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Need a fast tools to calculate shared reads number between pairwise contigs from bam file #1

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xiekunwhy opened this issue Mar 24, 2023 · 0 comments
Open

Need a fast tools to calculate shared reads number between pairwise contigs from bam file #1

xiekunwhy opened this issue Mar 24, 2023 · 0 comments
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help wanted Extra attention is needed

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@xiekunwhy
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Hi all,

One key step of kmerDedup is to calculate shared reads number between pairwise contigs, if you know some tools can do this from a bam file very fast, please tell me, it may speed up kmerDedup.

Best,
Kun
@xiekunwhy xiekunwhy added the help wanted Extra attention is needed label Mar 24, 2023
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