diff --git a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
index e88afcb9..807fb712 100644
--- a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
+++ b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
@@ -328,7 +328,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 25-Jul-2024 at 01:27:35 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 25-Jul-2024 at 01:47:36 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -429,7 +429,7 @@ <h2>Summary</h2>
     </table>
   </body>
   <footer>
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&#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;, &#34;duration&#34;: &#34;1 ms&#34;, 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&#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlgt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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&#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;, &#34;duration&#34;: &#34;25 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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index 1baa611b..42c3f5f8 100644
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+++ b/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
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diff --git a/_modules/mtbp3/stdcdisc/lib.html b/_modules/mtbp3/stdcdisc/lib.html
index df2aeed8..0ea5b71d 100644
--- a/_modules/mtbp3/stdcdisc/lib.html
+++ b/_modules/mtbp3/stdcdisc/lib.html
@@ -283,21 +283,25 @@ <h1>Source code for mtbp3.stdcdisc.lib</h1><div class="highlight"><pre>
             <span class="n">remaining_list_label</span> <span class="o">=</span> <span class="p">[]</span>
             <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">codelists</span><span class="p">):</span>
                 <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="s1">&#39;conceptId&#39;</span> <span class="ow">in</span> <span class="n">item</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span> <span class="ow">and</span> <span class="s1">&#39;name&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">item</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-                        <span class="n">item</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span><span class="o">=</span><span class="s2">&quot;&quot;</span>
+                    <span class="k">if</span> <span class="s1">&#39;group&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">item</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                        <span class="n">item</span><span class="p">[</span><span class="s1">&#39;group&#39;</span><span class="p">]</span><span class="o">=</span><span class="s2">&quot;&quot;</span>
                     <span class="k">if</span> <span class="s1">&#39;synonyms&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">item</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
                         <span class="n">item</span><span class="p">[</span><span class="s1">&#39;synonyms&#39;</span><span class="p">]</span><span class="o">=</span><span class="p">[]</span>
                     <span class="k">if</span> <span class="s1">&#39;terms&#39;</span> <span class="ow">in</span> <span class="n">item</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="s1">&#39;terms&#39;</span><span class="p">])):</span>
+                            <span class="k">if</span> <span class="s1">&#39;name&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;terms&#39;</span><span class="p">][</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+                                <span class="n">item</span><span class="p">[</span><span class="s1">&#39;terms&#39;</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+                                <span class="n">item</span><span class="p">[</span><span class="s1">&#39;terms&#39;</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="s1">&#39;group&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span>
                         <span class="n">nterms</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="s1">&#39;terms&#39;</span><span class="p">])</span>
                         <span class="n">remaining_list</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="s1">&#39;terms&#39;</span><span class="p">])</span>
                         <span class="n">remaining_list_label</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="n">codelists_label</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">+</span><span class="s1">&#39;.pseudo&#39;</span><span class="o">+</span><span class="n">item</span><span class="p">[</span><span class="s1">&#39;conceptId&#39;</span><span class="p">]]</span><span class="o">*</span><span class="n">nterms</span><span class="p">)</span>
                     <span class="k">else</span><span class="p">:</span>
                         <span class="n">nterms</span> <span class="o">=</span> <span class="mi">0</span>
-                    <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">codelists_label</span><span class="p">[</span><span class="n">index</span><span class="p">],</span> <span class="n">level</span><span class="p">,</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;conceptId&#39;</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;preferredTerm&#39;</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;submissionValue&#39;</span><span class="p">],</span> <span class="s1">&#39;; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="s1">&#39;synonyms&#39;</span><span class="p">]),</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;definition&#39;</span><span class="p">],</span> <span class="n">nterms</span><span class="p">])</span>
+                    <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">codelists_label</span><span class="p">[</span><span class="n">index</span><span class="p">],</span> <span class="n">level</span><span class="p">,</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;conceptId&#39;</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;group&#39;</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;preferredTerm&#39;</span><span class="p">],</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;submissionValue&#39;</span><span class="p">],</span> <span class="s1">&#39;; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="s1">&#39;synonyms&#39;</span><span class="p">]),</span> <span class="n">item</span><span class="p">[</span><span class="s1">&#39;definition&#39;</span><span class="p">],</span> <span class="n">nterms</span><span class="p">])</span>
                 <span class="k">else</span><span class="p">:</span>
                     <span class="n">not_processed</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
                     
-        <span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">columns</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;label&#39;</span><span class="p">,</span> <span class="s1">&#39;level&#39;</span><span class="p">,</span> <span class="s1">&#39;conceptId&#39;</span><span class="p">,</span> <span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="s1">&#39;preferredTerm&#39;</span><span class="p">,</span> <span class="s1">&#39;submissionValue&#39;</span><span class="p">,</span> <span class="s1">&#39;synonyms&#39;</span><span class="p">,</span> <span class="s1">&#39;definition&#39;</span><span class="p">,</span> <span class="s1">&#39;terms&#39;</span><span class="p">])</span>
+        <span class="n">df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">columns</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;label&#39;</span><span class="p">,</span> <span class="s1">&#39;level&#39;</span><span class="p">,</span> <span class="s1">&#39;conceptId&#39;</span><span class="p">,</span> <span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="s1">&#39;group&#39;</span><span class="p">,</span> <span class="s1">&#39;preferredTerm&#39;</span><span class="p">,</span> <span class="s1">&#39;submissionValue&#39;</span><span class="p">,</span> <span class="s1">&#39;synonyms&#39;</span><span class="p">,</span> <span class="s1">&#39;definition&#39;</span><span class="p">,</span> <span class="s1">&#39;terms&#39;</span><span class="p">])</span>
         <span class="n">label</span> <span class="o">=</span> <span class="n">df</span><span class="p">[[</span><span class="s1">&#39;label&#39;</span><span class="p">,</span> <span class="s1">&#39;preferredTerm&#39;</span><span class="p">]]</span>
         <span class="n">df</span> <span class="o">=</span> <span class="n">df</span><span class="o">.</span><span class="n">drop</span><span class="p">(</span><span class="s1">&#39;label&#39;</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
 
diff --git a/_sources/std_cdisc.ipynb.txt b/_sources/std_cdisc.ipynb.txt
index f39c871f..baac1a9f 100644
--- a/_sources/std_cdisc.ipynb.txt
+++ b/_sources/std_cdisc.ipynb.txt
@@ -226,12 +226,13 @@
             "cell_type": "markdown",
             "metadata": {},
             "source": [
-                "To get the newest protocol ct package information:\n",
+                "To get the newest Protocol CT package in DataFrame format:\n",
                 "\n",
                 "```python\n",
-                "title = 'Protocol'\n",
-                "cl = accessLib(\"/Users/yh2020/cdisc.txt\")\n",
+                "from mtbp3.stdcdisc.lib import accessLib\n",
+                "cl = accessLib(\"/user/home/name/cdisc.txt\")\n",
                 "cl.get_ct_list()\n",
+                "title = 'Protocol'\n",
                 "cl.get_ct_package(title)\n",
                 "cl.get_ct_codelists_df(title)\n",
                 "print(cl.ct_package[title]['ct_df'][['conceptId', 'name', 'preferredTerm']].head())\n",
@@ -249,6 +250,31 @@
                 "```"
             ]
         },
+        {
+            "cell_type": "markdown",
+            "metadata": {},
+            "source": [
+                "To get the newest Glossary CT package in DataFrame format:\n",
+                "\n",
+                "```python\n",
+                "title = 'Glossary'\n",
+                "cl.get_ct_package(title)\n",
+                "cl.get_ct_codelists_df(title)\n",
+                "print(cl.ct_package[title]['ct_df'][['conceptId', 'name', 'group', 'preferredTerm', 'definition']].head())\n",
+                "```\n",
+                "\n",
+                "Output:\n",
+                "\n",
+                "```\n",
+                "  conceptId            name           group                  preferredTerm                                         definition\n",
+                "0    C67497  CDISC Glossary                     CDISC Glossary Terminology  The terminology of the Clinical Data Interchan...\n",
+                "1    C80442                  CDISC Glossary  Premarket Device Notification  510(k). Premarket Notification (PMN) required ...\n",
+                "2    C42610                  CDISC Glossary                   Abbreviation  A set of letters that are drawn from a word or...\n",
+                "3    C71733                  CDISC Glossary          Biological Absorption  The process by which medications reach the blo...\n",
+                "4   C156638                  CDISC Glossary           Accelerated Approval  Regulatory mechanism by which new drugs meant ...\n",
+                "```"
+            ]
+        },
         {
             "cell_type": "markdown",
             "metadata": {},
diff --git a/_static/reports/coverage/coverage-badge.svg b/_static/reports/coverage/coverage-badge.svg
index 2ef4b440..728b6819 100644
--- a/_static/reports/coverage/coverage-badge.svg
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[{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree&#34;, &#34;duration&#34;: &#34;13 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_lsr.py::TestLsrTree::test_list_files_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;13 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_lsr.py::TestLsrTree::test_list_files_tree2&#34;, &#34;duration&#34;: &#34;8 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&#34;, &#34;duration&#34;: &#34;2 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_calculate_kendall_tau_with_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;2 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&#34;, &#34;duration&#34;: &#34;17 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_corr.py::TestCorrCalculator::test_plot_y_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;17 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&#34;, &#34;duration&#34;: &#34;228 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_bootstrap_cohen_ci&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;228 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;, &#34;duration&#34;: &#34;68 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;68 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: 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     <script>
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 const { getCollapsedCategory, setCollapsedIds } = require('./storage.js')
diff --git a/example_cdtg.html b/example_cdtg.html
index aecb75b6..167bd904 100644
--- a/example_cdtg.html
+++ b/example_cdtg.html
@@ -133,15 +133,15 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 11.1% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 27.8% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
   warnings.warn(msg, UserWarning)
-/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 25.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
+/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 30.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
   warnings.warn(msg, UserWarning)
-/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 15.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
+/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 20.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
   warnings.warn(msg, UserWarning)
 </pre></div>
 </div>
-<img alt="_images/fa3fcaccd3139b00f6f2de0ee98ea1e157d7aecb76dc3444ab416b989e9dc522.png" src="_images/fa3fcaccd3139b00f6f2de0ee98ea1e157d7aecb76dc3444ab416b989e9dc522.png" />
+<img alt="_images/4485653a7a60eeb998d02e40d196b1912c5e1fbb0a3e450c117a0384d467c1c0.png" src="_images/4485653a7a60eeb998d02e40d196b1912c5e1fbb0a3e450c117a0384d467c1c0.png" />
 </div>
 </div>
 <p>To create a line plot:</p>
@@ -153,7 +153,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="_images/9548cb2fee5b1ca7643cf21d205aca226cb8aed4cf5073a4f2f66661d6f4d639.png" src="_images/9548cb2fee5b1ca7643cf21d205aca226cb8aed4cf5073a4f2f66661d6f4d639.png" />
+<img alt="_images/557abebaa61f2289eda98ce1bd2239c10de44810789bda61ed27fdb2b7b24962.png" src="_images/557abebaa61f2289eda98ce1bd2239c10de44810789bda61ed27fdb2b7b24962.png" />
 </div>
 </div>
 </section>
diff --git a/example_clinical.html b/example_clinical.html
index dc2f3337..38f2bf9f 100644
--- a/example_clinical.html
+++ b/example_clinical.html
@@ -131,8 +131,8 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  meal  calorie
-0  STD1      TRT1  SUBJ01  VISIT1     1     1880
-1  STD1      TRT1  SUBJ01  VISIT1     2     1884
+0  STD1      TRT1  SUBJ01  VISIT1     1     1770
+1  STD1      TRT1  SUBJ01  VISIT1     2      360
 </pre></div>
 </div>
 </div>
@@ -149,12 +149,12 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  N(0&lt;=X&lt;500)  N(500&lt;=X&lt;1000)  \
-0  STD1      TRT1  SUBJ01  VISIT1            0               1   
-1  STD1      TRT1  SUBJ02  VISIT1            0               3   
+0  STD1      TRT1  SUBJ01  VISIT1            1               0   
+1  STD1      TRT1  SUBJ02  VISIT1            0               1   
 
    N(1000&lt;=V&lt;=2000)  N(all)  
 0                 3       4  
-1                 2       5  
+1                 2       3  
 </pre></div>
 </div>
 </div>
@@ -169,22 +169,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  N(0&lt;=X&lt;3)  N(3&lt;=X&lt;5)  N(5&lt;=V&lt;=7)  N(all)
-0   STD1      TRT1  VISIT1          6          9           5      20
-1   STD1      TRT1  VISIT2          2          9           3      14
-2   STD1      TRT1  VISIT3          3          1           2       6
-3   STD1      TRT1  VISIT4          0          4           0       4
-4   STD1      TRT2  VISIT1          5         10           5      20
-5   STD1      TRT2  VISIT2          4         10           3      17
-6   STD1      TRT2  VISIT3          3          7           2      12
-7   STD1      TRT2  VISIT4          0          1           4       5
-8   STD2      TRT1  VISIT1          4          7           9      20
-9   STD2      TRT1  VISIT2          2         11           1      14
-10  STD2      TRT1  VISIT3          2          4           4      10
-11  STD2      TRT1  VISIT4          1          1           2       4
-12  STD2      TRT2  VISIT1          5          5          10      20
-13  STD2      TRT2  VISIT2          5          8           4      17
-14  STD2      TRT2  VISIT3          2          7           1      10
-15  STD2      TRT2  VISIT4          2          1           1       4
+0   STD1      TRT1  VISIT1          7         10           3      20
+1   STD1      TRT1  VISIT2          6          4           3      13
+2   STD1      TRT1  VISIT3          8          2           1      11
+3   STD1      TRT1  VISIT4          4          2           1       7
+4   STD1      TRT2  VISIT1          4         11           5      20
+5   STD1      TRT2  VISIT2          3          9           5      17
+6   STD1      TRT2  VISIT3          3          4           4      11
+7   STD1      TRT2  VISIT4          1          3           1       5
+8   STD2      TRT1  VISIT1          3         12           5      20
+9   STD2      TRT1  VISIT2          2          5           7      14
+10  STD2      TRT1  VISIT3          2          3           4       9
+11  STD2      TRT1  VISIT4          0          1           2       3
+12  STD2      TRT2  VISIT1          3         13           4      20
+13  STD2      TRT2  VISIT2          3          8           3      14
+14  STD2      TRT2  VISIT3          4          4           0       8
+15  STD2      TRT2  VISIT4          2          0           6       8
 </pre></div>
 </div>
 </div>
@@ -198,22 +198,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  Sum(0&lt;=X&lt;3)  Sum(3&lt;=X&lt;5)  Sum(5&lt;=V&lt;=7)  Sum(all)
-0   STD1      TRT1  VISIT1           12           34            25        71
-1   STD1      TRT1  VISIT2            4           33            15        52
-2   STD1      TRT1  VISIT3            6            3            10        19
-3   STD1      TRT1  VISIT4            0           15             0        15
-4   STD1      TRT2  VISIT1           10           34            25        69
-5   STD1      TRT2  VISIT2            8           34            15        57
-6   STD1      TRT2  VISIT3            6           24            10        40
-7   STD1      TRT2  VISIT4            0            4            20        24
-8   STD2      TRT1  VISIT1            8           23            45        76
-9   STD2      TRT1  VISIT2            4           40             5        49
-10  STD2      TRT1  VISIT3            4           14            20        38
-11  STD2      TRT1  VISIT4            2            3            10        15
-12  STD2      TRT2  VISIT1           10           17            50        77
-13  STD2      TRT2  VISIT2           10           27            20        57
-14  STD2      TRT2  VISIT3            4           25             5        34
-15  STD2      TRT2  VISIT4            4            3             5        12
+0   STD1      TRT1  VISIT1           14           35            15        64
+1   STD1      TRT1  VISIT2           12           14            15        41
+2   STD1      TRT1  VISIT3           16            6             5        27
+3   STD1      TRT1  VISIT4            8            7             5        20
+4   STD1      TRT2  VISIT1            8           36            25        69
+5   STD1      TRT2  VISIT2            6           32            25        63
+6   STD1      TRT2  VISIT3            6           14            20        40
+7   STD1      TRT2  VISIT4            2           12             5        19
+8   STD2      TRT1  VISIT1            6           44            25        75
+9   STD2      TRT1  VISIT2            4           17            35        56
+10  STD2      TRT1  VISIT3            4           11            20        35
+11  STD2      TRT1  VISIT4            0            4            10        14
+12  STD2      TRT2  VISIT1            6           45            20        71
+13  STD2      TRT2  VISIT2            6           28            15        49
+14  STD2      TRT2  VISIT3            8           14             0        22
+15  STD2      TRT2  VISIT4            4            0            30        34
 </pre></div>
 </div>
 </div>
diff --git a/example_emt3.html b/example_emt3.html
index 1ec9168d..0ab5111e 100644
--- a/example_emt3.html
+++ b/example_emt3.html
@@ -295,92 +295,92 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
     ├── Abdominal Pain:
     │   ├── [Classification] Broad:
     │   │   ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-    │   │   │   ├── [PT01] Carnett&#39;s sign positive
-    │   │   │   ├── [PT02] Gastro-enterostomy
-    │   │   │   ├── [PT03] Helicobacter duodenal ulcer
-    │   │   │   ├── [PT04] Large intestine infection
-    │   │   │   ├── [PT05] Bauhin&#39;s valve syndrome
-    │   │   │   └── [PT06] Peritoneoplasty
+    │   │   │   ├── [PT01] Complicated appendicitis
+    │   │   │   ├── [PT02] Gastric irritation
+    │   │   │   ├── [PT03] Gastroenteritis escherichia coli
+    │   │   │   ├── [PT04] Helicobacter duodenal ulcer
+    │   │   │   ├── [PT05] Infantile colic
+    │   │   │   ├── [PT06] Large intestine infection
+    │   │   │   ├── [PT07] Peptic ulcer
+    │   │   │   ├── [PT08] Ulcerative duodenitis
+    │   │   │   └── [PT09] Bauhin&#39;s valve syndrome
     │   │   ├── [SOC] soc360phgmkaCxrALPg:
-    │   │   │   ├── [PT07] Gastric irritation
-    │   │   │   ├── [PT08] Gastritis erosive
-    │   │   │   ├── [PT09] Haemorrhagic erosive gastritis
-    │   │   │   ├── [PT10] Infantile colic
-    │   │   │   ├── [PT11] Peptic ulcer
-    │   │   │   ├── [PT12] CRIA syndrome
-    │   │   │   └── [PT13] Segmental arterial mediolysis
+    │   │   │   ├── [PT10] Haemorrhagic erosive gastritis
+    │   │   │   ├── [PT11] Visceral pain
+    │   │   │   └── [PT12] Peritoneoplasty
     │   │   └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-    │   │       ├── [PT14] Complicated appendicitis
-    │   │       ├── [PT15] Gastroenteritis escherichia coli
-    │   │       ├── [PT16] Gastroenteritis Escherichia coli
-    │   │       ├── [PT17] Gastroenterostomy
-    │   │       ├── [PT18] Ulcerative duodenitis
-    │   │       ├── [PT19] Visceral pain
-    │   │       └── [PT20] Yao syndrome
+    │   │       ├── [PT13] Carnett&#39;s sign positive
+    │   │       ├── [PT14] Gastritis erosive
+    │   │       ├── [PT15] Gastroenteritis Escherichia coli
+    │   │       ├── [PT16] Gastroenterostomy
+    │   │       ├── [PT17] Gastro-enterostomy
+    │   │       ├── [PT18] CRIA syndrome
+    │   │       ├── [PT19] Yao syndrome
+    │   │       └── [PT20] Segmental arterial mediolysis
     │   └── [Classification] Narrow:
     │       ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-    │       │   ├── [PT21] Abdominal pain
-    │       │   ├── [PT22] Abdominal pain NOS
-    │       │   ├── [PT23] Abdominal rebound tenderness
-    │       │   ├── [PT24] Abdominal tenderness
-    │       │   ├── [PT25] Enteric neuropathy
-    │       │   ├── [PT26] Perihepatic discomfort
-    │       │   └── [PT27] Stomach discomfort
+    │       │   ├── [PT21] Abdominal discomfort
+    │       │   ├── [PT22] Abdominal migraine
+    │       │   ├── [PT23] Abdominal pain
+    │       │   ├── [PT24] Abdominal pain lower
+    │       │   ├── [PT25] Abdominal pain NOS
+    │       │   ├── [PT26] Abdominal rebound tenderness
+    │       │   ├── [PT27] Abdominal rigidity
+    │       │   ├── [PT28] Abdominal tenderness
+    │       │   ├── [PT29] Gastrointestinal pain
+    │       │   ├── [PT30] Gastrointestinal upset
+    │       │   ├── [PT31] Perihepatic discomfort
+    │       │   ├── [PT32] Spleen pain
+    │       │   ├── [PT33] Stomach discomfort
+    │       │   └── [PT34] Ilioinguinal neuralgia
     │       ├── [SOC] soc360phgmkaCxrALPg:
-    │       │   ├── [PT28] Abdominal migraine
-    │       │   ├── [PT29] Abdominal pain aggravated
-    │       │   ├── [PT30] Abdominal pain upper
-    │       │   ├── [PT31] Abdominal rigidity
-    │       │   ├── [PT32] Acute abdomen
-    │       │   ├── [PT33] Epigastric discomfort
-    │       │   ├── [PT34] Gastrointestinal upset
-    │       │   ├── [PT35] Intestinal spasm
-    │       │   ├── [PT36] Spleen pain
-    │       │   └── [PT37] Ulcer type pain
+    │       │   ├── [PT35] Abdominal pain aggravated
+    │       │   ├── [PT36] Acute abdomen
+    │       │   ├── [PT37] Epigastric discomfort
+    │       │   └── [PT38] Intestinal spasm
     │       └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-    │           ├── [PT38] Abdominal discomfort
-    │           ├── [PT39] Abdominal pain lower
-    │           ├── [PT40] Gastrointestinal discomfort
-    │           ├── [PT41] Gastrointestinal pain
+    │           ├── [PT39] Abdominal pain upper
+    │           ├── [PT40] Enteric neuropathy
+    │           ├── [PT41] Gastrointestinal discomfort
     │           ├── [PT42] Gastrointestinal pain NOS
-    │           └── [PT43] Ilioinguinal neuralgia
+    │           └── [PT43] Ulcer type pain
     └── Abnormal Uterine Bleeding:
         ├── [Classification] Broad:
         │   ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-        │   │   ├── [PT01] Bleeding anovulatory
-        │   │   ├── [PT02] Dysmenorrhoea
-        │   │   ├── [PT03] Follicle-stimulating hormone deficiency
-        │   │   ├── [PT04] Menstrual disorder
-        │   │   └── [PT05] Uterine dehiscence
+        │   │   └── [PT01] Bleeding anovulatory
         │   ├── [SOC] soc360phgmkaCxrALPg:
-        │   │   ├── [PT06] Dysmenorrhea
-        │   │   └── [PT07] Ovarian dysfunction
+        │   │   ├── [PT02] Dysmenorrhea
+        │   │   ├── [PT03] Menstrual disorder
+        │   │   ├── [PT04] Uterine dehiscence
+        │   │   └── [PT05] Ovarian dysfunction
         │   └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-        │       ├── [PT08] Anovulatory cycle
+        │       ├── [PT06] Anovulatory cycle
+        │       ├── [PT07] Dysmenorrhoea
+        │       ├── [PT08] Follicle-stimulating hormone deficiency
         │       └── [PT09] Follicle stimulating hormone deficiency
         └── [Classification] Narrow:
             ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-            │   ├── [PT10] Abnormal uterine bleeding
-            │   ├── [PT11] Dysfunctional uterine bleeding
-            │   ├── [PT12] Menometrorrhagia
-            │   ├── [PT13] Menorrhagia
+            │   ├── [PT10] Cervix haemorrhage uterine
+            │   ├── [PT11] Heavy menstrual bleeding
+            │   ├── [PT12] Hypomenorrhoea
+            │   ├── [PT13] Metrorrhagia
             │   ├── [PT14] Oligomenorrhoea
-            │   ├── [PT15] Polymenorrhoea
-            │   └── [PT16] Uterine haemorrhage
+            │   ├── [PT15] Polymenorrhagia
+            │   ├── [PT16] Uterine rupture
+            │   └── [PT17] Vaginal haemorrhage
             ├── [SOC] soc360phgmkaCxrALPg:
-            │   ├── [PT17] Cervix haemorrhage uterine
-            │   ├── [PT18] Heavy menstrual bleeding
-            │   ├── [PT19] Polymenorrhagia
-            │   └── [PT20] Postmenopausal haemorrhage
+            │   ├── [PT18] Abnormal uterine bleeding
+            │   ├── [PT19] Abnormal withdrawal bleeding
+            │   ├── [PT20] Menstruation irregular
+            │   └── [PT21] Polymenorrhoea
             └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-                ├── [PT21] Abnormal withdrawal bleeding
-                ├── [PT22] Hypomenorrhoea
+                ├── [PT22] Dysfunctional uterine bleeding
                 ├── [PT23] Intermenstrual bleeding
-                ├── [PT24] Menstruation delayed
-                ├── [PT25] Menstruation irregular
-                ├── [PT26] Metrorrhagia
-                ├── [PT27] Uterine rupture
-                └── [PT28] Vaginal haemorrhage
+                ├── [PT24] Menometrorrhagia
+                ├── [PT25] Menorrhagia
+                ├── [PT26] Menstruation delayed
+                ├── [PT27] Postmenopausal haemorrhage
+                └── [PT28] Uterine haemorrhage
 </pre></div>
 </div>
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
@@ -404,95 +404,92 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
                                             Abdominal Pain ──┤    
                                 Broad [Classification] ──┤   │    
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤   │   │    
-               Complicated appendicitis [PT01] ──┤   │   │   │    
+                     Gastric irritation [PT01] ──┤   │   │   │    
                      Gastro-enterostomy [PT03] ──┤   │   │   │    
-       Gastroenteritis Escherichia coli [PT02] ──┤   │   │   │    
-            Helicobacter duodenal ulcer [PT04] ──┤   │   │   │    
-                        Infantile colic [PT05] ──┤   │   │   │    
-              Large intestine infection [PT06] ──┤   │   │   │    
-                           Peptic ulcer [PT07] ──┤   │   │   │    
-                        Peritoneoplasty [PT09] ──┤   │   │   │    
-                           Yao syndrome [PT08] ──┘   │   │   │    
+                      Gastroenterostomy [PT02] ──┤   │   │   │    
+         Haemorrhagic erosive gastritis [PT04] ──┤   │   │   │    
+            Helicobacter duodenal ulcer [PT05] ──┤   │   │   │    
+                        Infantile colic [PT06] ──┤   │   │   │    
+                          Visceral pain [PT07] ──┘   │   │   │    
                          soc360phgmkaCxrALPg [SOC] ──┤   │   │    
-                Bauhin&#39;s valve syndrome [PT15] ──┤   │   │   │    
-                          CRIA syndrome [PT14] ──┤   │   │   │    
-                Carnett&#39;s sign positive [PT10] ──┤   │   │   │    
-       Gastroenteritis escherichia coli [PT11] ──┤   │   │   │    
-                      Gastroenterostomy [PT12] ──┤   │   │   │    
-          Segmental arterial mediolysis [PT16] ──┤   │   │   │    
-                  Ulcerative duodenitis [PT13] ──┘   │   │   │    
+                Bauhin&#39;s valve syndrome [PT13] ──┤   │   │   │    
+                Carnett&#39;s sign positive [PT08] ──┤   │   │   │    
+               Complicated appendicitis [PT09] ──┤   │   │   │    
+       Gastroenteritis escherichia coli [PT10] ──┤   │   │   │    
+              Large intestine infection [PT11] ──┤   │   │   │    
+                           Peptic ulcer [PT12] ──┤   │   │   │    
+                           Yao syndrome [PT14] ──┘   │   │   │    
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘   │   │    
-                     Gastric irritation [PT17] ──┤       │   │    
-                      Gastritis erosive [PT18] ──┤       │   │    
-         Haemorrhagic erosive gastritis [PT19] ──┤       │   │    
-                          Visceral pain [PT20] ──┘       │   │    
+                          CRIA syndrome [PT18] ──┤       │   │    
+                      Gastritis erosive [PT15] ──┤       │   │    
+       Gastroenteritis Escherichia coli [PT16] ──┤       │   │    
+                        Peritoneoplasty [PT19] ──┤       │   │    
+          Segmental arterial mediolysis [PT20] ──┤       │   │    
+                  Ulcerative duodenitis [PT17] ──┘       │   │    
                                Narrow [Classification] ──┘   │    
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤       │    
+                     Abdominal pain NOS [PT23] ──┤   │       │    
                          Abdominal pain [PT21] ──┤   │       │    
               Abdominal pain aggravated [PT22] ──┤   │       │    
-                   Abdominal pain lower [PT23] ──┤   │       │    
-                   Abdominal tenderness [PT24] ──┤   │       │    
-                          Acute abdomen [PT25] ──┤   │       │    
-              Gastrointestinal pain NOS [PT26] ──┤   │       │    
-                 Gastrointestinal upset [PT27] ──┤   │       │    
-                 Ilioinguinal neuralgia [PT31] ──┤   │       │    
-                       Intestinal spasm [PT28] ──┤   │       │    
-                 Perihepatic discomfort [PT29] ──┤   │       │    
-                     Stomach discomfort [PT30] ──┘   │       │    
+                     Enteric neuropathy [PT24] ──┤   │       │    
+                       Intestinal spasm [PT25] ──┤   │       │    
+                 Perihepatic discomfort [PT26] ──┤   │       │    
+                            Spleen pain [PT27] ──┤   │       │    
+                        Ulcer type pain [PT28] ──┘   │       │    
                          soc360phgmkaCxrALPg [SOC] ──┤       │    
-                   Abdominal discomfort [PT32] ──┤   │       │    
-                     Abdominal migraine [PT33] ──┤   │       │    
-                   Abdominal pain upper [PT34] ──┤   │       │    
-           Abdominal rebound tenderness [PT35] ──┤   │       │    
-                     Abdominal rigidity [PT36] ──┤   │       │    
-            Gastrointestinal discomfort [PT37] ──┤   │       │    
-                  Gastrointestinal pain [PT38] ──┘   │       │    
+                   Abdominal discomfort [PT29] ──┤   │       │    
+                   Abdominal pain lower [PT30] ──┤   │       │    
+                   Abdominal pain upper [PT31] ──┤   │       │    
+                          Acute abdomen [PT32] ──┤   │       │    
+                  Epigastric discomfort [PT33] ──┤   │       │    
+              Gastrointestinal pain NOS [PT34] ──┤   │       │    
+                 Gastrointestinal upset [PT35] ──┘   │       │    
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘       │    
-                     Abdominal pain NOS [PT39] ──┤           │    
-                     Enteric neuropathy [PT40] ──┤           │    
-                  Epigastric discomfort [PT41] ──┤           │    
-                            Spleen pain [PT42] ──┤           │    
-                        Ulcer type pain [PT43] ──┘           │    
+                     Abdominal migraine [PT36] ──┤           │    
+           Abdominal rebound tenderness [PT37] ──┤           │    
+                     Abdominal rigidity [PT38] ──┤           │    
+                   Abdominal tenderness [PT39] ──┤           │    
+            Gastrointestinal discomfort [PT40] ──┤           │    
+                  Gastrointestinal pain [PT41] ──┤           │    
+                 Ilioinguinal neuralgia [PT43] ──┤           │    
+                     Stomach discomfort [PT42] ──┘           │    
                                  Abnormal Uterine Bleeding ──┘    
                                 Broad [Classification] ──┤        
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤   │        
                    Bleeding anovulatory [PT01] ──┤   │   │        
-                     Uterine dehiscence [PT02] ──┘   │   │        
-                         soc360phgmkaCxrALPg [SOC] ──┤   │        
-Follicle-stimulating hormone deficiency [PT03] ──┤   │   │        
+                           Dysmenorrhea [PT02] ──┤   │   │        
+Follicle stimulating hormone deficiency [PT03] ──┤   │   │        
                     Ovarian dysfunction [PT04] ──┘   │   │        
+                         soc360phgmkaCxrALPg [SOC] ──┤   │        
+                      Anovulatory cycle [PT05] ──┤   │   │        
+                     Menstrual disorder [PT06] ──┤   │   │        
+                     Uterine dehiscence [PT07] ──┘   │   │        
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘   │        
-                      Anovulatory cycle [PT05] ──┤       │        
-                           Dysmenorrhea [PT06] ──┤       │        
-                          Dysmenorrhoea [PT07] ──┤       │        
-Follicle stimulating hormone deficiency [PT08] ──┤       │        
-                     Menstrual disorder [PT09] ──┘       │        
+                          Dysmenorrhoea [PT08] ──┤       │        
+Follicle-stimulating hormone deficiency [PT09] ──┘       │        
                                Narrow [Classification] ──┘        
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤            
-              Abnormal uterine bleeding [PT10] ──┤   │            
-             Cervix haemorrhage uterine [PT11] ──┤   │            
-         Dysfunctional uterine bleeding [PT12] ──┤   │            
-                Intermenstrual bleeding [PT13] ──┤   │            
-                           Metrorrhagia [PT14] ──┤   │            
-                         Polymenorrhoea [PT15] ──┤   │            
-             Postmenopausal haemorrhage [PT16] ──┤   │            
-                        Uterine rupture [PT17] ──┘   │            
+           Abnormal withdrawal bleeding [PT10] ──┤   │            
+             Postmenopausal haemorrhage [PT11] ──┤   │            
+                        Uterine rupture [PT12] ──┤   │            
+                    Vaginal haemorrhage [PT13] ──┘   │            
                          soc360phgmkaCxrALPg [SOC] ──┤            
+             Cervix haemorrhage uterine [PT14] ──┤   │            
+                         Hypomenorrhoea [PT15] ──┤   │            
+                Intermenstrual bleeding [PT16] ──┤   │            
+                       Menometrorrhagia [PT17] ──┤   │            
                             Menorrhagia [PT18] ──┤   │            
-                 Menstruation irregular [PT19] ──┤   │            
-                        Oligomenorrhoea [PT20] ──┤   │            
-                        Polymenorrhagia [PT21] ──┤   │            
-                    Vaginal haemorrhage [PT22] ──┘   │            
+                   Menstruation delayed [PT19] ──┤   │            
+                           Metrorrhagia [PT20] ──┤   │            
+                        Oligomenorrhoea [PT21] ──┤   │            
+                    Uterine haemorrhage [PT22] ──┘   │            
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘            
-           Abnormal withdrawal bleeding [PT23] ──┤                
-               Heavy menstrual bleeding [PT24] ──┤                
-                         Hypomenorrhoea [PT25] ──┤                
-                       Menometrorrhagia [PT26] ──┤                
-                   Menstruation delayed [PT27] ──┤                
-                    Uterine haemorrhage [PT28] ──┘                
-</pre></div>
-</div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
+              Abnormal uterine bleeding [PT23] ──┤                
+         Dysfunctional uterine bleeding [PT24] ──┤                
+               Heavy menstrual bleeding [PT25] ──┤                
+                 Menstruation irregular [PT26] ──┤                
+                        Polymenorrhagia [PT27] ──┤                
+                         Polymenorrhoea [PT28] ──┘                
 </pre></div>
 </div>
 </div>
diff --git a/example_files.html b/example_files.html
index eee21c40..601024dd 100644
--- a/example_files.html
+++ b/example_files.html
@@ -153,7 +153,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_42/
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_36/
 ├── subfolder1/
 └── subfolder2/
     └── testfile3
@@ -170,7 +170,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_42/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_36/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
 ├── subfolder1/  &lt;&lt;&lt;((( Empty Folder )))&gt;&gt;&gt;
 └── subfolder2/  &lt;&lt;&lt;((( F=1; D=0 )))&gt;&gt;&gt;
     └── testfile3
@@ -193,7 +193,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 
                    modified                   created  file_type N_page  \
 0                      None                      None       None   None   
-1  Thu Jul 25 01:28:17 2024  Thu Jul 25 01:28:17 2024  testfile3   None   
+1  Thu Jul 25 01:48:19 2024  Thu Jul 25 01:48:19 2024  testfile3   None   
 
   N_column N_row  
 0     None  None  
diff --git a/searchindex.js b/searchindex.js
index e7368392..178344ac 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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"StatLab/Corr/NP/Spearman\u2019s Rho", "StatLab/Corr/NP/Kendall\u2019s Tau", "StatLab/Reli/Cohen\u2019s Kappa", "StatLab/Reli/Fleiss\u2019s Kappa", "Std/CDISC/Library Resource", "Std/ISO/IDMP", "Std/ISO/PDF"], "titleterms": {"": [30, 31, 32, 33], "0": [23, 30, 31, 32, 33], "01": 17, "02": 17, "03": 17, "05": 17, "06": 17, "07": 17, "09": 17, "0909090909090909": 33, "1": [17, 21, 22, 23, 30, 31, 32, 33], "10": 17, "11": 17, "12": 17, "13": 17, "14": 17, "15": 17, "18": 17, "19": 17, "1960": 32, "2": [17, 22, 23, 32], "2012": 32, "2024": 17, "21": 17, "22": 17, "27": 17, "28": 17, "29": 17, "3": [17, 22, 23, 32], "30": 17, "39": 17, "4": [17, 22, 23], "42": 17, "43": 17, "48": 17, "5": [17, 22, 23], "50": 17, "6": 17, "7": 17, "7241379310344827": 32, "8": 17, "9": 17, "The": [22, 23], "access": 34, "across": 24, "algorithm": 31, "ani": 26, "api": 0, "appendix": 26, "assign": [24, 25, 26], "attribut": [2, 5, 12, 18], "background": [30, 31, 32, 33], "basic": 24, "bootstrap": 32, "bubbl": 32, "bug": 19, "categor": 20, "categori": 32, "catplott": 20, "cdisc": 34, "cdt": 13, "cdtg": 14, "changelog": 17, "ci": 32, "ciom": 27, "cite": 29, "class": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16], "clinic": [1, 21], "code": [18, 19], "cohen": 32, "comprehens": [22, 23], "conduct": [18, 19], "content": [1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 13, 14, 15, 16, 22, 23, 28, 29], "contribut": [19, 29], "corr": [6, 30, 31], "count": [32, 33], "credit": 29, "ct": 34, "ctoc": [22, 23], "databas": 35, "demo": 26, "detail": [30, 33], "differ": 24, "distribut": [24, 25], "document": 19, "ectd": [2, 22, 23], "ema": 35, "emt": 3, "enforc": 18, "eu": 35, "exampl": [21, 30, 31, 32, 33], "exercis": [31, 32, 33], "extens": 32, "fda": [22, 23, 26], "featur": 19, "feedback": 19, "file": 26, "find": [22, 23, 24, 25, 26], "fix": 19, "fleiss": 33, "fmq": 26, "folder": [24, 25, 28], "foundat": 34, "function": [5, 13, 15], "get": [19, 34], "given": [24, 25, 26], "graph": 20, "group": [21, 30, 31, 32, 33], "guidelin": 19, "h": [21, 22, 23, 24, 25, 26, 27], "head": [22, 23], "health": [1, 2, 3, 4], "hierarch": 24, "hierarchi": [22, 23], "how": [29, 30, 31, 32, 33], "ich": [22, 23, 24, 25, 26, 27], "idmp": 35, "implement": [19, 35], "instal": 29, "interpret": 32, "iso": [35, 36], "kappa": [8, 32, 33], "kendal": 31, "keyword": [22, 23], "lab": [31, 32, 33], "level": 24, "lib": 10, "librari": 34, "licens": 29, "list": [26, 28], "literatur": 32, "local": 26, "lsr": 16, "mchugh": 32, "meddra": [24, 25, 26, 27], "mlg": 27, "modul": [1, 2, 3, 6, 8, 10, 12, 13, 14, 16, 22, 23], "more": [30, 32, 33], "mtbp3": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 29], "notat": [30, 31, 32, 33], "np": [30, 31], "observ": [30, 31], "option": [24, 28], "other": [24, 28], "our": 18, "packag": [4, 5, 7, 15, 34], "path": 26, "pdf": 36, "pdfsummari": 12, "pledg": 18, "plot": [20, 32], "project": 35, "pt": 26, "pull": 19, "rate": 33, "refer": [0, 22, 23, 24, 25, 26, 27, 30, 31, 32, 33, 34, 35, 36], 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\ No newline at end of file
diff --git a/std_cdisc.html b/std_cdisc.html
index 751eafd5..891131fe 100644
--- a/std_cdisc.html
+++ b/std_cdisc.html
@@ -246,10 +246,11 @@ <h3>Get CT Packages<a class="headerlink" href="#get-ct-packages" title="Link to
 <span class="p">}</span>
 </pre></div>
 </div>
-<p>To get the newest protocol ct package information:</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">title</span> <span class="o">=</span> <span class="s1">&#39;Protocol&#39;</span>
-<span class="n">cl</span> <span class="o">=</span> <span class="n">accessLib</span><span class="p">(</span><span class="s2">&quot;/Users/yh2020/cdisc.txt&quot;</span><span class="p">)</span>
+<p>To get the newest Protocol CT package in DataFrame format:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">mtbp3.stdcdisc.lib</span> <span class="kn">import</span> <span class="n">accessLib</span>
+<span class="n">cl</span> <span class="o">=</span> <span class="n">accessLib</span><span class="p">(</span><span class="s2">&quot;/user/home/name/cdisc.txt&quot;</span><span class="p">)</span>
 <span class="n">cl</span><span class="o">.</span><span class="n">get_ct_list</span><span class="p">()</span>
+<span class="n">title</span> <span class="o">=</span> <span class="s1">&#39;Protocol&#39;</span>
 <span class="n">cl</span><span class="o">.</span><span class="n">get_ct_package</span><span class="p">(</span><span class="n">title</span><span class="p">)</span>
 <span class="n">cl</span><span class="o">.</span><span class="n">get_ct_codelists_df</span><span class="p">(</span><span class="n">title</span><span class="p">)</span>
 <span class="nb">print</span><span class="p">(</span><span class="n">cl</span><span class="o">.</span><span class="n">ct_package</span><span class="p">[</span><span class="n">title</span><span class="p">][</span><span class="s1">&#39;ct_df&#39;</span><span class="p">][[</span><span class="s1">&#39;conceptId&#39;</span><span class="p">,</span> <span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="s1">&#39;preferredTerm&#39;</span><span class="p">]]</span><span class="o">.</span><span class="n">head</span><span class="p">())</span>
@@ -264,6 +265,22 @@ <h3>Get CT Packages<a class="headerlink" href="#get-ct-packages" title="Link to
 <span class="mi">4</span>   <span class="n">C139020</span>      <span class="n">Clinical</span> <span class="n">Trial</span> <span class="n">Attribute</span> <span class="n">Terminology</span>  <span class="n">CDISC</span> <span class="n">Protocol</span> <span class="n">Entities</span> <span class="n">Clinical</span> <span class="n">Trial</span> <span class="n">Attribu</span><span class="o">...</span>
 </pre></div>
 </div>
+<p>To get the newest Glossary CT package in DataFrame format:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">title</span> <span class="o">=</span> <span class="s1">&#39;Glossary&#39;</span>
+<span class="n">cl</span><span class="o">.</span><span class="n">get_ct_package</span><span class="p">(</span><span class="n">title</span><span class="p">)</span>
+<span class="n">cl</span><span class="o">.</span><span class="n">get_ct_codelists_df</span><span class="p">(</span><span class="n">title</span><span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">cl</span><span class="o">.</span><span class="n">ct_package</span><span class="p">[</span><span class="n">title</span><span class="p">][</span><span class="s1">&#39;ct_df&#39;</span><span class="p">][[</span><span class="s1">&#39;conceptId&#39;</span><span class="p">,</span> <span class="s1">&#39;name&#39;</span><span class="p">,</span> <span class="s1">&#39;group&#39;</span><span class="p">,</span> <span class="s1">&#39;preferredTerm&#39;</span><span class="p">,</span> <span class="s1">&#39;definition&#39;</span><span class="p">]]</span><span class="o">.</span><span class="n">head</span><span class="p">())</span>
+</pre></div>
+</div>
+<p>Output:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>  <span class="n">conceptId</span>            <span class="n">name</span>           <span class="n">group</span>                  <span class="n">preferredTerm</span>                                         <span class="n">definition</span>
+<span class="mi">0</span>    <span class="n">C67497</span>  <span class="n">CDISC</span> <span class="n">Glossary</span>                     <span class="n">CDISC</span> <span class="n">Glossary</span> <span class="n">Terminology</span>  <span class="n">The</span> <span class="n">terminology</span> <span class="n">of</span> <span class="n">the</span> <span class="n">Clinical</span> <span class="n">Data</span> <span class="n">Interchan</span><span class="o">...</span>
+<span class="mi">1</span>    <span class="n">C80442</span>                  <span class="n">CDISC</span> <span class="n">Glossary</span>  <span class="n">Premarket</span> <span class="n">Device</span> <span class="n">Notification</span>  <span class="mi">510</span><span class="p">(</span><span class="n">k</span><span class="p">)</span><span class="o">.</span> <span class="n">Premarket</span> <span class="n">Notification</span> <span class="p">(</span><span class="n">PMN</span><span class="p">)</span> <span class="n">required</span> <span class="o">...</span>
+<span class="mi">2</span>    <span class="n">C42610</span>                  <span class="n">CDISC</span> <span class="n">Glossary</span>                   <span class="n">Abbreviation</span>  <span class="n">A</span> <span class="nb">set</span> <span class="n">of</span> <span class="n">letters</span> <span class="n">that</span> <span class="n">are</span> <span class="n">drawn</span> <span class="kn">from</span> <span class="nn">a</span> <span class="n">word</span> <span class="ow">or</span><span class="o">...</span>
+<span class="mi">3</span>    <span class="n">C71733</span>                  <span class="n">CDISC</span> <span class="n">Glossary</span>          <span class="n">Biological</span> <span class="n">Absorption</span>  <span class="n">The</span> <span class="n">process</span> <span class="n">by</span> <span class="n">which</span> <span class="n">medications</span> <span class="n">reach</span> <span class="n">the</span> <span class="n">blo</span><span class="o">...</span>
+<span class="mi">4</span>   <span class="n">C156638</span>                  <span class="n">CDISC</span> <span class="n">Glossary</span>           <span class="n">Accelerated</span> <span class="n">Approval</span>  <span class="n">Regulatory</span> <span class="n">mechanism</span> <span class="n">by</span> <span class="n">which</span> <span class="n">new</span> <span class="n">drugs</span> <span class="n">meant</span> <span class="o">...</span>
+</pre></div>
+</div>
 </section>
 </section>
 <section id="reference">
