From d87e83d97fc3058b5d2859ea2cf61850b24f3202 Mon Sep 17 00:00:00 2001 From: xfeng Date: Tue, 13 Apr 2021 13:20:26 -0400 Subject: [PATCH] r039: do not pop large complex bubbles --- CommandLines.cpp | 2 +- CommandLines.h | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/CommandLines.cpp b/CommandLines.cpp index 07856b8..f5cb0b3 100644 --- a/CommandLines.cpp +++ b/CommandLines.cpp @@ -171,7 +171,7 @@ void init_opt(hifiasm_opt_t* asm_opt) asm_opt->fp_relevant_reads = NULL; asm_opt->is_mode_low_cov = 0; asm_opt->write_new_graph_bins = 0; - asm_opt->gc_superbubble_tig_max_length = -1;//100000; + asm_opt->gc_superbubble_tig_max_length = 100000; // end of hamt asm_opt->bed_inconsist_rate = 0; // hamt: disable } diff --git a/CommandLines.h b/CommandLines.h index 419e430..ead98ed 100644 --- a/CommandLines.h +++ b/CommandLines.h @@ -4,7 +4,7 @@ #include #define HA_VERSION "0.13-r308" -#define HAMT_VERSION "0.1-r038" +#define HAMT_VERSION "0.1-r039" // #define VERBOSE 1