From 84773374c110ce2a87ef448911e43cb60a494685 Mon Sep 17 00:00:00 2001
From: Erik Garrison <erik.garrison@gmail.com>
Date: Sat, 1 Jun 2024 11:05:02 -0500
Subject: [PATCH] correct debugging build with png and tsv

---
 .github/workflows/test_on_push.yml | 2 +-
 CMakeLists.txt                     | 4 ++--
 src/common/wflign/CMakeLists.txt   | 2 +-
 src/common/wflign/src/wflign.hpp   | 2 +-
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/test_on_push.yml b/.github/workflows/test_on_push.yml
index e91b640c..72645261 100644
--- a/.github/workflows/test_on_push.yml
+++ b/.github/workflows/test_on_push.yml
@@ -35,7 +35,7 @@ jobs:
       - name: Init and update submodules
         run: git submodule update --init --recursive
       - name: Build wfmash
-        run: cmake -H. -Bbuild -D CMAKE_BUILD_TYPE=Debug -DWFA_PNG_TSV_TIMING=ON && cmake --build build -- -j 2
+        run: cmake -H. -Bbuild -D CMAKE_BUILD_TYPE=Debug -DWFA_PNG_AND_TSV=ON && cmake --build build -- -j 2
       - name: Test mapping coverage with 8 yeast genomes (PAF output)
         run: ASAN_OPTIONS=detect_leaks=1:symbolize=1 LSAN_OPTIONS=verbosity=0:log_threads=1 build/bin/wfmash data/scerevisiae8.fa.gz -p 95 -n 7 -m -L -Y '#' > scerevisiae8.paf; scripts/test.sh data/scerevisiae8.fa.gz.fai scerevisiae8.paf 0.92
       - name: Test mapping+alignment with a subset of the LPA dataset (PAF output)
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 4c579a96..c155913b 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -53,8 +53,8 @@ else()
 endif ()
 
 if(WFA_PNG_AND_TSV)
-    set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -DWFA_PNG_AND_TSV")
-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DWFA_PNG_AND_TSV")
+    set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -DWFA_PNG_TSV_TIMING")
+    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DWFA_PNG_TSV_TIMING")
 endif ()
 
 set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
diff --git a/src/common/wflign/CMakeLists.txt b/src/common/wflign/CMakeLists.txt
index 5341543b..92f62ad1 100644
--- a/src/common/wflign/CMakeLists.txt
+++ b/src/common/wflign/CMakeLists.txt
@@ -35,7 +35,7 @@ else()
     set (CMAKE_CXX_FLAGS "${OpenMP_CXX_FLAGS} ${PIC_FLAG} ${EXTRA_FLAGS}")
 endif ()
 
-if(WFA_PNG_TSV_TIMING)
+if(WFA_PNG_AND_TSV)
     set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -DWFA_PNG_TSV_TIMING")
     set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DWFA_PNG_TSV_TIMING")
 endif ()
diff --git a/src/common/wflign/src/wflign.hpp b/src/common/wflign/src/wflign.hpp
index b0d1a680..5cb4149c 100644
--- a/src/common/wflign/src/wflign.hpp
+++ b/src/common/wflign/src/wflign.hpp
@@ -190,4 +190,4 @@ typedef struct {
 #endif
 } wflign_extend_data_t;
 
-#endif /* WFLIGN_HPP_ */
\ No newline at end of file
+#endif /* WFLIGN_HPP_ */