Images missing on Wikisource

[Daniel-Mietchen]

Example in
https://en.wikisource.org/wiki/Wikisource:WikiProject_Open_Access/Programmatic_import_from_PubMed_Central/The_land_crab_Johngarthia_planata_%28Stimpson_1860%29_%28Crustacea_Brachyura_Gecarcinidae%29_colonizes_human-dominated_ecosystems_in_the_continental_main , which is from
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=PMC4092324 :

<fig id="F710883" orientation="portrait" position="float">
    <label>Figure 2.
    </label>
    <caption>
        [..]
    </caption>
    <graphic id="oo_7618.png" xlink:href="biodiversity_data_journal-2-e1161-g002"/>
</fig>

The image files are on Commons:
https://commons.wikimedia.org/wiki/File:The-land-crab-Johngarthiaplanata-%28Stimpson-1860%29-%28Crustacea-Brachyura-Gecarcinidae%29-colonizes-human-biodiversity_data_journal-2-e1161-g001.jpg
and
https://commons.wikimedia.org/wiki/File:The-land-crab-Johngarthiaplanata-%28Stimpson-1860%29-%28Crustacea-Brachyura-Gecarcinidae%29-colonizes-human-biodiversity_data_journal-2-e1161-g002.jpg .

[Klortho]

The XSLT doesn't handle at all right now. This might be a bit of work...

[Klortho]

It might not be so bad. The has a ref-type of fig. So I think the XSLT should do this:

• If it encounters such an , and there is no preceding with the same rid attribute value, then apply-templates on the that is referenced by that rid.

Then it won't matter that the fig actually appears in the float-group at the end.

[Klortho]

I think I might have fixed it, but I can't tell when I upload to my test wiki, because it doesn't have the figures. Daniel, if you could send me a text about how to push XSLT changes to the bot, or if you have some other way of testing, please do.

Here are some notes to myself:

Trouble article:

• PMC4092324
• https://en.wikisource.org/wiki/Wikisource:WikiProject_Open_Access/Programmatic_import_from_PubMed_Central/The_land_crab_Johngarthia_planata_%28Stimpson_1860%29_%28Crustacea_Brachyura_Gecarcinidae%29_colonizes_human-dominated_ecosystems_in_the_continental_main
• nxml in 'Biodivers_Data_J_2014_Jul_8_(2)_e1161/biodiversity_data_journal-2-e1161.nxml
• Figures are in a at the end.
• There are two references to figure 2, that look like this: "Fig. 2".
• In PMC, the figure appears after the paragraph in which the first ref appears.
• Convert with python: python jats-to-mediawiki.py -a PMC4092324
• Or manual:

export XML_CATALOG_FILES=`pwd`/dtd/catalog-test-jats-v1.xml
xsltproc jats-to-mediawiki.xsl \
    'Biodivers_Data_J_2014_Jul_8_(2)_e1161/biodiversity_data_journal-2-e1161.nxml' \
    > PMC4092324.mw.xml

Compare with article that does have good figures:

• PMC1713255,
• https://en.wikisource.org/wiki/Wikisource:WikiProject_Open_Access/Programmatic_import_from_PubMed_Central/Evaluating_Support_for_the_Current_Classification_of_Eukaryotic_Diversity
• nxml in 'PLoS_Genet_2006_Dec_22_2(12)_e220/pgen.0020220.nxml'
• python jats-to-mediawiki.py -a PMC1713255
• The [[File]] tag should come at the end of the paragraph, not where the appears. If the [[File]] comes in the middle of the para, then it induces a paragraph break.
• Manual conversion:

export XML_CATALOG_FILES=~/jats/jatspacks/catalog.xml
xsltproc jats-to-mediawiki.xsl \
    'PLoS_Genet_2006_Dec_22_2(12)_e220/pgen.0020220.nxml' \
    > PMC1713255.mw.xml

[Daniel-Mietchen]

I can't push to the bot (pinging @notconfusing ) but you can have the figures on your test wiki via https://www.mediawiki.org/wiki/InstantCommons .

[wrought]

Issue is resolved for figures but not tables as on 10.3897/BDJ.2.e1161 see #48