From a8b1dbd0f90d5d48dac8c1c2e40951e592cb8fc1 Mon Sep 17 00:00:00 2001 From: AroneyS Date: Thu, 12 Dec 2024 15:16:08 +1000 Subject: [PATCH] switch appraise to use preload-db --- singlem/appraiser.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/singlem/appraiser.py b/singlem/appraiser.py index 769b085d..0390753b 100644 --- a/singlem/appraiser.py +++ b/singlem/appraiser.py @@ -151,7 +151,7 @@ def _appraise_inexactly(self, metagenome_otu_table_collection, metagenome_collection.sort_otu_tables_by_marker() querier = Querier() - queries = querier.query_with_queries(metagenome_collection, sdb_tmp, max_divergence, SMAFA_NAIVE_INDEX_FORMAT, SequenceDatabase.NUCLEOTIDE_TYPE, 1, None, False, None) + queries = querier.query_with_queries(metagenome_collection, sdb_tmp, max_divergence, SMAFA_NAIVE_INDEX_FORMAT, SequenceDatabase.NUCLEOTIDE_TYPE, 1, None, True, None) sample_to_building_block = {} for hit in queries: