Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Enable user to define >1 cohort for subsequent visualization #280

Open
enemeth19 opened this issue Aug 4, 2021 · 5 comments
Open

Enable user to define >1 cohort for subsequent visualization #280

enemeth19 opened this issue Aug 4, 2021 · 5 comments
Assignees
Labels
on hold This issue might be worked on in the future

Comments

@enemeth19
Copy link
Collaborator

No description provided.

@enemeth19 enemeth19 reopened this Aug 4, 2021
@amaraim22
Copy link
Collaborator

"is there a way to look at expression of a specific gene within two cohorts that have different drivers side by side? For example: I am interested in PRKCA expression in EGFR mutant as well as KRAS mutant Lung Adenocarcinoma (LUAD). I would like to look at PRKCA expression in ΔEGFR and PRKCA expression in ΔKRAS patients, both within one heat map or violin plot. When selecting the cohorts of interest, the software appears to only consider patients that have BOTH mutations, ie. EGFR + KRAS (the final heatmap only has data from 1 patient). I know that I can alternatively download csv files and graph the raw data in prism for each condition separately, but I was just curious if I could avoid the step when looking at multiple drivers (10+)."

@enemeth19
Copy link
Collaborator Author

Consider using Materialize Carousel in UI for multiple cohorts (see example)

@enemeth19 enemeth19 self-assigned this Oct 6, 2021
@enemeth19
Copy link
Collaborator Author

enemeth19 commented Oct 9, 2021

Anyone have any thoughts on something like this as just a first step in the UI? The idea is that if the user wanted to define a second cohort, they would scroll only the section of the page that is involved in "Customize your Cohort(s)" horizontally. Nothing else on the page would move/change. The same select boxes would appear on the second page. (This was made using Materialize's Carousel)
Screen Shot 2021-10-09 at 12 53 42 PM
Screen Shot 2021-10-09 at 12 53 49 PM

@ZhenghaoZhu
Copy link
Collaborator

We could try out the tutorial library suggested in #307 to improve the UI of this. @enemeth19 Where is the code for the carousel? I'll try to play around with the library and make a small sample tutorial.

@enemeth19
Copy link
Collaborator Author

That sounds great! The code is in the multipleCohorts branch

@enemeth19 enemeth19 added the on hold This issue might be worked on in the future label Jun 30, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
on hold This issue might be worked on in the future
Projects
None yet
Development

No branches or pull requests

3 participants