From 40142156dd0b29252332fb367cbab3ecb93262ae Mon Sep 17 00:00:00 2001 From: 36000 Date: Tue, 3 Sep 2024 13:52:40 -0700 Subject: [PATCH] [FIX] bug in finding ROI from freesurfer using pybids --- AFQ/api/group.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/AFQ/api/group.py b/AFQ/api/group.py index 6fc64149d..bfff84b22 100644 --- a/AFQ/api/group.py +++ b/AFQ/api/group.py @@ -161,7 +161,6 @@ def __init__(self, if not isinstance(bids_layout_kwargs, dict): raise TypeError("bids_layout_kwargs must be a dict") - parallel_params["engine"] = parallel_params.get("engine", "serial") self.logger = logger @@ -378,7 +377,7 @@ def __init__(self, this_kwargs["bundle_info"].apply_to_rois( b_name, this_kwargs["bundle_info"]._use_bids_info, - bids_layout, bids_path, subject, session, + bids_layout, dwi_data_file, subject, session, dry_run=False) self.valid_sub_list.append(subject) @@ -1006,7 +1005,7 @@ def __init__(self, *args, **kwargs): orig.parallel_params["submitter_params"] = \ orig.parallel_params.get("submitter_params", {"plugin": "cf"}) - + orig.parallel_params["cache_dir"] = \ orig.parallel_params.get("cache_dir", None)