README_conda_install_packages.md

Install AOS-related Python Packages with conda

Download the miniconda bash file

• macOS wget https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh
• Linux wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
• Windows: https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh

Run the miniconda bash file, e.g. macOS

bash Miniconda3-latest-MacOSX-x86_64.sh

Add the conda-forge channel to the .condarc file

conda config --add channels conda-forge

Update conda

conda update conda

Install AOS-related python packages

conda install numpy scipy matplotlib ipython jupyter \
    xarray dask bottleneck netcdf4 cftime nc-time-axis basemap pandas numba \
    scikit-learn  seaborn eofs windspharm cartopy \
    joblib geopandas shapely rasterio hvplot \
    requests beautifulsoup4 wget nco cdo ffmpeg ncview \
    cdsapi salem regionmask jupyterlab jupyter_contrib_nbextensions xesmf

Other interesting packages:

conda install gcc twine sphinx sphinx_rtd_theme spyder

Can also use pip to install packages:

pip install cdsapi # now available from conda; for downloading ERA5 data: https://cds.climate.copernicus.eu/api-how-to#install-the-cds-api-client

pip install salem # now available from conda

pip install regionmask # now available from conda

pip install jupyter_contrib_nbextensions
jupyter contrib nbextension install --user

Clean the installation

conda clean -all