New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

allow option for TU to not be marked as mismatch #1

Open

vtlim opened this issue Feb 19, 2021 · 1 comment

Owner

vtlim commented Feb 19, 2021

highlight these in a different color from blue?

right now T and U is considered a mismatch.
right now a non-standard base letter (like H) is ignored if matching.

Owner Author

vtlim commented May 11, 2021

For edge case 1: allow user to check a box, default unchecked, for "Treat T and U as matching nucleobases?"
Add new function in app.py for def match_TU(text1, text2)
Call that function around lines 60-62, and update the mismatch index list to remove indexes for TU
For edge case 2: allow placeholder non-bases (anything that is not ATGCU), e.g., for known overhanging nucleosides. No change needed.

vtlim changed the title ~~what's considered a mismatch -- edge cases~~ allow option for TU to not be marked as mismatch

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment