From 2548d88617f3e4bd473fc6c91b3a443a6b82ea75 Mon Sep 17 00:00:00 2001 From: Laxman <48151266+yetulaxman@users.noreply.github.com> Date: Tue, 30 Jan 2024 21:32:10 +0200 Subject: [PATCH] Update snakemake-hello-world.md --- _hands-on/day4/snakemake-hello-world.md | 7 ------- 1 file changed, 7 deletions(-) diff --git a/_hands-on/day4/snakemake-hello-world.md b/_hands-on/day4/snakemake-hello-world.md index 1ebc4a9..175a9ef 100644 --- a/_hands-on/day4/snakemake-hello-world.md +++ b/_hands-on/day4/snakemake-hello-world.md @@ -85,11 +85,4 @@ snakemake --cluster-config cluster.yaml \ snakemake --dag | dot -Tpng > dag.png # Generate directed acyclic graph ``` -### Good to know -- {input} and {output} are placeholders - Snakemake will replace them with appropriate values -- One can use {name} as wildcards (just as * pattern) - -### Fix/caveates (WIP) -1. Deprecated option --cluster-config to customize job resources -2. Scale up with caution. Check slurm options [here](https://github.com/Snakemake-Profiles/slurm)