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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(RunALRA,Seurat)
S3method(RunALRA,default)
S3method(as.Seurat,Conos)
S3method(as.Seurat,cell_data_set)
S3method(as.Seurat,list)
S3method(as.cell_data_set,Seurat)
export(ALRAChooseKPlot)
export(ExportToCellbrowser)
export(FastMNNIntegration)
export(PlotMiQC)
export(ReadAlevin)
export(ReadVelocity)
export(RunALRA)
export(RunBanksy)
export(RunCoGAPS)
export(RunFastMNN)
export(RunGLMPCA)
export(RunMiQC)
export(RunOptimizeALS)
export(RunPresto)
export(RunPrestoAll)
export(RunQuantileAlignSNF)
export(RunQuantileNorm)
export(RunSNF)
export(RunVelocity)
export(Runtricycle)
export(StopCellbrowser)
export(as.cell_data_set)
export(scVIIntegration)
importFrom(BiocManager,install)
importFrom(Matrix,Matrix)
importFrom(Matrix,writeMM)
importFrom(R.utils,gzip)
importFrom(Seurat,"DefaultAssay<-")
importFrom(Seurat,"Idents<-")
importFrom(Seurat,"Key<-")
importFrom(Seurat,"Loadings<-")
importFrom(Seurat,"Misc<-")
importFrom(Seurat,"Tool<-")
importFrom(Seurat,"VariableFeatures<-")
importFrom(Seurat,CombinePlots)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,CreateDimReducObject)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,Embeddings)
importFrom(Seurat,FetchData)
importFrom(Seurat,FindAllMarkers)
importFrom(Seurat,FindMarkers)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Idents)
importFrom(Seurat,IsGlobal)
importFrom(Seurat,Loadings)
importFrom(Seurat,LogSeuratCommand)
importFrom(Seurat,Project)
importFrom(Seurat,Reductions)
importFrom(Seurat,SelectIntegrationFeatures)
importFrom(Seurat,SplitObject)
importFrom(Seurat,Stdev)
importFrom(Seurat,Tool)
importFrom(Seurat,VariableFeatures)
importFrom(Seurat,as.Graph)
importFrom(Seurat,as.Seurat)
importFrom(Seurat,as.SingleCellExperiment)
importFrom(cowplot,theme_cowplot)
importFrom(data.table,data.table)
importFrom(data.table,fwrite)
importFrom(data.table,setDTthreads)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_x_continuous)
importFrom(igraph,get.adjacency)
importFrom(methods,"slot<-")
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(remotes,install_github)
importFrom(reticulate,import)
importFrom(reticulate,py_module_available)
importFrom(rlang,"%||%")
importFrom(rlang,check_installed)
importFrom(rlang,duplicate)
importFrom(rsvd,rsvd)
importFrom(stats,as.dist)
importFrom(stats,pnorm)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,wilcox.test)
importFrom(tools,file_ext)
importFrom(utils,assignInNamespace)
importFrom(utils,browseURL)
importFrom(utils,capture.output)
importFrom(utils,install.packages)
importFrom(utils,menu)
importFrom(utils,packageVersion)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)