From 1ae6e50e864530a48fd3674cf1733d6f7574ee38 Mon Sep 17 00:00:00 2001 From: xfeng Date: Sat, 26 Dec 2020 17:56:17 -0500 Subject: [PATCH] update readme. --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 3043160..1634a34 100644 --- a/README.md +++ b/README.md @@ -8,14 +8,14 @@ cd hifiasm-meta && make # Run hifiasm_meta -t32 -oasm reads.fq.gz 2>asm.log -hifiasm_meta -t32 -S -o asm reads.fq.gz 2>asm.log // if the dataset has high redundancy, or overlap & error correction takes way too long +hifiasm_meta -t32 -S -o asm reads.fq.gz 2>asm.log # if the dataset has high redundancy, or overlap & error correction takes way too long ``` ## About this fork -Hifiasm_meta comes with a read selection module, which enables the assembly of dataset of high redundancy without compromising overall assembly quality, and meta-centric graph cleaning modules. It also handles chimeric read detection and contained reads etc more carefully in the metagenome assembly context, which, in some cases, could benefit the less represented species in the sample. We need more test samples to improve the heuristics. +Hifiasm\_meta comes with a read selection module, which enables the assembly of dataset of high redundancy without compromising overall assembly quality, and meta-centric graph cleaning modules. It also handles chimeric read detection and contained reads etc more carefully in the metagenome assembly context, which, in some cases, could benefit the less represented species in the sample. We need more test samples to improve the heuristics. -Currently hifiasm_meta does not take bining info. +Currently hifiasm\_meta does not take bining info. ## Output files @@ -125,4 +125,4 @@ A [Bandage](https://github.com/rrwick/Bandage) plot of primary contig graph: Escherichia coli B3008|8.25%|unseparated\*||Veillonella rogosae|11.02%|pass Escherichia coli B766|7.83%|pass|||| -\*: E.coli strains except B2207 and B766 presented in one subgraph. \ No newline at end of file +\*: E.coli strains except B2207 and B766 presented in one subgraph.