diff --git a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
index 2e8263a8..4e364ed1 100644
--- a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
+++ b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
@@ -328,7 +328,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 18-Jul-2024 at 17:17:13 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 19-Jul-2024 at 17:40:40 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -429,7 +429,7 @@ <h2>Summary</h2>
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   </body>
   <footer>
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&#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;, &#34;duration&#34;: &#34;1 ms&#34;, 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&#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlgt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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&#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;, &#34;duration&#34;: &#34;25 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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diff --git a/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml b/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
index 73f097d0..dcd4ea09 100644
--- a/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
+++ b/_downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
@@ -1,5 +1,5 @@
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+<coverage version="7.6.0" timestamp="1721410850177" lines-valid="1494" lines-covered="642" line-rate="0.4297" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
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diff --git a/_sources/statlab_kappa2.rst.txt b/_sources/statlab_kappa2.rst.txt
index 876415ff..e831c44f 100644
--- a/_sources/statlab_kappa2.rst.txt
+++ b/_sources/statlab_kappa2.rst.txt
@@ -277,11 +277,19 @@ where
 and 
 
 .. math::
-  :label: eq_kappa2
+  :label: eq_kappa2_vn2
 
   var\left(\sum_{j} N_{ij}^2 \right) 
-  =& E\left(\sum_{j} N_{ij}^4\right) + E\left(\sum_j\sum_k N_{ij}^2 N_{ik}^2 \right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2 \\
-  =& 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right).
+  =& E\left( \left(\sum_{j} N_{ij}^2\right)^2\right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2 \\
+  =& E\left(\sum_{j} N_{ij}^4\right) + E\left(\sum_j\sum_{k \neq j} N_{ij}^2 N_{ik}^2 \right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2.
+
+
+:eq:`eq_kappa2_vn2` can be calculated as [2]_ :sup:`(Eq. 15)`
+
+.. math::
+
+  var\left(\sum_{j} N_{ij}^2 \right) 
+  =& 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right),
 
 *************
 Lab Exercise
diff --git a/_sources/std_cdisc.ipynb.txt b/_sources/std_cdisc.ipynb.txt
index 2dc5a30f..fe8f9a0f 100644
--- a/_sources/std_cdisc.ipynb.txt
+++ b/_sources/std_cdisc.ipynb.txt
@@ -124,9 +124,14 @@
             "cell_type": "markdown",
             "metadata": {},
             "source": [
-                "The connection requires personal key. \n",
-                "Therefore, this pages does not include test code demonstrations.\n",
-                "Please see API Reference for functions included in `stdcdisc.lib`."
+                "### Get CT Packages\n",
+                "\n",
+                "To get a list of newest CT packages available:\n",
+                "\n",
+                "```python\n",
+                "cl.get_ct_list()\n",
+                "print(cl.ct_list_titles)\n",
+                "```"
             ]
         },
         {
diff --git a/_static/reports/coverage/coverage.xml b/_static/reports/coverage/coverage.xml
index 73f097d0..dcd4ea09 100644
--- a/_static/reports/coverage/coverage.xml
+++ b/_static/reports/coverage/coverage.xml
@@ -1,5 +1,5 @@
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diff --git a/_static/reports/junit/junit.xml b/_static/reports/junit/junit.xml
index 48bf88da..5495a3b6 100644
--- a/_static/reports/junit/junit.xml
+++ b/_static/reports/junit/junit.xml
@@ -1 +1 @@
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\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="38" time="8.964" timestamp="2024-07-19T17:40:31.062208" hostname="fv-az883-876"><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_invalid_input" time="0.002" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_missing_column" time="0.002" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_with_difference" time="0.005" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_1df_without_difference" time="0.002" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_existing_column" time="0.010" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_non_existing_column" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_non_existing_group" time="0.001" /><testcase classname="tests.test_cdt.TestCdt" name="test_diff_2cols_in_2df_with_same_group_and_column" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words_invalid_include" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_find_section_given_words_invalid_outfmt" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_load_list" time="0.001" /><testcase classname="tests.test_health_ectd.TestCtocByFDA" name="test_show_ctoc_tree" time="0.202" /><testcase classname="tests.test_health_emt.TestEmt" name="test_expected_file_lists" time="0.005" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_files" time="0.005" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_hlgt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_hlt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_llt" time="0.008" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt_given_soc" time="0.007" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_pt_given_soc_primary_only" time="0.007" /><testcase classname="tests.test_health_emt.TestEmt" name="test_find_soc" time="0.004" /><testcase classname="tests.test_health_emt.TestEmt" name="test_list_files" time="0.026" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_dataframe" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_json" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_list" time="0.001" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_string" time="0.000" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_tree" time="0.014" /><testcase classname="tests.test_lsr.TestLsrTree" name="test_list_files_tree2" time="0.009" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_calculate_kendall_tau_with_dataframe" time="0.002" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_calculate_kendall_tau_with_list" time="0.002" /><testcase classname="tests.test_statlab_corr.TestCorrCalculator" name="test_plot_y_list" time="0.018" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_bootstrap_cohen_ci" time="0.236" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_cohen" time="0.071" /><testcase classname="tests.test_statlab_kappa.TestKappaCalculator" name="test_fleiss_kappa" time="0.071" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_compare_file_size" time="0.777" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_get_outline_list" time="0.926" /><testcase classname="tests.test_stdiso_pdfsummary.TestPdfSummary" name="test_show_outline_tree" time="0.855" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/_static/reports/junit/report.html b/_static/reports/junit/report.html
index 2e8263a8..4e364ed1 100644
--- a/_static/reports/junit/report.html
+++ b/_static/reports/junit/report.html
@@ -328,7 +328,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 18-Jul-2024 at 17:17:13 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 19-Jul-2024 at 17:40:40 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -429,7 +429,7 @@ <h2>Summary</h2>
     </table>
   </body>
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class=\&#34;col-duration\&#34;&gt;236 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&#34;, &#34;duration&#34;: &#34;71 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_statlab_kappa.py::TestKappaCalculator::test_cohen&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;71 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_statlab_kappa.py::TestKappaCalculator::test_fleiss_kappa&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: 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class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;777 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;, &#34;duration&#34;: &#34;926 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;926 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;, &#34;duration&#34;: &#34;855 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;855 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
     <script>
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 const { getCollapsedCategory, setCollapsedIds } = require('./storage.js')
diff --git a/example_cdtg.html b/example_cdtg.html
index f4229b5e..3d242c1a 100644
--- a/example_cdtg.html
+++ b/example_cdtg.html
@@ -133,7 +133,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="_images/9d09cb6faf2b296604203697d5dc338374e9885fd9d57fbbd440268a5f0c8ade.png" src="_images/9d09cb6faf2b296604203697d5dc338374e9885fd9d57fbbd440268a5f0c8ade.png" />
+<img alt="_images/f3002788b186396814f829242835a3a845acaf96c4efdd948a22c5baf25dc495.png" src="_images/f3002788b186396814f829242835a3a845acaf96c4efdd948a22c5baf25dc495.png" />
 </div>
 </div>
 <p>To create a line plot:</p>
@@ -145,7 +145,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="_images/d998a589c240d64fdb44e3e809ed77a5755919c33257cfb01c24ed50373a473c.png" src="_images/d998a589c240d64fdb44e3e809ed77a5755919c33257cfb01c24ed50373a473c.png" />
+<img alt="_images/b970724bd86e53fdab86a5e64b3d4dd18cd362cd3c04fe49b5e93a7aa1bc77c3.png" src="_images/b970724bd86e53fdab86a5e64b3d4dd18cd362cd3c04fe49b5e93a7aa1bc77c3.png" />
 </div>
 </div>
 </section>
diff --git a/example_clinical.html b/example_clinical.html
index 20d0a344..78f83b46 100644
--- a/example_clinical.html
+++ b/example_clinical.html
@@ -131,8 +131,8 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  meal  calorie
-0  STD1      TRT1  SUBJ01  VISIT1     1     1371
-1  STD1      TRT1  SUBJ01  VISIT1     2      810
+0  STD1      TRT1  SUBJ01  VISIT1     1     1319
+1  STD1      TRT1  SUBJ01  VISIT1     2     1432
 </pre></div>
 </div>
 </div>
@@ -149,12 +149,12 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  N(0&lt;=X&lt;500)  N(500&lt;=X&lt;1000)  \
-0  STD1      TRT1  SUBJ01  VISIT1            0               2   
+0  STD1      TRT1  SUBJ01  VISIT1            0               1   
 1  STD1      TRT1  SUBJ01  VISIT2            0               0   
 
    N(1000&lt;=V&lt;=2000)  N(all)  
-0                 1       3  
-1                 3       3  
+0                 4       5  
+1                 2       2  
 </pre></div>
 </div>
 </div>
@@ -169,22 +169,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  N(0&lt;=X&lt;3)  N(3&lt;=X&lt;5)  N(5&lt;=V&lt;=7)  N(all)
-0   STD1      TRT1  VISIT1          4         12           4      20
-1   STD1      TRT1  VISIT2          4          7           4      15
-2   STD1      TRT1  VISIT3          6          5           2      13
-3   STD1      TRT1  VISIT4          3          3           2       8
-4   STD1      TRT2  VISIT1          5         11           4      20
-5   STD1      TRT2  VISIT2          5          6           3      14
-6   STD1      TRT2  VISIT3          2          5           2       9
-7   STD1      TRT2  VISIT4          0          3           1       4
-8   STD2      TRT1  VISIT1          6         10           4      20
-9   STD2      TRT1  VISIT2          6          5           4      15
-10  STD2      TRT1  VISIT3          1          5           2       8
-11  STD2      TRT1  VISIT4          1          2           0       3
-12  STD2      TRT2  VISIT1          6          6           8      20
-13  STD2      TRT2  VISIT2          4         11           3      18
-14  STD2      TRT2  VISIT3          6          5           6      17
-15  STD2      TRT2  VISIT4          0          3           2       5
+0   STD1      TRT1  VISIT1          9          9           2      20
+1   STD1      TRT1  VISIT2          3          8           8      19
+2   STD1      TRT1  VISIT3          8          5           1      14
+3   STD1      TRT1  VISIT4          2          3           3       8
+4   STD1      TRT2  VISIT1          5          7           8      20
+5   STD1      TRT2  VISIT2          5          4           3      12
+6   STD1      TRT2  VISIT3          1          5           0       6
+7   STD1      TRT2  VISIT4          2          0           1       3
+8   STD2      TRT1  VISIT1          5         12           3      20
+9   STD2      TRT1  VISIT2          6          4           5      15
+10  STD2      TRT1  VISIT3          5          3           1       9
+11  STD2      TRT1  VISIT4          0          2           1       3
+12  STD2      TRT2  VISIT1          5          6           9      20
+13  STD2      TRT2  VISIT2          3         12           3      18
+14  STD2      TRT2  VISIT3          2          5           4      11
+15  STD2      TRT2  VISIT4          1          3           1       5
 </pre></div>
 </div>
 </div>
@@ -198,22 +198,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  Sum(0&lt;=X&lt;3)  Sum(3&lt;=X&lt;5)  Sum(5&lt;=V&lt;=7)  Sum(all)
-0   STD1      TRT1  VISIT1            8           42            20        70
-1   STD1      TRT1  VISIT2            8           24            20        52
-2   STD1      TRT1  VISIT3           12           18            10        40
-3   STD1      TRT1  VISIT4            6           10            10        26
-4   STD1      TRT2  VISIT1           10           34            20        64
-5   STD1      TRT2  VISIT2           10           23            15        48
-6   STD1      TRT2  VISIT3            4           16            10        30
-7   STD1      TRT2  VISIT4            0           10             5        15
-8   STD2      TRT1  VISIT1           12           34            20        66
-9   STD2      TRT1  VISIT2           12           17            20        49
-10  STD2      TRT1  VISIT3            2           17            10        29
-11  STD2      TRT1  VISIT4            2            7             0         9
-12  STD2      TRT2  VISIT1           12           23            40        75
-13  STD2      TRT2  VISIT2            8           39            15        62
-14  STD2      TRT2  VISIT3           12           18            30        60
-15  STD2      TRT2  VISIT4            0           10            10        20
+0   STD1      TRT1  VISIT1           18           30            10        58
+1   STD1      TRT1  VISIT2            6           30            40        76
+2   STD1      TRT1  VISIT3           16           17             5        38
+3   STD1      TRT1  VISIT4            4           10            15        29
+4   STD1      TRT2  VISIT1           10           25            40        75
+5   STD1      TRT2  VISIT2           10           15            15        40
+6   STD1      TRT2  VISIT3            2           18             0        20
+7   STD1      TRT2  VISIT4            4            0             5         9
+8   STD2      TRT1  VISIT1           10           41            15        66
+9   STD2      TRT1  VISIT2           12           15            25        52
+10  STD2      TRT1  VISIT3           10           11             5        26
+11  STD2      TRT1  VISIT4            0            8             5        13
+12  STD2      TRT2  VISIT1           10           21            45        76
+13  STD2      TRT2  VISIT2            6           42            15        63
+14  STD2      TRT2  VISIT3            4           18            20        42
+15  STD2      TRT2  VISIT4            2            9             5        16
 </pre></div>
 </div>
 </div>
diff --git a/example_ectd2.html b/example_ectd2.html
index 67072e3a..8e987109 100644
--- a/example_ectd2.html
+++ b/example_ectd2.html
@@ -598,9 +598,6 @@ <h2>Module 4<a class="headerlink" href="#module-4" title="Link to this heading">
     └── 4.3 Literature references
 </pre></div>
 </div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
-</pre></div>
-</div>
 </div>
 </div>
 </section>
@@ -788,9 +785,6 @@ <h2>Module 5<a class="headerlink" href="#module-5" title="Link to this heading">
     └── 5.4 Literature references
 </pre></div>
 </div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
-</pre></div>
-</div>
 </div>
 </div>
 </section>
diff --git a/example_emt3.html b/example_emt3.html
index 895685dc..16cb9aa1 100644
--- a/example_emt3.html
+++ b/example_emt3.html
@@ -281,6 +281,9 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
             └── [PT28] Vaginal haemorrhage
 </pre></div>
 </div>
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
+</pre></div>
+</div>
 </div>
 </div>
 <p>To list PT under selected FMQs by classification and SOC:</p>
@@ -295,91 +298,91 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
     ├── Abdominal Pain:
     │   ├── [Classification] Broad:
     │   │   ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-    │   │   │   ├── [PT01] Gastritis erosive
-    │   │   │   ├── [PT02] Gastro-enterostomy
-    │   │   │   ├── [PT03] Haemorrhagic erosive gastritis
-    │   │   │   ├── [PT04] Infantile colic
-    │   │   │   ├── [PT05] Large intestine infection
-    │   │   │   └── [PT06] Visceral pain
+    │   │   │   ├── [PT01] Carnett&#39;s sign positive
+    │   │   │   ├── [PT02] Helicobacter duodenal ulcer
+    │   │   │   ├── [PT03] Large intestine infection
+    │   │   │   ├── [PT04] Ulcerative duodenitis
+    │   │   │   └── [PT05] Segmental arterial mediolysis
     │   │   ├── [SOC] soc360phgmkaCxrALPg:
-    │   │   │   ├── [PT07] Gastroenteritis escherichia coli
-    │   │   │   ├── [PT08] Ulcerative duodenitis
-    │   │   │   ├── [PT09] CRIA syndrome
-    │   │   │   └── [PT10] Yao syndrome
+    │   │   │   ├── [PT06] Complicated appendicitis
+    │   │   │   ├── [PT07] Gastritis erosive
+    │   │   │   ├── [PT08] Gastroenterostomy
+    │   │   │   ├── [PT09] Haemorrhagic erosive gastritis
+    │   │   │   ├── [PT10] Peptic ulcer
+    │   │   │   ├── [PT11] CRIA syndrome
+    │   │   │   └── [PT12] Peritoneoplasty
     │   │   └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-    │   │       ├── [PT11] Carnett&#39;s sign positive
-    │   │       ├── [PT12] Complicated appendicitis
     │   │       ├── [PT13] Gastric irritation
-    │   │       ├── [PT14] Gastroenteritis Escherichia coli
-    │   │       ├── [PT15] Gastroenterostomy
-    │   │       ├── [PT16] Helicobacter duodenal ulcer
-    │   │       ├── [PT17] Peptic ulcer
-    │   │       ├── [PT18] Bauhin&#39;s valve syndrome
-    │   │       ├── [PT19] Peritoneoplasty
-    │   │       └── [PT20] Segmental arterial mediolysis
+    │   │       ├── [PT14] Gastroenteritis escherichia coli
+    │   │       ├── [PT15] Gastroenteritis Escherichia coli
+    │   │       ├── [PT16] Gastro-enterostomy
+    │   │       ├── [PT17] Infantile colic
+    │   │       ├── [PT18] Visceral pain
+    │   │       ├── [PT19] Bauhin&#39;s valve syndrome
+    │   │       └── [PT20] Yao syndrome
     │   └── [Classification] Narrow:
     │       ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-    │       │   ├── [PT21] Abdominal discomfort
-    │       │   ├── [PT22] Abdominal migraine
-    │       │   ├── [PT23] Abdominal pain
-    │       │   ├── [PT24] Abdominal pain aggravated
-    │       │   ├── [PT25] Abdominal pain NOS
-    │       │   ├── [PT26] Abdominal pain upper
-    │       │   ├── [PT27] Enteric neuropathy
+    │       │   ├── [PT21] Abdominal pain
+    │       │   ├── [PT22] Abdominal pain lower
+    │       │   ├── [PT23] Abdominal pain NOS
+    │       │   ├── [PT24] Acute abdomen
+    │       │   ├── [PT25] Epigastric discomfort
+    │       │   ├── [PT26] Gastrointestinal discomfort
+    │       │   ├── [PT27] Gastrointestinal pain NOS
     │       │   ├── [PT28] Intestinal spasm
-    │       │   └── [PT29] Ulcer type pain
+    │       │   ├── [PT29] Spleen pain
+    │       │   ├── [PT30] Ulcer type pain
+    │       │   └── [PT31] Ilioinguinal neuralgia
     │       ├── [SOC] soc360phgmkaCxrALPg:
-    │       │   ├── [PT30] Abdominal pain lower
-    │       │   ├── [PT31] Abdominal rebound tenderness
-    │       │   ├── [PT32] Abdominal rigidity
-    │       │   ├── [PT33] Acute abdomen
-    │       │   ├── [PT34] Epigastric discomfort
-    │       │   ├── [PT35] Gastrointestinal discomfort
-    │       │   ├── [PT36] Gastrointestinal pain
-    │       │   ├── [PT37] Gastrointestinal pain NOS
-    │       │   ├── [PT38] Stomach discomfort
-    │       │   └── [PT39] Ilioinguinal neuralgia
+    │       │   ├── [PT32] Abdominal discomfort
+    │       │   ├── [PT33] Abdominal rebound tenderness
+    │       │   ├── [PT34] Abdominal rigidity
+    │       │   ├── [PT35] Abdominal tenderness
+    │       │   ├── [PT36] Enteric neuropathy
+    │       │   ├── [PT37] Gastrointestinal pain
+    │       │   └── [PT38] Stomach discomfort
     │       └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-    │           ├── [PT40] Abdominal tenderness
-    │           ├── [PT41] Gastrointestinal upset
-    │           ├── [PT42] Perihepatic discomfort
-    │           └── [PT43] Spleen pain
+    │           ├── [PT39] Abdominal migraine
+    │           ├── [PT40] Abdominal pain aggravated
+    │           ├── [PT41] Abdominal pain upper
+    │           ├── [PT42] Gastrointestinal upset
+    │           └── [PT43] Perihepatic discomfort
     └── Abnormal Uterine Bleeding:
         ├── [Classification] Broad:
         │   ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-        │   │   └── [PT01] Dysmenorrhea
+        │   │   ├── [PT01] Anovulatory cycle
+        │   │   ├── [PT02] Dysmenorrhea
+        │   │   └── [PT03] Follicle-stimulating hormone deficiency
         │   ├── [SOC] soc360phgmkaCxrALPg:
-        │   │   ├── [PT02] Anovulatory cycle
-        │   │   ├── [PT03] Dysmenorrhoea
-        │   │   ├── [PT04] Follicle-stimulating hormone deficiency
-        │   │   └── [PT05] Follicle stimulating hormone deficiency
+        │   │   ├── [PT04] Dysmenorrhoea
+        │   │   ├── [PT05] Follicle stimulating hormone deficiency
+        │   │   └── [PT06] Ovarian dysfunction
         │   └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-        │       ├── [PT06] Bleeding anovulatory
-        │       ├── [PT07] Menstrual disorder
-        │       ├── [PT08] Uterine dehiscence
-        │       └── [PT09] Ovarian dysfunction
+        │       ├── [PT07] Bleeding anovulatory
+        │       ├── [PT08] Menstrual disorder
+        │       └── [PT09] Uterine dehiscence
         └── [Classification] Narrow:
             ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
             │   ├── [PT10] Abnormal uterine bleeding
-            │   ├── [PT11] Abnormal withdrawal bleeding
-            │   ├── [PT12] Heavy menstrual bleeding
-            │   ├── [PT13] Polymenorrhagia
-            │   ├── [PT14] Postmenopausal haemorrhage
-            │   └── [PT15] Uterine rupture
+            │   ├── [PT11] Dysfunctional uterine bleeding
+            │   ├── [PT12] Menometrorrhagia
+            │   ├── [PT13] Menstruation delayed
+            │   ├── [PT14] Metrorrhagia
+            │   └── [PT15] Polymenorrhoea
             ├── [SOC] soc360phgmkaCxrALPg:
-            │   ├── [PT16] Dysfunctional uterine bleeding
-            │   ├── [PT17] Hypomenorrhoea
-            │   ├── [PT18] Intermenstrual bleeding
-            │   ├── [PT19] Menometrorrhagia
-            │   ├── [PT20] Menstruation delayed
-            │   ├── [PT21] Menstruation irregular
-            │   ├── [PT22] Metrorrhagia
-            │   └── [PT23] Polymenorrhoea
+            │   ├── [PT16] Abnormal withdrawal bleeding
+            │   ├── [PT17] Cervix haemorrhage uterine
+            │   ├── [PT18] Hypomenorrhoea
+            │   ├── [PT19] Menstruation irregular
+            │   ├── [PT20] Oligomenorrhoea
+            │   ├── [PT21] Polymenorrhagia
+            │   └── [PT22] Uterine haemorrhage
             └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-                ├── [PT24] Cervix haemorrhage uterine
+                ├── [PT23] Heavy menstrual bleeding
+                ├── [PT24] Intermenstrual bleeding
                 ├── [PT25] Menorrhagia
-                ├── [PT26] Oligomenorrhoea
-                ├── [PT27] Uterine haemorrhage
+                ├── [PT26] Postmenopausal haemorrhage
+                ├── [PT27] Uterine rupture
                 └── [PT28] Vaginal haemorrhage
 </pre></div>
 </div>
@@ -404,96 +407,94 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
                                             Abdominal Pain ──┤    
                                 Broad [Classification] ──┤   │    
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤   │   │    
-                     Gastric irritation [PT01] ──┤   │   │   │    
-                     Gastro-enterostomy [PT02] ──┤   │   │   │    
-                        Infantile colic [PT03] ──┤   │   │   │    
-                        Peritoneoplasty [PT06] ──┤   │   │   │    
-                  Ulcerative duodenitis [PT04] ──┤   │   │   │    
-                           Yao syndrome [PT05] ──┘   │   │   │    
+       Gastroenteritis Escherichia coli [PT01] ──┤   │   │   │    
+                      Gastroenterostomy [PT02] ──┤   │   │   │    
+                           Peptic ulcer [PT03] ──┘   │   │   │    
                          soc360phgmkaCxrALPg [SOC] ──┤   │   │    
-                Bauhin&#39;s valve syndrome [PT12] ──┤   │   │   │    
-                Carnett&#39;s sign positive [PT07] ──┤   │   │   │    
-       Gastroenteritis escherichia coli [PT08] ──┤   │   │   │    
-            Helicobacter duodenal ulcer [PT09] ──┤   │   │   │    
-              Large intestine infection [PT10] ──┤   │   │   │    
-                          Visceral pain [PT11] ──┘   │   │   │    
+               Complicated appendicitis [PT04] ──┤   │   │   │    
+                     Gastric irritation [PT05] ──┤   │   │   │    
+         Haemorrhagic erosive gastritis [PT06] ──┤   │   │   │    
+            Helicobacter duodenal ulcer [PT07] ──┤   │   │   │    
+                        Infantile colic [PT08] ──┤   │   │   │    
+              Large intestine infection [PT09] ──┤   │   │   │    
+          Segmental arterial mediolysis [PT11] ──┤   │   │   │    
+                          Visceral pain [PT10] ──┘   │   │   │    
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘   │   │    
-                          CRIA syndrome [PT19] ──┤       │   │    
-               Complicated appendicitis [PT13] ──┤       │   │    
-                      Gastritis erosive [PT14] ──┤       │   │    
-       Gastroenteritis Escherichia coli [PT15] ──┤       │   │    
-                      Gastroenterostomy [PT16] ──┤       │   │    
-         Haemorrhagic erosive gastritis [PT17] ──┤       │   │    
-                           Peptic ulcer [PT18] ──┤       │   │    
-          Segmental arterial mediolysis [PT20] ──┘       │   │    
+                Bauhin&#39;s valve syndrome [PT18] ──┤       │   │    
+                          CRIA syndrome [PT17] ──┤       │   │    
+                Carnett&#39;s sign positive [PT12] ──┤       │   │    
+                      Gastritis erosive [PT13] ──┤       │   │    
+                     Gastro-enterostomy [PT15] ──┤       │   │    
+       Gastroenteritis escherichia coli [PT14] ──┤       │   │    
+                        Peritoneoplasty [PT20] ──┤       │   │    
+                  Ulcerative duodenitis [PT16] ──┤       │   │    
+                           Yao syndrome [PT19] ──┘       │   │    
                                Narrow [Classification] ──┘   │    
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤       │    
-                         Abdominal pain [PT21] ──┤   │       │    
-                   Abdominal pain lower [PT22] ──┤   │       │    
-           Abdominal rebound tenderness [PT23] ──┤   │       │    
-                   Abdominal tenderness [PT24] ──┤   │       │    
-              Gastrointestinal pain NOS [PT25] ──┤   │       │    
-                 Gastrointestinal upset [PT26] ──┤   │       │    
-                 Ilioinguinal neuralgia [PT29] ──┤   │       │    
-                 Perihepatic discomfort [PT27] ──┤   │       │    
-                            Spleen pain [PT28] ──┘   │       │    
+              Abdominal pain aggravated [PT21] ──┤   │       │    
+                  Epigastric discomfort [PT22] ──┤   │       │    
+            Gastrointestinal discomfort [PT23] ──┤   │       │    
+                  Gastrointestinal pain [PT24] ──┤   │       │    
+                 Ilioinguinal neuralgia [PT27] ──┤   │       │    
+                            Spleen pain [PT25] ──┤   │       │    
+                     Stomach discomfort [PT26] ──┘   │       │    
                          soc360phgmkaCxrALPg [SOC] ──┤       │    
-                   Abdominal discomfort [PT30] ──┤   │       │    
-                   Abdominal pain upper [PT31] ──┤   │       │    
-                     Abdominal rigidity [PT32] ──┤   │       │    
-                          Acute abdomen [PT33] ──┤   │       │    
-                     Enteric neuropathy [PT34] ──┤   │       │    
-                  Epigastric discomfort [PT35] ──┤   │       │    
-            Gastrointestinal discomfort [PT36] ──┤   │       │    
-                  Gastrointestinal pain [PT37] ──┤   │       │    
-                       Intestinal spasm [PT38] ──┤   │       │    
-                        Ulcer type pain [PT39] ──┘   │       │    
+                     Abdominal migraine [PT28] ──┤   │       │    
+                   Abdominal pain lower [PT29] ──┤   │       │    
+           Abdominal rebound tenderness [PT30] ──┤   │       │    
+                   Abdominal tenderness [PT31] ──┤   │       │    
+                     Enteric neuropathy [PT32] ──┤   │       │    
+                       Intestinal spasm [PT33] ──┘   │       │    
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘       │    
-                     Abdominal migraine [PT40] ──┤           │    
-                     Abdominal pain NOS [PT42] ──┤           │    
-              Abdominal pain aggravated [PT41] ──┤           │    
-                     Stomach discomfort [PT43] ──┘           │    
+                   Abdominal discomfort [PT34] ──┤           │    
+                     Abdominal pain NOS [PT36] ──┤           │    
+                         Abdominal pain [PT35] ──┤           │    
+                   Abdominal pain upper [PT37] ──┤           │    
+                     Abdominal rigidity [PT38] ──┤           │    
+                          Acute abdomen [PT39] ──┤           │    
+              Gastrointestinal pain NOS [PT40] ──┤           │    
+                 Gastrointestinal upset [PT41] ──┤           │    
+                 Perihepatic discomfort [PT42] ──┤           │    
+                        Ulcer type pain [PT43] ──┘           │    
                                  Abnormal Uterine Bleeding ──┘    
                                 Broad [Classification] ──┤        
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤   │        
                       Anovulatory cycle [PT01] ──┤   │   │        
-                          Dysmenorrhoea [PT02] ──┤   │   │        
+                           Dysmenorrhea [PT02] ──┤   │   │        
+Follicle-stimulating hormone deficiency [PT03] ──┘   │   │        
+                         soc360phgmkaCxrALPg [SOC] ──┤   │        
 Follicle stimulating hormone deficiency [PT04] ──┤   │   │        
-Follicle-stimulating hormone deficiency [PT03] ──┤   │   │        
-                     Menstrual disorder [PT05] ──┤   │   │        
-                     Uterine dehiscence [PT06] ──┘   │   │        
+                    Ovarian dysfunction [PT06] ──┤   │   │        
+                     Uterine dehiscence [PT05] ──┘   │   │        
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘   │        
                    Bleeding anovulatory [PT07] ──┤       │        
-                           Dysmenorrhea [PT08] ──┤       │        
-                    Ovarian dysfunction [PT09] ──┘       │        
+                          Dysmenorrhoea [PT08] ──┤       │        
+                     Menstrual disorder [PT09] ──┘       │        
                                Narrow [Classification] ──┘        
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤            
-           Abnormal withdrawal bleeding [PT10] ──┤   │            
-                         Hypomenorrhoea [PT11] ──┤   │            
-                       Menometrorrhagia [PT12] ──┤   │            
-                        Polymenorrhagia [PT13] ──┤   │            
-                    Vaginal haemorrhage [PT14] ──┘   │            
+             Cervix haemorrhage uterine [PT10] ──┤   │            
+               Heavy menstrual bleeding [PT11] ──┤   │            
+                            Menorrhagia [PT12] ──┤   │            
+                           Metrorrhagia [PT13] ──┤   │            
+             Postmenopausal haemorrhage [PT14] ──┤   │            
+                    Vaginal haemorrhage [PT15] ──┘   │            
                          soc360phgmkaCxrALPg [SOC] ──┤            
-         Dysfunctional uterine bleeding [PT15] ──┤   │            
-                Intermenstrual bleeding [PT16] ──┤   │            
-                   Menstruation delayed [PT17] ──┤   │            
-                        Oligomenorrhoea [PT18] ──┤   │            
-                         Polymenorrhoea [PT19] ──┤   │            
-             Postmenopausal haemorrhage [PT20] ──┤   │            
-                        Uterine rupture [PT21] ──┘   │            
+           Abnormal withdrawal bleeding [PT16] ──┤   │            
+         Dysfunctional uterine bleeding [PT17] ──┤   │            
+                         Hypomenorrhoea [PT18] ──┤   │            
+                   Menstruation delayed [PT19] ──┤   │            
+                        Oligomenorrhoea [PT20] ──┤   │            
+                        Polymenorrhagia [PT21] ──┤   │            
+                         Polymenorrhoea [PT22] ──┤   │            
+                        Uterine rupture [PT23] ──┘   │            
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘            
-              Abnormal uterine bleeding [PT22] ──┤                
-             Cervix haemorrhage uterine [PT23] ──┤                
-               Heavy menstrual bleeding [PT24] ──┤                
-                            Menorrhagia [PT25] ──┤                
-                 Menstruation irregular [PT26] ──┤                
-                           Metrorrhagia [PT27] ──┤                
+              Abnormal uterine bleeding [PT24] ──┤                
+                Intermenstrual bleeding [PT25] ──┤                
+                       Menometrorrhagia [PT26] ──┤                
+                 Menstruation irregular [PT27] ──┤                
                     Uterine haemorrhage [PT28] ──┘                
 </pre></div>
 </div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
-</pre></div>
-</div>
 </div>
 </div>
 </section>
diff --git a/example_files.html b/example_files.html
index 8329c22c..7bcf4fd9 100644
--- a/example_files.html
+++ b/example_files.html
@@ -153,7 +153,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_70/
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_25/
 ├── subfolder1/
 └── subfolder2/
     └── testfile3
@@ -170,7 +170,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_70/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_25/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
 ├── subfolder1/  &lt;&lt;&lt;((( Empty Folder )))&gt;&gt;&gt;
 └── subfolder2/  &lt;&lt;&lt;((( F=1; D=0 )))&gt;&gt;&gt;
     └── testfile3
@@ -193,7 +193,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 
                    modified                   created  file_type N_page  \
 0                      None                      None       None   None   
-1  Thu Jul 18 17:17:53 2024  Thu Jul 18 17:17:53 2024  testfile3   None   
+1  Fri Jul 19 17:41:23 2024  Fri Jul 19 17:41:23 2024  testfile3   None   
 
   N_column N_row  
 0     None  None  
diff --git a/searchindex.js b/searchindex.js
index 17f4158b..cee26819 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"API Reference": [[0, null]], "Algorithm - 1": [[31, "algorithm-1"]], "Appendix - View PTs Given Any FMQ": [[26, "appendix-view-pts-given-any-fmq"]], "Assign FMQ File Path": [[26, "assign-fmq-file-path"]], "Assign MedDRA Distribution Folder": [[24, "assign-meddra-distribution-folder"], [25, "assign-meddra-distribution-folder"]], "Attributes": [[2, "attributes"], [5, "attributes"], [10, "attributes"], [12, "attributes"]], "Attribution": [[18, "attribution"]], "Background": [[30, "background"], [31, "background"], [32, "background"], [33, "background"]], "Bootstrap CI": [[32, "bootstrap-ci"]], "Bubble Plot": [[32, "bubble-plot"]], "CDISC Foundational Standards": [[34, "cdisc-foundational-standards"]], "CDISC Library Resource": [[34, "cdisc-library-resource"]], "Changelog": [[17, null]], "Classes": [[1, "classes"], [2, "classes"], [3, "classes"], [4, "classes"], [5, "classes"], [6, "classes"], [7, "classes"], [8, "classes"], [10, "classes"], [12, "classes"], [13, "classes"], [14, "classes"], [15, "classes"], [16, "classes"]], "Code of Conduct": [[18, null], [19, "code-of-conduct"]], "Cohen\u2019s Kappa Interpretation (Cohen, 1960)": [[32, "id21"]], "Cohen\u2019s Kappa Interpretation (McHugh, 2012)": [[32, "id22"]], "Cohen\u2019s \\kappa = -0.7241379310344827": [[32, "id28"]], "Cohen\u2019s \\kappa = -1": [[32, "id27"]], "Cohen\u2019s \\kappa = 0": [[32, "id23"], [32, "id24"]], "Cohen\u2019s \\kappa = 1": [[32, "id25"], [32, "id26"]], "Contributing": [[19, null], [29, "contributing"]], "Count of Ratings": [[33, "tbl-count1"]], "Counts for 2 categories": [[32, "id19"]], "Counts for 3 or more categories": [[32, "id20"]], "Credits": [[29, "credits"]], "EMA Implementation of IDMP": [[35, "ema-implementation-of-idmp"]], "EU Database - xEVMPD": [[35, "eu-database-xevmpd"]], "Enforcement": [[18, "enforcement"]], "Example - Group-1": [[30, "example-group-1"], [31, "example-group-1"], [32, "example-group-1"], [33, "example-group-1"]], "Example 1": [[21, "example-1"]], "Extensions": [[32, "extensions"]], "FMQ Tree": [[26, "fmq-tree"]], "Find MedDRA Terms Across Different Hierarchical Levels": [[24, "find-meddra-terms-across-different-hierarchical-levels"]], "Find MedDRA Terms Given a SMQ": [[25, "find-meddra-terms-given-a-smq"]], "Find MedDRA Terms Within a Given Hierarchical Level": [[24, "find-meddra-terms-within-a-given-hierarchical-level"]], "Find SMQ Terms": [[25, "find-smq-terms"]], "Find Sections Using Keywords": [[22, "find-sections-using-keywords"], [23, "find-sections-using-keywords"]], "Find Terms Given a FMQ": [[26, "find-terms-given-a-fmq"]], "Fix Bugs": [[19, "fix-bugs"]], "Fleiss\u2019s \\kappa = -0.0909090909090909": [[33, "id8"]], "Fleiss\u2019s \\kappa = 1.0": [[33, "id7"]], "Functions": [[5, "functions"], [13, "functions"], [15, "functions"]], "Get Started!": [[19, "get-started"]], "H/Clinical/Grouped Summary": [[21, null]], "H/ICH/MedDRA/(MLGs by CIOMS)": [[27, null]], "H/ICH/MedDRA/Basics": [[24, null]], "H/ICH/MedDRA/FMQs by FDA": [[26, null]], "H/ICH/MedDRA/SMQs by ICH": [[25, null]], "H/ICH/eCTD/US/3.2/Heading": [[22, null]], "H/ICH/eCTD/US/4.0/Heading": [[23, null]], "How to Cite": [[29, "how-to-cite"]], "How-to": [[30, "how-to"], [31, "how-to"], [31, "id5"], [32, "how-to"], [33, "how-to"]], "Implement Features": [[19, "implement-features"]], "Installation": [[29, "installation"]], "Interpretation of Cohen\u2019s Kappa Suggested in Literature": [[32, "interpretation-of-cohen-s-kappa-suggested-in-literature"]], "Kendall\u2019s \\tau = -1.0": [[31, "id3"]], "Kendall\u2019s \\tau = 1.0": [[31, "tbl-ex1"]], "Lab Exercise": [[31, "lab-exercise"], [32, "lab-exercise"], [33, "lab-exercise"], [33, "id4"]], "License": [[29, "license"]], "Module 1": [[22, "module-1"], [23, "module-1"]], "Module 2": [[22, "module-2"], [23, "module-2"]], "Module 3": [[22, "module-3"], [23, "module-3"]], "Module 4": [[22, "module-4"], [23, "module-4"]], "Module 5": [[22, "module-5"], [23, "module-5"]], "Module Contents": [[1, "module-contents"], [2, "module-contents"], [3, "module-contents"], [6, "module-contents"], [8, "module-contents"], [10, "module-contents"], [12, "module-contents"], [13, "module-contents"], [14, "module-contents"], [16, "module-contents"]], "More Details": [[30, "more-details"], [33, "more-details"]], "Notation": [[30, "notation"], [31, "notation"], [32, "notation"], [33, "notation"]], "Observed Value": [[30, "tbl-count1"], [31, "tbl-count1"]], "Other Options": [[24, "other-options"], [28, "other-options"]], "Our Pledge": [[18, "our-pledge"]], "Our Responsibilities": [[18, "our-responsibilities"]], "Our Standards": [[18, "our-standards"]], "Package Contents": [[4, "package-contents"], [5, "package-contents"], [7, "package-contents"], [15, "package-contents"]], "Pull Request Guidelines": [[19, "pull-request-guidelines"]], "Reference": [[22, "reference"], [23, "reference"], [24, "reference"], [25, "reference"], [26, "reference"], [27, "reference"], [30, 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\ No newline at end of file
diff --git a/statlab_kappa2.html b/statlab_kappa2.html
index 0414d013..8b2fdcfe 100644
--- a/statlab_kappa2.html
+++ b/statlab_kappa2.html
@@ -69,7 +69,7 @@
 <li class="toctree-l2"><a class="reference internal" href="#how-to">How-to</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#lab-exercise">Lab Exercise</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#more-details">More Details</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#id4">Lab Exercise</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#id5">Lab Exercise</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#reference">Reference</a></li>
 </ul>
 </li>
@@ -112,7 +112,7 @@ <h1>StatLab/Fleiss’s Kappa<a class="headerlink" href="#statlab-fleiss-s-kappa"
 <section id="background">
 <h2>Background<a class="headerlink" href="#background" title="Link to this heading"></a></h2>
 <p>Fleiss’s kappa (<span class="math notranslate nohighlight">\(\kappa\)</span>) is a statistic used for describing inter-rater reliability of multiple independent raters
-with categorical rating outcomes <a class="footnote-reference brackets" href="#id5" id="id1" role="doc-noteref"><span class="fn-bracket">[</span>1<span class="fn-bracket">]</span></a> <a class="footnote-reference brackets" href="#id6" id="id2" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a>.</p>
+with categorical rating outcomes <a class="footnote-reference brackets" href="#id6" id="id1" role="doc-noteref"><span class="fn-bracket">[</span>1<span class="fn-bracket">]</span></a> <a class="footnote-reference brackets" href="#id7" id="id2" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a>.</p>
 </section>
 <section id="notation">
 <h2>Notation<a class="headerlink" href="#notation" title="Link to this heading"></a></h2>
@@ -200,8 +200,8 @@ <h2>Notation<a class="headerlink" href="#notation" title="Link to this heading">
 </section>
 <section id="example-group-1">
 <h2>Example - Group-1<a class="headerlink" href="#example-group-1" title="Link to this heading"></a></h2>
-<table class="docutils align-default" id="id7">
-<caption><span class="caption-number">Table 12 </span><span class="caption-text">Fleiss’s <span class="math notranslate nohighlight">\(\kappa = 1.0\)</span></span><a class="headerlink" href="#id7" title="Link to this table"></a></caption>
+<table class="docutils align-default" id="id8">
+<caption><span class="caption-number">Table 12 </span><span class="caption-text">Fleiss’s <span class="math notranslate nohighlight">\(\kappa = 1.0\)</span></span><a class="headerlink" href="#id8" title="Link to this table"></a></caption>
 <colgroup>
 <col style="width: 20.0%" />
 <col style="width: 20.0%" />
@@ -256,8 +256,8 @@ <h2>Example - Group-1<a class="headerlink" href="#example-group-1" title="Link t
 </tr>
 </tbody>
 </table>
-<table class="docutils align-default" id="id8">
-<caption><span class="caption-number">Table 13 </span><span class="caption-text">Fleiss’s <span class="math notranslate nohighlight">\(\kappa\)</span> = -0.0909090909090909</span><a class="headerlink" href="#id8" title="Link to this table"></a></caption>
+<table class="docutils align-default" id="id9">
+<caption><span class="caption-number">Table 13 </span><span class="caption-text">Fleiss’s <span class="math notranslate nohighlight">\(\kappa\)</span> = -0.0909090909090909</span><a class="headerlink" href="#id9" title="Link to this table"></a></caption>
 <colgroup>
 <col style="width: 20.0%" />
 <col style="width: 20.0%" />
@@ -357,7 +357,7 @@ <h2>More Details<a class="headerlink" href="#more-details" title="Link to this h
 probability of having agreement for a sample from two randomly selected raters under the assumption of no agreement,
 which corresponds to the assumption of <span class="math notranslate nohighlight">\((N_{i1},\ldots, N_{iJ}) \sim multi(n, (p_1,\ldots, p_J))\)</span>.
 Note that the notations in this page did not use conventional ‘hat’ to represent estimated <span class="math notranslate nohighlight">\(p_j\)</span>.</p>
-<p>The equation <a class="reference internal" href="#equation-eq-kappa1">Eq. (3)</a> can be expressed as <a class="footnote-reference brackets" href="#id6" id="id3" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 9)</sup>,</p>
+<p>The equation <a class="reference internal" href="#equation-eq-kappa1">Eq. (3)</a> can be expressed as <a class="footnote-reference brackets" href="#id7" id="id3" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 9)</sup>,</p>
 <div class="math notranslate nohighlight">
 \[\kappa = \frac{\sum_{i=1}^{n}\sum_{j=1}^J N_{ij}^2 - nR\left(1+(R-1)\sum_{j=1}^J p_j^2\right)}{nR(R-1)(1-\sum_{j=1}^J p_j^2)}\]</div>
 <p>Note that Fleiss (1971) assumed large <span class="math notranslate nohighlight">\(n\)</span> and fixed <span class="math notranslate nohighlight">\(p_j\)</span> while deriving variance of kappa.
@@ -369,13 +369,17 @@ <h2>More Details<a class="headerlink" href="#more-details" title="Link to this h
 <div class="math notranslate nohighlight">
 \[c(n,R,\{p_j\}) = n^{-1}\left(R(R-1)\left(1-\sum_{j=1}^J p_j^2\right)\right)^{-2},\]</div>
 <p>and</p>
-<div class="math notranslate nohighlight" id="equation-eq-kappa2">
-<span class="eqno">(4)<a class="headerlink" href="#equation-eq-kappa2" title="Link to this equation"></a></span>\[\begin{split}var\left(\sum_{j} N_{ij}^2 \right)
-=&amp; E\left(\sum_{j} N_{ij}^4\right) + E\left(\sum_j\sum_k N_{ij}^2 N_{ik}^2 \right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2 \\
-=&amp; 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right).\end{split}\]</div>
+<div class="math notranslate nohighlight" id="equation-eq-kappa2-vn2">
+<span class="eqno">(4)<a class="headerlink" href="#equation-eq-kappa2-vn2" title="Link to this equation"></a></span>\[\begin{split}var\left(\sum_{j} N_{ij}^2 \right)
+=&amp; E\left( \left(\sum_{j} N_{ij}^2\right)^2\right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2 \\
+=&amp; E\left(\sum_{j} N_{ij}^4\right) + E\left(\sum_j\sum_{k \neq j} N_{ij}^2 N_{ik}^2 \right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2.\end{split}\]</div>
+<p><a class="reference internal" href="#equation-eq-kappa2-vn2">Eq. (4)</a> can be calculated as <a class="footnote-reference brackets" href="#id7" id="id4" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 15)</sup></p>
+<div class="math notranslate nohighlight">
+\[var\left(\sum_{j} N_{ij}^2 \right)
+=&amp; 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right),\]</div>
 </section>
-<section id="id4">
-<h2>Lab Exercise<a class="headerlink" href="#id4" title="Link to this heading"></a></h2>
+<section id="id5">
+<h2>Lab Exercise<a class="headerlink" href="#id5" title="Link to this heading"></a></h2>
 <ol class="arabic simple" start="2">
 <li><p>Find <span class="math notranslate nohighlight">\(Cov(N_{i1},N_{i2})\)</span> under no agreement assumption.</p></li>
 </ol>
@@ -383,13 +387,13 @@ <h2>Lab Exercise<a class="headerlink" href="#id4" title="Link to this heading">
 <section id="reference">
 <h2>Reference<a class="headerlink" href="#reference" title="Link to this heading"></a></h2>
 <aside class="footnote-list brackets">
-<aside class="footnote brackets" id="id5" role="doc-footnote">
+<aside class="footnote brackets" id="id6" role="doc-footnote">
 <span class="label"><span class="fn-bracket">[</span><a role="doc-backlink" href="#id1">1</a><span class="fn-bracket">]</span></span>
 <p>Wikipedia. (year). Fleiss’s kappa. <a class="reference external" href="https://en.wikipedia.org/wiki/Fleiss%27_kappa">https://en.wikipedia.org/wiki/Fleiss%27_kappa</a></p>
 </aside>
-<aside class="footnote brackets" id="id6" role="doc-footnote">
+<aside class="footnote brackets" id="id7" role="doc-footnote">
 <span class="label"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></span>
-<span class="backrefs">(<a role="doc-backlink" href="#id2">1</a>,<a role="doc-backlink" href="#id3">2</a>)</span>
+<span class="backrefs">(<a role="doc-backlink" href="#id2">1</a>,<a role="doc-backlink" href="#id3">2</a>,<a role="doc-backlink" href="#id4">3</a>)</span>
 <p>Fleiss, J. L. (1971). Measuring nominal scale agreement among many raters. Psychological Bulletin, 76(5), 378-382. <a class="reference external" href="https://doi.org/10.1037/h0031619">https://doi.org/10.1037/h0031619</a></p>
 </aside>
 </aside>
diff --git a/std_cdisc.html b/std_cdisc.html
index 9e33bef1..cbb27d27 100644
--- a/std_cdisc.html
+++ b/std_cdisc.html
@@ -63,7 +63,10 @@
 <li class="toctree-l2"><a class="reference internal" href="#cdisc-foundational-standards">CDISC Foundational Standards</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#select-cdisc-version">Select CDISC Version</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#resources">Resources</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#cdisc-library-resource">CDISC Library Resource</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#cdisc-library-resource">CDISC Library Resource</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#get-ct-packages">Get CT Packages</a></li>
+</ul>
+</li>
 <li class="toctree-l2"><a class="reference internal" href="#reference">Reference</a></li>
 </ul>
 </li>
@@ -180,9 +183,14 @@ <h2>CDISC Library Resource<a class="headerlink" href="#cdisc-library-resource" t
 <span class="n">cl</span> <span class="o">=</span> <span class="n">accessLib</span><span class="p">(</span><span class="s2">&quot;/user/home/name/cdisc.txt&quot;</span><span class="p">)</span>
 </pre></div>
 </div>
-<p>The connection requires personal key.
-Therefore, this pages does not include test code demonstrations.
-Please see API Reference for functions included in <code class="docutils literal notranslate"><span class="pre">stdcdisc.lib</span></code>.</p>
+<section id="get-ct-packages">
+<h3>Get CT Packages<a class="headerlink" href="#get-ct-packages" title="Link to this heading"></a></h3>
+<p>To get a list of newest CT packages available:</p>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">cl</span><span class="o">.</span><span class="n">get_ct_list</span><span class="p">()</span>
+<span class="nb">print</span><span class="p">(</span><span class="n">cl</span><span class="o">.</span><span class="n">ct_list_titles</span><span class="p">)</span>
+</pre></div>
+</div>
+</section>
 </section>
 <section id="reference">
 <h2>Reference<a class="headerlink" href="#reference" title="Link to this heading"></a></h2>
