Absolute and relative paths in this repo

[dominiquesydow]

Hi @AndreaVolkamer,

I think the paths that you mentioned in your email are only at places where the code is using input or output data paths.
The inputs are not part of this repo but must be on your lab's harddrive. Note:

• Regarding the KLIFS data, I strongly recommend downloading the latest dataset from their website.
• The benchmark data can be used from the harddrive.

Examples that I found:

ratar/scripts/benchmarking.py

Line 43 in 197d3f4

"/home/dominique/Documents/data/benchmarking/fuzcav/sim_dis_pairs/similar_pairs.txt"

ratar/scripts/ratar.sh

Line 7 in 197d3f4

data_dir="/home/dominique/Documents/data"

The folder structures on the harddrive should be untouched, hence updating the path prefix /home/dominique/Documents to wherever you copy the data should be enough. Happy to help here if you send me a directory tree once you found the data on the harddrive.

One big note: We used to work in the lab until 2019 (I think) still with pickle files which is not helpful when you do not have fixed versions of a package. So you likely won't be able to load any of the pickle files anymore. As we stopped development on ratar shortly after, we did not update that output file format.

[dominiquesydow]

You should be able to run the tutorial though, no?
https://github.com/volkamerlab/ratar/blob/197d3f439bb49673e5be2df91be2258ca7215b72/docs/tutorials/ratar_tutorial.ipynb

Can you please tag your student here as well and see if they can give this one a try (note: with Python 3.8 or 3.9)?

[yanz-24]

Hi @dominiquesydow , the tutorial works (I tried with python 3.11.8)

You should be able to run the tutorial though, no? https://github.com/volkamerlab/ratar/blob/197d3f439bb49673e5be2df91be2258ca7215b72/docs/tutorials/ratar_tutorial.ipynb

Can you please tag your student here as well and see if they can give this one a try (note: with Python 3.8 or 3.9)?