.vmdrc

mol modstyle 0 0 VDW 1 32
mol rep VDW 1 20
mol default material Diffuse
mol modmaterial 0 0 Diffuse

animate speed 0.8
animate style once
animate goto start
display resetview

animate forward

user add key q exit
user add key f {animate speed [expr .1 + [animate speed]]}
user add key F {animate speed [expr .2 + [animate speed]]}
user add key Alt-f {animate speed 1}
user add key g {animate speed [expr -.1 + [animate speed]]}
user add key G {animate speed [expr -.2 + [animate speed]]}
user add key Alt-g {animate speed 0}
user add key o {mol off 0; mol on 1}
user add key p {mol off 1; mol on 0}
user add key y {rock y by 0.2 200}
user add key Y {rock y by 0}
user add key b {
    #set cell [pbc set {5 5 5} -all];
    #pbc readxst LJatoms.xst;
    #source LJatoms-pbc.tcl;
    pbc box -toggle -center origin -color red;
};

set natoms [atomselect 0 "name C";];
$natoms set radius 0.500000;
set natoms [atomselect 0 "name N";];
$natoms set radius 0.500000;
set natoms [atomselect 0 "name S";];
$natoms set radius 0.500000;