "Interpretation of Cohen\u2019s Kappa Suggested in Literature": [[33, "interpretation-of-cohen-s-kappa-suggested-in-literature"]], "Kendall\u2019s \\tau = -1.0": [[32, "id3"]], "Kendall\u2019s \\tau = 1.0": [[32, "tbl-ex1"]], "Lab Exercise": [[32, "lab-exercise"], [33, "lab-exercise"], [34, "lab-exercise"], [34, "id8"]], "License": [[30, "license"]], "Module 1": [[23, "module-1"], [24, "module-1"]], "Module 2": [[23, "module-2"], [24, "module-2"]], "Module 3": [[23, "module-3"], [24, "module-3"]], "Module 4": [[23, "module-4"], [24, "module-4"]], "Module 5": [[23, "module-5"], [24, "module-5"]], "Module Contents": [[1, "module-contents"], [2, "module-contents"], [3, "module-contents"], [6, "module-contents"], [8, "module-contents"], [10, "module-contents"], [12, "module-contents"], [13, "module-contents"], [14, "module-contents"], [16, "module-contents"], [17, "module-contents"]], "More Details": [[31, "more-details"], [34, "more-details"]], "Notation": [[31, "notation"], [32, "notation"], [33, "notation"], [34, "notation"]], "Observed Value": [[31, "tbl-count1"], [32, "tbl-count1"]], "Other Options": [[25, "other-options"], [29, "other-options"]], "Our Pledge": [[19, "our-pledge"]], "Our Responsibilities": [[19, "our-responsibilities"]], "Our Standards": [[19, "our-standards"]], "Package Contents": [[4, "package-contents"], [5, "package-contents"], [7, "package-contents"], [15, "package-contents"]], "Pull Request Guidelines": [[20, "pull-request-guidelines"]], "Reference": [[23, "reference"], [24, "reference"], [25, "reference"], [26, "reference"], [27, "reference"], [28, "reference"], [31, "reference"], [32, "reference"], [33, "reference"], [34, "reference"], [35, "reference"], [36, "reference"], [37, "reference"]], "Report Bugs": [[20, "report-bugs"]], "Resources": [[35, "resources"]], "Save Demo FMQ List to Local": [[27, "save-demo-fmq-list-to-local"]], "Scope": [[19, "scope"]], "Select CDISC Version": [[35, "select-cdisc-version"]], "Spearman\u2019s \\rho = -1.0": [[31, "id3"]], "Spearman\u2019s \\rho = 1.0": [[31, "tbl-ex1"]], "StatLab/Corr/NP/Kendall\u2019s Tau": [[32, null]], "StatLab/Corr/NP/Spearman\u2019s Rho": [[31, null]], "StatLab/Reli/Cohen\u2019s Kappa": [[33, null]], "StatLab/Reli/Fleiss\u2019s Kappa": [[34, null]], "Std/CDISC/Library Resource": [[35, null]], "Std/ISO/IDMP": [[36, null]], "Std/ISO/PDF": [[37, null]], "Submit Feedback": [[20, "submit-feedback"]], "Submodules": [[4, "submodules"], [7, "submodules"], [9, "submodules"], [11, "submodules"], [15, "submodules"]], "Subpackages": [[5, "subpackages"]], "Table of Contents": [[30, "table-of-contents"]], "The Comprehensive Table of Contents Headings and Hierarchy (CTOC) by FDA": [[23, "the-comprehensive-table-of-contents-headings-and-hierarchy-ctoc-by-fda"], [24, "the-comprehensive-table-of-contents-headings-and-hierarchy-ctoc-by-fda"]], "Types of Contributions": [[20, "types-of-contributions"]], "U/Graph/Categorical Plots Using catPlotter": [[21, null]], "U/System/List Folder Contents": [[29, null]], "UNICOM project": [[36, "unicom-project"]], "Usage": [[30, "usage"]], "Weighted \\kappa": [[33, "weighted-kappa"]], "Write Documentation": [[20, "write-documentation"]], "mtbp3": [[5, null], [30, null]], "mtbp3.health": [[4, null]], "mtbp3.health.clinical": [[1, null]], "mtbp3.health.ectd": [[2, null]], "mtbp3.health.emt": [[3, null]], "mtbp3.statlab": [[7, null]], "mtbp3.statlab.corr": [[6, null]], "mtbp3.statlab.kappa": [[8, null]], "mtbp3.stdcdisc": [[9, null]], "mtbp3.stdcdisc.lib": [[10, null]], "mtbp3.stdiso": [[11, null]], "mtbp3.stdiso.pdfsummary": [[12, null]], "mtbp3.util": [[15, null]], "mtbp3.util.cdt": [[13, null]], "mtbp3.util.cdtg": [[14, null]], "mtbp3.util.lsr": [[16, null]], "mtbp3.util.util": [[17, null]], "v0.1.10 (2024-02-07)": [[18, "v0-1-10-2024-02-07"]], "v0.1.15 (2024-02-09)": [[18, "v0-1-15-2024-02-09"]], "v0.1.18 (2024-02-12)": [[18, "v0-1-18-2024-02-12"]], "v0.1.22 (2024-02-18)": [[18, "v0-1-22-2024-02-18"]], "v0.1.3 (2024-01-12)": [[18, "v0-1-3-2024-01-12"]], "v0.1.39 (2024-02-21)": [[18, "v0-1-39-2024-02-21"]], "v0.1.4 (2024-01-28)": [[18, "v0-1-4-2024-01-28"]], "v0.1.42 (2024-02-27)": [[18, "v0-1-42-2024-02-27"]], "v0.1.43 (2024-02-29)": [[18, "v0-1-43-2024-02-29"]], "v0.1.48 (2024-03-15)": [[18, "v0-1-48-2024-03-15"]], "v0.1.5 (2024-01-30)": [[18, "v0-1-5-2024-01-30"]], "v0.1.50 (2024-03-21)": [[18, "v0-1-50-2024-03-21"]], "v0.1.6 (2024-02-05)": [[18, "v0-1-6-2024-02-05"]], "v0.1.7 (2024-02-07)": [[18, "v0-1-7-2024-02-07"]], "v0.2.11 (2024-06-18)": [[18, "v0-2-11-2024-06-18"]], "v0.2.13 (2024-07-03)": [[18, "v0-2-13-2024-07-03"]], "v0.2.14 (2024-07-07)": [[18, "v0-2-14-2024-07-07"]], "v0.2.19 (2024-07-09)": [[18, "v0-2-19-2024-07-09"]], "v0.2.2 (2024-03-28)": [[18, "v0-2-2-2024-03-28"]], "v0.2.20 (2024-07-20)": [[18, "v0-2-20-2024-07-20"]], "v0.2.21 (2024-07-26)": [[18, "v0-2-21-2024-07-26"]], "v0.2.4 (2024-05-13)": [[18, "v0-2-4-2024-05-13"]], "v0.2.8 (2024-05-13)": [[18, "v0-2-8-2024-05-13"]], "v0.2.9 (2024-06-11)": [[18, "v0-2-9-2024-06-11"]]}, "docnames": ["autoapi/index", "autoapi/mtbp3/health/clinical/index", "autoapi/mtbp3/health/ectd/index", "autoapi/mtbp3/health/emt/index", "autoapi/mtbp3/health/index", "autoapi/mtbp3/index", "autoapi/mtbp3/statlab/corr/index", "autoapi/mtbp3/statlab/index", "autoapi/mtbp3/statlab/kappa/index", "autoapi/mtbp3/stdcdisc/index", "autoapi/mtbp3/stdcdisc/lib/index", "autoapi/mtbp3/stdiso/index", "autoapi/mtbp3/stdiso/pdfsummary/index", "autoapi/mtbp3/util/cdt/index", "autoapi/mtbp3/util/cdtg/index", "autoapi/mtbp3/util/index", "autoapi/mtbp3/util/lsr/index", "autoapi/mtbp3/util/util/index", "changelog", "conduct", "contributing", "example_cdtg", "example_clinical", "example_ectd", "example_ectd2", "example_emt", "example_emt2", "example_emt3", "example_emt4", "example_files", "index", "statlab_corr_spearman_rho", "statlab_corr_tau", "statlab_kappa", "statlab_kappa2", "std_cdisc", "std_iso_idmp", "std_iso_pdf"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1}, "filenames": ["autoapi/index.rst", "autoapi/mtbp3/health/clinical/index.rst", "autoapi/mtbp3/health/ectd/index.rst", "autoapi/mtbp3/health/emt/index.rst", "autoapi/mtbp3/health/index.rst", "autoapi/mtbp3/index.rst", "autoapi/mtbp3/statlab/corr/index.rst", "autoapi/mtbp3/statlab/index.rst", "autoapi/mtbp3/statlab/kappa/index.rst", "autoapi/mtbp3/stdcdisc/index.rst", "autoapi/mtbp3/stdcdisc/lib/index.rst", "autoapi/mtbp3/stdiso/index.rst", "autoapi/mtbp3/stdiso/pdfsummary/index.rst", "autoapi/mtbp3/util/cdt/index.rst", "autoapi/mtbp3/util/cdtg/index.rst", "autoapi/mtbp3/util/index.rst", "autoapi/mtbp3/util/lsr/index.rst", "autoapi/mtbp3/util/util/index.rst", "changelog.md", "conduct.md", "contributing.md", "example_cdtg.ipynb", "example_clinical.ipynb", "example_ectd.ipynb", "example_ectd2.ipynb", "example_emt.ipynb", "example_emt2.ipynb", "example_emt3.ipynb", "example_emt4.ipynb", "example_files.ipynb", "index.md", "statlab_corr_spearman_rho.rst", "statlab_corr_tau.rst", "statlab_kappa.rst", "statlab_kappa2.rst", "std_cdisc.ipynb", "std_iso_idmp.ipynb", "std_iso_pdf.ipynb"], "indexentries": {"__calculate_cohen_kappa() (mtbp3.statlab.kappa.kappacalculator static method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.__calculate_cohen_kappa", false]], "__calculate_cohen_kappa() (mtbp3.statlab.kappacalculator static method)": [[7, "mtbp3.statlab.KappaCalculator.__calculate_cohen_kappa", false]], "__calculate_fleiss_kappa() (mtbp3.statlab.kappa.kappacalculator static method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.__calculate_fleiss_kappa", false]], "__calculate_fleiss_kappa() (mtbp3.statlab.kappacalculator static method)": [[7, "mtbp3.statlab.KappaCalculator.__calculate_fleiss_kappa", false]], "__convert_2dlist_to_string() (mtbp3.statlab.kappa.kappacalculator static method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.__convert_2dlist_to_string", false]], "__convert_2dlist_to_string() (mtbp3.statlab.kappacalculator static method)": [[7, "mtbp3.statlab.KappaCalculator.__convert_2dlist_to_string", false]], "__g() (mtbp3.statlab.corr.corrcalculator static method)": [[6, "mtbp3.statlab.corr.CorrCalculator.__g", false]], "__init__() (mtbp3.health.clinical.summary_by_group method)": [[1, "mtbp3.health.clinical.summary_by_group.__init__", false]], "__list_tree_df() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.__list_tree_df", false]], "__list_tree_df() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.__list_tree_df", false]], "__list_tree_df() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.__list_tree_df", false]], "__list_tree_pre() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.__list_tree_pre", false]], "__list_tree_pre() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.__list_tree_pre", false]], "__list_tree_pre() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.__list_tree_pre", false]], "__load_list() (mtbp3.health.ectd.ctoc_by_fda method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.__load_list", false]], "__version__ (in module mtbp3)": [[5, "mtbp3.__version__", false]], "_root (in module mtbp3)": [[5, "mtbp3._ROOT", false]], "_root (in module mtbp3.util)": [[15, "mtbp3.util._ROOT", false]], "_root (in module mtbp3.util.util)": [[17, "mtbp3.util.util._ROOT", false]], "accesslib (class in mtbp3.stdcdisc.lib)": [[10, "mtbp3.stdcdisc.lib.accessLib", false]], "all_str_digit() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.all_str_digit", false]], "all_str_digit() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.all_str_digit", false]], "assert_terms() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.assert_terms", false]], "assert_terms() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.assert_terms", false]], "baseurl (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.baseURL", false]], "bootstrap_cohen_ci() (mtbp3.statlab.kappa.kappacalculator method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.bootstrap_cohen_ci", false]], "bootstrap_cohen_ci() (mtbp3.statlab.kappacalculator method)": [[7, "mtbp3.statlab.KappaCalculator.bootstrap_cohen_ci", false]], "boxplot() (mtbp3.catplotter method)": [[5, "mtbp3.catPlotter.boxplot", false]], "boxplot() (mtbp3.util.catplotter method)": [[15, "mtbp3.util.catPlotter.boxplot", false]], "boxplot() (mtbp3.util.cdtg.catplotter method)": [[14, "mtbp3.util.cdtg.catPlotter.boxplot", false]], "calculate_kendall_tau() (mtbp3.statlab.corr.corrcalculator method)": [[6, "mtbp3.statlab.corr.CorrCalculator.calculate_kendall_tau", false]], "catplotter (class in mtbp3)": [[5, "mtbp3.catPlotter", false]], "catplotter (class in mtbp3.util)": [[15, "mtbp3.util.catPlotter", false]], "catplotter (class in mtbp3.util.cdtg)": [[14, "mtbp3.util.cdtg.catPlotter", false]], "color_output() (mtbp3.health.ectd.ctoc_by_fda static method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.color_output", false]], "corrcalculator (class in mtbp3.statlab.corr)": [[6, "mtbp3.statlab.corr.CorrCalculator", false]], "count_by_group() (mtbp3.health.clinical.summary_by_group method)": [[1, "id2", false], [1, "mtbp3.health.clinical.summary_by_group.count_by_group", false]], "count_str (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.count_str", false]], "count_str (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.count_str", false]], "count_str (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.count_str", false]], "count_to_cate() (mtbp3.health.clinical.summary_by_group method)": [[1, "id3", false], [1, "mtbp3.health.clinical.summary_by_group.count_to_cate", false]], "create_bubble_plot() (mtbp3.statlab.kappa.kappacalculator method)": [[8, "mtbp3.statlab.kappa.KappaCalculator.create_bubble_plot", false]], "create_bubble_plot() (mtbp3.statlab.kappacalculator method)": [[7, "mtbp3.statlab.KappaCalculator.create_bubble_plot", false]], "ct_list (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.ct_list", false]], "ct_list_titles (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.ct_list_titles", false]], "ct_package (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "mtbp3.stdcdisc.lib.accessLib.ct_package", false]], "ctoc (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.ctoc", false]], "ctoc_by_fda (class in mtbp3.health.ectd)": [[2, "mtbp3.health.ectd.ctoc_by_fda", false]], "ctoc_version (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.ctoc_version", false]], "demo (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.demo", false]], "df (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.df", false]], "df (mtbp3.health.clinical.summary_by_group attribute)": [[1, "id0", false], [1, "mtbp3.health.clinical.summary_by_group.df", false]], "df (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.df", false]], "df (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.df", false]], "df (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.df", false]], "df (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.df", false]], "df (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.df", false]], "diff_2cols_in_1df() (in module mtbp3)": [[5, "mtbp3.diff_2cols_in_1df", false]], "diff_2cols_in_1df() (in module mtbp3.util)": [[15, "mtbp3.util.diff_2cols_in_1df", false]], "diff_2cols_in_1df() (in module mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.diff_2cols_in_1df", false]], "diff_2cols_in_2df() (in module mtbp3)": [[5, "mtbp3.diff_2cols_in_2df", false]], "diff_2cols_in_2df() (in module mtbp3.util)": [[15, "mtbp3.util.diff_2cols_in_2df", false]], "diff_2cols_in_2df() (in module mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.diff_2cols_in_2df", false]], "ectd_version (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.ectd_version", false]], "emt (class in mtbp3.health)": [[4, "mtbp3.health.Emt", false]], "emt (class in mtbp3.health.emt)": [[3, "mtbp3.health.emt.Emt", false]], "expected_file_lists() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.expected_file_lists", false]], "expected_file_lists() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.expected_file_lists", false]], "fig_size_0 (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.fig_size_0", false]], "fig_size_0 (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.fig_size_0", false]], "fig_size_0 (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.fig_size_0", false]], "fig_size_1 (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.fig_size_1", false]], "fig_size_1 (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.fig_size_1", false]], "fig_size_1 (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.fig_size_1", false]], "files (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.files", false]], "files (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.files", false]], "find_files() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_files", false]], "find_files() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_files", false]], "find_fmq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_fmq", false]], "find_fmq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_fmq", false]], "find_fmq_file() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_fmq_file", false]], "find_fmq_file() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_fmq_file", false]], "find_hlgt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_hlgt", false]], "find_hlgt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_hlgt", false]], "find_hlt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_hlt", false]], "find_hlt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_hlt", false]], "find_llt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_llt", false]], "find_llt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_llt", false]], "find_llt_given_pt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_llt_given_pt", false]], "find_llt_given_pt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_llt_given_pt", false]], "find_llt_given_soc() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_llt_given_soc", false]], "find_llt_given_soc() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_llt_given_soc", false]], "find_pt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_pt", false]], "find_pt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_pt", false]], "find_pt_given_soc() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_pt_given_soc", false]], "find_pt_given_soc() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_pt_given_soc", false]], "find_section_given_words() (mtbp3.health.ectd.ctoc_by_fda method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.find_section_given_words", false]], "find_smq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_smq", false]], "find_smq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_smq", false]], "find_soc() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_soc", false]], "find_soc() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_soc", false]], "find_soc_given_pt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_soc_given_pt", false]], "find_soc_given_pt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_soc_given_pt", false]], "find_term_wi_level() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_term_wi_level", false]], "find_term_wi_level() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_term_wi_level", false]], "find_terms_given_fmq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_terms_given_fmq", false]], "find_terms_given_fmq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_terms_given_fmq", false]], "find_terms_given_smq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_terms_given_smq", false]], "find_terms_given_smq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_terms_given_smq", false]], "find_terms_given_smq_sub() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.find_terms_given_smq_sub", false]], "find_terms_given_smq_sub() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.find_terms_given_smq_sub", false]], "fmq_list (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.fmq_list", false]], "fmq_list (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.fmq_list", false]], "fmq_list_default (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.fmq_list_default", false]], "fmq_list_default (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.fmq_list_default", false]], "fmq_list_unique (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.fmq_list_unique", false]], "fmq_list_unique (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.fmq_list_unique", false]], "folder_name (mtbp3.health.ectd.ctoc_by_fda attribute)": [[2, "mtbp3.health.ectd.ctoc_by_fda.folder_name", false]], "folder_name (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.folder_name", false]], "folder_name (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.folder_name", false]], "generate_dataset() (mtbp3.health.clinical.summary_by_group method)": [[1, "mtbp3.health.clinical.summary_by_group.generate_dataset", false]], "generate_dataset() (mtbp3.health.clinical.summary_by_group static method)": [[1, "id1", false]], "generate_example_dataset() (mtbp3.catplotter static method)": [[5, "mtbp3.catPlotter.generate_example_dataset", false]], "generate_example_dataset() (mtbp3.util.catplotter static method)": [[15, "mtbp3.util.catPlotter.generate_example_dataset", false]], "generate_example_dataset() (mtbp3.util.cdtg.catplotter static method)": [[14, "mtbp3.util.cdtg.catPlotter.generate_example_dataset", false]], "get_ct_codelists_df() (mtbp3.stdcdisc.lib.accesslib method)": [[10, "mtbp3.stdcdisc.lib.accessLib.get_ct_codelists_df", false]], "get_ct_list() (mtbp3.stdcdisc.lib.accesslib method)": [[10, "mtbp3.stdcdisc.lib.accessLib.get_ct_list", false]], "get_ct_package() (mtbp3.stdcdisc.lib.accesslib method)": [[10, "mtbp3.stdcdisc.lib.accessLib.get_ct_package", false]], "get_data() (in module mtbp3)": [[5, "mtbp3.get_data", false]], "get_data() (in module mtbp3.util)": [[15, "mtbp3.util.get_data", false]], "get_data() (in module mtbp3.util.util)": [[17, "mtbp3.util.util.get_data", false]], "get_outline_list() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id5", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.get_outline_list", false]], "get_summary_df() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id4", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.get_summary_df", false]], "get_summary_string() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id3", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.get_summary_string", false]], "grid_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.grid_col", false]], "grid_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.grid_col", false]], "grid_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.grid_col", false]], "grid_kws (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.grid_kws", false]], "grid_kws (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.grid_kws", false]], "grid_kws (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.grid_kws", false]], "grid_wrap (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.grid_wrap", false]], "grid_wrap (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.grid_wrap", false]], "grid_wrap (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.grid_wrap", false]], "group_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.group_col", false]], "group_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.group_col", false]], "group_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.group_col", false]], "infmt (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.infmt", false]], "infmt (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.infmt", false]], "infmt (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.infmt", false]], "input_file (mtbp3.stdcdisc.lib.accesslib attribute)": [[10, "id0", false], [10, "mtbp3.stdcdisc.lib.accessLib.input_file", false]], "kappacalculator (class in mtbp3.statlab)": [[7, "mtbp3.statlab.KappaCalculator", false]], "kappacalculator (class in mtbp3.statlab.kappa)": [[8, "mtbp3.statlab.kappa.KappaCalculator", false]], "label (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.label", false]], "label (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.label", false]], "label (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.label", false]], "language (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.language", false]], "language (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.language", false]], "lineplot() (mtbp3.catplotter method)": [[5, "mtbp3.catPlotter.lineplot", false]], "lineplot() (mtbp3.util.catplotter method)": [[15, "mtbp3.util.catPlotter.lineplot", false]], "lineplot() (mtbp3.util.cdtg.catplotter method)": [[14, "mtbp3.util.cdtg.catPlotter.lineplot", false]], "list_files() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.list_files", false]], "list_files() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.list_files", false]], "list_files() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files", false]], "list_files() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files", false]], "list_files() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files", false]], "list_files_dataframe() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_dataframe", false]], "list_files_dataframe() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_dataframe", false]], "list_files_dataframe() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_dataframe", false]], "list_files_json() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_json", false]], "list_files_json() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_json", false]], "list_files_json() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_json", false]], "list_files_list() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_list", false]], "list_files_list() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_list", false]], "list_files_list() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_list", false]], "list_files_string() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_string", false]], "list_files_string() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_string", false]], "list_files_string() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_string", false]], "list_files_tree() (mtbp3.lsrtree method)": [[5, "mtbp3.LsrTree.list_files_tree", false]], "list_files_tree() (mtbp3.util.lsr.lsrtree method)": [[16, "mtbp3.util.lsr.LsrTree.list_files_tree", false]], "list_files_tree() (mtbp3.util.lsrtree method)": [[15, "mtbp3.util.LsrTree.list_files_tree", false]], "list_tree() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.list_tree", false]], "list_tree() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.list_tree", false]], "list_tree() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.list_tree", false]], "list_tree_with_keyword() (mtbp3.listtree method)": [[5, "mtbp3.ListTree.list_tree_with_keyword", false]], "list_tree_with_keyword() (mtbp3.util.cdt.listtree method)": [[13, "mtbp3.util.cdt.ListTree.list_tree_with_keyword", false]], "list_tree_with_keyword() (mtbp3.util.listtree method)": [[15, "mtbp3.util.ListTree.list_tree_with_keyword", false]], "listtree (class in mtbp3)": [[5, "mtbp3.ListTree", false]], "listtree (class in mtbp3.util)": [[15, "mtbp3.util.ListTree", false]], "listtree (class in mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.ListTree", false]], "llt (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.llt", false]], "llt (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.llt", false]], "load_fmq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_fmq", false]], "load_fmq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_fmq", false]], "load_fmq_default() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_fmq_default", false]], "load_fmq_default() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_fmq_default", false]], "load_llt() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_llt", false]], "load_llt() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_llt", false]], "load_smq() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.load_smq", false]], "load_smq() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.load_smq", false]], "lsrt (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.lsrt", false]], "lsrt (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.lsrt", false]], "lsrtree (class in mtbp3)": [[5, "mtbp3.LsrTree", false]], "lsrtree (class in mtbp3.util)": [[15, "mtbp3.util.LsrTree", false]], "lsrtree (class in mtbp3.util.lsr)": [[16, "mtbp3.util.lsr.LsrTree", false]], "lst (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.lst", false]], "lst (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.lst", false]], "lst (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.lst", false]], "mdhier (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.mdhier", false]], "mdhier (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.mdhier", false]], "meddra_release_file (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.meddra_release_file", false]], "meddra_release_file (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.meddra_release_file", false]], "module": [[1, "module-mtbp3.health.clinical", false], [2, "module-mtbp3.health.ectd", false], [3, "module-mtbp3.health.emt", false], [4, "module-mtbp3.health", false], [5, "module-mtbp3", false], [6, "module-mtbp3.statlab.corr", false], [7, "module-mtbp3.statlab", false], [8, "module-mtbp3.statlab.kappa", false], [9, "module-mtbp3.stdcdisc", false], [10, "module-mtbp3.stdcdisc.lib", false], [11, "module-mtbp3.stdiso", false], [12, "module-mtbp3.stdiso.pdfsummary", false], [13, "module-mtbp3.util.cdt", false], [14, "module-mtbp3.util.cdtg", false], [15, "module-mtbp3.util", false], [16, "module-mtbp3.util.lsr", false], [17, "module-mtbp3.util.util", false]], "month (mtbp3.health.emt attribute)": [[4, "id1", false], [4, "mtbp3.health.Emt.month", false]], "month (mtbp3.health.emt.emt attribute)": [[3, "id1", false], [3, "mtbp3.health.emt.Emt.month", false]], "mtbp3": [[5, "module-mtbp3", false]], "mtbp3.health": [[4, "module-mtbp3.health", false]], "mtbp3.health.clinical": [[1, "module-mtbp3.health.clinical", false]], "mtbp3.health.ectd": [[2, "module-mtbp3.health.ectd", false]], "mtbp3.health.emt": [[3, "module-mtbp3.health.emt", false]], "mtbp3.statlab": [[7, "module-mtbp3.statlab", false]], "mtbp3.statlab.corr": [[6, "module-mtbp3.statlab.corr", false]], "mtbp3.statlab.kappa": [[8, "module-mtbp3.statlab.kappa", false]], "mtbp3.stdcdisc": [[9, "module-mtbp3.stdcdisc", false]], "mtbp3.stdcdisc.lib": [[10, "module-mtbp3.stdcdisc.lib", false]], "mtbp3.stdiso": [[11, "module-mtbp3.stdiso", false]], "mtbp3.stdiso.pdfsummary": [[12, "module-mtbp3.stdiso.pdfsummary", false]], "mtbp3.util": [[15, "module-mtbp3.util", false]], "mtbp3.util.cdt": [[13, "module-mtbp3.util.cdt", false]], "mtbp3.util.cdtg": [[14, "module-mtbp3.util.cdtg", false]], "mtbp3.util.lsr": [[16, "module-mtbp3.util.lsr", false]], "mtbp3.util.util": [[17, "module-mtbp3.util.util", false]], "outfmt (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.outfmt", false]], "outfmt (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.outfmt", false]], "outfmt (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.outfmt", false]], "outline_list (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "id2", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.outline_list", false]], "path (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.path", false]], "path (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.path", false]], "path (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.path", false]], "pattern (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.pattern", false]], "pattern (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.pattern", false]], "pdf_path (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.pdf_path", false]], "pdfsummary (class in mtbp3.stdiso.pdfsummary)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary", false]], "pfr (in module mtbp3.stdiso.pdfsummary)": [[12, "mtbp3.stdiso.pdfsummary.pfr", false]], "plot_y_list() (mtbp3.statlab.corr.corrcalculator method)": [[6, "mtbp3.statlab.corr.CorrCalculator.plot_y_list", false]], "point_position (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.point_position", false]], "point_position (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.point_position", false]], "point_position (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.point_position", false]], "pp (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.pp", false]], "prelst (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.prelst", false]], "prelst (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.prelst", false]], "prelst (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.prelst", false]], "pt_size (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.pt_size", false]], "pt_size (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.pt_size", false]], "pt_size (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.pt_size", false]], "readme_file (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.readme_file", false]], "readme_file (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.readme_file", false]], "save_fmq_consolidated_list_csv() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.save_fmq_consolidated_list_csv", false]], "save_fmq_consolidated_list_csv() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.save_fmq_consolidated_list_csv", false]], "show_ctoc_tree() (mtbp3.health.ectd.ctoc_by_fda method)": [[2, "mtbp3.health.ectd.ctoc_by_fda.show_ctoc_tree", false]], "show_fmq_tree() (mtbp3.health.emt method)": [[4, "mtbp3.health.Emt.show_fmq_tree", false]], "show_fmq_tree() (mtbp3.health.emt.emt method)": [[3, "mtbp3.health.emt.Emt.show_fmq_tree", false]], "show_outline_tree() (mtbp3.stdiso.pdfsummary.pdfsummary method)": [[12, "id6", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.show_outline_tree", false]], "smq_content (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.smq_content", false]], "smq_content (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.smq_content", false]], "smq_list (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.smq_list", false]], "smq_list (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.smq_list", false]], "summarize_1nc_by_2group() (in module mtbp3)": [[5, "mtbp3.summarize_1nc_by_2group", false]], "summarize_1nc_by_2group() (in module mtbp3.util)": [[15, "mtbp3.util.summarize_1nc_by_2group", false]], "summarize_1nc_by_2group() (in module mtbp3.util.cdt)": [[13, "mtbp3.util.cdt.summarize_1nc_by_2group", false]], "summary (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "id0", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.summary", false]], "summary_by_group (class in mtbp3.health.clinical)": [[1, "mtbp3.health.clinical.summary_by_group", false]], "summary_label (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "id1", false], [12, "mtbp3.stdiso.pdfsummary.pdfSummary.summary_label", false]], "title (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.title", false]], "title (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.title", false]], "title (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.title", false]], "tmp0 (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.tmp0", false]], "tmp1 (mtbp3.stdiso.pdfsummary.pdfsummary attribute)": [[12, "mtbp3.stdiso.pdfsummary.pdfSummary.tmp1", false]], "tree (mtbp3.listtree attribute)": [[5, "mtbp3.ListTree.tree", false]], "tree (mtbp3.util.cdt.listtree attribute)": [[13, "mtbp3.util.cdt.ListTree.tree", false]], "tree (mtbp3.util.listtree attribute)": [[15, "mtbp3.util.ListTree.tree", false]], "update_parameters() (mtbp3.catplotter method)": [[5, "mtbp3.catPlotter.update_parameters", false]], "update_parameters() (mtbp3.util.catplotter method)": [[15, "mtbp3.util.catPlotter.update_parameters", false]], "update_parameters() (mtbp3.util.cdtg.catplotter method)": [[14, "mtbp3.util.cdtg.catPlotter.update_parameters", false]], "version_number (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.version_number", false]], "version_number (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.version_number", false]], "version_number_us (mtbp3.health.emt attribute)": [[4, "mtbp3.health.Emt.version_number_us", false]], "version_number_us (mtbp3.health.emt.emt attribute)": [[3, "mtbp3.health.emt.Emt.version_number_us", false]], "with_counts (mtbp3.lsrtree attribute)": [[5, "mtbp3.LsrTree.with_counts", false]], "with_counts (mtbp3.util.lsr.lsrtree attribute)": [[16, "mtbp3.util.lsr.LsrTree.with_counts", false]], "with_counts (mtbp3.util.lsrtree attribute)": [[15, "mtbp3.util.LsrTree.with_counts", false]], "words (in module mtbp3.health.ectd)": [[2, "mtbp3.health.ectd.words", false]], "x_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.x_col", false]], "x_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.x_col", false]], "x_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.x_col", false]], "x_label_rotate (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.x_label_rotate", false]], "x_label_rotate (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.x_label_rotate", false]], "x_label_rotate (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.x_label_rotate", false]], "x_scale_base (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.x_scale_base", false]], "x_scale_base (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.x_scale_base", false]], "x_scale_base (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.x_scale_base", false]], "y_col (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.y_col", false]], "y_col (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.y_col", false]], "y_col (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.y_col", false]], "y_scale_base (mtbp3.catplotter attribute)": [[5, "mtbp3.catPlotter.y_scale_base", false]], "y_scale_base (mtbp3.util.catplotter attribute)": [[15, "mtbp3.util.catPlotter.y_scale_base", false]], "y_scale_base (mtbp3.util.cdtg.catplotter attribute)": [[14, "mtbp3.util.cdtg.catPlotter.y_scale_base", false]], "year (mtbp3.health.emt attribute)": [[4, "id0", false], [4, "mtbp3.health.Emt.year", false]], "year (mtbp3.health.emt.emt attribute)": [[3, "id0", false], [3, "mtbp3.health.emt.Emt.year", false]]}, "objects": {"": [[5, 0, 0, "-", "mtbp3"]], "mtbp3": [[5, 1, 1, "", "ListTree"], [5, 1, 1, "", "LsrTree"], [5, 4, 1, "", "_ROOT"], [5, 4, 1, "", "__version__"], [5, 1, 1, "", "catPlotter"], [5, 5, 1, "", "diff_2cols_in_1df"], [5, 5, 1, "", "diff_2cols_in_2df"], [5, 5, 1, "", "get_data"], [4, 0, 0, "-", "health"], [7, 0, 0, "-", "statlab"], [9, 0, 0, "-", "stdcdisc"], [11, 0, 0, "-", "stdiso"], [5, 5, 1, "", "summarize_1nc_by_2group"], [15, 0, 0, "-", "util"]], "mtbp3.ListTree": [[5, 2, 1, "", "__list_tree_df"], [5, 2, 1, "", "__list_tree_pre"], [5, 3, 1, "", "df"], [5, 3, 1, "", "infmt"], [5, 3, 1, "", "label"], [5, 2, 1, "", "list_tree"], [5, 2, 1, "", "list_tree_with_keyword"], [5, 3, 1, "", "lst"], [5, 3, 1, "", "prelst"], [5, 3, 1, "", "tree"]], "mtbp3.LsrTree": [[5, 3, 1, "", "count_str"], [5, 2, 1, "", "list_files"], [5, 2, 1, "", "list_files_dataframe"], [5, 2, 1, "", "list_files_json"], [5, 2, 1, "", "list_files_list"], [5, 2, 1, "", "list_files_string"], [5, 2, 1, "", "list_files_tree"], [5, 3, 1, "", "outfmt"], [5, 3, 1, "", "path"], [5, 3, 1, "", "with_counts"]], "mtbp3.catPlotter": [[5, 2, 1, "", "boxplot"], [5, 3, 1, "", "df"], [5, 3, 1, "", "fig_size_0"], [5, 3, 1, "", "fig_size_1"], [5, 2, 1, "", "generate_example_dataset"], [5, 3, 1, "", "grid_col"], [5, 3, 1, "", "grid_kws"], [5, 3, 1, "", "grid_wrap"], [5, 3, 1, "", "group_col"], [5, 2, 1, "", "lineplot"], [5, 3, 1, "", "point_position"], [5, 3, 1, "", "pt_size"], [5, 3, 1, "", "title"], [5, 2, 1, "", "update_parameters"], [5, 3, 1, "", "x_col"], [5, 3, 1, "", "x_label_rotate"], [5, 3, 1, "", "x_scale_base"], [5, 3, 1, "", "y_col"], [5, 3, 1, "", "y_scale_base"]], "mtbp3.health": [[4, 1, 1, "", "Emt"], [1, 0, 0, "-", "clinical"], [2, 0, 0, "-", "ectd"], [3, 0, 0, "-", "emt"]], "mtbp3.health.Emt": [[4, 2, 1, "", "all_str_digit"], [4, 2, 1, "", "assert_terms"], [4, 2, 1, "", "expected_file_lists"], [4, 3, 1, "", "files"], [4, 2, 1, "", "find_files"], [4, 2, 1, "", "find_fmq"], [4, 2, 1, "", "find_fmq_file"], [4, 2, 1, "", "find_hlgt"], [4, 2, 1, "", "find_hlt"], [4, 2, 1, "", "find_llt"], [4, 2, 1, "", "find_llt_given_pt"], [4, 2, 1, "", "find_llt_given_soc"], [4, 2, 1, "", "find_pt"], [4, 2, 1, "", "find_pt_given_soc"], [4, 2, 1, "", "find_smq"], [4, 2, 1, "", "find_soc"], [4, 2, 1, "", "find_soc_given_pt"], [4, 2, 1, "", "find_term_wi_level"], [4, 2, 1, "", "find_terms_given_fmq"], [4, 2, 1, "", "find_terms_given_smq"], [4, 2, 1, "", "find_terms_given_smq_sub"], [4, 3, 1, "", "fmq_list"], [4, 3, 1, "", "fmq_list_default"], [4, 3, 1, "", "fmq_list_unique"], [4, 3, 1, "", "folder_name"], [4, 3, 1, "", "language"], [4, 2, 1, "", "list_files"], [4, 3, 1, "", "llt"], [4, 2, 1, "", "load_fmq"], [4, 2, 1, "", "load_fmq_default"], [4, 2, 1, "", "load_llt"], [4, 2, 1, "", "load_smq"], [4, 3, 1, "", "lsrt"], [4, 3, 1, "", "mdhier"], [4, 3, 1, "", "meddra_release_file"], [4, 3, 1, "id1", "month"], [4, 3, 1, "", "pattern"], [4, 3, 1, "", "readme_file"], [4, 2, 1, "", "save_fmq_consolidated_list_csv"], [4, 2, 1, "", "show_fmq_tree"], [4, 3, 1, "", "smq_content"], [4, 3, 1, "", "smq_list"], [4, 3, 1, "", "version_number"], [4, 3, 1, "", "version_number_us"], [4, 3, 1, "id0", "year"]], "mtbp3.health.clinical": [[1, 1, 1, "", "summary_by_group"]], "mtbp3.health.clinical.summary_by_group": [[1, 2, 1, "", "__init__"], [1, 2, 1, "id2", "count_by_group"], [1, 2, 1, "id3", "count_to_cate"], [1, 3, 1, "id0", "df"], [1, 2, 1, "id1", "generate_dataset"]], "mtbp3.health.ectd": [[2, 1, 1, "", "ctoc_by_fda"], [2, 4, 1, "", "words"]], "mtbp3.health.ectd.ctoc_by_fda": [[2, 2, 1, "", "__load_list"], [2, 2, 1, "", "color_output"], [2, 3, 1, "", "ctoc"], [2, 3, 1, "", "ctoc_version"], [2, 3, 1, "", "ectd_version"], [2, 2, 1, "", "find_section_given_words"], [2, 3, 1, "", "folder_name"], [2, 2, 1, "", "show_ctoc_tree"]], "mtbp3.health.emt": [[3, 1, 1, "", "Emt"]], "mtbp3.health.emt.Emt": [[3, 2, 1, "", "all_str_digit"], [3, 2, 1, "", "assert_terms"], [3, 2, 1, "", "expected_file_lists"], [3, 3, 1, "", "files"], [3, 2, 1, "", "find_files"], [3, 2, 1, "", "find_fmq"], [3, 2, 1, "", "find_fmq_file"], [3, 2, 1, "", "find_hlgt"], [3, 2, 1, "", "find_hlt"], [3, 2, 1, "", "find_llt"], [3, 2, 1, "", "find_llt_given_pt"], [3, 2, 1, "", "find_llt_given_soc"], [3, 2, 1, "", "find_pt"], [3, 2, 1, "", "find_pt_given_soc"], [3, 2, 1, "", "find_smq"], [3, 2, 1, "", "find_soc"], [3, 2, 1, "", "find_soc_given_pt"], [3, 2, 1, "", "find_term_wi_level"], [3, 2, 1, "", "find_terms_given_fmq"], [3, 2, 1, "", "find_terms_given_smq"], [3, 2, 1, "", "find_terms_given_smq_sub"], [3, 3, 1, "", "fmq_list"], [3, 3, 1, "", "fmq_list_default"], [3, 3, 1, "", "fmq_list_unique"], [3, 3, 1, "", "folder_name"], [3, 3, 1, "", "language"], [3, 2, 1, "", "list_files"], [3, 3, 1, "", "llt"], [3, 2, 1, "", "load_fmq"], [3, 2, 1, "", "load_fmq_default"], [3, 2, 1, "", "load_llt"], [3, 2, 1, "", "load_smq"], [3, 3, 1, "", "lsrt"], [3, 3, 1, "", "mdhier"], [3, 3, 1, "", "meddra_release_file"], [3, 3, 1, "id1", "month"], [3, 3, 1, "", "pattern"], [3, 3, 1, "", "readme_file"], [3, 2, 1, "", "save_fmq_consolidated_list_csv"], [3, 2, 1, "", "show_fmq_tree"], [3, 3, 1, "", "smq_content"], [3, 3, 1, "", "smq_list"], [3, 3, 1, "", "version_number"], [3, 3, 1, "", "version_number_us"], [3, 3, 1, "id0", "year"]], "mtbp3.statlab": [[7, 1, 1, "", "KappaCalculator"], [6, 0, 0, "-", "corr"], [8, 0, 0, "-", "kappa"]], "mtbp3.statlab.KappaCalculator": [[7, 2, 1, "", "__calculate_cohen_kappa"], [7, 2, 1, "", "__calculate_fleiss_kappa"], [7, 2, 1, "", "__convert_2dlist_to_string"], [7, 2, 1, "", "bootstrap_cohen_ci"], [7, 2, 1, "", "create_bubble_plot"]], "mtbp3.statlab.corr": [[6, 1, 1, "", "CorrCalculator"]], "mtbp3.statlab.corr.CorrCalculator": [[6, 2, 1, "", "__g"], [6, 2, 1, "", "calculate_kendall_tau"], [6, 2, 1, "", "plot_y_list"]], "mtbp3.statlab.kappa": [[8, 1, 1, "", "KappaCalculator"]], "mtbp3.statlab.kappa.KappaCalculator": [[8, 2, 1, "", "__calculate_cohen_kappa"], [8, 2, 1, "", "__calculate_fleiss_kappa"], [8, 2, 1, "", "__convert_2dlist_to_string"], [8, 2, 1, "", "bootstrap_cohen_ci"], [8, 2, 1, "", "create_bubble_plot"]], "mtbp3.stdcdisc": [[10, 0, 0, "-", "lib"]], "mtbp3.stdcdisc.lib": [[10, 1, 1, "", "accessLib"]], "mtbp3.stdcdisc.lib.accessLib": [[10, 3, 1, "", "baseURL"], [10, 3, 1, "", "ct_list"], [10, 3, 1, "", "ct_list_titles"], [10, 3, 1, "", "ct_package"], [10, 2, 1, "", "get_ct_codelists_df"], [10, 2, 1, "", "get_ct_list"], [10, 2, 1, "", "get_ct_package"], [10, 3, 1, "id0", "input_file"]], "mtbp3.stdiso": [[12, 0, 0, "-", "pdfsummary"]], "mtbp3.stdiso.pdfsummary": [[12, 1, 1, "", "pdfSummary"], [12, 4, 1, "", "pfr"]], "mtbp3.stdiso.pdfsummary.pdfSummary": [[12, 3, 1, "", "demo"], [12, 2, 1, "id5", "get_outline_list"], [12, 2, 1, "id4", "get_summary_df"], [12, 2, 1, "id3", "get_summary_string"], [12, 3, 1, "id2", "outline_list"], [12, 3, 1, "", "pdf_path"], [12, 3, 1, "", "pp"], [12, 2, 1, "id6", "show_outline_tree"], [12, 3, 1, "id0", "summary"], [12, 3, 1, "id1", "summary_label"], [12, 3, 1, "", "tmp0"], [12, 3, 1, "", "tmp1"]], "mtbp3.util": [[15, 1, 1, "", "ListTree"], [15, 1, 1, "", "LsrTree"], [15, 4, 1, "", "_ROOT"], [15, 1, 1, "", "catPlotter"], [13, 0, 0, "-", "cdt"], [14, 0, 0, "-", "cdtg"], [15, 5, 1, "", "diff_2cols_in_1df"], [15, 5, 1, "", "diff_2cols_in_2df"], [15, 5, 1, "", "get_data"], [16, 0, 0, "-", "lsr"], [15, 5, 1, "", "summarize_1nc_by_2group"], [17, 0, 0, "-", "util"]], "mtbp3.util.ListTree": [[15, 2, 1, "", "__list_tree_df"], [15, 2, 1, "", "__list_tree_pre"], [15, 3, 1, "", "df"], [15, 3, 1, "", "infmt"], [15, 3, 1, "", "label"], [15, 2, 1, "", "list_tree"], [15, 2, 1, "", "list_tree_with_keyword"], [15, 3, 1, "", "lst"], [15, 3, 1, "", "prelst"], [15, 3, 1, "", "tree"]], "mtbp3.util.LsrTree": [[15, 3, 1, "", "count_str"], [15, 2, 1, "", "list_files"], [15, 2, 1, "", "list_files_dataframe"], [15, 2, 1, "", "list_files_json"], [15, 2, 1, "", "list_files_list"], [15, 2, 1, "", "list_files_string"], [15, 2, 1, "", "list_files_tree"], [15, 3, 1, "", "outfmt"], [15, 3, 1, "", "path"], [15, 3, 1, "", "with_counts"]], "mtbp3.util.catPlotter": [[15, 2, 1, "", "boxplot"], [15, 3, 1, "", "df"], [15, 3, 1, "", "fig_size_0"], [15, 3, 1, "", "fig_size_1"], [15, 2, 1, "", "generate_example_dataset"], [15, 3, 1, "", "grid_col"], [15, 3, 1, "", "grid_kws"], [15, 3, 1, "", "grid_wrap"], [15, 3, 1, "", "group_col"], [15, 2, 1, "", "lineplot"], [15, 3, 1, "", "point_position"], [15, 3, 1, "", "pt_size"], [15, 3, 1, "", "title"], [15, 2, 1, "", "update_parameters"], [15, 3, 1, "", "x_col"], [15, 3, 1, "", "x_label_rotate"], [15, 3, 1, "", "x_scale_base"], [15, 3, 1, "", "y_col"], [15, 3, 1, "", "y_scale_base"]], "mtbp3.util.cdt": [[13, 1, 1, "", "ListTree"], [13, 5, 1, "", "diff_2cols_in_1df"], [13, 5, 1, "", "diff_2cols_in_2df"], [13, 5, 1, "", "summarize_1nc_by_2group"]], "mtbp3.util.cdt.ListTree": [[13, 2, 1, "", "__list_tree_df"], [13, 2, 1, "", "__list_tree_pre"], [13, 3, 1, "", "df"], [13, 3, 1, "", "infmt"], [13, 3, 1, "", "label"], [13, 2, 1, "", "list_tree"], [13, 2, 1, "", "list_tree_with_keyword"], [13, 3, 1, "", "lst"], [13, 3, 1, "", "prelst"], [13, 3, 1, "", "tree"]], "mtbp3.util.cdtg": [[14, 1, 1, "", "catPlotter"]], "mtbp3.util.cdtg.catPlotter": [[14, 2, 1, "", "boxplot"], [14, 3, 1, "", "df"], [14, 3, 1, "", "fig_size_0"], [14, 3, 1, "", "fig_size_1"], [14, 2, 1, "", "generate_example_dataset"], [14, 3, 1, "", "grid_col"], [14, 3, 1, "", "grid_kws"], [14, 3, 1, "", "grid_wrap"], [14, 3, 1, "", "group_col"], [14, 2, 1, "", "lineplot"], [14, 3, 1, "", "point_position"], [14, 3, 1, "", "pt_size"], [14, 3, 1, "", "title"], [14, 2, 1, "", "update_parameters"], [14, 3, 1, "", "x_col"], [14, 3, 1, "", "x_label_rotate"], [14, 3, 1, "", "x_scale_base"], [14, 3, 1, "", "y_col"], [14, 3, 1, "", "y_scale_base"]], "mtbp3.util.lsr": [[16, 1, 1, "", "LsrTree"]], "mtbp3.util.lsr.LsrTree": [[16, 3, 1, "", "count_str"], [16, 2, 1, "", "list_files"], [16, 2, 1, "", "list_files_dataframe"], [16, 2, 1, "", "list_files_json"], [16, 2, 1, "", "list_files_list"], [16, 2, 1, "", "list_files_string"], [16, 2, 1, "", "list_files_tree"], [16, 3, 1, "", "outfmt"], [16, 3, 1, "", "path"], [16, 3, 1, "", "with_counts"]], "mtbp3.util.util": [[17, 4, 1, "", "_ROOT"], [17, 5, 1, "", "get_data"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "attribute", "Python attribute"], "4": ["py", "data", "Python data"], "5": ["py", "function", "Python function"]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:attribute", "4": "py:data", "5": "py:function"}, "terms": {"": [3, 4, 6, 7, 8, 18, 19, 20, 23, 24, 25, 27, 28, 35], "0": [3, 4, 5, 6, 7, 8, 13, 14, 15, 22, 23, 25, 26, 27, 29, 30, 35, 37], "00": [3, 4, 37], "0006": 33, "001316446002000104": 33, "0013164481041003070": 33, "00393": 28, "00577": 33, "00_0": [3, 4], "022": 28, "03": 35, "036": 27, "03762": 37, "04": 37, "05": 33, "06513872135102527": 33, "08": 33, "09": 35, "0_ctocv1": 24, "0m": [23, 24], "1": [0, 1, 3, 4, 6, 7, 8, 12, 19, 25, 26, 27, 28, 29, 35, 36, 37], "10": [5, 14, 15, 22, 23, 24, 26, 28, 32, 33, 34, 35, 37], "100": [7, 8, 29, 32, 33, 34], "1000": [7, 8, 22, 33], "1007": 28, "1037": 34, "104": 27, "1093": 33, "11": [22, 23, 24, 31, 32, 33, 34, 35, 37], "1111": 33, "11238": 36, "11239": 36, "11240": 36, "11615": 36, "11616": 36, "11712": 27, "1177": 33, "12": [22, 23, 24, 31, 32, 33, 34, 35], "13": [22, 23, 24, 33], "14": [22, 23, 24, 34], "14289": 37, "14872": 36, "14989733059548255": 34, "15": [22, 23, 24, 25, 33, 34, 35, 37], "159": 33, "15930": 37, "16": [22, 23, 24, 35], "16791": 36, "17": [23, 24, 25, 26, 27], "1706": 37, "174": 33, "18": [22, 23, 24], "19": [23, 24, 29, 35], "19005": 37, "1971": 34, "1977": 33, "1981": 33, "19844": 36, "19908214": 25, "19926972": 25, "19986360": 25, "1_n": 32, "1j": 34, "2": [2, 6, 7, 8, 22, 25, 26, 27, 28, 29, 31, 32, 34, 35, 36, 37], "20": [12, 22, 23, 24, 27, 33, 34], "2000": [22, 33], "2004": 36, "2005": [33, 37], "2011": 37, "2012": [25, 36, 37], "2013": [25, 26, 27, 28, 37], "2014": [31, 35, 36], "2015": [25, 35], "2016": [36, 37], "2017": 36, "2019": 36, "2020": [23, 24, 25, 26, 27, 28, 36, 37], "2021": [23, 24, 37], "2022": [27, 31, 35], "2023": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "2024": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "20440": 36, "20443": 36, "20451": 36, "20982": 33, "21": [31, 32, 33, 34, 35, 37], "210": 25, "22": [31, 32, 33, 34], "2215244": 37, "2253": [23, 24], "23": [27, 29, 33, 35], "230": 26, "24": [22, 34], "24517": 37, "25": [22, 35, 36], "257": 33, "26": [25, 26, 27, 35, 36], "268": 33, "27": 35, "276": 33, "27_kappa": 34, "27s_kappa": 33, "27s_rank_correlation_coeffici": 31, "28": [22, 29], "282": 33, "29": [22, 35], "2_ctocv2": 23, "2j": 34, "2r": 34, "3": [2, 10, 21, 22, 25, 26, 27, 28, 29, 31, 32, 34, 35, 36, 37], "30": [33, 34], "31": [33, 34], "32": [33, 34], "32mdsur": [23, 24], "33": [22, 33], "34": 33, "341x": 33, "35": 33, "35mdsur": [23, 24], "35mrem": [23, 24], "36": 22, "37": [22, 33], "378": 34, "38": 22, "382": 34, "39": [26, 29, 33], "3d": 37, "3j": 34, "3r": 34, "4": [19, 22, 25, 26, 27, 28, 31, 32, 33, 34, 35, 36, 37], "40": [22, 33, 34, 36], "41": 33, "43": 37, "44": 22, "45": 33, "46": [22, 33], "48": 22, "49": 33, "496558": 33, "5": [5, 12, 14, 15, 21, 22, 25, 26, 27, 28, 31, 32, 33, 34, 35, 37], "50": [22, 33, 34], "500": 22, "510": 35, "52": [22, 35], "520": 36, "536": 36, "55": 22, "56": [33, 35], "57": [28, 35, 36], "577": 33, "582": 33, "59": 33, "6": [5, 7, 8, 14, 15, 22, 23, 24, 25, 28, 31, 32, 33, 34, 35, 36, 37], "60": [33, 34], "608": 22, "62": 22, "63": [22, 33], "64": 33, "66": 22, "687": 33, "699": 33, "69909345": 26, "69912916": 26, "69949049": 26, "6r": 34, "7": [5, 14, 15, 22, 23, 24, 33, 34, 35, 36, 37], "70": 33, "724138": 33, "726": 36, "76": 34, "776": 27, "777": 27, "778": 27, "779": 27, "79": 33, "7r": 34, "8": [22, 23, 24, 27, 33, 34, 35], "80": 33, "803": 22, "81": [22, 33, 36], "82": 33, "839": 27, "85": 33, "88293": 31, "9": [22, 23, 24, 32, 33, 34, 35], "90": 33, "907669": 33, "924": 25, "928": 25, "95": [7, 8, 33], "A": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 33, 34, 35, 36, 37], "As": [33, 35], "BE": [23, 24], "Being": 19, "By": [20, 30], "FOR": [21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 35, 36, 37], "For": [25, 26, 28, 31, 33, 34, 37], "If": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 35, 36, 37], "In": [19, 23, 24, 27, 31], "Ise": [23, 24], "It": [5, 7, 8, 10, 30], "NOT": 27, "No": 36, "Not": 37, "That": 33, "The": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 19, 20, 21, 22, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "There": [26, 27, 33], "To": [21, 22, 23, 24, 25, 26, 27, 29, 31, 32, 33, 34, 35, 37], "_": 33, "__calculate_cohen_kappa": [7, 8], "__calculate_fleiss_kappa": [7, 8], "__convert_2dlist_to_str": [7, 8], "__g": 6, "__init__": 1, "__list_tree_df": [5, 13, 15], "__list_tree_pr": [5, 13, 15], "__load_list": 2, "__version__": [5, 30], "_e": 34, "_o": 34, "_root": [5, 15, 17], "a_valid_folder_path": 27, "ab": [32, 37], "abbrevi": 35, "abid": [20, 30], "about": [10, 12, 20, 26, 35, 36, 37], "abov": [27, 33], "absorpt": [23, 24, 35], "abus": [19, 23, 24], "acceler": [23, 24, 35], "accept": [19, 26], "access": [10, 23, 24, 25, 37], "accesslib": [10, 35], "accompani": [23, 24], "account": 19, "acquisit": 35, "acrobat": 37, "act": [19, 23, 24], "actarm": [5, 13, 15], "action": [19, 37], "activ": [25, 26, 27, 28], "active_onli": [3, 4], "ad": [23, 24, 29], "adam": [23, 24, 35], "adapt": 19, "add": [18, 20, 25, 37], "addit": [5, 14, 15, 20, 27, 33], "address": [19, 23, 24], "adjust": [18, 32], "admin": 24, "administr": [23, 24, 36], "adob": 37, "adopt": 35, "advanc": [19, 24, 25, 27], "adventiti": [23, 24], "advers": [23, 24, 27, 28], "advic": [23, 24], "advisori": [23, 24], "advoc": [31, 32, 33, 34], "after": 29, "afterward": 33, "ag": 19, "agenc": [23, 24, 35], "agent": [23, 24], "agre": [20, 30, 33, 36], "agreement": [23, 33, 34], "aidc": 36, "alert": [23, 24], "algorithm": [18, 26, 27], "align": [5, 13, 15, 18, 19, 27], "all": [3, 4, 5, 18, 19, 20, 22, 23, 24, 25, 26, 27, 31, 34], "all_str_digit": [3, 4], "allow": [7, 8, 37], "almost": 33, "alon": 34, "along": [5, 12, 13, 15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "alreadi": [25, 35], "also": [25, 26, 32, 33], "altern": 33, "although": [22, 32], "alwai": 20, "amend": [23, 24], "among": 34, "an": [1, 3, 4, 5, 10, 12, 14, 15, 19, 21, 22, 23, 24, 25, 27, 29, 30, 33, 35, 37], "analys": [23, 24, 25, 26], "analysi": [23, 24, 31, 32, 33, 34, 35], "analyt": [23, 24, 27], "analyz": 35, "anda": [23, 24], "ani": [12, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 31, 32, 33, 34, 35, 36, 37], "anim": [23, 24], "annot": [23, 24], "annual": [23, 24], "anoth": [21, 23, 24, 25, 33], "antibacteri": [23, 24], "antibodi": [23, 24], "antigen": [23, 24], "antivir": [23, 24], "anyth": 20, "api": [10, 25, 35], "appear": 19, "appendic": [23, 24], "appl": 33, "appli": 19, "applic": [22, 23, 24, 33, 37], "appoint": 19, "apprais": 33, "appreci": 20, "approach": 28, "appropri": [19, 20], "approv": [23, 24, 35, 36], "approxim": [33, 34], "ar": [3, 4, 5, 7, 8, 13, 15, 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 35, 36], "architectur": 37, "archiv": [35, 37], "argument": [5, 14, 15], "arm": [5, 13, 15], "articl": [20, 28, 33, 36], "arxiv": 37, "assai": [23, 24], "assert": [3, 4], "assert_term": [3, 4], "assertionerror": [3, 4], "assess": [23, 24, 35], "assign": 31, "assist": 36, "associ": [3, 4, 23, 24], "assum": [31, 33, 34], "assumpt": [32, 33, 34], "assur": [23, 24], "attack": 19, "attent": [19, 37], "attribu": 35, "attribut": [23, 27, 35], "attributeerror": 27, "audienc": [23, 24], "audio": 37, "audit": [23, 24], "author": [23, 24, 27, 30, 31, 32, 33, 34], "auto": 0, "autoapi": 0, "automat": 36, "avail": [23, 24, 25, 27, 35], "averag": [31, 34], "ax": 6, "axi": [5, 7, 8, 14, 15, 18], "axis_label": [6, 7, 8, 32], "b": [20, 28, 32, 34], "ba": [23, 24], "background": [23, 24, 37], "bader": 28, "badg": 30, "ban": 19, "banerje": 33, "bar": 34, "base": [1, 5, 7, 8, 10, 13, 14, 15, 16, 23, 24, 26, 27, 33, 36, 37], "baseurl": 10, "basi": [23, 24], "basic": [21, 22, 26, 27, 35], "basu": 33, "batch": [23, 24, 37], "bayesian": 33, "becom": 32, "been": 35, "befor": [20, 25], "begin": 35, "behavior": [18, 19], "below": [5, 13, 15, 30, 33, 34, 35], "best": 19, "between": [5, 6, 12, 13, 15, 33], "beyond": 34, "bia": 33, "bias": 33, "bimo": [23, 24], "bin": 1, "bind": [23, 24], "binder": 18, "bioanalyt": [23, 24], "bioavail": [23, 24], "biochemia": 33, "bioequival": [23, 24], "biolog": [24, 35], "biomark": [23, 24, 35], "biomateri": [23, 24], "biometr": 33, "biopharmaceut": [23, 24], "birr": 27, "bit": 20, "bla": [23, 24], "blo": 35, "blog": 20, "bodi": [19, 23, 24], "bool": [3, 4, 5, 6, 10, 12, 13, 15], "bootstrap": [7, 8, 34], "bootstrap_cohen_ci": [7, 8, 33], "borkowski": 31, "both": [5, 13, 15, 19, 25, 32, 34], "box": [5, 14, 15, 21, 30], "boxplot": [5, 14, 15, 21], "branch": 20, "brennan": 33, "broad": 27, "brochur": [23, 24], "browser": 25, "bubbl": [7, 8, 18], "bug": 18, "bugfix": 20, "build": [30, 35], "bullet": [33, 34], "bulletin": 34, "busi": [23, 24, 35], "byte": 37, "c": [21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 33, 34, 35, 36, 37], "c139020": 35, "c142191": 35, "c156638": 35, "c179587": 35, "c201266": 35, "c201267": 35, "c42610": 35, "c67497": 35, "c71733": 35, "c80442": 35, "cad": 37, "calcul": [1, 5, 6, 7, 8, 13, 15, 31, 32, 33, 34], "calculate_kendall_tau": [6, 32], "call": 27, "calori": 22, "can": [7, 8, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "cancer": 35, "capit": 25, "captur": 36, "car": 32, "carcinogen": [23, 24], "cartesian": 32, "carton": [23, 24], "case": [3, 4, 23, 24, 25, 27, 31], "cat_plot": 21, "catalog": 35, "categor": [1, 5, 13, 14, 15, 33, 34], "categori": [21, 26, 34, 35], "catplott": [5, 14, 15], "caus": 33, "cber": 35, "cda": 18, "cdash": 35, "cdashig": 35, "cder": 35, "cdisc": [10, 30], "cdiscid": 35, "cdsic": 35, "cdt": [0, 15, 18, 30], "cdtg": [0, 15, 18, 21, 30], "cell": [23, 24, 27], "certain": 37, "certif": [23, 24], "chanc": 34, "chang": [18, 20, 23, 24, 25], "character": [23, 24], "characterist": [23, 24, 33], "charg": [23, 24], "check": [3, 4, 5, 13, 15, 20, 25, 27, 30], "checkout": 20, "child": 26, "choic": 33, "ci": 34, "circumst": 19, "cl": 35, "claim": [23, 24], "clarifi": 19, "classif": 27, "clean": [23, 24], "clinic": [0, 4, 18, 23, 24, 25, 26, 27, 28, 30, 35, 36], "clio": 27, "close": 32, "closur": [23, 24], "coa": 35, "code": [3, 4, 25, 26, 27, 28, 30, 35], "codelist": 10, "coeffici": [6, 31, 32, 33], "cohen": [7, 8, 18, 34], "cohen_kappa": 33, "cohen_kappa_scor": 33, "col": [5, 13, 15], "col1": [5, 13, 15], "col2": [5, 13, 15], "collabor": 35, "collect": [22, 35], "color": [2, 18, 23, 24], "color_output": 2, "column": [1, 5, 6, 13, 14, 15, 18, 25, 33, 34], "com": 33, "combin": [1, 5, 13, 15, 34], "comment": [19, 23, 24], "commit": [19, 20, 23, 24], "committe": [23, 24], "common": [23, 24], "commonli": [25, 26, 27, 28, 37], "commun": [19, 25, 26, 27, 28, 35, 36], "compar": [5, 13, 15, 23, 24, 33, 35], "comparison": [23, 24], "complaint": 19, "complement": 36, "complet": [27, 33], "complianc": [23, 24, 37], "compliant": 37, "compon": [24, 32], "composit": [23, 24], "comput": 33, "concentr": [23, 24], "conceptid": 35, "conclus": [23, 24, 37], "concomit": 27, "condit": [26, 27], "conduct": 30, "confid": [7, 8, 33], "confidence_level": [7, 8, 33], "confidenti": 19, "conform": [20, 35, 37], "consent": [23, 24], "consid": [3, 4, 19, 32], "consider": [33, 35], "consist": [35, 36], "consolid": 27, "consortium": 35, "constitu": 37, "construct": 19, "contact": [19, 23, 24], "contain": [0, 1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 15, 23, 24], "content": 27, "continu": [21, 31, 35], "contribut": 19, "contributor": [19, 37], "control": [23, 24, 35], "convert": [1, 3, 4, 7, 8, 10], "cookiecutt": 30, "copi": [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "copyright": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "core": 36, "corpor": [23, 24], "corr": [0, 7, 30], "corrcalcul": [6, 32], "correct": [19, 23, 24, 27], "correl": [6, 23, 24, 30, 31, 32], "correspond": [3, 4, 10, 12, 23, 24, 25, 31, 32, 34], "could": [19, 33, 34], "council": [25, 26, 27, 28], "count": [1, 7, 8, 18, 22, 26, 27, 29], "count_by_group": 1, "count_df": [7, 8], "count_sq_df": [7, 8], "count_str": [5, 15, 16], "count_to_c": [1, 22], "cov": 34, "coven": 19, "cover": [23, 24], "creat": [0, 5, 7, 8, 13, 14, 15, 19, 20, 21, 29, 30, 32, 33, 35, 37], "create_bubble_plot": [7, 8, 33], "creation": 37, "credit": 20, "crf": [23, 24], "criterion": 33, "critic": [19, 23, 24, 33], "cross": [23, 24], "csv": [3, 4, 25, 27], "ct": [10, 18], "ct_df": 35, "ct_list": [10, 35], "ct_list_titl": [10, 35], "ct_packag": [10, 35], "ctoc": 2, "ctoc_by_fda": [2, 23, 24], "ctoc_vers": [2, 24], "current": [20, 23, 24, 25, 27, 28, 30, 35, 36, 37], "cutoff": [5, 13, 15], "cvalu": 21, "cvaluegroup": 21, "d": [27, 29, 31, 32, 33], "data": [1, 5, 6, 7, 8, 14, 15, 18, 21, 22, 23, 24, 25, 27, 30, 33, 34, 35, 36, 37], "datafram": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 25, 26, 29, 31, 35], "dataset": [1, 5, 14, 15, 22, 23, 24, 35], "date": [10, 23, 24, 29, 35, 37], "ddf": 35, "ddot": [33, 34], "debar": [23, 24], "decod": 37, "deem": 19, "default": [1, 3, 4, 5, 6, 7, 8, 12, 13, 14, 15, 16, 25, 27], "deferr": [23, 24], "defin": [19, 27, 31, 33, 35], "definit": [23, 24, 26, 35], "degre": 33, "demo": 12, "demograph": [23, 24], "demonstr": [25, 26, 27], "depend": [23, 24, 30, 31, 37], "deprec": 35, "deprecationwarn": 21, "deriv": 34, "derogatori": 19, "describ": [26, 27, 28, 29, 33, 34], "descript": [23, 24, 35, 36], "descriptor": 24, "design": [1, 23, 24, 28, 29], "desir": [7, 8], "desktop": 25, "detail": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "determin": [7, 8, 19, 23, 24, 35], "develop": [20, 23, 24, 25, 26, 27, 28, 35, 36], "development": [23, 24], "deviat": [23, 24], "devic": [23, 24, 35], "df": [1, 5, 13, 14, 15, 18, 22, 25], "df1": [5, 13, 15], "df2": [5, 13, 15], "diagnost": [23, 24], "dict": [5, 10, 12, 14, 15], "dictionari": [10, 12, 25, 26, 27, 28, 36], "did": 34, "diff": [5, 13, 15], "diff_2cols_in_1df": [5, 13, 15], "diff_2cols_in_2df": [5, 13, 15], "differ": [5, 13, 15, 19, 33], "digit": [3, 4, 7, 8, 35], "dillman": 28, "dimension": [6, 7, 8], "directori": [5, 15, 16], "disabl": 19, "disagr": 33, "disclaim": [23, 24, 31, 32, 33, 34], "disclosur": [23, 24], "discontinu": [23, 24], "discours": 31, "discuss": [33, 34, 36], "diseas": [23, 24], "displai": [7, 8, 12, 23, 24], "disput": [23, 24], "dissemin": [23, 24], "distribut": [21, 22, 23, 24, 27, 28, 29, 33, 34, 35, 36, 37], "do": [19, 25], "doc": [18, 20, 23, 24, 31, 32], "docstr": 20, "document": [0, 18, 23, 24, 26, 30, 35, 37], "doe": [1, 5, 13, 15, 25, 27, 28, 31, 32, 33, 34], "doi": [28, 33, 34], "domain": 27, "done": 20, "dosag": [23, 24, 36], "dose": [23, 24], "dot": 37, "down": 27, "download": [10, 20, 25, 35], "downstream": 26, "draft": [23, 24], "drawn": 35, "driven": 20, "drop": 27, "dropout": 22, "drug": [23, 24, 35], "dsur": [2, 23, 24], "dtype": [26, 27], "duclo": 25, "duke": 27, "dump": 35, "durat": [23, 24], "dure": [27, 36], "dutta": [25, 26, 27, 28], "e": [19, 23, 24, 32, 33, 34, 37], "e3": [23, 24], "e316": [23, 24], "each": [3, 4, 6, 10, 22, 26, 33, 34], "earli": [23, 24], "easi": 33, "easier": 20, "ec": 36, "ecg": [23, 24], "ectd": [0, 4, 18, 30], "ectd_vers": [2, 24], "edg": 1, "edit": 19, "edu": [31, 33], "educ": 33, "effect": [10, 35], "effectived": 35, "efficaci": [23, 24], "effici": 35, "effort": 35, "either": [3, 4, 7, 8, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "el": 32, "electron": [19, 23, 24, 35, 36], "element": [1, 3, 4, 6, 12, 18, 31, 32, 34, 36], "elucid": [23, 24], "embed": 37, "embryofet": [23, 24], "embryon": [23, 24], "emerg": [23, 24], "empathi": 19, "empti": [1, 3, 4, 5, 10, 14, 15, 25, 29, 37], "emt": [0, 4, 18, 25, 26, 27, 28, 30], "emt2": 18, "en": [31, 32, 33, 34], "encod": 37, "encrypt": 37, "encyclopedia": 32, "encyclopediaofmath": 32, "end": 35, "enforc": [23, 24], "engag": 35, "engin": 37, "english": [25, 26, 27, 37], "enhanc": 20, "enough": 20, "enterpris": 35, "entiti": 35, "entri": 5, "environ": 19, "environment": [23, 24], "eq": [31, 32, 34], "equal": 31, "equat": 34, "equip": [23, 24], "equiv": [32, 33], "estim": [33, 34], "etc": [25, 27, 35, 36, 37], "ethnic": 19, "eua": [23, 24], "eudravigil": 36, "ev": 35, "evalu": [23, 24], "even": [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "event": [19, 23, 24, 27], "everi": 20, "everyon": 19, "everyth": 37, "evolv": 35, "exact": 25, "exactli": 33, "exampl": [1, 5, 14, 15, 16, 18, 19, 21, 25, 29, 30, 37], "excel": 35, "except": [23, 24], "exchang": 35, "excipi": [23, 24], "exclud": [23, 24], "exclus": [23, 24], "excret": [23, 24], "execut": [22, 30, 35], "exhaust": 33, "exist": [1, 5, 13, 15], "expand": [23, 24], "expect": [3, 4, 19, 33, 34], "expected_file_list": [3, 4], "experi": [19, 23, 24], "expert": 28, "explain": 20, "explicit": 19, "express": [19, 32, 34, 35], "extend": [36, 37], "extra": 25, "extrins": [23, 24], "f": 29, "face": 19, "facetgrid": [5, 14, 15], "facil": [23, 24], "factor": [23, 24, 33], "fair": [19, 33], "faith": 19, "fals": [2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 15, 16, 25, 27], "fast": [23, 24], "faster": 25, "fda": [3, 4, 35, 36, 37], "fda_ectd3": 23, "fda_ectd4": 24, "feed": 37, "feel": 20, "fertil": [23, 24], "field": [23, 24], "fig_size_0": [5, 14, 15], "fig_size_1": [5, 14, 15], "figur": [5, 14, 15], "file": [3, 4, 5, 10, 12, 15, 16, 23, 24, 25, 26, 29, 35, 37], "file1": [5, 15, 16], "file2": [5, 15, 16], "file3": [5, 15, 16], "file_path": [3, 4, 27], "file_typ": 29, "filenam": 25, "filenotfounderror": 10, "fill": 33, "filter": [3, 4], "filterwarn": 21, "fin": [3, 4], "final": [23, 24, 35], "financi": [23, 24], "find": [3, 4, 30, 33, 34], "find_fil": [3, 4, 25, 26, 27], "find_fmq": [3, 4, 27], "find_fmq_fil": [3, 4, 27], "find_hlgt": [3, 4], "find_hlt": [3, 4], "find_llt": [3, 4], "find_llt_given_pt": [3, 4, 25], "find_llt_given_soc": [3, 4, 25], "find_pt": [3, 4, 25], "find_pt_given_soc": [3, 4, 25], "find_section_given_word": [2, 23, 24], "find_smq": [3, 4, 18, 26], "find_soc": [3, 4, 25], "find_soc_given_pt": [3, 4, 25], "find_term_wi_level": [3, 4], "find_terms_given_fmq": [3, 4, 27], "find_terms_given_smq": [3, 4, 26], "find_terms_given_smq_sub": [3, 4], "first": [5, 6, 7, 8, 13, 15, 25, 27, 33, 34], "fit": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "five": 36, "fix": [18, 32, 34], "flag": [3, 4, 12], "flatten": 26, "fleiss": [7, 8, 18], "fleiss_kappa": 34, "float": [5, 6, 13, 15], "flow": 35, "fmq": [3, 4, 18], "fmq_class": 27, "fmq_class_pt": 27, "fmq_list": [3, 4, 27], "fmq_list_default": [3, 4], "fmq_list_uniqu": [3, 4], "focus": 19, "folder": [3, 4, 27], "folder_nam": [2, 3, 4, 25, 26, 27], "folder_path": [3, 4, 27], "follow": [19, 25, 32, 33, 35], "font": 37, "foreign": [23, 24], "form": [23, 24, 32, 36], "format": [5, 7, 8, 12, 15, 16, 20, 23, 24, 25, 27, 29, 35, 36, 37], "formula": [23, 24], "forward": 37, "foster": 19, "found": [5, 10, 14, 15, 18, 23, 24, 25, 26, 27, 32, 33, 37], "foundat": [21, 22, 23, 24, 25, 26, 27, 28, 29, 36, 37], "four": 36, "frac": [31, 32, 33, 34], "free": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "freq": 33, "from": [5, 6, 10, 12, 19, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 37], "fruit": 33, "ft": 35, "ftp": 35, "full": 35, "function": [18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 30, 31, 34, 35, 37], "fungi": [23, 24], "further": [19, 23, 24, 25, 26, 29], "futur": 28, "futurewarn": 21, "g": [23, 24, 32, 33], "gave": 34, "genbadg": 30, "gender": 19, "gene": [23, 24], "gener": [0, 1, 5, 14, 15, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35, 36, 37], "generate_dataset": 1, "generate_example_dataset": [5, 14, 15], "genotox": [23, 24], "geo": 30, "geq": [33, 34], "get": [3, 4, 10, 25, 27], "get_ct_codelists_df": [10, 35], "get_ct_list": [10, 18, 35], "get_ct_packag": [10, 18, 35], "get_data": [5, 15, 17], "get_outline_list": 12, "get_summary_df": 12, "get_summary_str": [12, 37], "git": 20, "github": [20, 25, 30], "given": [3, 4, 20, 21, 29, 31, 33], "glossari": 35, "gnu": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "goal": 27, "good": 19, "gov": 33, "gp": [5, 13, 15], "gracefulli": 19, "graph": 30, "greater": [31, 34], "greatli": [20, 32], "green": [23, 24], "gregori": 28, "grid": [5, 14, 15], "grid_col": [5, 14, 15], "grid_kw": [5, 14, 15], "grid_wrap": [5, 14, 15], "group": [1, 5, 13, 14, 15, 18, 21, 26, 27, 28, 30, 35], "group_col": [5, 14, 15, 21], "group_col0": [5, 13, 15], "group_col1": [5, 13, 15], "group_column": 1, "grouped_df": 1, "gro\u00dfe": 28, "guarante": [23, 24], "guid": [23, 24, 35], "guidanc": [23, 24, 35, 36], "guidelin": 30, "h": 32, "h0031619": 34, "ha": [23, 24, 26, 27, 31, 33, 35], "hallgren": 33, "harass": 19, "hardwar": 37, "harm": 19, "harmon": [35, 36], "harmonis": [25, 26, 27, 28], "hat": 33, "have": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 33, 34, 35, 36, 37], "head": [22, 35, 37], "health": [0, 5, 22, 23, 24, 25, 26, 27, 30, 36], "healthcar": [23, 24], "healthi": [23, 24], "height": [5, 14, 15], "help": [20, 23, 24], "hepat": [23, 24], "here": [20, 26, 27, 30, 35, 37], "hf": [23, 24], "hier": 18, "hierarch": [12, 26], "hierarchi": [3, 4], "high": [22, 33], "higher": [33, 35], "hist": [7, 8, 18, 33], "histori": [23, 24, 27], "hlgt": [3, 4, 25], "hlt": [3, 4, 25], "holder": 28, "home": [23, 24, 35], "homepag": 19, "hope": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "horizont": 21, "host": 27, "how": 20, "hsu": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "htm": 33, "html": [30, 31, 32, 35], "http": [10, 28, 30, 31, 32, 33, 34, 35, 37], "human": [23, 24, 25, 26, 27, 28, 36], "hypothesi": 34, "i": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37], "i0": 34, "i1": [31, 32, 34], "i2": [31, 32, 34], "ich": 30, "id": [3, 4, 23, 24, 25, 26], "id_studi": 24, "ident": 19, "identif": [23, 36], "identifi": [23, 36], "iec": [23, 24], "ig": 35, "ignor": [3, 4, 21], "ignore_cas": [3, 4, 18, 25, 27], "ij": [32, 34], "ij1": 32, "ij2": 32, "ik": 34, "illustr": [32, 37], "imag": [23, 24, 37], "imageri": 19, "img": 30, "immun": [23, 24], "immunotox": [23, 24], "impact": 33, "implement": [23, 24, 27, 32, 35], "impli": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "import": [5, 18, 21, 22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 37], "improv": [27, 28, 35, 36], "impur": [23, 24], "inactiv": [23, 24], "inappropri": 19, "incid": 19, "includ": [2, 3, 4, 10, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 33, 34, 35, 36, 37], "inclus": 19, "incorpor": [23, 24], "increas": 32, "ind": [23, 24], "indent": 18, "independ": [32, 33, 34], "index": [25, 30, 32], "indic": [3, 4, 5, 6, 12, 13, 15, 23, 24, 33, 35], "individu": [19, 23, 24, 33, 37], "infer": 33, "infmt": [5, 7, 8, 13, 15], "inform": [10, 12, 19, 23, 24, 25, 26, 29, 35, 36], "informat": 36, "initi": [1, 23, 24, 30, 35], "innov": 28, "input": [1, 3, 4, 5, 6, 7, 8, 10, 13, 14, 15, 25], "input_fil": 10, "insert": [23, 24], "insign": 35, "instal": [20, 27], "instanc": [3, 4, 5, 14, 15, 19], "institut": [27, 35], "instruct": [30, 35], "insult": 19, "int": [1, 3, 4, 5, 7, 8, 12, 14, 15], "int64": [26, 27], "integ": [1, 12], "integr": [23, 24], "intend": [31, 32, 33, 34], "intent": [23, 24], "inter": [23, 24, 33, 34], "inter_rat": 34, "interact": [3, 4, 18, 23, 24, 27], "interchan": 35, "interchang": 35, "interest": [19, 26, 27, 30], "interim": [23, 24], "intermedi": [23, 24], "intern": [25, 26, 27, 28, 36, 37], "internation": 36, "interrat": 33, "interv": [7, 8, 33], "intra": 33, "intrins": [23, 24], "introduct": [23, 24, 28, 31, 36, 37], "invalid": [1, 5, 14, 15], "investig": [19, 23, 24, 36], "involv": 27, "io": 30, "ir": 34, "irb": [23, 24], "iso": 30, "iss": [23, 24], "issu": [19, 20, 23, 24, 33], "item": [5, 13, 15, 35], "iter": [7, 8, 12], "its": [19, 20, 30], "j": [32, 33, 34, 37], "j1": 32, "j2": 32, "j_1": 33, "j_2": 33, "jasonpott": 25, "jb": 25, "jj": 33, "jmp": 26, "jobo": 31, "john": [31, 33], "join": [23, 24, 27], "json": [5, 15, 16, 35], "jul": 29, "julia": 31, "julialang": 31, "justif": [23, 24], "juvenil": [23, 24], "k": [32, 33, 34, 35], "kappa": [0, 7, 18, 30], "kappacalcul": [7, 8, 33, 34], "keep": [20, 26], "keep_column": [3, 4], "keep_diff_onli": [5, 13, 15], "kei": [10, 12, 35], "kendal": [6, 18], "kendall_rank_correlation_coeffici": 32, "kendall_tau_metr": 32, "kendalltau": 32, "keyword": [5, 13, 14, 15], "know": [32, 37], "koch": 33, "kwarg": [5, 14, 15], "l": [28, 33, 34], "lab": 27, "label": [5, 6, 7, 8, 12, 13, 15, 23, 24, 28, 35], "label_str": [5, 15, 16], "laboratori": [23, 24], "lami": 25, "landi": 33, "languag": [3, 4, 19, 25, 26, 27], "larg": 34, "last": 27, "later": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "launch": [23, 24], "ldot": [31, 32, 33, 34], "leadership": 19, "least": [6, 26], "left": [32, 34, 37], "legaci": [23, 24], "legisl": 36, "length": [3, 4, 32], "leq": 33, "less": [5, 13, 15, 31, 32], "lesson": 33, "let": [31, 32, 33, 34], "letter": [23, 24, 25, 35], "level": [3, 4, 7, 8, 19, 26, 29, 33, 35, 37], "liabil": [23, 24], "lib": [0, 9, 18, 30, 35], "librari": 10, "licens": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "life": [23, 24], "limit": 34, "line": [5, 14, 15, 21, 23, 24, 27, 33], "lineplot": [5, 14, 15, 21], "link": [23, 24, 30], "linux": 29, "list": [1, 3, 4, 5, 6, 7, 8, 12, 13, 15, 16, 23, 24, 25, 26, 33, 35], "list0": 27, "list1": 27, "list2": 27, "list_fil": [3, 4, 5, 15, 16, 29], "list_files_datafram": [5, 15, 16], "list_files_json": [5, 15, 16], "list_files_list": [5, 15, 16], "list_files_str": [5, 15, 16], "list_files_tre": [5, 15, 16], "list_tre": [5, 13, 15, 27], "list_tree_with_keyword": [5, 13, 15], "listtre": [5, 13, 15, 27], "literatur": [23, 24], "littl": 20, "llt": [3, 4, 25, 26], "llt_by_soc": 18, "llt_current_onli": [3, 4], "llt_onli": [3, 4], "load": 37, "load_fmq": [3, 4], "load_fmq_default": [3, 4], "load_llt": [3, 4], "load_smq": [3, 4], "loc": 6, "local": [20, 23, 24], "log": [23, 24], "long": [23, 24, 37], "longer": 23, "look": 20, "low": [22, 33], "lowercas": 25, "lowest": [3, 4], "lsr": [0, 5, 15, 18, 27, 29, 30], "lsrt": [3, 4], "lsrtree": [3, 4, 5, 15, 16, 29], "lst": [3, 4, 5, 13, 15, 27], "m": [28, 33], "mac": 29, "macdonald": 28, "machin": 37, "magenta": [23, 24], "mai": [19, 22, 25, 26, 27], "mail": 19, "main": 35, "maintain": [19, 25, 26, 27, 28, 35, 36, 37], "mainten": 36, "make": [19, 20, 27], "manag": [23, 24], "mandat": 36, "mandatori": 36, "mani": 34, "manufactur": [23, 24], "map": 12, "march": 25, "margin": 33, "margoli": 27, "market": [23, 24], "materi": [23, 24], "matern": [23, 24], "math": 31, "mathcal": 31, "mathemat": 32, "matrix": [7, 8, 32], "max_itr": 12, "max_level": 10, "max_size_ratio": [7, 8], "maximum": [7, 8, 12, 32], "mdhier": [3, 4], "meal": 22, "meant": 35, "measur": [23, 24, 31, 32, 33, 34, 36], "mechan": 35, "mechanist": [23, 24], "meddra": [3, 4, 30], "meddra_release_fil": [3, 4], "meddra_vers": 26, "media": 19, "median": 22, "medic": [3, 4, 23, 24, 25, 26, 27, 28, 35], "medica": 33, "medicin": [24, 35, 36], "medium": [23, 24], "meet": [20, 23, 24], "member": 19, "menu": 27, "merchant": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "merg": 35, "messag": 36, "metabol": [23, 24], "metabolit": [23, 24], "metadata": 37, "method": [3, 4, 5, 6, 7, 8, 10, 14, 15, 18, 23, 24, 31, 32, 33, 34], "methodologi": [23, 24, 28], "metric": [32, 33], "mgf": 34, "micha": 28, "microbiolog": [23, 24], "microbiologi": [23, 24], "might": [20, 33, 35], "migrat": 36, "minim": 33, "minimum": 32, "miss": [3, 4, 6, 7, 8, 23, 24], "misus": 33, "mitig": [23, 24], "mkdir": 29, "model": [33, 35, 37], "moder": 33, "modif": [23, 24, 37], "modifi": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "modul": [5, 18, 21, 22, 25, 26, 27, 28, 29, 35, 37], "monitor": [22, 23, 24, 33, 36], "montana": 31, "month": [3, 4, 25, 26, 27], "more": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "most": [25, 27], "mpid": 36, "mrct": 35, "msso": 25, "mtbp3": [0, 20, 21, 22, 23, 24, 25, 26, 27, 29, 32, 33, 34, 35, 37], "much": 33, "multi": [22, 33, 34, 35, 37], "multinomi": 33, "multipl": [23, 24, 25, 33, 34, 35], "must": [6, 35], "my": 30, "mycobacteria": [23, 24], "n": [22, 23, 24, 26, 27, 31, 32, 33, 34], "n1": [31, 32, 34], "n2": [31, 32, 34], "n_": [32, 33, 34], "n_0": 34, "n_categori": [33, 34], "n_column": 29, "n_iter": [7, 8, 33], "n_page": 29, "n_rater": [33, 34], "n_row": 29, "n_soc": [25, 26, 27], "na": [6, 18, 33, 34], "name": [3, 4, 5, 13, 14, 15, 20, 23, 24, 25, 26, 27, 29, 35, 37], "nan": [5, 13, 15, 25], "narrow": [20, 27], "narrow_onli": [3, 4, 27], "nation": [19, 35], "ncbi": 33, "nci": 35, "ncit": 35, "nda": [23, 24], "ndarrai": 1, "necessari": [25, 26, 35], "need": [33, 35, 37], "neighbor": [5, 13, 15], "neither": [3, 4], "neq": 34, "network": 37, "never": 20, "new": [23, 24, 35], "newest": [10, 23, 24, 35], "nih": 33, "nj": 34, "nlm": 33, "nomenclatur": 23, "nomin": [33, 34], "non": [1, 23, 24, 25, 37], "nonclin": [22, 23, 24, 35], "none": [2, 3, 4, 5, 7, 8, 12, 13, 14, 15, 18, 21, 22, 29, 33], "nor": [3, 4], "normal": 34, "note": [20, 22, 23, 24, 25, 26, 27, 30, 32, 33, 34, 35], "notebook": 27, "notif": [23, 24, 35], "notifi": [23, 24], "novel": [23, 24], "np": 33, "nr": 34, "number": [5, 6, 7, 8, 12, 14, 15, 22, 23, 25, 31, 32, 33, 34, 37], "numer": [1, 5, 13, 15], "numpi": [1, 32], "nutshel": 37, "o": [24, 29, 34], "object": [3, 4, 5, 12, 13, 15, 37], "oblig": [19, 23, 24], "observ": [33, 34], "obtain": 12, "occurr": 1, "odm": 35, "offens": 19, "offici": [19, 20], "offlin": 19, "offspr": [23, 24], "one": [3, 4, 23, 24, 26, 31, 32, 33], "onli": [3, 4, 25, 26, 31, 32, 33, 34], "onlin": [19, 25, 33, 35], "open": [19, 20, 25, 29, 37], "oper": 20, "optim": 37, "option": [1, 3, 4, 5, 6, 12, 14, 15, 18, 26, 31, 35], "orang": 33, "order": [18, 31], "org": [10, 28, 31, 32, 33, 34, 35, 37], "organ": [3, 4, 23, 24, 25, 28, 35, 36, 37], "organis": 36, "orient": 19, "origin": [23, 24], "orphan": [23, 24], "other": [19, 22, 23, 24, 26, 32, 33], "otherwis": [3, 4, 5, 10, 13, 15, 19], "our": 37, "out": [2, 26, 30, 33], "out1": 1, "out_digit": [7, 8, 33], "out_fold": 10, "out_path": [7, 8], "outcom": [23, 24, 33, 34, 35], "outfmt": [2, 5, 7, 8, 13, 15, 16, 18, 23, 24, 29], "outlin": [12, 18, 37], "outline_list": 12, "output": [5, 7, 8, 15, 16, 18, 25, 26, 27, 33, 34, 35], "outstand": [23, 24], "overal": [23, 24, 34], "overview": [23, 24, 33, 36], "owl": 35, "ownership": [23, 24], "p": [23, 24, 31, 34], "p023": 33, "p2": 34, "p21": 35, "p3": 34, "p4": 34, "p_": [33, 34], "p_1": 34, "p_e": 33, "p_j": 34, "p_je": 34, "p_k": 34, "p_o": 33, "p_valu": [31, 32], "packag": [10, 18, 23, 24, 30, 33, 37], "package_info": 35, "pad": [5, 13, 15], "page": [0, 18, 23, 24, 26, 27, 31, 32, 33, 34, 35, 36, 37], "pair": [31, 32], "panda": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 31], "paper": [27, 35], "parallel": 22, "paramet": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15], "parasit": [23, 24], "pars": 37, "part": [20, 35, 37], "particip": 19, "particular": [21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "pass": [20, 29], "patent": [23, 24], "path": [3, 4, 5, 7, 8, 10, 12, 13, 15, 16, 17, 25, 29, 37], "pathogen": [23, 24], "patient": [23, 24, 27], "pattern": [3, 4], "pd": [5, 15, 16, 23, 24], "pdf": [12, 18, 23, 24, 25, 26, 27, 28, 31, 35, 36], "pdf_path": 12, "pdfa": 37, "pdfreader": 12, "pdfsummari": [0, 11, 18, 30, 37], "pear": 33, "pediatr": [23, 24], "per": [22, 33, 34], "percentag": [5, 13, 15, 33], "perfect": 33, "perform": 1, "period": [23, 24], "perman": 19, "permiss": 19, "person": [19, 23, 24], "pertin": [23, 24], "pfr": [12, 37], "pharmaceut": [23, 24, 25, 26, 27, 28, 36], "pharmacodynam": [23, 24], "pharmacogenom": [23, 24], "pharmacokinet": [23, 24], "pharmacologi": [23, 24], "pharmasug": 27, "phase": 36, "php": 32, "phpid": 36, "physic": [19, 33], "pip": 30, "pivot": [5, 13, 15], "pk": [23, 24], "pkg": 30, "pkg_seri": 10, "pkgseri": 35, "place": 28, "plan": [22, 23, 24, 35, 36], "plasma": [23, 24], "pleas": [20, 23, 24, 25, 26, 27, 30, 33, 34, 35], "plot": [5, 6, 7, 8, 14, 15, 18, 32], "plot_y_list": [6, 32], "pmc": 33, "pmc3900052": 33, "pmf": 31, "pmn": 35, "poetri": 20, "point": [5, 13, 14, 15], "point_posit": [5, 14, 15], "polici": [19, 27], "polit": 19, "popul": [23, 24], "portabl": 37, "portion": 33, "posit": [19, 37], "possibl": 20, "post": [19, 20, 22, 23, 24, 36], "postapprov": [23, 24], "postmarket": [23, 24], "postnat": [23, 24], "pp": 12, "practic": [31, 32, 33, 34], "pre": [23, 24], "predig": 33, "prefer": [3, 4], "preferredterm": 35, "prelst": [5, 13, 15], "premarket": [27, 35], "prenat": [23, 24], "prepar": [29, 35], "preselect": 33, "present": 29, "presubmiss": [23, 24], "preval": 33, "preview": [18, 23, 24], "previous": [23, 24], "primari": [3, 4, 23, 24, 25], "primary_onli": [3, 4], "primary_soc_onli": [3, 4, 25], "principl": [28, 36], "print": [22, 23, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 35, 37], "prioriti": [23, 24], "privat": 19, "pro": 37, "probabl": 34, "problem": 33, "proc": 33, "procedur": [23, 24], "process": [21, 22, 23, 24, 25, 26, 29, 33, 35], "processor": 37, "procon": 33, "product": [23, 24, 28, 32, 35, 36, 37], "proestel": 28, "profession": 19, "profil": [23, 24], "program": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "programm": 36, "project": [19, 20, 27, 30], "promis": 27, "promot": [23, 24, 31, 32, 33, 34], "proper": [24, 37], "properti": 23, "propos": [20, 23, 24], "proprietari": [23, 24], "protein": [23, 24], "protocol": [23, 24, 35], "provid": [3, 4, 5, 7, 8, 14, 15, 23, 24, 25, 27, 30, 31, 32, 33, 34], "provis": 36, "pseudo": 23, "psu": 33, "psycholog": [33, 34], "psychologi": 33, "pt": [3, 4, 25, 26], "pt_df": 27, "pt_list": 27, "pt_size": [5, 14, 15], "ptj": 33, "public": [19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "publish": [3, 4, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "purpos": [21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 35, 36, 37], "put": 33, "py": [27, 30], "pymedtermino": 25, "pypdf": 37, "pypi": 30, "python": [20, 25, 27, 30], "q": 35, "qr": 35, "qualif": 35, "qualiti": [23, 24], "quantifi": 33, "quantit": 33, "queri": [3, 4, 26, 27], "questionnair": 35, "quick": [23, 24], "r": [23, 24, 25, 28, 31, 33, 34], "r1": [33, 34], "r2": [33, 34], "r3": 34, "r4": 34, "r5": 34, "r_": 31, "race": 19, "rais": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15], "randint": [29, 32], "random": [29, 31, 32, 33], "random_numb": 29, "randomis": [23, 24], "randomli": [25, 34], "rank": [31, 32], "rankstat": 31, "rao": 28, "rate": [7, 8, 33, 35], "rater": [7, 8, 33, 34], "ratio": [7, 8], "ratter": 33, "raw": 33, "rdf": 35, "re": 20, "reach": 35, "reaction": 28, "reactiv": [23, 24], "readi": 20, "readme_fil": [3, 4], "real": 27, "reason": [19, 27], "receiv": [21, 22, 23, 24, 25, 26, 27, 28, 29, 33, 35, 36, 37], "recent": 27, "record": [22, 25, 26, 27, 28, 35], "red": 2, "redistribut": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "reduc": 25, "referenc": [23, 24], "referenti": 36, "regard": [19, 23, 24], "regardless": 19, "regen": 24, "region": [23, 24, 35], "registrationstatu": 35, "regul": 36, "regular": 37, "regulatori": [23, 24, 25, 26, 27, 28, 35, 36, 37], "reinstat": [23, 24], "reissuanc": [23, 24], "reject": [19, 23, 24], "rel": 25, "relat": [3, 4, 23, 24, 25, 26, 27, 36], "relationship": [23, 24, 26, 28, 33], "releas": [20, 23, 24, 30], "reliabl": [30, 33, 34], "religion": 19, "rem": [2, 23, 24], "remain": 25, "rememb": 20, "remov": [3, 4, 6, 19, 29], "remove_na": 6, "remove_non": [3, 4], "repeat": [23, 24], "repercuss": 19, "replac": [25, 32], "report": [19, 22, 23, 24, 25, 26, 27, 28, 35, 36], "repositori": 25, "repres": [3, 4, 5, 7, 8, 12, 13, 15, 16, 19, 22, 32, 33, 34, 37], "represent": [7, 8, 12, 19], "reproduc": 20, "reproduct": [23, 24], "request": [10, 23, 24], "requir": [20, 23, 24, 25, 26, 27, 28, 33, 35, 36, 37], "research": [23, 24], "resolut": [23, 24], "resourc": 36, "respect": 19, "respond": 19, "respons": [23, 24, 25, 33], "rest": [33, 34], "result": [1, 3, 4, 5, 7, 8, 15, 16, 22, 23, 24, 25, 33, 37], "retriev": [10, 30], "return": [1, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 25, 26, 27, 29], "reverse_i": [7, 8, 33], "review": [19, 23, 24], "revis": [36, 37], "revoc": [23, 24], "right": [5, 12, 13, 15, 18, 19, 23, 24, 27, 32, 34], "risk": [23, 24], "rmat": 24, "rmtree": 29, "roll": [23, 24], "roughli": 33, "round": [7, 8], "rout": [23, 24, 36], "row": [3, 4, 6, 33, 34], "rp_j": 34, "rule": [23, 24, 35], "runner": [23, 24], "s43441": 28, "s_": [31, 34], "s_1": 31, "s_2": 31, "sa": 33, "safeti": [23, 24, 25, 26, 27, 28], "sai": 35, "same": [5, 13, 15, 22, 33, 34], "sampl": [18, 23, 24, 31, 32, 33, 34, 35], "sample_df": [7, 8], "sample_list": [7, 8], "save": [3, 4, 7, 8, 25, 35], "save_fmq_consolidated_list_csv": [3, 4, 27], "scale": [5, 14, 15, 33, 34, 35, 37], "scatter": [6, 32], "scenario": [32, 33], "schedul": 37, "scheme": [23, 24], "scienc": 28, "scipi": [31, 32], "scope": [20, 27], "sdtm": [23, 24, 35], "sdtmig": 35, "se": 33, "search": [5, 13, 15, 18, 23, 24], "second": [5, 7, 8, 13, 15, 33, 34], "secondari": [23, 24], "section": [25, 26, 32], "see": [21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 34, 35, 36, 37], "seed": 33, "select": [27, 34], "self": [1, 10, 27, 37], "sen": 33, "send": [10, 23, 24, 35], "sendig": 35, "sens": 27, "sensit": [3, 4, 23, 24], "sep": 26, "separ": 19, "septemb": [25, 26, 27], "sequenc": 1, "seri": 10, "servic": [25, 35], "set": [10, 19, 20, 24, 25, 26, 27, 28, 33, 35], "setup": 20, "sever": 33, "sexual": 19, "shall": 33, "shape": [33, 34], "share": [23, 24, 25, 27, 33], "shield": 30, "ship": [25, 27], "short": [23, 24], "should": [3, 4, 12, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "show": [5, 13, 15, 18, 19, 30, 32, 35], "show_ctoc_tre": [2, 23, 24], "show_fmq_tre": [3, 4, 27], "show_outline_tre": [12, 37], "shutil": 29, "sign": [32, 35], "signatur": [23, 24], "signific": [23, 24], "sim": [31, 33, 34], "similar": [20, 25], "simpl": [2, 5, 13, 15], "simpli": 25, "simplifi": [27, 31, 33], "simul": 27, "singl": [23, 24, 31, 33], "site": [23, 24], "size": [5, 7, 8, 14, 15, 19, 27, 29, 31, 32, 33, 37], "size_in_byt": 29, "sklearn": 33, "slight": 33, "small": 32, "smari": 30, "smq": [3, 4, 18, 28], "smq916fxwgunhqihpu": 26, "smq_algorithm": 26, "smq_content": [3, 4], "smq_descript": 26, "smq_description657tlcpxpwehstw": 26, "smq_id": 26, "smq_level": 26, "smq_list": [3, 4], "smq_name": 26, "smq_note": 26, "smq_note619xvqsmalebtohgxntmzpjq": 26, "smq_sourc": 26, "smq_source174ddcfdqhebxrmoojigrqawetdkqjd": 26, "smq_statu": 26, "soc": [3, 4, 18, 25, 27], "soc_nam": [3, 4, 25], "social": 19, "softmax": 37, "softwar": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37], "some": [25, 33, 35, 37], "sometim": 33, "sourc": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 17, 25, 27, 35, 37], "space": [5, 13, 15, 19], "spatial": 30, "spearmanr": 31, "speci": [23, 24], "special": [23, 24, 27, 37], "specialti": [23, 24], "specif": [3, 4, 19, 23, 24, 26, 36, 37], "specifi": [1, 3, 4, 5, 10, 15, 16, 23, 24, 25, 37], "sphinx": 0, "sponsor": [23, 24], "spor": 36, "sqrt": [32, 33], "stabil": [23, 24], "stabl": 33, "stack": 37, "stalab": 32, "stand": [35, 36, 37], "standard": [3, 4, 18, 23, 24, 25, 26, 27, 28, 30, 34, 36, 37], "standardis": [23, 24, 26], "start": 35, "stasmodel": 34, "stat": [1, 22, 31, 32, 33, 34], "stat504": 33, "statement": [23, 24, 25], "static": [1, 2, 5, 6, 7, 8, 14, 15], "statist": [1, 23, 24, 31, 32, 33, 34], "statlab": [0, 5, 18, 30], "statsmodel": 34, "statu": [23, 24], "std1": 22, "std2": 22, "stdcdisc": [0, 5, 18, 30, 35], "stdiso": [0, 5, 30, 37], "stem": [23, 24], "step": [20, 23, 24, 25, 32, 35, 37], "store": 35, "str": [1, 3, 4, 5, 7, 8, 10, 12, 13, 14, 15, 16, 33, 34], "strategi": [23, 24], "strictli": 33, "string": [1, 3, 4, 5, 6, 7, 8, 12, 13, 14, 15, 16, 25, 29], "stringna": [7, 8, 33, 34], "strip": [5, 14, 15], "strong": 33, "structur": [5, 12, 13, 15, 16, 23, 24, 26, 36], "stud": 25, "studi": [22, 23, 24, 27, 31, 32, 33, 34, 35], "sub": 37, "subfolder1": 29, "subfolder2": 29, "subid": 36, "subj01": 22, "subject": [22, 23, 24], "submiss": [23, 24, 36, 37], "submit": [23, 24, 35], "subplot": [5, 14, 15], "subset_df": [3, 4], "substanc": [23, 24, 36], "substanti": 33, "subtract": 32, "subtre": 18, "successfulli": 10, "suffix": 24, "sum": 22, "sum_": [32, 33, 34], "sum_i": 31, "sum_j": [33, 34], "summar": 12, "summari": [1, 5, 12, 13, 15, 23, 24, 30, 33, 37], "summarize_1nc_by_2group": [5, 13, 15], "summary1": 22, "summary_by_group": [1, 22], "summary_label": 12, "sun": 29, "supp_ectd": [23, 24], "supplement": [23, 24, 35], "support": [20, 23, 24, 35, 36, 37], "swarm": [5, 14, 15, 18], "synops": [23, 24], "synopsi": [23, 24], "synthet": 27, "system": [3, 4, 20, 23, 24, 25, 30, 36], "t": [26, 31, 32, 36], "t1": 32, "t2": 32, "t_j": 34, "tabel": 34, "tabl": [27, 33], "tabul": [23, 24, 35], "tabular": [23, 24], "tag": [20, 23, 24], "take": [10, 19, 22], "taken": 22, "target_column": 1, "task": 33, "tau": [6, 18], "tau_1": 32, "tau_2": 32, "te": 35, "team": [19, 35], "technic": [23, 24, 25, 26, 27, 28, 35, 36], "technol": 25, "televis": [23, 24], "templat": 30, "temporari": 19, "temporarili": 19, "tend": 33, "ter": 35, "term": [3, 4, 18, 20, 21, 22, 23, 24, 28, 29, 30, 35, 36, 37], "term_categori": 26, "term_level": 26, "terminologi": [25, 26, 27, 28, 35, 36], "test": [18, 20, 23, 24, 29, 30, 33, 35, 36], "testfile3": 29, "testfolder_": 29, "testfolder_57": 29, "testfolder_nam": 29, "text": [23, 24, 35], "th": [31, 32], "thainp": 31, "than": [5, 13, 15, 23, 24, 31, 33], "thei": [19, 20], "theori": 31, "therapeut": 28, "therapi": [23, 24, 33], "therefor": 34, "thesauru": 35, "thi": [0, 3, 4, 5, 10, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37], "third": 34, "those": 25, "threaten": 19, "three": [3, 4, 33], "through": [20, 35, 36, 37], "ti": [31, 32], "time": [7, 8, 26, 32, 35], "times_": 32, "titl": [5, 7, 8, 10, 14, 15, 21, 23, 24, 30, 32, 35], "tmp0": 12, "tmp1": 12, "to_cat": [5, 13, 15], "to_csv": 25, "to_right": [2, 3, 4, 5, 12, 13, 15, 27], "toler": [23, 24], "tolist": [27, 32, 33], "tool": 30, "total": [22, 26, 33, 34, 37], "total_count": 22, "total_sum": 22, "toward": 19, "toxic": [23, 24], "toxicologi": [23, 24], "tqmp": 33, "tr": 36, "traceback": 27, "track": [23, 24], "trail": 22, "train": 37, "transfer": [23, 24], "transit": 36, "translat": 37, "transpar": 27, "travers": 12, "treatment": 22, "tree": [5, 12, 13, 15, 16, 18, 23, 24, 29, 37], "trial": [22, 23, 24, 35, 36], "troll": 19, "tropic": [23, 24], "troubleshoot": 20, "trt1": 22, "trt2": 22, "true": [3, 4, 5, 6, 10, 13, 15, 25, 26, 27, 29, 33], "tupl": [3, 4], "tutori": 33, "two": [5, 6, 7, 8, 13, 15, 25, 33, 34], "txt": [5, 15, 16, 23, 24, 29, 35], "type": [1, 3, 4, 5, 10, 12, 13, 14, 15, 16, 22, 23, 24, 29, 32, 33, 37], "typo": [23, 24], "ua": 37, "uebersax": 33, "unaccept": 19, "unapprov": [23, 24], "uncontrol": [23, 24], "under": [21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 35, 36, 37], "understand": [25, 26, 27, 28], "unequ": 33, "uniqu": [1, 3, 4, 5, 10, 13, 15, 27, 31], "unit": 36, "unprocess": 12, "untitl": [23, 24], "unwelcom": 19, "unzip": 25, "uom": 36, "up": [2, 20, 25, 26], "updat": [5, 14, 15, 18, 20, 23, 24, 27, 35], "update_paramet": [5, 14, 15, 21], "upper": [23, 24, 25], "url": [10, 30], "us": [5, 10, 15, 16, 19, 20, 22, 25, 26, 27, 28, 29, 31, 32, 33, 34, 35, 36, 37], "usabl": 27, "usag": [25, 27], "user": [25, 27, 35], "util": [0, 5, 21, 23, 24, 27, 29, 30, 35, 36], "v": 22, "v1": [23, 24, 33, 37], "v2": [33, 37], "v26": 26, "v3": 30, "v4": [23, 24], "v_": 33, "v_0": 34, "v_1": [33, 34], "v_2": [33, 34], "v_3": [33, 34], "v_4": 34, "v_j": [33, 34], "valid": [3, 4, 23, 24, 35, 37], "valu": [1, 5, 6, 7, 8, 13, 15, 21, 33, 34, 35], "value_count": [26, 27], "valueerror": [1, 5, 6, 10, 12, 13, 14, 15], "var": [32, 34], "variabl": [5, 14, 15, 21, 31, 32], "varianc": [18, 34], "variat": [33, 37], "vcd": 33, "vdot": [31, 32, 33, 34], "vector": [31, 32], "venot": 25, "versa": 25, "version": [3, 4, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 36, 37], "version_numb": [3, 4], "version_number_u": [3, 4], "via": 19, "vice": 25, "video": 37, "view": [23, 24, 37], "viewer": 25, "viewpoint": 19, "violin": 18, "visit": [22, 25, 27, 35], "visit1": 22, "visit2": 22, "visit3": 22, "visit4": 22, "vitro": [23, 24], "vivo": [23, 24], "vocabulari": 35, "volum": 33, "volunt": 20, "voucher": [23, 24], "w": [28, 29], "w_": 33, "wa": [30, 35, 37], "wai": 19, "waiver": [23, 24], "want": 20, "warn": [21, 23, 24, 32], "warranti": [21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "we": [19, 31, 32, 34], "weak": 33, "web": [20, 23, 24, 26, 27, 35, 36, 37], "webpag": [25, 28], "websit": 25, "weder": 28, "weight": 26, "welcom": [19, 20], "were": [23, 24, 27, 30, 34], "what": 19, "when": [3, 4, 19, 20, 27, 32], "where": [3, 4, 6, 31, 32, 33, 34], "whether": [3, 4, 5, 12, 13, 15], "which": [19, 23, 24, 31, 34, 35, 36, 37], "while": [30, 34, 35], "white": 35, "who": 19, "whodrug": 30, "whoever": 20, "why": [27, 37], "width": [5, 14, 15], "wiki": [19, 31, 32, 33, 34], "wikipedia": [31, 32, 33, 34], "window": 29, "wise": [32, 37], "with_count": [5, 15, 16, 29], "with_detail": [3, 4, 26], "with_file_label": [5, 15, 16], "with_soc": [3, 4, 27], "withdraw": [23, 24], "within": [19, 22, 23, 24, 32, 35], "without": [19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 35, 36, 37], "word": [2, 23, 24, 35], "work": [20, 23, 24, 26, 27, 28], "workshop": 27, "worldwid": 36, "would": [20, 34], "wright": 33, "written": [23, 24], "wu": 27, "www": [33, 35], "x": [5, 6, 7, 8, 14, 15, 21, 22, 33, 37], "x_col": [5, 14, 15, 21], "x_label_rot": [5, 14, 15], "x_n": 32, "x_scale_bas": [5, 14, 15], "xevprm": 36, "xml": [18, 35], "y": [5, 6, 7, 8, 14, 15, 18, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 36, 37], "y1": [7, 8, 31, 32, 33], "y2": [7, 8, 31, 32, 33], "y_": [31, 32, 33, 34], "y_col": [5, 14, 15, 21], "y_count": [33, 34], "y_count_sq": [7, 8], "y_scale_bas": [5, 14, 15, 21], "year": [3, 4, 25, 26, 27, 30, 31, 32, 33, 34, 35, 36], "yeawr": 32, "yh202109": 30, "you": [20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 33, 35, 36, 37], "your": 20, "z_": 32}, "titles": ["API Reference", "mtbp3.health.clinical", "mtbp3.health.ectd", "mtbp3.health.emt", "mtbp3.health", "mtbp3", "mtbp3.statlab.corr", "mtbp3.statlab", "mtbp3.statlab.kappa", "mtbp3.stdcdisc", "mtbp3.stdcdisc.lib", "mtbp3.stdiso", "mtbp3.stdiso.pdfsummary", "mtbp3.util.cdt", "mtbp3.util.cdtg", "mtbp3.util", "mtbp3.util.lsr", "mtbp3.util.util", "Changelog", "Code of Conduct", "Contributing", "U/Graph/Categorical Plots Using catPlotter", "H/Clinical/Grouped Summary", "H/ICH/eCTD/US/3.2/Heading", "H/ICH/eCTD/US/4.0/Heading", "H/ICH/MedDRA/Basics", "H/ICH/MedDRA/SMQs by ICH", "H/ICH/MedDRA/FMQs by FDA", "H/ICH/MedDRA/(MLGs by CIOMS)", "U/System/List Folder Contents", "mtbp3", "StatLab/Corr/NP/Spearman\u2019s Rho", "StatLab/Corr/NP/Kendall\u2019s Tau", "StatLab/Reli/Cohen\u2019s Kappa", "StatLab/Reli/Fleiss\u2019s Kappa", "Std/CDISC/Library Resource", "Std/ISO/IDMP", "Std/ISO/PDF"], "titleterms": {"": [31, 32, 33, 34], "0": [24, 31, 32, 33, 34], "01": 18, "02": 18, "03": 18, "05": 18, "06": 18, "07": 18, "09": 18, "0909090909090909": 34, "1": [18, 22, 23, 24, 31, 32, 33, 34], "10": 18, "11": 18, "12": 18, "13": 18, "14": 18, "15": 18, "18": 18, "19": 18, "1960": 33, "2": [18, 23, 24, 33], "20": 18, "2012": 33, "2024": 18, "21": 18, "22": 18, "26": 18, "27": 18, "28": 18, "29": 18, "3": [18, 23, 24, 33], "30": 18, "39": 18, "4": [18, 23, 24], "42": 18, "43": 18, "48": 18, "5": [18, 23, 24], "50": 18, "6": 18, "7": 18, "7241379310344827": 33, "8": 18, "9": 18, "The": [23, 24], "access": 35, "across": 25, "algorithm": 32, "ani": 27, "api": 0, "appendix": 27, "assign": [25, 26, 27], "attribut": [2, 5, 12, 15, 17, 19], "background": [31, 32, 33, 34], "basic": 25, "bootstrap": 33, "bubbl": 33, "bug": 20, "categor": 21, "categori": 33, "catplott": 21, "cdisc": 35, "cdt": 13, "cdtg": 14, "changelog": 18, "ci": 33, "ciom": 28, "cite": 30, "class": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16], "clinic": [1, 22], "code": [19, 20], "cohen": 33, "comprehens": [23, 24], "conduct": [19, 20], "content": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 17, 23, 24, 29, 30], "contribut": [20, 30], "corr": [6, 31, 32], "count": [33, 34], "credit": 30, "ct": 35, "ctoc": [23, 24], "databas": 36, "demo": 27, "detail": [31, 34], "differ": 25, "distribut": [25, 26], "document": 20, "ectd": [2, 23, 24], "ema": 36, "emt": 3, "enforc": 19, "eu": 36, "exampl": [22, 31, 32, 33, 34], "exercis": [32, 33, 34], "extens": 33, "fda": [23, 24, 27], "featur": 20, "feedback": 20, "file": 27, "find": [23, 24, 25, 26, 27], "fix": 20, "fleiss": 34, "fmq": 27, "folder": [25, 26, 29], "foundat": 35, "function": [5, 13, 15, 17], "get": [20, 35], "given": [25, 26, 27], "graph": 21, "group": [22, 31, 32, 33, 34], "guidelin": 20, "h": [22, 23, 24, 25, 26, 27, 28], "head": [23, 24], "health": [1, 2, 3, 4], "hierarch": 25, "hierarchi": [23, 24], "how": [30, 31, 32, 33, 34], "ich": [23, 24, 25, 26, 27, 28], "idmp": 36, "implement": [20, 36], "instal": 30, "interpret": 33, "iso": [36, 37], "kappa": [8, 33, 34], "kendal": 32, "keyword": [23, 24], "lab": [32, 33, 34], "level": 25, "lib": 10, "librari": 35, "licens": 30, "list": [27, 29], "literatur": 33, "local": 27, "lsr": 16, "mchugh": 33, "meddra": [25, 26, 27, 28], "mlg": 28, "modul": [1, 2, 3, 6, 8, 10, 12, 13, 14, 16, 17, 23, 24], "more": [31, 33, 34], "mtbp3": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 30], "notat": [31, 32, 33, 34], "np": [31, 32], "observ": [31, 32], "option": [25, 29], "other": [25, 29], "our": 19, "packag": [4, 5, 7, 15, 35], "path": 27, "pdf": 37, "pdfsummari": 12, "pledg": 19, "plot": [21, 33], "project": 36, "pt": 27, "pull": 20, "rate": 34, "refer": [0, 23, 24, 25, 26, 27, 28, 31, 32, 33, 34, 35, 36, 37], "reli": [33, 34], "report": 20, "request": 20, "resourc": 35, "respons": 19, "rho": 31, "save": 27, "scope": 19, "section": [23, 24], "select": 35, "smq": 26, "spearman": 31, "standard": [19, 35], "start": 20, "statlab": [6, 7, 8, 31, 32, 33, 34], "std": [35, 36, 37], "stdcdisc": [9, 10], "stdiso": [11, 12], "submit": 20, "submodul": [4, 7, 9, 11, 15], "subpackag": 5, "suggest": 33, "summari": 22, "system": 29, "tabl": [23, 24, 30], "tau": 32, "term": [25, 26, 27], "tree": 27, "type": 20, "u": [21, 23, 24, 29], "unicom": 36, "us": [21, 23, 24], "usag": 30, "util": [13, 14, 15, 16, 17], "v0": 18, "valu": [31, 32], "version": 35, "view": 27, "weight": 33, "within": 25, "write": 20, "xevmpd": 36}})
\ No newline at end of file
