From 471b42711dbbb602b2631cf426a6f911a5d6ed8a Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Tue, 1 Oct 2024 05:18:29 +0000 Subject: [PATCH] new figures from pmc; updated config and log --- figure_fetch.log | 22 ++++++++++++++++++++++ query_config.yml | 2 +- 2 files changed, 23 insertions(+), 1 deletion(-) diff --git a/figure_fetch.log b/figure_fetch.log index 82870ec13..a8d2bc8d1 100644 --- a/figure_fetch.log +++ b/figure_fetch.log @@ -500,3 +500,25 @@ 2024-10-01 04:21:50 - ========================================================== +2024-10-01 05:17:50 - Starting NCBI PMC Figure Fetcher + +2024-10-01 05:17:50 - Configuration loaded from query_config.yml + +2024-10-01 05:17:50 - PMC search query: (((((((((((signaling pathway[Figure/Table Caption]) OR signalling pathway[Figure/Table Caption]) OR regulatory pathway[Figure/Table Caption]) OR disease pathway[Figure/Table Caption]) OR drug pathway[Figure/Table Caption]) OR metabolic pathway[Figure/Table Caption]) OR biosynthetic pathway[Figure/Table Caption]) OR synthesis pathway[Figure/Table Caption]) OR cancer pathway[Figure/Table Caption]) OR response pathway[Figure/Table Caption]) OR cycle pathway[Figure/Table Caption])) AND (2023/10/01[PUBDATE] : 2023/11/01[PUBDATE]) + +2024-10-01 05:18:20 - PMC search completed. Fetched 1025 results (max set to 3000). + +2024-10-01 05:18:29 - Extracted 1693 figures from XML content. + +2024-10-01 05:18:29 - Identified 460 pathway figures. + +2024-10-01 05:18:29 - Skipped 460 figures previously processed. + +2024-10-01 05:18:29 - Processed 0 pathway figures for download. + +2024-10-01 05:18:29 - New pathway figures downloaded: 0 + +2024-10-01 05:18:29 - NCBI PMC Figure Fetcher completed + +2024-10-01 05:18:29 - ========================================================== + diff --git a/query_config.yml b/query_config.yml index 660eadc2e..6467f1e81 100644 --- a/query_config.yml +++ b/query_config.yml @@ -4,5 +4,5 @@ terms: (((((((((((signaling pathway[Figure/Table Caption]) OR signalling pathway Caption]) OR biosynthetic pathway[Figure/Table Caption]) OR synthesis pathway[Figure/Table Caption]) OR cancer pathway[Figure/Table Caption]) OR response pathway[Figure/Table Caption]) OR cycle pathway[Figure/Table Caption])) -last_run: 2023/10/01 +last_run: 2023/11/01 exclude_figids: prior_figid_results.tsv