diff --git a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
index 2b444c58..9c3b4727 100644
--- a/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
+++ b/_downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
@@ -328,7 +328,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 22-Jul-2024 at 00:01:13 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 22-Jul-2024 at 02:39:11 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -429,7 +429,7 @@ <h2>Summary</h2>
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   </body>
   <footer>
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&#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&#34;, &#34;duration&#34;: &#34;1 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_column&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;1 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_cdt.py::TestCdt::test_diff_2cols_in_2df_with_non_existing_group&#34;, &#34;duration&#34;: &#34;1 ms&#34;, 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&#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlgt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_hlgt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_hlt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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&#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_pt&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_pt_given_soc&#34;, &#34;duration&#34;: &#34;6 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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&#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_find_soc&#34;, &#34;duration&#34;: &#34;4 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_health_emt.py::TestEmt::test_find_soc&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;4 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_health_emt.py::TestEmt::test_list_files&#34;, &#34;duration&#34;: &#34;26 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td 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diff --git a/_sources/statlab_kappa2.rst.txt b/_sources/statlab_kappa2.rst.txt
index 2edeae40..602273c4 100644
--- a/_sources/statlab_kappa2.rst.txt
+++ b/_sources/statlab_kappa2.rst.txt
@@ -251,13 +251,14 @@ probability of having agreement for a sample from two randomly selected raters e
 :eq:`eq_exp1` corresponds to the expected 
 probability of having agreement for a sample from two randomly selected raters under the assumption of no agreement, 
 which corresponds to the assumption of :math:`(N_{i1},\ldots, N_{iJ}) \sim multi(R, (p_1,\ldots, p_J))` where :math:`R>4`.
-Note that the notations in this page did not use conventional 'hat' to represent estimated :math:`p_j`.
 
+
+Let :math:`S_{p2} = \sum_j p_j^2`, :math:`S_{p3} = \sum_j p_j^3`, and :math:`S_{p4} = \sum_j p_j^4`. 
 The equation :eq:`eq_kappa1` can be expressed as [2]_ :sup:`(Eq. 9)`,
 
 .. math::
 
-  \kappa = \frac{\sum_{i=1}^{n}\sum_{j=1}^J N_{ij}^2 - nR\left(1+(R-1)\sum_{j=1}^J p_j^2\right)}{nR(R-1)(1-\sum_{j=1}^J p_j^2)}
+  \kappa = \frac{\sum_{i=1}^{n}\sum_{j=1}^J N_{ij}^2 - nR\left(1+(R-1) S_{p2} \right)}{nR(R-1)(1- S_{p2} )}
 
 
 Note that Fleiss (1971) assumed large :math:`n` and fixed :math:`p_j` while deriving variance of kappa.
@@ -272,7 +273,7 @@ where
 
 .. math::
 
-  c(n,R,\{p_j\}) = n^{-1}\left(R(R-1)\left(1-\sum_{j=1}^J p_j^2\right)\right)^{-2},
+  c(n,R,\{p_j\}) = n^{-1}\left(R(R-1)\left(1-S_{p2}\right)\right)^{-2},
 
 and 
 
@@ -294,7 +295,7 @@ The first element of :eq:`eq_kappa2_vn2` can be calculated as [2]_ :sup:`(Eq. 12
   :label: eq_kappa2_vn3
 
   E\left(\sum_{j} N_{ij}^4\right)
-  = R + 7R(R-1)\sum_j p_j^2 + 6R(R-1)(R-2)\sum_j p_j^3 + R(R-1)(R-2)(R-3)\sum_j p_j^4
+  = R + 7R(R-1)S_{p2} + 6R(R-1)(R-2)S_{p3} + R(R-1)(R-2)(R-3)S_{p4}
 
 The third element of :eq:`eq_kappa2_vn2` can be calculated as [2]_ :sup:`(Eq. 14)`
 
@@ -302,8 +303,8 @@ The third element of :eq:`eq_kappa2_vn2` can be calculated as [2]_ :sup:`(Eq. 14
   :label: eq_kappa2_vn4
 
   \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2 
-  =& R^2\left(1 + (R-1)\sum_{j} p_j^2 \right)^2  \\
-  =& R^2 + R^2(R-1)\left(2\sum_{j} p_j^2 + (R-1)(\sum_j p_j^2)^2\right) 
+  =& R^2\left(1 + (R-1)S_{p2} \right)^2  \\
+  =& R^2 + R^2(R-1)\left(2 S_{p2} + (R-1)S_{p2}^2\right) 
 
 The second element of :eq:`eq_kappa2_vn2` can be calculated, using 
 :math:`E\left( N_{ij}^2 N_{ik}^2 \right) = R(R-1)p_j(p_k+(R-2)p_k^2) + R(R-1)(R-2)p_j^2(p_k+(R-3)p_k^2)`, as
@@ -312,9 +313,9 @@ The second element of :eq:`eq_kappa2_vn2` can be calculated, using
   :label: eq_kappa2_vn5
 
   E\left( \sum_j\sum_{k \neq j} N_{ij}^2 N_{ik}^2 \right) 
-  =& R(R-1) + R(R-1)(2R-5)\left(\sum_j p_j^2\right) 
-  - 2R(R-1)(R-2)\left(\sum_j p_j^3\right) \\
-  &- R(R-1)(R-2)(R-3)\left(\sum_j p_j^4 \right) + R(R-1)(R-2)(R-3) \left(\sum_{j} p_j^2\right)^2
+  =& R(R-1) + R(R-1)(2R-5)S_{p2} 
+  - 2R(R-1)(R-2)S_{p3} \\
+  &- R(R-1)(R-2)(R-3)S_{p4} + R(R-1)(R-2)(R-3) S_{p2}^2
 
 Combining :eq:`eq_kappa2_vn3`, :eq:`eq_kappa2_vn4`, and :eq:`eq_kappa2_vn5`, 
 :eq:`eq_kappa2_vn2` can be calculated as [2]_ :sup:`(Eq. 15)`
@@ -322,7 +323,7 @@ Combining :eq:`eq_kappa2_vn3`, :eq:`eq_kappa2_vn4`, and :eq:`eq_kappa2_vn5`,
 .. math::
 
   var\left(\sum_{j} N_{ij}^2 \right) 
-  = 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right).
+  = 2R(R-1)\left(S_{p2} - (2R-3)S_{p2}^2 + 2(R-2)S_{p3}\right).
 
 *************
 Lab Exercise
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index 2b444c58..9c3b4727 100644
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   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 22-Jul-2024 at 00:01:13 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 22-Jul-2024 at 02:39:11 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -429,7 +429,7 @@ <h2>Summary</h2>
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class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_compare_file_size&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;754 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&#34;, &#34;duration&#34;: &#34;845 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_get_outline_list&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;845 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}], &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&#34;, &#34;duration&#34;: &#34;828 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;tests/test_stdiso_pdfsummary.py::TestPdfSummary::test_show_outline_tree&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;828 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;No log output captured.&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
     <script>
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 const { getCollapsedCategory, setCollapsedIds } = require('./storage.js')
diff --git a/example_cdtg.html b/example_cdtg.html
index 99bad217..a574aea5 100644
--- a/example_cdtg.html
+++ b/example_cdtg.html
@@ -133,15 +133,11 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 11.1% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
-  warnings.warn(msg, UserWarning)
-/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 25.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
-  warnings.warn(msg, UserWarning)
-/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 30.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 35.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
   warnings.warn(msg, UserWarning)
 </pre></div>
 </div>
-<img alt="_images/b48368b32682c4cc9ab6249c62eef7d29bd38d3e5a903ca07b6c911f1f2a03f5.png" src="_images/b48368b32682c4cc9ab6249c62eef7d29bd38d3e5a903ca07b6c911f1f2a03f5.png" />
+<img alt="_images/82f878b8d8450009ea9f3b8434afd4a147fa4501db9f66766beaffc03493b60c.png" src="_images/82f878b8d8450009ea9f3b8434afd4a147fa4501db9f66766beaffc03493b60c.png" />
 </div>
 </div>
 <p>To create a line plot:</p>
@@ -153,7 +149,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="_images/cfddb32ab3f2294e749768f3ba9bf366367e88e301af8cde289f5acf8720780c.png" src="_images/cfddb32ab3f2294e749768f3ba9bf366367e88e301af8cde289f5acf8720780c.png" />
+<img alt="_images/4cd44a2a004d681aab3cbb72afe7536c2407426ef57d7ab86175e399660b4e56.png" src="_images/4cd44a2a004d681aab3cbb72afe7536c2407426ef57d7ab86175e399660b4e56.png" />
 </div>
 </div>
 </section>
diff --git a/example_clinical.html b/example_clinical.html
index f2344a47..a8b376fc 100644
--- a/example_clinical.html
+++ b/example_clinical.html
@@ -131,8 +131,8 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  meal  calorie
-0  STD1      TRT1  SUBJ01  VISIT1     1     1338
-1  STD1      TRT1  SUBJ01  VISIT1     2     1957
+0  STD1      TRT1  SUBJ01  VISIT1     1      658
+1  STD1      TRT1  SUBJ01  VISIT1     2     1767
 </pre></div>
 </div>
 </div>
@@ -149,12 +149,12 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>  study treatment subject   visit  N(0&lt;=X&lt;500)  N(500&lt;=X&lt;1000)  \
-0  STD1      TRT1  SUBJ01  VISIT1            1               0   
-1  STD1      TRT1  SUBJ01  VISIT2            0               0   
+0  STD1      TRT1  SUBJ01  VISIT1            1               1   
+1  STD1      TRT1  SUBJ01  VISIT2            0               1   
 
    N(1000&lt;=V&lt;=2000)  N(all)  
-0                 4       5  
-1                 3       3  
+0                 2       4  
+1                 4       5  
 </pre></div>
 </div>
 </div>
@@ -169,22 +169,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  N(0&lt;=X&lt;3)  N(3&lt;=X&lt;5)  N(5&lt;=V&lt;=7)  N(all)
-0   STD1      TRT1  VISIT1          3         10           7      20
-1   STD1      TRT1  VISIT2          5          6           5      16
-2   STD1      TRT1  VISIT3          3          4           3      10
-3   STD1      TRT1  VISIT4          3          3           1       7
-4   STD1      TRT2  VISIT1          7          8           5      20
-5   STD1      TRT2  VISIT2          4          6           3      13
-6   STD1      TRT2  VISIT3          5          3           2      10
-7   STD1      TRT2  VISIT4          0          2           1       3
-8   STD2      TRT1  VISIT1          6          9           5      20
-9   STD2      TRT1  VISIT2          4          6           1      11
-10  STD2      TRT1  VISIT3          1          4           1       6
-11  STD2      TRT1  VISIT4          1          3           1       5
-12  STD2      TRT2  VISIT1          6          8           6      20
-13  STD2      TRT2  VISIT2          3          9           4      16
-14  STD2      TRT2  VISIT3          4          4           3      11
-15  STD2      TRT2  VISIT4          2          4           1       7
+0   STD1      TRT1  VISIT1          4         10           6      20
+1   STD1      TRT1  VISIT2          4          5           4      13
+2   STD1      TRT1  VISIT3          2          6           1       9
+3   STD1      TRT1  VISIT4          0          6           0       6
+4   STD1      TRT2  VISIT1          5         13           2      20
+5   STD1      TRT2  VISIT2          3          8           3      14
+6   STD1      TRT2  VISIT3          3          5           2      10
+7   STD1      TRT2  VISIT4          0          3           1       4
+8   STD2      TRT1  VISIT1          3          8           9      20
+9   STD2      TRT1  VISIT2          4         10           1      15
+10  STD2      TRT1  VISIT3          4          5           2      11
+11  STD2      TRT1  VISIT4          2          1           2       5
+12  STD2      TRT2  VISIT1          7         11           2      20
+13  STD2      TRT2  VISIT2          0         11           1      12
+14  STD2      TRT2  VISIT3          2          3           1       6
+15  STD2      TRT2  VISIT4          0          1           1       2
 </pre></div>
 </div>
 </div>
@@ -198,22 +198,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>   study treatment   visit  Sum(0&lt;=X&lt;3)  Sum(3&lt;=X&lt;5)  Sum(5&lt;=V&lt;=7)  Sum(all)
-0   STD1      TRT1  VISIT1            6           36            35        77
-1   STD1      TRT1  VISIT2           10           21            25        56
-2   STD1      TRT1  VISIT3            6           16            15        37
-3   STD1      TRT1  VISIT4            6           11             5        22
-4   STD1      TRT2  VISIT1           14           28            25        67
-5   STD1      TRT2  VISIT2            8           20            15        43
-6   STD1      TRT2  VISIT3           10           10            10        30
-7   STD1      TRT2  VISIT4            0            8             5        13
-8   STD2      TRT1  VISIT1           12           30            25        67
-9   STD2      TRT1  VISIT2            8           21             5        34
-10  STD2      TRT1  VISIT3            2           16             5        23
-11  STD2      TRT1  VISIT4            2           10             5        17
-12  STD2      TRT2  VISIT1           12           28            30        70
-13  STD2      TRT2  VISIT2            6           30            20        56
-14  STD2      TRT2  VISIT3            8           16            15        39
-15  STD2      TRT2  VISIT4            4           13             5        22
+0   STD1      TRT1  VISIT1            8           35            30        73
+1   STD1      TRT1  VISIT2            8           17            20        45
+2   STD1      TRT1  VISIT3            4           20             5        29
+3   STD1      TRT1  VISIT4            0           21             0        21
+4   STD1      TRT2  VISIT1           10           44            10        64
+5   STD1      TRT2  VISIT2            6           29            15        50
+6   STD1      TRT2  VISIT3            6           18            10        34
+7   STD1      TRT2  VISIT4            0           10             5        15
+8   STD2      TRT1  VISIT1            6           27            45        78
+9   STD2      TRT1  VISIT2            8           37             5        50
+10  STD2      TRT1  VISIT3            8           17            10        35
+11  STD2      TRT1  VISIT4            4            4            10        18
+12  STD2      TRT2  VISIT1           14           42            10        66
+13  STD2      TRT2  VISIT2            0           38             5        43
+14  STD2      TRT2  VISIT3            4           12             5        21
+15  STD2      TRT2  VISIT4            0            3             5         8
 </pre></div>
 </div>
 </div>
diff --git a/example_emt3.html b/example_emt3.html
index fc969d25..bcd50428 100644
--- a/example_emt3.html
+++ b/example_emt3.html
@@ -295,95 +295,92 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
     ├── Abdominal Pain:
     │   ├── [Classification] Broad:
     │   │   ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-    │   │   │   ├── [PT01] Haemorrhagic erosive gastritis
-    │   │   │   ├── [PT02] Infantile colic
-    │   │   │   ├── [PT03] Large intestine infection
-    │   │   │   ├── [PT04] Visceral pain
-    │   │   │   └── [PT05] Segmental arterial mediolysis
+    │   │   │   ├── [PT01] Complicated appendicitis
+    │   │   │   ├── [PT02] Gastritis erosive
+    │   │   │   ├── [PT03] Gastroenteritis escherichia coli
+    │   │   │   ├── [PT04] Haemorrhagic erosive gastritis
+    │   │   │   ├── [PT05] Helicobacter duodenal ulcer
+    │   │   │   ├── [PT06] Peptic ulcer
+    │   │   │   ├── [PT07] Yao syndrome
+    │   │   │   └── [PT08] Segmental arterial mediolysis
     │   │   ├── [SOC] soc360phgmkaCxrALPg:
-    │   │   │   ├── [PT06] Gastritis erosive
-    │   │   │   ├── [PT07] Gastroenterostomy
-    │   │   │   ├── [PT08] Helicobacter duodenal ulcer
-    │   │   │   └── [PT09] Peptic ulcer
+    │   │   │   ├── [PT09] Gastroenteritis Escherichia coli
+    │   │   │   ├── [PT10] Gastro-enterostomy
+    │   │   │   ├── [PT11] Infantile colic
+    │   │   │   ├── [PT12] Ulcerative duodenitis
+    │   │   │   ├── [PT13] CRIA syndrome
+    │   │   │   └── [PT14] Peritoneoplasty
     │   │   └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-    │   │       ├── [PT10] Carnett&#39;s sign positive
-    │   │       ├── [PT11] Complicated appendicitis
-    │   │       ├── [PT12] Gastric irritation
-    │   │       ├── [PT13] Gastroenteritis escherichia coli
-    │   │       ├── [PT14] Gastroenteritis Escherichia coli
-    │   │       ├── [PT15] Gastro-enterostomy
-    │   │       ├── [PT16] Ulcerative duodenitis
-    │   │       ├── [PT17] CRIA syndrome
-    │   │       ├── [PT18] Bauhin&#39;s valve syndrome
-    │   │       ├── [PT19] Yao syndrome
-    │   │       └── [PT20] Peritoneoplasty
+    │   │       ├── [PT15] Carnett&#39;s sign positive
+    │   │       ├── [PT16] Gastric irritation
+    │   │       ├── [PT17] Gastroenterostomy
+    │   │       ├── [PT18] Large intestine infection
+    │   │       ├── [PT19] Visceral pain
+    │   │       └── [PT20] Bauhin&#39;s valve syndrome
     │   └── [Classification] Narrow:
     │       ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-    │       │   ├── [PT21] Abdominal pain
-    │       │   ├── [PT22] Abdominal pain NOS
-    │       │   ├── [PT23] Abdominal pain upper
-    │       │   ├── [PT24] Abdominal rigidity
-    │       │   ├── [PT25] Gastrointestinal pain
-    │       │   ├── [PT26] Intestinal spasm
-    │       │   └── [PT27] Ilioinguinal neuralgia
+    │       │   ├── [PT21] Abdominal migraine
+    │       │   ├── [PT22] Abdominal pain upper
+    │       │   ├── [PT23] Acute abdomen
+    │       │   ├── [PT24] Gastrointestinal pain
+    │       │   └── [PT25] Intestinal spasm
     │       ├── [SOC] soc360phgmkaCxrALPg:
-    │       │   ├── [PT28] Abdominal pain aggravated
-    │       │   ├── [PT29] Abdominal rebound tenderness
-    │       │   ├── [PT30] Abdominal tenderness
-    │       │   ├── [PT31] Acute abdomen
-    │       │   ├── [PT32] Gastrointestinal discomfort
-    │       │   ├── [PT33] Gastrointestinal pain NOS
-    │       │   ├── [PT34] Perihepatic discomfort
-    │       │   ├── [PT35] Spleen pain
-    │       │   └── [PT36] Ulcer type pain
+    │       │   ├── [PT26] Abdominal pain
+    │       │   ├── [PT27] Abdominal pain lower
+    │       │   ├── [PT28] Abdominal rebound tenderness
+    │       │   ├── [PT29] Enteric neuropathy
+    │       │   ├── [PT30] Epigastric discomfort
+    │       │   ├── [PT31] Gastrointestinal discomfort
+    │       │   ├── [PT32] Gastrointestinal upset
+    │       │   ├── [PT33] Perihepatic discomfort
+    │       │   ├── [PT34] Spleen pain
+    │       │   └── [PT35] Ulcer type pain
     │       └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-    │           ├── [PT37] Abdominal discomfort
-    │           ├── [PT38] Abdominal migraine
-    │           ├── [PT39] Abdominal pain lower
-    │           ├── [PT40] Enteric neuropathy
-    │           ├── [PT41] Epigastric discomfort
-    │           ├── [PT42] Gastrointestinal upset
-    │           └── [PT43] Stomach discomfort
+    │           ├── [PT36] Abdominal discomfort
+    │           ├── [PT37] Abdominal pain aggravated
+    │           ├── [PT38] Abdominal pain NOS
+    │           ├── [PT39] Abdominal rigidity
+    │           ├── [PT40] Abdominal tenderness
+    │           ├── [PT41] Gastrointestinal pain NOS
+    │           ├── [PT42] Stomach discomfort
+    │           └── [PT43] Ilioinguinal neuralgia
     └── Abnormal Uterine Bleeding:
         ├── [Classification] Broad:
         │   ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
-        │   │   ├── [PT01] Bleeding anovulatory
-        │   │   └── [PT02] Menstrual disorder
+        │   │   ├── [PT01] Anovulatory cycle
+        │   │   └── [PT02] Follicle-stimulating hormone deficiency
         │   ├── [SOC] soc360phgmkaCxrALPg:
         │   │   ├── [PT03] Dysmenorrhoea
-        │   │   └── [PT04] Uterine dehiscence
+        │   │   └── [PT04] Ovarian dysfunction
         │   └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-        │       ├── [PT05] Anovulatory cycle
+        │       ├── [PT05] Bleeding anovulatory
         │       ├── [PT06] Dysmenorrhea
-        │       ├── [PT07] Follicle-stimulating hormone deficiency
-        │       ├── [PT08] Follicle stimulating hormone deficiency
-        │       └── [PT09] Ovarian dysfunction
+        │       ├── [PT07] Follicle stimulating hormone deficiency
+        │       ├── [PT08] Menstrual disorder
+        │       └── [PT09] Uterine dehiscence
         └── [Classification] Narrow:
             ├── [SOC] soc214dfxgAelhGHfEFFkgrAsFYzZBAFs:
             │   ├── [PT10] Abnormal uterine bleeding
-            │   ├── [PT11] Cervix haemorrhage uterine
-            │   ├── [PT12] Dysfunctional uterine bleeding
-            │   ├── [PT13] Intermenstrual bleeding
-            │   ├── [PT14] Menstruation irregular
-            │   ├── [PT15] Oligomenorrhoea
-            │   ├── [PT16] Polymenorrhagia
-            │   ├── [PT17] Polymenorrhoea
-            │   └── [PT18] Uterine rupture
+            │   ├── [PT11] Dysfunctional uterine bleeding
+            │   ├── [PT12] Heavy menstrual bleeding
+            │   ├── [PT13] Menstruation delayed
+            │   ├── [PT14] Oligomenorrhoea
+            │   └── [PT15] Vaginal haemorrhage
             ├── [SOC] soc360phgmkaCxrALPg:
-            │   ├── [PT19] Abnormal withdrawal bleeding
-            │   ├── [PT20] Menorrhagia
-            │   ├── [PT21] Metrorrhagia
-            │   └── [PT22] Vaginal haemorrhage
+            │   ├── [PT16] Cervix haemorrhage uterine
+            │   ├── [PT17] Menstruation irregular
+            │   ├── [PT18] Metrorrhagia
+            │   └── [PT19] Polymenorrhagia
             └── [SOC] soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu:
-                ├── [PT23] Heavy menstrual bleeding
-                ├── [PT24] Hypomenorrhoea
-                ├── [PT25] Menometrorrhagia
-                ├── [PT26] Menstruation delayed
-                ├── [PT27] Postmenopausal haemorrhage
-                └── [PT28] Uterine haemorrhage
-</pre></div>
-</div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
+                ├── [PT20] Abnormal withdrawal bleeding
+                ├── [PT21] Hypomenorrhoea
+                ├── [PT22] Intermenstrual bleeding
+                ├── [PT23] Menometrorrhagia
+                ├── [PT24] Menorrhagia
+                ├── [PT25] Polymenorrhoea
+                ├── [PT26] Postmenopausal haemorrhage
+                ├── [PT27] Uterine haemorrhage
+                └── [PT28] Uterine rupture
 </pre></div>
 </div>
 </div>
@@ -404,92 +401,92 @@ <h2>FMQ Tree<a class="headerlink" href="#fmq-tree" title="Link to this heading">
                                             Abdominal Pain ──┤    
                                 Broad [Classification] ──┤   │    
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤   │   │    
-       Gastroenteritis Escherichia coli [PT01] ──┤   │   │   │    
-                      Gastroenterostomy [PT02] ──┤   │   │   │    
-         Haemorrhagic erosive gastritis [PT03] ──┤   │   │   │    
-            Helicobacter duodenal ulcer [PT04] ──┘   │   │   │    
+               Complicated appendicitis [PT01] ──┤   │   │   │    
+                      Gastritis erosive [PT02] ──┤   │   │   │    
+       Gastroenteritis escherichia coli [PT03] ──┤   │   │   │    
+            Helicobacter duodenal ulcer [PT04] ──┤   │   │   │    
+              Large intestine infection [PT05] ──┤   │   │   │    
+                           Peptic ulcer [PT06] ──┤   │   │   │    
+                  Ulcerative duodenitis [PT07] ──┘   │   │   │    
                          soc360phgmkaCxrALPg [SOC] ──┤   │   │    
-                      Gastritis erosive [PT05] ──┤   │   │   │    
-                        Peritoneoplasty [PT07] ──┤   │   │   │    
-          Segmental arterial mediolysis [PT08] ──┤   │   │   │    
-                           Yao syndrome [PT06] ──┘   │   │   │    
+                Bauhin&#39;s valve syndrome [PT13] ──┤   │   │   │    
+                     Gastric irritation [PT08] ──┤   │   │   │    
+                     Gastro-enterostomy [PT11] ──┤   │   │   │    
+       Gastroenteritis Escherichia coli [PT09] ──┤   │   │   │    
+                      Gastroenterostomy [PT10] ──┤   │   │   │    
+                        Infantile colic [PT12] ──┘   │   │   │    
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘   │   │    
-                Bauhin&#39;s valve syndrome [PT20] ──┤       │   │    
-                          CRIA syndrome [PT19] ──┤       │   │    
-                Carnett&#39;s sign positive [PT09] ──┤       │   │    
-               Complicated appendicitis [PT10] ──┤       │   │    
-                     Gastric irritation [PT11] ──┤       │   │    
-                     Gastro-enterostomy [PT13] ──┤       │   │    
-       Gastroenteritis escherichia coli [PT12] ──┤       │   │    
-                        Infantile colic [PT14] ──┤       │   │    
-              Large intestine infection [PT15] ──┤       │   │    
-                           Peptic ulcer [PT16] ──┤       │   │    
-                  Ulcerative duodenitis [PT17] ──┤       │   │    
-                          Visceral pain [PT18] ──┘       │   │    
+                          CRIA syndrome [PT17] ──┤       │   │    
+                Carnett&#39;s sign positive [PT14] ──┤       │   │    
+         Haemorrhagic erosive gastritis [PT15] ──┤       │   │    
+                        Peritoneoplasty [PT19] ──┤       │   │    
+          Segmental arterial mediolysis [PT20] ──┤       │   │    
+                          Visceral pain [PT16] ──┤       │   │    
+                           Yao syndrome [PT18] ──┘       │   │    
                                Narrow [Classification] ──┘   │    
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤       │    
-           Abdominal rebound tenderness [PT21] ──┤   │       │    
-                   Abdominal tenderness [PT22] ──┤   │       │    
-                     Enteric neuropathy [PT23] ──┤   │       │    
+                     Abdominal migraine [PT21] ──┤   │       │    
+                     Abdominal rigidity [PT22] ──┤   │       │    
+                   Abdominal tenderness [PT23] ──┤   │       │    
+                 Ilioinguinal neuralgia [PT27] ──┤   │       │    
                        Intestinal spasm [PT24] ──┤   │       │    
-                            Spleen pain [PT25] ──┘   │       │    
+                            Spleen pain [PT25] ──┤   │       │    
+                        Ulcer type pain [PT26] ──┘   │       │    
                          soc360phgmkaCxrALPg [SOC] ──┤       │    
-                     Abdominal migraine [PT26] ──┤   │       │    
-                         Abdominal pain [PT27] ──┤   │       │    
-              Abdominal pain aggravated [PT28] ──┤   │       │    
-                   Abdominal pain lower [PT29] ──┤   │       │    
-                   Abdominal pain upper [PT30] ──┤   │       │    
-                          Acute abdomen [PT31] ──┤   │       │    
-                  Epigastric discomfort [PT32] ──┤   │       │    
-                  Gastrointestinal pain [PT33] ──┤   │       │    
-                 Gastrointestinal upset [PT34] ──┤   │       │    
-                 Perihepatic discomfort [PT35] ──┘   │       │    
+           Abdominal rebound tenderness [PT28] ──┤   │       │    
+                          Acute abdomen [PT29] ──┤   │       │    
+                     Enteric neuropathy [PT30] ──┤   │       │    
+                  Epigastric discomfort [PT31] ──┤   │       │    
+              Gastrointestinal pain NOS [PT32] ──┘   │       │    
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘       │    
-                   Abdominal discomfort [PT36] ──┤           │    
+                   Abdominal discomfort [PT33] ──┤           │    
                      Abdominal pain NOS [PT37] ──┤           │    
-                     Abdominal rigidity [PT38] ──┤           │    
+                         Abdominal pain [PT34] ──┤           │    
+              Abdominal pain aggravated [PT35] ──┤           │    
+                   Abdominal pain lower [PT36] ──┤           │    
+                   Abdominal pain upper [PT38] ──┤           │    
             Gastrointestinal discomfort [PT39] ──┤           │    
-              Gastrointestinal pain NOS [PT40] ──┤           │    
-                 Ilioinguinal neuralgia [PT43] ──┤           │    
-                     Stomach discomfort [PT41] ──┤           │    
-                        Ulcer type pain [PT42] ──┘           │    
+                  Gastrointestinal pain [PT40] ──┤           │    
+                 Gastrointestinal upset [PT41] ──┤           │    
+                 Perihepatic discomfort [PT42] ──┤           │    
+                     Stomach discomfort [PT43] ──┘           │    
                                  Abnormal Uterine Bleeding ──┘    
                                 Broad [Classification] ──┤        
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤   │        
-                      Anovulatory cycle [PT01] ──┤   │   │        
-                   Bleeding anovulatory [PT02] ──┤   │   │        
-                           Dysmenorrhea [PT03] ──┤   │   │        
-                     Menstrual disorder [PT04] ──┘   │   │        
+                          Dysmenorrhoea [PT01] ──┤   │   │        
+Follicle stimulating hormone deficiency [PT02] ──┤   │   │        
+                     Uterine dehiscence [PT03] ──┘   │   │        
                          soc360phgmkaCxrALPg [SOC] ──┤   │        
-                          Dysmenorrhoea [PT05] ──┤   │   │        
-Follicle stimulating hormone deficiency [PT07] ──┤   │   │        
-Follicle-stimulating hormone deficiency [PT06] ──┤   │   │        
-                    Ovarian dysfunction [PT08] ──┘   │   │        
+                      Anovulatory cycle [PT04] ──┤   │   │        
+                     Menstrual disorder [PT05] ──┘   │   │        
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘   │        
-                     Uterine dehiscence [PT09] ──┘       │        
+                   Bleeding anovulatory [PT06] ──┤       │        
+                           Dysmenorrhea [PT07] ──┤       │        
+Follicle-stimulating hormone deficiency [PT08] ──┤       │        
+                    Ovarian dysfunction [PT09] ──┘       │        
                                Narrow [Classification] ──┘        
            soc214dfxgAelhGHfEFFkgrAsFYzZBAFs [SOC] ──┤            
          Dysfunctional uterine bleeding [PT10] ──┤   │            
                Heavy menstrual bleeding [PT11] ──┤   │            
-                         Hypomenorrhoea [PT12] ──┤   │            
-                       Menometrorrhagia [PT13] ──┤   │            
-                 Menstruation irregular [PT14] ──┤   │            
-                    Uterine haemorrhage [PT15] ──┘   │            
+                   Menstruation delayed [PT12] ──┤   │            
+                        Polymenorrhagia [PT13] ──┤   │            
+                         Polymenorrhoea [PT14] ──┘   │            
                          soc360phgmkaCxrALPg [SOC] ──┤            
-           Abnormal withdrawal bleeding [PT16] ──┤   │            
-             Cervix haemorrhage uterine [PT17] ──┤   │            
-                   Menstruation delayed [PT18] ──┤   │            
-                           Metrorrhagia [PT19] ──┤   │            
-                        Polymenorrhagia [PT20] ──┤   │            
-                         Polymenorrhoea [PT21] ──┘   │            
+           Abnormal withdrawal bleeding [PT15] ──┤   │            
+             Cervix haemorrhage uterine [PT16] ──┤   │            
+                         Hypomenorrhoea [PT17] ──┤   │            
+                Intermenstrual bleeding [PT18] ──┤   │            
+                       Menometrorrhagia [PT19] ──┤   │            
+                            Menorrhagia [PT20] ──┤   │            
+                 Menstruation irregular [PT21] ──┤   │            
+                        Oligomenorrhoea [PT22] ──┤   │            
+                    Uterine haemorrhage [PT23] ──┤   │            
+                    Vaginal haemorrhage [PT24] ──┘   │            
         soc972ZiuFsAfKKVWFbSZdYcgUoCiSTyEYKu [SOC] ──┘            
-              Abnormal uterine bleeding [PT22] ──┤                
-                Intermenstrual bleeding [PT23] ──┤                
-                            Menorrhagia [PT24] ──┤                
-                        Oligomenorrhoea [PT25] ──┤                
-             Postmenopausal haemorrhage [PT26] ──┤                
-                        Uterine rupture [PT27] ──┤                
-                    Vaginal haemorrhage [PT28] ──┘                
+              Abnormal uterine bleeding [PT25] ──┤                
+                           Metrorrhagia [PT26] ──┤                
+             Postmenopausal haemorrhage [PT27] ──┤                
+                        Uterine rupture [PT28] ──┘                
 </pre></div>
 </div>
 </div>
diff --git a/example_files.html b/example_files.html
index 5b2cc28e..64b765af 100644
--- a/example_files.html
+++ b/example_files.html
@@ -153,7 +153,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_68/
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_19/
 ├── subfolder1/
 └── subfolder2/
     └── testfile3
@@ -170,7 +170,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_68/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>testfolder_19/  &lt;&lt;&lt;((( F=0; D=2 )))&gt;&gt;&gt;
 ├── subfolder1/  &lt;&lt;&lt;((( Empty Folder )))&gt;&gt;&gt;
 └── subfolder2/  &lt;&lt;&lt;((( F=1; D=0 )))&gt;&gt;&gt;
     └── testfile3
@@ -193,7 +193,7 @@ <h1>U/System/List Folder Contents<a class="headerlink" href="#u-system-list-fold
 
                    modified                   created  file_type N_page  \
 0                      None                      None       None   None   
-1  Mon Jul 22 00:01:55 2024  Mon Jul 22 00:01:55 2024  testfile3   None   
+1  Mon Jul 22 02:39:51 2024  Mon Jul 22 02:39:51 2024  testfile3   None   
 
   N_column N_row  
 0     None  None  
diff --git a/searchindex.js b/searchindex.js
index 5dc19b69..e86a293d 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"API Reference": [[0, null]], "Algorithm - 1": [[31, "algorithm-1"]], "Appendix - View PTs Given Any FMQ": [[26, "appendix-view-pts-given-any-fmq"]], "Assign FMQ File Path": [[26, "assign-fmq-file-path"]], "Assign MedDRA Distribution Folder": [[24, "assign-meddra-distribution-folder"], [25, "assign-meddra-distribution-folder"]], "Attributes": [[2, "attributes"], [5, "attributes"], [10, "attributes"], [12, "attributes"]], "Attribution": [[18, "attribution"]], "Background": [[30, "background"], [31, "background"], [32, "background"], [33, "background"]], "Bootstrap CI": [[32, "bootstrap-ci"]], "Bubble Plot": [[32, "bubble-plot"]], "CDISC Foundational Standards": [[34, "cdisc-foundational-standards"]], "CDISC Library Resource": [[34, "cdisc-library-resource"]], "Changelog": [[17, null]], "Classes": [[1, "classes"], [2, "classes"], [3, "classes"], [4, "classes"], [5, "classes"], [6, "classes"], [7, "classes"], [8, "classes"], [10, "classes"], [12, "classes"], [13, "classes"], [14, "classes"], [15, "classes"], [16, "classes"]], "Code of Conduct": [[18, null], [19, "code-of-conduct"]], "Cohen\u2019s Kappa Interpretation (Cohen, 1960)": [[32, "id21"]], "Cohen\u2019s Kappa Interpretation (McHugh, 2012)": [[32, "id22"]], "Cohen\u2019s \\kappa = -0.7241379310344827": [[32, "id28"]], "Cohen\u2019s \\kappa = -1": [[32, "id27"]], "Cohen\u2019s \\kappa = 0": [[32, "id23"], [32, "id24"]], "Cohen\u2019s \\kappa = 1": [[32, "id25"], [32, "id26"]], "Contributing": [[19, null], [29, "contributing"]], "Count of Ratings": [[33, "tbl-count1"]], "Counts for 2 categories": [[32, "id19"]], "Counts for 3 or more categories": [[32, "id20"]], "Credits": [[29, "credits"]], "EMA Implementation of IDMP": [[35, "ema-implementation-of-idmp"]], "EU Database - xEVMPD": [[35, "eu-database-xevmpd"]], "Enforcement": [[18, "enforcement"]], "Example - Group-1": [[30, "example-group-1"], [31, "example-group-1"], [32, "example-group-1"], [33, "example-group-1"]], "Example 1": [[21, "example-1"]], "Extensions": [[32, "extensions"]], "FMQ Tree": [[26, "fmq-tree"]], "Find MedDRA Terms Across Different Hierarchical Levels": [[24, "find-meddra-terms-across-different-hierarchical-levels"]], "Find MedDRA Terms Given a SMQ": [[25, "find-meddra-terms-given-a-smq"]], "Find MedDRA Terms Within a Given Hierarchical Level": [[24, "find-meddra-terms-within-a-given-hierarchical-level"]], "Find SMQ Terms": [[25, "find-smq-terms"]], "Find Sections Using Keywords": [[22, "find-sections-using-keywords"], [23, "find-sections-using-keywords"]], "Find Terms Given a FMQ": [[26, "find-terms-given-a-fmq"]], "Fix Bugs": [[19, "fix-bugs"]], "Fleiss\u2019s \\kappa = -0.0909090909090909": [[33, "id11"]], "Fleiss\u2019s \\kappa = 1.0": [[33, "id10"]], "Functions": [[5, "functions"], [13, "functions"], [15, "functions"]], "Get CT Packages": [[34, "get-ct-packages"]], "Get Started!": [[19, "get-started"]], "H/Clinical/Grouped Summary": [[21, null]], "H/ICH/MedDRA/(MLGs by CIOMS)": [[27, null]], "H/ICH/MedDRA/Basics": [[24, null]], "H/ICH/MedDRA/FMQs by FDA": [[26, null]], "H/ICH/MedDRA/SMQs by ICH": [[25, null]], "H/ICH/eCTD/US/3.2/Heading": [[22, null]], "H/ICH/eCTD/US/4.0/Heading": [[23, null]], "How to Cite": [[29, "how-to-cite"]], "How-to": [[30, "how-to"], [31, "how-to"], [31, "id5"], [32, "how-to"], [33, "how-to"]], "Implement Features": [[19, "implement-features"]], "Installation": [[29, "installation"]], "Interpretation of Cohen\u2019s Kappa Suggested in Literature": [[32, "interpretation-of-cohen-s-kappa-suggested-in-literature"]], "Kendall\u2019s \\tau = -1.0": [[31, "id3"]], "Kendall\u2019s \\tau = 1.0": [[31, "tbl-ex1"]], "Lab Exercise": [[31, "lab-exercise"], [32, "lab-exercise"], [33, "lab-exercise"], [33, "id7"]], "License": [[29, "license"]], "Module 1": [[22, "module-1"], [23, "module-1"]], "Module 2": [[22, "module-2"], [23, "module-2"]], "Module 3": [[22, "module-3"], [23, "module-3"]], "Module 4": [[22, "module-4"], [23, "module-4"]], "Module 5": [[22, "module-5"], [23, "module-5"]], "Module Contents": [[1, "module-contents"], [2, "module-contents"], [3, "module-contents"], [6, "module-contents"], [8, "module-contents"], [10, "module-contents"], [12, "module-contents"], [13, "module-contents"], [14, "module-contents"], [16, "module-contents"]], "More Details": [[30, "more-details"], [33, "more-details"]], "Notation": [[30, "notation"], [31, "notation"], [32, "notation"], [33, "notation"]], "Observed Value": [[30, "tbl-count1"], [31, "tbl-count1"]], "Other Options": [[24, "other-options"], [28, "other-options"]], "Our Pledge": [[18, "our-pledge"]], "Our Responsibilities": [[18, "our-responsibilities"]], "Our Standards": [[18, "our-standards"]], "Package Contents": [[4, "package-contents"], [5, "package-contents"], [7, "package-contents"], [15, "package-contents"]], "Pull Request Guidelines": [[19, "pull-request-guidelines"]], "Reference": [[22, "reference"], [23, "reference"], [24, "reference"], [25, 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diff --git a/statlab_kappa2.html b/statlab_kappa2.html
index 6901ea0b..f0b87f4c 100644
--- a/statlab_kappa2.html
+++ b/statlab_kappa2.html
@@ -355,11 +355,11 @@ <h2>More Details<a class="headerlink" href="#more-details" title="Link to this h
 probability of having agreement for a sample from two randomly selected raters estimated from <a class="reference internal" href="#tbl-count1"><span class="std std-numref">Tabel 11</span></a>.
 <a class="reference internal" href="#equation-eq-exp1">Eq. (2)</a> corresponds to the expected
 probability of having agreement for a sample from two randomly selected raters under the assumption of no agreement,
-which corresponds to the assumption of <span class="math notranslate nohighlight">\((N_{i1},\ldots, N_{iJ}) \sim multi(R, (p_1,\ldots, p_J))\)</span> where <span class="math notranslate nohighlight">\(R&gt;4\)</span>.
-Note that the notations in this page did not use conventional ‘hat’ to represent estimated <span class="math notranslate nohighlight">\(p_j\)</span>.</p>
-<p>The equation <a class="reference internal" href="#equation-eq-kappa1">Eq. (3)</a> can be expressed as <a class="footnote-reference brackets" href="#id9" id="id3" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 9)</sup>,</p>
+which corresponds to the assumption of <span class="math notranslate nohighlight">\((N_{i1},\ldots, N_{iJ}) \sim multi(R, (p_1,\ldots, p_J))\)</span> where <span class="math notranslate nohighlight">\(R&gt;4\)</span>.</p>
+<p>Let <span class="math notranslate nohighlight">\(S_{p2} = \sum_j p_j^2\)</span>, <span class="math notranslate nohighlight">\(S_{p3} = \sum_j p_j^3\)</span>, and <span class="math notranslate nohighlight">\(S_{p4} = \sum_j p_j^4\)</span>.
+The equation <a class="reference internal" href="#equation-eq-kappa1">Eq. (3)</a> can be expressed as <a class="footnote-reference brackets" href="#id9" id="id3" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 9)</sup>,</p>
 <div class="math notranslate nohighlight">
-\[\kappa = \frac{\sum_{i=1}^{n}\sum_{j=1}^J N_{ij}^2 - nR\left(1+(R-1)\sum_{j=1}^J p_j^2\right)}{nR(R-1)(1-\sum_{j=1}^J p_j^2)}\]</div>
+\[\kappa = \frac{\sum_{i=1}^{n}\sum_{j=1}^J N_{ij}^2 - nR\left(1+(R-1) S_{p2} \right)}{nR(R-1)(1- S_{p2} )}\]</div>
 <p>Note that Fleiss (1971) assumed large <span class="math notranslate nohighlight">\(n\)</span> and fixed <span class="math notranslate nohighlight">\(p_j\)</span> while deriving variance of kappa.
 Please see the Fleiss (1971) for more discussions.
 The variance of <span class="math notranslate nohighlight">\(\kappa\)</span> under the assumption of no agreement beyond chance can be approximated as:</p>
@@ -367,7 +367,7 @@ <h2>More Details<a class="headerlink" href="#more-details" title="Link to this h
 \[var(\kappa) = c(n,R,\{p_j\}) var\left(\sum_{j=1}^J N_{1j}^2 \right),\]</div>
 <p>where</p>
 <div class="math notranslate nohighlight">
-\[c(n,R,\{p_j\}) = n^{-1}\left(R(R-1)\left(1-\sum_{j=1}^J p_j^2\right)\right)^{-2},\]</div>
+\[c(n,R,\{p_j\}) = n^{-1}\left(R(R-1)\left(1-S_{p2}\right)\right)^{-2},\]</div>
 <p>and</p>
 <div class="math notranslate nohighlight" id="equation-eq-kappa2-vn2">
 <span class="eqno">(4)<a class="headerlink" href="#equation-eq-kappa2-vn2" title="Link to this equation"></a></span>\[\begin{split}var\left(\sum_{j} N_{ij}^2 \right)
@@ -380,24 +380,24 @@ <h2>More Details<a class="headerlink" href="#more-details" title="Link to this h
 <p>The first element of <a class="reference internal" href="#equation-eq-kappa2-vn2">Eq. (4)</a> can be calculated as <a class="footnote-reference brackets" href="#id9" id="id4" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 12)</sup></p>
 <div class="math notranslate nohighlight" id="equation-eq-kappa2-vn3">
 <span class="eqno">(5)<a class="headerlink" href="#equation-eq-kappa2-vn3" title="Link to this equation"></a></span>\[E\left(\sum_{j} N_{ij}^4\right)
-= R + 7R(R-1)\sum_j p_j^2 + 6R(R-1)(R-2)\sum_j p_j^3 + R(R-1)(R-2)(R-3)\sum_j p_j^4\]</div>
+= R + 7R(R-1)S_{p2} + 6R(R-1)(R-2)S_{p3} + R(R-1)(R-2)(R-3)S_{p4}\]</div>
 <p>The third element of <a class="reference internal" href="#equation-eq-kappa2-vn2">Eq. (4)</a> can be calculated as <a class="footnote-reference brackets" href="#id9" id="id5" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 14)</sup></p>
 <div class="math notranslate nohighlight" id="equation-eq-kappa2-vn4">
 <span class="eqno">(6)<a class="headerlink" href="#equation-eq-kappa2-vn4" title="Link to this equation"></a></span>\[\begin{split}\left(E\left(\sum_{j} N_{ij}^2\right)\right)^2
-=&amp; R^2\left(1 + (R-1)\sum_{j} p_j^2 \right)^2  \\
-=&amp; R^2 + R^2(R-1)\left(2\sum_{j} p_j^2 + (R-1)(\sum_j p_j^2)^2\right)\end{split}\]</div>
+=&amp; R^2\left(1 + (R-1)S_{p2} \right)^2  \\
+=&amp; R^2 + R^2(R-1)\left(2 S_{p2} + (R-1)S_{p2}^2\right)\end{split}\]</div>
 <p>The second element of <a class="reference internal" href="#equation-eq-kappa2-vn2">Eq. (4)</a> can be calculated, using
 <span class="math notranslate nohighlight">\(E\left( N_{ij}^2 N_{ik}^2 \right) = R(R-1)p_j(p_k+(R-2)p_k^2) + R(R-1)(R-2)p_j^2(p_k+(R-3)p_k^2)\)</span>, as</p>
 <div class="math notranslate nohighlight" id="equation-eq-kappa2-vn5">
 <span class="eqno">(7)<a class="headerlink" href="#equation-eq-kappa2-vn5" title="Link to this equation"></a></span>\[\begin{split}E\left( \sum_j\sum_{k \neq j} N_{ij}^2 N_{ik}^2 \right)
-=&amp; R(R-1) + R(R-1)(2R-5)\left(\sum_j p_j^2\right)
-- 2R(R-1)(R-2)\left(\sum_j p_j^3\right) \\
-&amp;- R(R-1)(R-2)(R-3)\left(\sum_j p_j^4 \right) + R(R-1)(R-2)(R-3) \left(\sum_{j} p_j^2\right)^2\end{split}\]</div>
+=&amp; R(R-1) + R(R-1)(2R-5)S_{p2}
+- 2R(R-1)(R-2)S_{p3} \\
+&amp;- R(R-1)(R-2)(R-3)S_{p4} + R(R-1)(R-2)(R-3) S_{p2}^2\end{split}\]</div>
 <p>Combining <a class="reference internal" href="#equation-eq-kappa2-vn3">Eq. (5)</a>, <a class="reference internal" href="#equation-eq-kappa2-vn4">Eq. (6)</a>, and <a class="reference internal" href="#equation-eq-kappa2-vn5">Eq. (7)</a>,
 <a class="reference internal" href="#equation-eq-kappa2-vn2">Eq. (4)</a> can be calculated as <a class="footnote-reference brackets" href="#id9" id="id6" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a> <sup>(Eq. 15)</sup></p>
 <div class="math notranslate nohighlight">
 \[var\left(\sum_{j} N_{ij}^2 \right)
-= 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right).\]</div>
+= 2R(R-1)\left(S_{p2} - (2R-3)S_{p2}^2 + 2(R-2)S_{p3}\right).\]</div>
 </section>
 <section id="id7">
 <h2>Lab Exercise<a class="headerlink" href="#id7" title="Link to this heading"></a></h2>
