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How do I run process_data.py on the antigen? #7

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tony-res opened this issue Oct 26, 2023 · 0 comments
Open

How do I run process_data.py on the antigen? #7

tony-res opened this issue Oct 26, 2023 · 0 comments

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@tony-res
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I'd like to run docking on my own PDB files. What I don't understand is how to include the pdb of the antigen.

python process_data.py ${pdb_file} ${heavy_chain_id} ${antigen_chain_id}

Is the ${pdb_file} meant to be for the antibody, the antigen, or both?

How could I do it with one file called antigen.pdb and another called antibody.pdb?
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