From 9ac463754f5234455dbf4d42fd45c18b369aeed0 Mon Sep 17 00:00:00 2001
From: "Erik Garrison (aider)" <erik.garrison@gmail.com>
Date: Sat, 19 Oct 2024 18:55:39 -0500
Subject: [PATCH] fix: Replace deprecated `globalJaccardNumerator` with
 `hgNumerator` in `computeMap.hpp`

---
 src/map/include/computeMap.hpp | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/map/include/computeMap.hpp b/src/map/include/computeMap.hpp
index e676bec5..95b64c8b 100644
--- a/src/map/include/computeMap.hpp
+++ b/src/map/include/computeMap.hpp
@@ -1142,7 +1142,7 @@ namespace skch
           std::unordered_map<hash_t, int> hash_to_freq;
 
           if (param.stage1_topANI_filter) {
-            double maxJaccard = refSketch->globalJaccardNumerator / static_cast<double>(Q.sketchSize);
+            double maxJaccard = refSketch->hgNumerator / static_cast<double>(Q.sketchSize);
             double cutoff_j = Stat::md2j(1 - param.percentageIdentity + param.ANIDiff, param.kmerSize);
             int minIntersectionSize = std::max(
                 static_cast<int>(cutoff_j * Q.sketchSize),
@@ -1443,7 +1443,7 @@ namespace skch
             if (param.stage1_topANI_filter)
             {
               // Use the global Jaccard numerator here
-              double jaccardSimilarity = refSketch->globalJaccardNumerator / Q.sketchSize;
+              double jaccardSimilarity = refSketch->hgNumerator / Q.sketchSize;
               double mash_dist = Stat::j2md(jaccardSimilarity, param.kmerSize);
               double cutoff_ani = std::max(0.0, (1 - mash_dist) - param.ANIDiff);
               double cutoff_j = Stat::md2j(1 - cutoff_ani, param.kmerSize);