diff --git a/Makefile b/Makefile
index 3c9efde0..be43f77f 100644
--- a/Makefile
+++ b/Makefile
@@ -82,7 +82,7 @@ $(DOCDIR):
 	mkdir -p $@
 
 gendoc: $(DOCDIR)
-	cp linkml_model/model/docs/*md $(DOCDIR) ; \
+	cp -pr linkml_model/model/docs/ $(DOCDIR) ; \
 	$(RUN) gen-doc --genmeta --sort-by rank -d $(DOCDIR) $(SOURCE_SCHEMA_PATH)
 
 testdoc: gendoc serve
diff --git a/docs/00preamble/index.html b/docs/00preamble/index.html
index 289ce28f..f24ba41f 100644
--- a/docs/00preamble/index.html
+++ b/docs/00preamble/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -591,10 +595,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="linked-data-modeling-language-specification">Linked Data Modeling Language: Specification</h1>
@@ -615,10 +620,15 @@ <h3 id="status-of-this-specification">Status of this specification</h3>
 <h3 id="license">License</h3>
 <p>This specification, like all parts of LinkML are in the public domain under a Creative Commons Zero license waiver.</p>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -645,11 +655,13 @@ <h3 id="license">License</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/01introduction/index.html b/docs/01introduction/index.html
index 6692e092..61ae268a 100644
--- a/docs/01introduction/index.html
+++ b/docs/01introduction/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -633,10 +637,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="introduction">Introduction</h1>
@@ -714,10 +719,15 @@ <h3 id="part-6-mapping-of-instance-data">Part 6: Mapping of Instance Data</h3>
 <li>RDF and JSON-LD</li>
 </ul>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -744,11 +754,13 @@ <h3 id="part-6-mapping-of-instance-data">Part 6: Mapping of Instance Data</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/02instances/index.html b/docs/02instances/index.html
index 0e0b1bdb..db8717d6 100644
--- a/docs/02instances/index.html
+++ b/docs/02instances/index.html
@@ -6,14 +6,14 @@
 <meta charset="utf-8"/>
 <meta content="width=device-width,initial-scale=1" name="viewport"/>
 <link href="../assets/images/favicon.png" rel="icon"/>
-<meta content="mkdocs-1.3.1, mkdocs-material-8.3.9" name="generator"/>
+<meta content="mkdocs-1.4.2, mkdocs-material-8.5.10" name="generator"/>
 <title>LinkML Instances - LinkML Model</title>
-<link href="../assets/stylesheets/main.1d29e8d0.min.css" rel="stylesheet"/>
-<link href="../assets/stylesheets/palette.cbb835fc.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/main.975780f9.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/palette.2505c338.min.css" rel="stylesheet"/>
 <link crossorigin="" href="https://fonts.gstatic.com" rel="preconnect"/>
 <link href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&amp;display=fallback" rel="stylesheet"/>
 <style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
-<script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+<script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 </head>
 <body data-md-color-accent="amber" data-md-color-primary="teal" data-md-color-scheme="default" dir="ltr">
 <script>var palette=__md_get("__palette");if(palette&&"object"==typeof palette.color)for(var key of Object.keys(palette.color))document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
@@ -74,7 +74,7 @@
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12Z"></path></svg>
 </label>
 <nav aria-label="Search" class="md-search__options">
-<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" type="reset">
+<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" title="Clear" type="reset">
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"></path></svg>
 </button>
 </nav>
@@ -207,8 +207,8 @@
       </a>
 </li>
 <li class="md-nav__item">
-<a class="md-nav__link" href="../SpecificationProfile.md">
-        SpecificationProfile
+<a class="md-nav__link" href="../SpecificationSubset/">
+        SpecificationSubset
       </a>
 </li>
 <li class="md-nav__item">
@@ -588,7 +588,7 @@ <h2 id="instance-accessor-syntax">Instance Accessor Syntax</h2>
 <div class="md-dialog" data-md-component="dialog">
 <div class="md-dialog__inner md-typeset"></div>
 </div>
-<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
-<script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
+<script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
 <script src="https://unpkg.com/mermaid@8.8.0/dist/mermaid.min.js"></script><script>mermaid.initialize({});</script></body>
 </html>
\ No newline at end of file
diff --git a/docs/03schemas/index.html b/docs/03schemas/index.html
index 283014d9..fd7b4ad2 100644
--- a/docs/03schemas/index.html
+++ b/docs/03schemas/index.html
@@ -6,14 +6,14 @@
 <meta charset="utf-8"/>
 <meta content="width=device-width,initial-scale=1" name="viewport"/>
 <link href="../assets/images/favicon.png" rel="icon"/>
-<meta content="mkdocs-1.3.1, mkdocs-material-8.3.9" name="generator"/>
+<meta content="mkdocs-1.4.2, mkdocs-material-8.5.10" name="generator"/>
 <title>Schema Datamodel - LinkML Model</title>
-<link href="../assets/stylesheets/main.1d29e8d0.min.css" rel="stylesheet"/>
-<link href="../assets/stylesheets/palette.cbb835fc.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/main.975780f9.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/palette.2505c338.min.css" rel="stylesheet"/>
 <link crossorigin="" href="https://fonts.gstatic.com" rel="preconnect"/>
 <link href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&amp;display=fallback" rel="stylesheet"/>
 <style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
-<script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+<script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 </head>
 <body data-md-color-accent="amber" data-md-color-primary="teal" data-md-color-scheme="default" dir="ltr">
 <script>var palette=__md_get("__palette");if(palette&&"object"==typeof palette.color)for(var key of Object.keys(palette.color))document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
@@ -74,7 +74,7 @@
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12Z"></path></svg>
 </label>
 <nav aria-label="Search" class="md-search__options">
-<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" type="reset">
+<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" title="Clear" type="reset">
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"></path></svg>
 </button>
 </nav>
@@ -207,8 +207,8 @@
       </a>
 </li>
 <li class="md-nav__item">
-<a class="md-nav__link" href="../SpecificationProfile.md">
-        SpecificationProfile
+<a class="md-nav__link" href="../SpecificationSubset/">
+        SpecificationSubset
       </a>
 </li>
 <li class="md-nav__item">
@@ -1743,7 +1743,7 @@ <h2 id="complete-schema-example-informative">Complete Schema Example (Informativ
 <div class="md-dialog" data-md-component="dialog">
 <div class="md-dialog__inner md-typeset"></div>
 </div>
-<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
-<script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
+<script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
 <script src="https://unpkg.com/mermaid@8.8.0/dist/mermaid.min.js"></script><script>mermaid.initialize({});</script></body>
 </html>
\ No newline at end of file
diff --git a/docs/04derived-schemas/index.html b/docs/04derived-schemas/index.html
index 037ebce7..0fa017c2 100644
--- a/docs/04derived-schemas/index.html
+++ b/docs/04derived-schemas/index.html
@@ -6,14 +6,14 @@
 <meta charset="utf-8"/>
 <meta content="width=device-width,initial-scale=1" name="viewport"/>
 <link href="../assets/images/favicon.png" rel="icon"/>
-<meta content="mkdocs-1.3.1, mkdocs-material-8.3.9" name="generator"/>
+<meta content="mkdocs-1.4.2, mkdocs-material-8.5.10" name="generator"/>
 <title>Derived Schemas - LinkML Model</title>
-<link href="../assets/stylesheets/main.1d29e8d0.min.css" rel="stylesheet"/>
-<link href="../assets/stylesheets/palette.cbb835fc.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/main.975780f9.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/palette.2505c338.min.css" rel="stylesheet"/>
 <link crossorigin="" href="https://fonts.gstatic.com" rel="preconnect"/>
 <link href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&amp;display=fallback" rel="stylesheet"/>
 <style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
-<script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+<script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 </head>
 <body data-md-color-accent="amber" data-md-color-primary="teal" data-md-color-scheme="default" dir="ltr">
 <script>var palette=__md_get("__palette");if(palette&&"object"==typeof palette.color)for(var key of Object.keys(palette.color))document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
@@ -74,7 +74,7 @@
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12Z"></path></svg>
 </label>
 <nav aria-label="Search" class="md-search__options">
-<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" type="reset">
+<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" title="Clear" type="reset">
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"></path></svg>
 </button>
 </nav>
@@ -207,8 +207,8 @@
       </a>
 </li>
 <li class="md-nav__item">
-<a class="md-nav__link" href="../SpecificationProfile.md">
-        SpecificationProfile
+<a class="md-nav__link" href="../SpecificationSubset/">
+        SpecificationSubset
       </a>
 </li>
 <li class="md-nav__item">
@@ -602,7 +602,7 @@ <h3 id="metamodel-conformance-rules">Metamodel Conformance Rules</h3>
 <div class="md-dialog" data-md-component="dialog">
 <div class="md-dialog__inner md-typeset"></div>
 </div>
-<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
-<script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
+<script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
 <script src="https://unpkg.com/mermaid@8.8.0/dist/mermaid.min.js"></script><script>mermaid.initialize({});</script></body>
 </html>
\ No newline at end of file
diff --git a/docs/05validation/index.html b/docs/05validation/index.html
index 2aaaebd2..9e4f658a 100644
--- a/docs/05validation/index.html
+++ b/docs/05validation/index.html
@@ -6,14 +6,14 @@
 <meta charset="utf-8"/>
 <meta content="width=device-width,initial-scale=1" name="viewport"/>
 <link href="../assets/images/favicon.png" rel="icon"/>
-<meta content="mkdocs-1.3.1, mkdocs-material-8.3.9" name="generator"/>
+<meta content="mkdocs-1.4.2, mkdocs-material-8.5.10" name="generator"/>
 <title>Validation using Schemas - LinkML Model</title>
-<link href="../assets/stylesheets/main.1d29e8d0.min.css" rel="stylesheet"/>
-<link href="../assets/stylesheets/palette.cbb835fc.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/main.975780f9.min.css" rel="stylesheet"/>
+<link href="../assets/stylesheets/palette.2505c338.min.css" rel="stylesheet"/>
 <link crossorigin="" href="https://fonts.gstatic.com" rel="preconnect"/>
 <link href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&amp;display=fallback" rel="stylesheet"/>
 <style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
-<script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+<script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 </head>
 <body data-md-color-accent="amber" data-md-color-primary="teal" data-md-color-scheme="default" dir="ltr">
 <script>var palette=__md_get("__palette");if(palette&&"object"==typeof palette.color)for(var key of Object.keys(palette.color))document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
@@ -74,7 +74,7 @@
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12Z"></path></svg>
 </label>
 <nav aria-label="Search" class="md-search__options">
-<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" type="reset">
+<button aria-label="Clear" class="md-search__icon md-icon" tabindex="-1" title="Clear" type="reset">
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"></path></svg>
 </button>
 </nav>
@@ -207,8 +207,8 @@
       </a>
 </li>
 <li class="md-nav__item">
-<a class="md-nav__link" href="../SpecificationProfile.md">
-        SpecificationProfile
+<a class="md-nav__link" href="../SpecificationSubset/">
+        SpecificationSubset
       </a>
 </li>
 <li class="md-nav__item">
@@ -539,7 +539,7 @@ <h2 id="inference-of-new-values">Inference of new values</h2>
 <div class="md-dialog" data-md-component="dialog">
 <div class="md-dialog__inner md-typeset"></div>
 </div>
-<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
-<script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+<script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
+<script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
 <script src="https://unpkg.com/mermaid@8.8.0/dist/mermaid.min.js"></script><script>mermaid.initialize({});</script></body>
 </html>
\ No newline at end of file
diff --git a/docs/06mapping/index.html b/docs/06mapping/index.html
index 5b2c0d6f..4ec78b94 100644
--- a/docs/06mapping/index.html
+++ b/docs/06mapping/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -694,10 +698,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="translation-of-instance-graphs">Translation of instance graphs</h1>
@@ -835,10 +840,15 @@ <h3 id="translation-of-instance-graphs-to-rdf-graphs-via-json-ld">Translation of
 <h3 id="translation-of-instance-graphs-to-rdf-and-property-graphs">Translation of instance graphs to RDF* and property graphs</h3>
 <p>To be specified</p>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -865,11 +875,13 @@ <h3 id="translation-of-instance-graphs-to-rdf-and-property-graphs">Translation o
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/Annotation/index.html b/docs/Annotation/index.html
index 3ff37159..018b112f 100644
--- a/docs/Annotation/index.html
+++ b/docs/Annotation/index.html
@@ -352,7 +352,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../extension_value/">extension_value</a></td>
-<td>1..1 <br/> NONE</td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
 <td>the actual annotation</td>
 <td><a href="../Extension/">Extension</a></td>
 </tr>
diff --git a/docs/AnonymousClassExpression/index.html b/docs/AnonymousClassExpression/index.html
index 6c183076..4cafd134 100644
--- a/docs/AnonymousClassExpression/index.html
+++ b/docs/AnonymousClassExpression/index.html
@@ -373,22 +373,28 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
+<td><a href="../any_of/">any_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousClassExpression</a></td>
+<td>holds if at least one of the expressions hold</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
+</tr>
+<tr>
 <td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="./">AnonymousClassExpression</a></td>
 <td>holds if only one of the expressions hold</td>
 <td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../none_of/">none_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousClassExpression</a></td>
+<td>holds if none of the expressions hold</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../all_of/">all_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousClassExpression</a></td>
+<td>holds if all of the expressions hold</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
 <td><a href="../slot_conditions/">slot_conditions</a></td>
@@ -397,87 +403,69 @@ <h2 id="slots">Slots</h2>
 <td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
 <td><a href="../deprecated/">deprecated</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
 <td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if at least one of the expressions hold</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
-</tr>
-<tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -487,45 +475,39 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td><a href="../source/">source</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if all of the expressions hold</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -535,9 +517,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -547,21 +541,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if none of the expressions hold</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/AnonymousEnumExpression/index.html b/docs/AnonymousEnumExpression/index.html
index c8d4f4e4..4a9361b5 100644
--- a/docs/AnonymousEnumExpression/index.html
+++ b/docs/AnonymousEnumExpression/index.html
@@ -348,21 +348,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../concepts/">concepts</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of identifiers that are used to construct a set of permissible values</td>
+<td><a href="../code_set_tag/">code_set_tag</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the version tag of the enumeration code set</td>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../matches/">matches</a></td>
-<td>0..1 <br/> <a href="../MatchQuery/">MatchQuery</a></td>
-<td>Specifies a match query that is used to calculate the list of permissible val...</td>
+<td><a href="../code_set_version/">code_set_version</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the version identifier of the enumeration code set</td>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../minus/">minus</a></td>
-<td>0..* <br/> <a href="./">AnonymousEnumExpression</a></td>
-<td>An enum expression that yields a list of permissible values that are to be su...</td>
+<td><a href="../pv_formula/">pv_formula</a></td>
+<td>0..1 <br/> <a href="../PvFormulaOptions/">PvFormulaOptions</a></td>
+<td>Defines the specific formula to be used to generate the permissible values</td>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
@@ -378,15 +378,9 @@ <h2 id="slots">Slots</h2>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../pv_formula/">pv_formula</a></td>
-<td>0..1 <br/> <a href="../PvFormulaOptions/">PvFormulaOptions</a></td>
-<td>Defines the specific formula to be used to generate the permissible values</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
-</tr>
-<tr>
-<td><a href="../code_set_tag/">code_set_tag</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the version tag of the enumeration code set</td>
+<td><a href="../minus/">minus</a></td>
+<td>0..* <br/> <a href="./">AnonymousEnumExpression</a></td>
+<td>An enum expression that yields a list of permissible values that are to be su...</td>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
@@ -396,17 +390,23 @@ <h2 id="slots">Slots</h2>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../code_set_version/">code_set_version</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the version identifier of the enumeration code set</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
-</tr>
-<tr>
 <td><a href="../reachable_from/">reachable_from</a></td>
 <td>0..1 <br/> <a href="../ReachabilityQuery/">ReachabilityQuery</a></td>
 <td>Specifies a query for obtaining a list of permissible values based on graph r...</td>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
+<tr>
+<td><a href="../matches/">matches</a></td>
+<td>0..1 <br/> <a href="../MatchQuery/">MatchQuery</a></td>
+<td>Specifies a match query that is used to calculate the list of permissible val...</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
+</tr>
+<tr>
+<td><a href="../concepts/">concepts</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of identifiers that are used to construct a set of permissible values</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
+</tr>
 </tbody>
 </table>
 <h2 id="usages">Usages</h2>
diff --git a/docs/AnonymousExpression/index.html b/docs/AnonymousExpression/index.html
index b9c9245a..ee66a817 100644
--- a/docs/AnonymousExpression/index.html
+++ b/docs/AnonymousExpression/index.html
@@ -394,21 +394,21 @@ <h2 id="slots">Slots</h2>
 </thead>
 <tbody>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -418,81 +418,87 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../see_also/">see_also</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -502,27 +508,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -532,27 +532,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/AnonymousSlotExpression/index.html b/docs/AnonymousSlotExpression/index.html
index 4ff323c9..475e8a6b 100644
--- a/docs/AnonymousSlotExpression/index.html
+++ b/docs/AnonymousSlotExpression/index.html
@@ -387,64 +387,58 @@ <h2 id="slots">Slots</h2>
 </thead>
 <tbody>
 <tr>
-<td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if only one of the expressions hold</td>
+<td><a href="../range/">range</a></td>
+<td>0..1 <br/> <a href="../Element/">Element</a></td>
+<td>defines the type of the object of the slot</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../minimum_cardinality/">minimum_cardinality</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the minimum number of entries for a multivalued slot</td>
+<td><a href="../range_expression/">range_expression</a></td>
+<td>0..1 <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
+<td>A range that is described as a boolean expression combining existing ranges</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../enum_range/">enum_range</a></td>
+<td>0..1 <br/> <a href="../EnumExpression/">EnumExpression</a></td>
+<td>An inlined enumeration</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../inlined/">inlined</a></td>
+<td><a href="../required/">required</a></td>
 <td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>True means that keyed or identified slot appears in an outer structure by val...</td>
+<td>true means that the slot must be present in the loaded definition</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../equals_string_in/">equals_string_in</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>the slot must have range string and the value of the slot must equal one of t...</td>
+<td><a href="../recommended/">recommended</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>true means that the slot should be present in the loaded definition, but this...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../inlined/">inlined</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>True means that keyed or identified slot appears in an outer structure by val...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../inlined_as_list/">inlined_as_list</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>True means that an inlined slot is represented as a list of range instances</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../recommended/">recommended</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>true means that the slot should be present in the loaded definition, but this...</td>
+<td><a href="../minimum_value/">minimum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../maximum_value/">maximum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
 <td><a href="../pattern/">pattern</a></td>
@@ -453,112 +447,100 @@ <h2 id="slots">Slots</h2>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../equals_expression/">equals_expression</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the value of the slot must equal the value of the evaluated expression</td>
+<td><a href="../structured_pattern/">structured_pattern</a></td>
+<td>0..1 <br/> <a href="../PatternExpression/">PatternExpression</a></td>
+<td>the string value of the slot must conform to the regular expression in the pa...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../unit/">unit</a></td>
+<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
+<td>an encoding of a unit</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../implicit_prefix/">implicit_prefix</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../value_presence/">value_presence</a></td>
+<td>0..1 <br/> <a href="../PresenceEnum/">PresenceEnum</a></td>
+<td>if true then a value must be present (for lists there must be at least one va...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../implicit_prefix/">implicit_prefix</a></td>
+<td><a href="../equals_string/">equals_string</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
+<td>the slot must have range string and the value of the slot must equal the spec...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../equals_string_in/">equals_string_in</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>the slot must have range string and the value of the slot must equal one of t...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../equals_number/">equals_number</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the slot must have range of a number and the value of the slot must equal the...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if at least one of the expressions hold</td>
+<td><a href="../equals_expression/">equals_expression</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the value of the slot must equal the value of the evaluated expression</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../minimum_cardinality/">minimum_cardinality</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the minimum number of entries for a multivalued slot</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../maximum_cardinality/">maximum_cardinality</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the maximum number of entries for a multivalued slot</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../has_member/">has_member</a></td>
+<td>0..1 <br/> <a href="./">AnonymousSlotExpression</a></td>
+<td>the value of the slot is multivalued with at least one member satisfying the ...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../minimum_value/">minimum_value</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
+<td><a href="../all_members/">all_members</a></td>
+<td>0..1 <br/> <a href="./">AnonymousSlotExpression</a></td>
+<td>the value of the slot is multivalued with all members satisfying the conditio...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../structured_pattern/">structured_pattern</a></td>
-<td>0..1 <br/> <a href="../PatternExpression/">PatternExpression</a></td>
-<td>the string value of the slot must conform to the regular expression in the pa...</td>
+<td><a href="../none_of/">none_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousSlotExpression</a></td>
+<td>holds if none of the expressions hold</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../equals_string/">equals_string</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the slot must have range string and the value of the slot must equal the spec...</td>
+<td><a href="../exactly_one_of/">exactly_one_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousSlotExpression</a></td>
+<td>holds if only one of the expressions hold</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../any_of/">any_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousSlotExpression</a></td>
+<td>holds if at least one of the expressions hold</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../all_of/">all_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousSlotExpression</a></td>
+<td>holds if all of the expressions hold</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
 <td><a href="../extensions/">extensions</a></td>
@@ -567,40 +549,34 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../has_member/">has_member</a></td>
-<td>0..1 <br/> <a href="./">AnonymousSlotExpression</a></td>
-<td>the value of the slot is multivalued with at least one member satisfying the ...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../inlined_as_list/">inlined_as_list</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>True means that an inlined slot is represented as a list of range instances</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if all of the expressions hold</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../required/">required</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>true means that the slot must be present in the loaded definition</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../todos/">todos</a></td>
@@ -610,26 +586,14 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../all_members/">all_members</a></td>
-<td>0..1 <br/> <a href="./">AnonymousSlotExpression</a></td>
-<td>the value of the slot is multivalued with all members satisfying the conditio...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
-</tr>
-<tr>
-<td><a href="../enum_range/">enum_range</a></td>
-<td>0..1 <br/> <a href="../EnumExpression/">EnumExpression</a></td>
-<td>An inlined enumeration</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
-</tr>
-<tr>
-<td><a href="../aliases/">aliases</a></td>
+<td><a href="../comments/">comments</a></td>
 <td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -639,58 +603,100 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
 <td><a href="../imported_from/">imported_from</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
 <td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../value_presence/">value_presence</a></td>
-<td>0..1 <br/> <a href="../PresenceEnum/">PresenceEnum</a></td>
-<td>if true then a value must be present (for lists there must be at least one va...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../equals_number/">equals_number</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the slot must have range of a number and the value of the slot must equal the...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../range_expression/">range_expression</a></td>
-<td>0..1 <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
-<td>A range that is described as a boolean expression combining existing ranges</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../aliases/">aliases</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Alaternate names for the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if none of the expressions hold</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../unit/">unit</a></td>
-<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
-<td>an encoding of a unit</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../maximum_value/">maximum_value</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../maximum_cardinality/">maximum_cardinality</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the maximum number of entries for a multivalued slot</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../close_mappings/">close_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../rank/">rank</a></td>
@@ -698,12 +704,6 @@ <h2 id="slots">Slots</h2>
 <td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
-<tr>
-<td><a href="../range/">range</a></td>
-<td>0..1 <br/> <a href="../Element/">Element</a></td>
-<td>defines the type of the object of the slot</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
-</tr>
 </tbody>
 </table>
 <h2 id="usages">Usages</h2>
diff --git a/docs/AnonymousTypeExpression/index.html b/docs/AnonymousTypeExpression/index.html
index 491c0d48..53607112 100644
--- a/docs/AnonymousTypeExpression/index.html
+++ b/docs/AnonymousTypeExpression/index.html
@@ -343,15 +343,9 @@ <h2 id="slots">Slots</h2>
 </thead>
 <tbody>
 <tr>
-<td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if at least one of the expressions hold</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
-</tr>
-<tr>
-<td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if only one of the expressions hold</td>
+<td><a href="../pattern/">pattern</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the string value of the slot must conform to this regular expression expresse...</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
@@ -361,21 +355,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../minimum_value/">minimum_value</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
+<td><a href="../unit/">unit</a></td>
+<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
+<td>an encoding of a unit</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../equals_string/">equals_string</a></td>
+<td><a href="../implicit_prefix/">implicit_prefix</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the slot must have range string and the value of the slot must equal the spec...</td>
+<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../implicit_prefix/">implicit_prefix</a></td>
+<td><a href="../equals_string/">equals_string</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
+<td>the slot must have range string and the value of the slot must equal the spec...</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
@@ -391,33 +385,39 @@ <h2 id="slots">Slots</h2>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if none of the expressions hold</td>
+<td><a href="../minimum_value/">minimum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if all of the expressions hold</td>
+<td><a href="../maximum_value/">maximum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../unit/">unit</a></td>
-<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
-<td>an encoding of a unit</td>
+<td><a href="../none_of/">none_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousTypeExpression</a></td>
+<td>holds if none of the expressions hold</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../maximum_value/">maximum_value</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
+<td><a href="../exactly_one_of/">exactly_one_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousTypeExpression</a></td>
+<td>holds if only one of the expressions hold</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../pattern/">pattern</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the string value of the slot must conform to this regular expression expresse...</td>
+<td><a href="../any_of/">any_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousTypeExpression</a></td>
+<td>holds if at least one of the expressions hold</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
+</tr>
+<tr>
+<td><a href="../all_of/">all_of</a></td>
+<td>0..* <br/> <a href="./">AnonymousTypeExpression</a></td>
+<td>holds if all of the expressions hold</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 </tbody>
diff --git a/docs/Basic/index.html b/docs/Basic/index.html
index dceeaf83..9a5a137f 100644
--- a/docs/Basic/index.html
+++ b/docs/Basic/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -577,10 +581,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="basic">Basic</h1>
@@ -592,10 +597,15 @@ <h3 id="schema-source">Schema Source</h3>
 <li>from schema: https://w3id.org/linkml/meta</li>
 </ul>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -622,11 +632,13 @@ <h3 id="schema-source">Schema Source</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/ClassDefinition/index.html b/docs/ClassDefinition/index.html
index 65d711ed..1f1d8281 100644
--- a/docs/ClassDefinition/index.html
+++ b/docs/ClassDefinition/index.html
@@ -497,58 +497,64 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../mixin/">mixin</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>Indicates the class or slot is intended to be inherited from without being an...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../any_of/">any_of</a></td>
+<td>0..* <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
+<td>holds if at least one of the expressions hold</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../status/">status</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>status of the element</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../exactly_one_of/">exactly_one_of</a></td>
+<td>0..* <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
+<td>holds if only one of the expressions hold</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../none_of/">none_of</a></td>
+<td>0..* <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
+<td>holds if none of the expressions hold</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../all_of/">all_of</a></td>
+<td>0..* <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
+<td>holds if all of the expressions hold</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../slot_conditions/">slot_conditions</a></td>
+<td>0..* <br/> <a href="../SlotDefinition/">SlotDefinition</a></td>
+<td>expresses constraints on a group of slots for a class expression</td>
+<td><a href="../ClassExpression/">ClassExpression</a></td>
 </tr>
 <tr>
-<td><a href="../last_updated_on/">last_updated_on</a></td>
-<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
-<td>time at which the element was last updated</td>
+<td><a href="../is_a/">is_a</a></td>
+<td>0..1 <br/> <a href="./">ClassDefinition</a></td>
+<td>A primary parent class from which inheritable metaslots are propagated</td>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../abstract/">abstract</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>Indicates the class or slot cannot be directly instantiated and is intended f...</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../mixin/">mixin</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>Indicates the class or slot is intended to be inherited from without being an...</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../mixins/">mixins</a></td>
+<td>0..* <br/> <a href="./">ClassDefinition</a></td>
+<td>A collection of secondary parent mixin classes from which inheritable metaslo...</td>
+<td><a href="../Definition/">Definition</a></td>
+</tr>
+<tr>
+<td><a href="../apply_to/">apply_to</a></td>
+<td>0..* <br/> <a href="./">ClassDefinition</a></td>
+<td>Used to extend class or slot definitions</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
 <td><a href="../values_from/">values_from</a></td>
@@ -557,10 +563,10 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../created_by/">created_by</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>agent that created the element</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
 <td><a href="../created_on/">created_on</a></td>
@@ -569,10 +575,34 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if at least one of the expressions hold</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
+<td><a href="../last_updated_on/">last_updated_on</a></td>
+<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
+<td>time at which the element was last updated</td>
+<td><a href="../Definition/">Definition</a></td>
+</tr>
+<tr>
+<td><a href="../modified_by/">modified_by</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>agent that modified the element</td>
+<td><a href="../Definition/">Definition</a></td>
+</tr>
+<tr>
+<td><a href="../status/">status</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>status of the element</td>
+<td><a href="../Definition/">Definition</a></td>
+</tr>
+<tr>
+<td><a href="../string_serialization/">string_serialization</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Used on a slot that stores the string serialization of the containing object</td>
+<td><a href="../Definition/">Definition</a></td>
+</tr>
+<tr>
+<td><a href="../name/">name</a></td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
+<td>the unique name of the element within the context of the schema</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
 <td><a href="../id_prefixes/">id_prefixes</a></td>
@@ -581,16 +611,22 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../definition_uri/">definition_uri</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>the "native" URI of the element</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../local_names/">local_names</a></td>
+<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td></td>
+<td><a href="../Element/">Element</a></td>
+</tr>
+<tr>
+<td><a href="../conforms_to/">conforms_to</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>An established standard to which the element conforms</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
 <td><a href="../extensions/">extensions</a></td>
@@ -599,27 +635,33 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
+</tr>
+<tr>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../abstract/">abstract</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>Indicates the class or slot cannot be directly instantiated and is intended f...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../apply_to/">apply_to</a></td>
-<td>0..* <br/> <a href="../Definition/">Definition</a></td>
-<td>Used to extend class or slot definitions</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -629,46 +671,46 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../aliases/">aliases</a></td>
+<td><a href="../notes/">notes</a></td>
 <td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../local_names/">local_names</a></td>
-<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
-<td></td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mixins/">mixins</a></td>
-<td>0..* <br/> <a href="../Definition/">Definition</a></td>
-<td>A collection of secondary parent classes or slots from which inheritable meta...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
-<td>the unique name of the element within the context of the schema</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../is_a/">is_a</a></td>
-<td>0..1 <br/> <a href="../Definition/">Definition</a></td>
-<td>A primary parent class or slot from which inheritable metaslots are propagate...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if only one of the expressions hold</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../in_language/">in_language</a></td>
@@ -677,39 +719,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../slot_conditions/">slot_conditions</a></td>
-<td>0..* <br/> <a href="../SlotDefinition/">SlotDefinition</a></td>
-<td>expresses constraints on a group of slots for a class expression</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
+<td><a href="../see_also/">see_also</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>a reference</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../definition_uri/">definition_uri</a></td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>the "native" URI of the element</td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../modified_by/">modified_by</a></td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>agent that modified the element</td>
-<td><a href="../Definition/">Definition</a></td>
-</tr>
-<tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../aliases/">aliases</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Alaternate names for the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -719,64 +749,40 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../string_serialization/">string_serialization</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Used on a slot that stores the string serialization of the containing object</td>
-<td><a href="../Definition/">Definition</a></td>
-</tr>
-<tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td><a href="../mappings/">mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
+<td><a href="../close_mappings/">close_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if all of the expressions hold</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
-</tr>
-<tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
-<td>An established standard to which the element conforms</td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
-<td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if none of the expressions hold</td>
-<td><a href="../ClassExpression/">ClassExpression</a></td>
-</tr>
-<tr>
-<td><a href="../created_by/">created_by</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>agent that created the element</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../rank/">rank</a></td>
@@ -784,12 +790,6 @@ <h2 id="slots">Slots</h2>
 <td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
-<tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
 </tbody>
 </table>
 <h2 id="usages">Usages</h2>
diff --git a/docs/ClassExpression/index.html b/docs/ClassExpression/index.html
index 443ff840..c69b4f08 100644
--- a/docs/ClassExpression/index.html
+++ b/docs/ClassExpression/index.html
@@ -335,25 +335,25 @@ <h2 id="slots">Slots</h2>
 <tbody>
 <tr>
 <td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if at least one of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if only one of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if none of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if all of the expressions hold</td>
 <td>direct</td>
 </tr>
diff --git a/docs/ClassRule/index.html b/docs/ClassRule/index.html
index 1538c78e..fb6fc7c3 100644
--- a/docs/ClassRule/index.html
+++ b/docs/ClassRule/index.html
@@ -417,9 +417,21 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
+</tr>
+<tr>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
+</tr>
+<tr>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -429,147 +441,135 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
 <td><a href="../in_subset/">in_subset</a></td>
 <td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
 <td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
+<td><a href="../imported_from/">imported_from</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../aliases/">aliases</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Alaternate names for the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td><a href="../mappings/">mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../aliases/">aliases</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
+<td><a href="../close_mappings/">close_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/CommonMetadata/index.html b/docs/CommonMetadata/index.html
index 4377530b..b0a63f1f 100644
--- a/docs/CommonMetadata/index.html
+++ b/docs/CommonMetadata/index.html
@@ -357,7 +357,7 @@ <h2 id="slots">Slots</h2>
 <tbody>
 <tr>
 <td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
 <td>a description of the element's purpose and use</td>
 <td>direct</td>
 </tr>
@@ -369,7 +369,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>the official title of the element</td>
 <td>direct</td>
 </tr>
@@ -387,13 +387,13 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>editorial notes about an element intended for internal consumption</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>notes and comments about an element intended for external consumption</td>
 <td>direct</td>
 </tr>
diff --git a/docs/Definition/index.html b/docs/Definition/index.html
index 34f822dd..955c140d 100644
--- a/docs/Definition/index.html
+++ b/docs/Definition/index.html
@@ -513,64 +513,64 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../name/">name</a></td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
+<td>the unique name of the element within the context of the schema</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../id_prefixes/">id_prefixes</a></td>
+<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
+<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
+<td><a href="../definition_uri/">definition_uri</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td>the "native" URI of the element</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../local_names/">local_names</a></td>
+<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td></td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../definition_uri/">definition_uri</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>the "native" URI of the element</td>
+<td><a href="../conforms_to/">conforms_to</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>An established standard to which the element conforms</td>
 <td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../deprecated/">deprecated</a></td>
@@ -579,39 +579,33 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../id_prefixes/">id_prefixes</a></td>
-<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
-<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -621,39 +615,39 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -663,16 +657,22 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../local_names/">local_names</a></td>
-<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
-<td></td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../close_mappings/">close_mappings</a></td>
@@ -681,27 +681,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
-<td>An established standard to which the element conforms</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
-<td>the unique name of the element within the context of the schema</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/Element/index.html b/docs/Element/index.html
index ffd4967f..2c4d4bfa 100644
--- a/docs/Element/index.html
+++ b/docs/Element/index.html
@@ -424,7 +424,7 @@ <h2 id="slots">Slots</h2>
 <tbody>
 <tr>
 <td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
 <td>the unique name of the element within the context of the schema</td>
 <td>direct</td>
 </tr>
@@ -448,14 +448,26 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>An established standard to which the element conforms</td>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
+</tr>
+<tr>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
+</tr>
+<tr>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -465,141 +477,135 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
 <td><a href="../in_subset/">in_subset</a></td>
 <td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
 <td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
+<td><a href="../imported_from/">imported_from</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../aliases/">aliases</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Alaternate names for the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td><a href="../mappings/">mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../close_mappings/">close_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../aliases/">aliases</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -608,12 +614,6 @@ <h2 id="slots">Slots</h2>
 <td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
-<tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
 </tbody>
 </table>
 <h2 id="usages">Usages</h2>
diff --git a/docs/EnumDefinition/index.html b/docs/EnumDefinition/index.html
index 613c768a..ca78f6d2 100644
--- a/docs/EnumDefinition/index.html
+++ b/docs/EnumDefinition/index.html
@@ -411,58 +411,46 @@ <h2 id="slots">Slots</h2>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../mixin/">mixin</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>Indicates the class or slot is intended to be inherited from without being an...</td>
-<td><a href="../Definition/">Definition</a></td>
-</tr>
-<tr>
-<td><a href="../in_language/">in_language</a></td>
+<td><a href="../code_set_tag/">code_set_tag</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../status/">status</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>status of the element</td>
-<td><a href="../Definition/">Definition</a></td>
+<td>the version tag of the enumeration code set</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../code_set_version/">code_set_version</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the version identifier of the enumeration code set</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../inherits/">inherits</a></td>
-<td>0..* <br/> <a href="./">EnumDefinition</a></td>
-<td>An enum definition that is used as the basis to create a new enum</td>
+<td><a href="../pv_formula/">pv_formula</a></td>
+<td>0..1 <br/> <a href="../PvFormulaOptions/">PvFormulaOptions</a></td>
+<td>Defines the specific formula to be used to generate the permissible values</td>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../permissible_values/">permissible_values</a></td>
+<td>0..* <br/> <a href="../PermissibleValue/">PermissibleValue</a></td>
+<td>A list of possible values for a slot range</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../last_updated_on/">last_updated_on</a></td>
-<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
-<td>time at which the element was last updated</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../include/">include</a></td>
+<td>0..* <br/> <a href="../AnonymousEnumExpression/">AnonymousEnumExpression</a></td>
+<td>An enum expression that yields a list of permissible values that are to be in...</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../definition_uri/">definition_uri</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>the "native" URI of the element</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../minus/">minus</a></td>
+<td>0..* <br/> <a href="../AnonymousEnumExpression/">AnonymousEnumExpression</a></td>
+<td>An enum expression that yields a list of permissible values that are to be su...</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../inherits/">inherits</a></td>
+<td>0..* <br/> <a href="./">EnumDefinition</a></td>
+<td>An enum definition that is used as the basis to create a new enum</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
 <td><a href="../reachable_from/">reachable_from</a></td>
@@ -471,58 +459,46 @@ <h2 id="slots">Slots</h2>
 <td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../matches/">matches</a></td>
+<td>0..1 <br/> <a href="../MatchQuery/">MatchQuery</a></td>
+<td>Specifies a match query that is used to calculate the list of permissible val...</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../concepts/">concepts</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of identifiers that are used to construct a set of permissible values</td>
+<td><a href="../EnumExpression/">EnumExpression</a></td>
 </tr>
 <tr>
-<td><a href="../modified_by/">modified_by</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>agent that modified the element</td>
+<td><a href="../is_a/">is_a</a></td>
+<td>0..1 <br/> <a href="../Definition/">Definition</a></td>
+<td>A primary parent class or slot from which inheritable metaslots are propagate...</td>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../concepts/">concepts</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of identifiers that are used to construct a set of permissible values</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
+<td><a href="../abstract/">abstract</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>Indicates the class or slot cannot be directly instantiated and is intended f...</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../mixin/">mixin</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>Indicates the class or slot is intended to be inherited from without being an...</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../matches/">matches</a></td>
-<td>0..1 <br/> <a href="../MatchQuery/">MatchQuery</a></td>
-<td>Specifies a match query that is used to calculate the list of permissible val...</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
+<td><a href="../mixins/">mixins</a></td>
+<td>0..* <br/> <a href="../Definition/">Definition</a></td>
+<td>A collection of secondary parent classes or slots from which inheritable meta...</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../apply_to/">apply_to</a></td>
+<td>0..* <br/> <a href="../Definition/">Definition</a></td>
+<td>Used to extend class or slot definitions</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
 <td><a href="../values_from/">values_from</a></td>
@@ -531,46 +507,46 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../include/">include</a></td>
-<td>0..* <br/> <a href="../AnonymousEnumExpression/">AnonymousEnumExpression</a></td>
-<td>An enum expression that yields a list of permissible values that are to be in...</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
+<td><a href="../created_by/">created_by</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>agent that created the element</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../created_on/">created_on</a></td>
+<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
+<td>time at which the element was created</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../pv_formula/">pv_formula</a></td>
-<td>0..1 <br/> <a href="../PvFormulaOptions/">PvFormulaOptions</a></td>
-<td>Defines the specific formula to be used to generate the permissible values</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
+<td><a href="../last_updated_on/">last_updated_on</a></td>
+<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
+<td>time at which the element was last updated</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../modified_by/">modified_by</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>agent that modified the element</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../string_serialization/">string_serialization</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Used on a slot that stores the string serialization of the containing object</td>
+<td><a href="../status/">status</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>status of the element</td>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../created_on/">created_on</a></td>
-<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
-<td>time at which the element was created</td>
+<td><a href="../string_serialization/">string_serialization</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Used on a slot that stores the string serialization of the containing object</td>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../name/">name</a></td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
+<td>the unique name of the element within the context of the schema</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
 <td><a href="../id_prefixes/">id_prefixes</a></td>
@@ -579,40 +555,22 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td><a href="../definition_uri/">definition_uri</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../code_set_version/">code_set_version</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the version identifier of the enumeration code set</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
-</tr>
-<tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td>the "native" URI of the element</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../local_names/">local_names</a></td>
+<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td></td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../minus/">minus</a></td>
-<td>0..* <br/> <a href="../AnonymousEnumExpression/">AnonymousEnumExpression</a></td>
-<td>An enum expression that yields a list of permissible values that are to be su...</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
+<td><a href="../conforms_to/">conforms_to</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>An established standard to which the element conforms</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
 <td><a href="../extensions/">extensions</a></td>
@@ -621,34 +579,34 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../abstract/">abstract</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>Indicates the class or slot cannot be directly instantiated and is intended f...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../apply_to/">apply_to</a></td>
-<td>0..* <br/> <a href="../Definition/">Definition</a></td>
-<td>Used to extend class or slot definitions</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../code_set_tag/">code_set_tag</a></td>
+<td><a href="../deprecated/">deprecated</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the version tag of the enumeration code set</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
+<td>Description of why and when this element will no longer be used</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../todos/">todos</a></td>
@@ -658,14 +616,14 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../aliases/">aliases</a></td>
+<td><a href="../comments/">comments</a></td>
 <td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -675,63 +633,105 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../local_names/">local_names</a></td>
-<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td></td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mixins/">mixins</a></td>
-<td>0..* <br/> <a href="../Definition/">Definition</a></td>
-<td>A collection of secondary parent classes or slots from which inheritable meta...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
-<td>An established standard to which the element conforms</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../permissible_values/">permissible_values</a></td>
-<td>0..* <br/> <a href="../PermissibleValue/">PermissibleValue</a></td>
-<td>A list of possible values for a slot range</td>
-<td><a href="../EnumExpression/">EnumExpression</a></td>
+<td><a href="../aliases/">aliases</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Alaternate names for the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
-<td>the unique name of the element within the context of the schema</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../created_by/">created_by</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>agent that created the element</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../is_a/">is_a</a></td>
-<td>0..1 <br/> <a href="../Definition/">Definition</a></td>
-<td>A primary parent class or slot from which inheritable metaslots are propagate...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../close_mappings/">close_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/Example/index.html b/docs/Example/index.html
index 32c247e1..6489c3a7 100644
--- a/docs/Example/index.html
+++ b/docs/Example/index.html
@@ -324,13 +324,13 @@ <h2 id="slots">Slots</h2>
 <tbody>
 <tr>
 <td><a href="../value/">value</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>example value</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../value_description/">value_description</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>description of what the value is doing</td>
 <td>direct</td>
 </tr>
diff --git a/docs/Extension/index.html b/docs/Extension/index.html
index c7cbdffd..12283b0b 100644
--- a/docs/Extension/index.html
+++ b/docs/Extension/index.html
@@ -344,7 +344,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../extension_value/">extension_value</a></td>
-<td>1..1 <br/> NONE</td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
 <td>the actual annotation</td>
 <td>direct</td>
 </tr>
diff --git a/docs/ImportExpression/index.html b/docs/ImportExpression/index.html
index a7b5c656..63104fc8 100644
--- a/docs/ImportExpression/index.html
+++ b/docs/ImportExpression/index.html
@@ -381,21 +381,21 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -405,81 +405,87 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../see_also/">see_also</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -489,27 +495,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -519,27 +519,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/Minimal/index.html b/docs/Minimal/index.html
index 81b27225..b27c9731 100644
--- a/docs/Minimal/index.html
+++ b/docs/Minimal/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -577,10 +581,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="minimal">Minimal</h1>
@@ -592,10 +597,15 @@ <h3 id="schema-source">Schema Source</h3>
 <li>from schema: https://w3id.org/linkml/meta</li>
 </ul>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -622,11 +632,13 @@ <h3 id="schema-source">Schema Source</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/ObjectOriented/index.html b/docs/ObjectOriented/index.html
index 413f9716..36be87a5 100644
--- a/docs/ObjectOriented/index.html
+++ b/docs/ObjectOriented/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -577,10 +581,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="objectoriented">ObjectOriented</h1>
@@ -592,10 +597,15 @@ <h3 id="schema-source">Schema Source</h3>
 <li>from schema: https://w3id.org/linkml/meta</li>
 </ul>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -622,11 +632,13 @@ <h3 id="schema-source">Schema Source</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/Owl/index.html b/docs/Owl/index.html
index b81c3665..949e0c79 100644
--- a/docs/Owl/index.html
+++ b/docs/Owl/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -577,10 +581,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="owl">Owl</h1>
@@ -592,10 +597,15 @@ <h3 id="schema-source">Schema Source</h3>
 <li>from schema: https://w3id.org/linkml/meta</li>
 </ul>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -622,11 +632,13 @@ <h3 id="schema-source">Schema Source</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/PathExpression/index.html b/docs/PathExpression/index.html
index d32bab0e..d105c0ab 100644
--- a/docs/PathExpression/index.html
+++ b/docs/PathExpression/index.html
@@ -376,25 +376,25 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if none of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if at least one of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if all of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if only one of the expressions hold</td>
 <td>direct</td>
 </tr>
@@ -417,9 +417,21 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
+</tr>
+<tr>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
+</tr>
+<tr>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -429,141 +441,135 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
 <td><a href="../in_subset/">in_subset</a></td>
 <td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
 <td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
+<td><a href="../imported_from/">imported_from</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../aliases/">aliases</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Alaternate names for the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td><a href="../mappings/">mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../close_mappings/">close_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../aliases/">aliases</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -572,12 +578,6 @@ <h2 id="slots">Slots</h2>
 <td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
-<tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
 </tbody>
 </table>
 <h2 id="usages">Usages</h2>
diff --git a/docs/PatternExpression/index.html b/docs/PatternExpression/index.html
index 1c429ac9..75efc9b6 100644
--- a/docs/PatternExpression/index.html
+++ b/docs/PatternExpression/index.html
@@ -381,21 +381,21 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -405,81 +405,87 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../see_also/">see_also</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -489,27 +495,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -519,27 +519,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/PermissibleValue/index.html b/docs/PermissibleValue/index.html
index 8f6c8ae0..ad881a91 100644
--- a/docs/PermissibleValue/index.html
+++ b/docs/PermissibleValue/index.html
@@ -375,7 +375,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
 <td>a description of the element's purpose and use</td>
 <td>direct</td>
 </tr>
@@ -392,99 +392,105 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
+</tr>
+<tr>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../see_also/">see_also</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -494,27 +500,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -524,27 +524,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/RelationalModel/index.html b/docs/RelationalModel/index.html
index 245b4671..b77286ef 100644
--- a/docs/RelationalModel/index.html
+++ b/docs/RelationalModel/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -108,6 +110,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -117,6 +120,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -142,7 +146,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -460,8 +464,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -577,10 +581,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
 <h1 id="relationalmodel">RelationalModel</h1>
@@ -592,10 +597,15 @@ <h3 id="schema-source">Schema Source</h3>
 <li>from schema: https://w3id.org/linkml/meta</li>
 </ul>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -622,11 +632,13 @@ <h3 id="schema-source">Schema Source</h3>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "..", "features": [], "search": "../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/docs/SchemaDefinition/index.html b/docs/SchemaDefinition/index.html
index 9c2aaac7..d4254f34 100644
--- a/docs/SchemaDefinition/index.html
+++ b/docs/SchemaDefinition/index.html
@@ -406,7 +406,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../version/">version</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>particular version of schema</td>
 <td>direct</td>
 </tr>
@@ -418,7 +418,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../license/">license</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>license for the schema</td>
 <td>direct</td>
 </tr>
@@ -436,7 +436,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../default_curi_maps/">default_curi_maps</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes...</td>
 <td>direct</td>
 </tr>
@@ -484,13 +484,13 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../metamodel_version/">metamodel_version</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>Version of the metamodel used to load the schema</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../source_file/">source_file</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>name, uri or description of the source of the schema</td>
 <td>direct</td>
 </tr>
@@ -537,22 +537,16 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../name/">name</a></td>
+<td>1..1 <br/> <a href="../Ncname/">Ncname</a></td>
+<td>a unique name for the schema that is both human-readable and consists of only...</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../id_prefixes/">id_prefixes</a></td>
+<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
+<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
 <td><a href="../definition_uri/">definition_uri</a></td>
@@ -561,40 +555,46 @@ <h2 id="slots">Slots</h2>
 <td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../local_names/">local_names</a></td>
+<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td></td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../conforms_to/">conforms_to</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>An established standard to which the element conforms</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
+</tr>
+<tr>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../deprecated/">deprecated</a></td>
@@ -603,39 +603,33 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../id_prefixes/">id_prefixes</a></td>
-<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
-<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -645,15 +639,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -663,69 +669,63 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
+<td><a href="../aliases/">aliases</a></td>
 <td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td>Alaternate names for the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../aliases/">aliases</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../local_names/">local_names</a></td>
-<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
-<td></td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
 <td><a href="../close_mappings/">close_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
 <td>A list of terms from different schemas or terminology systems that have close...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
-<td>An established standard to which the element conforms</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
-<td>the unique name of the element within the context of the schema</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/SlotDefinition/index.html b/docs/SlotDefinition/index.html
index 31f6281a..1cb7bec5 100644
--- a/docs/SlotDefinition/index.html
+++ b/docs/SlotDefinition/index.html
@@ -451,7 +451,7 @@ <h2 id="slots">Slots</h2>
 <tbody>
 <tr>
 <td><a href="../singular_name/">singular_name</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>a name that is used in the singular form</td>
 <td>direct</td>
 </tr>
@@ -553,37 +553,37 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../symmetric/">symmetric</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
 <td>If s is symmetric, and i</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../reflexive/">reflexive</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
 <td>If s is reflexive, then i</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../locally_reflexive/">locally_reflexive</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
 <td>If s is locally_reflexive, then i</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../irreflexive/">irreflexive</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
 <td>If s is irreflexive, then there exists no i such i</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../asymmetric/">asymmetric</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
 <td>If s is antisymmetric, and i</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../transitive/">transitive</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
 <td>If s is transitive, and i</td>
 <td>direct</td>
 </tr>
@@ -607,7 +607,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../reflexive_transitive_form_of/">reflexive_transitive_form_of</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="./">SlotDefinition</a></td>
 <td>transitive_form_of including the reflexive case</td>
 <td>direct</td>
 </tr>
@@ -672,298 +672,322 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../mixin/">mixin</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>Indicates the class or slot is intended to be inherited from without being an...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../range/">range</a></td>
+<td>0..1 <br/> <a href="../Element/">Element</a></td>
+<td>defines the type of the object of the slot</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../minimum_cardinality/">minimum_cardinality</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the minimum number of entries for a multivalued slot</td>
+<td><a href="../range_expression/">range_expression</a></td>
+<td>0..1 <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
+<td>A range that is described as a boolean expression combining existing ranges</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../enum_range/">enum_range</a></td>
+<td>0..1 <br/> <a href="../EnumExpression/">EnumExpression</a></td>
+<td>An inlined enumeration</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../status/">status</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>status of the element</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../required/">required</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>true means that the slot must be present in the loaded definition</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../equals_string_in/">equals_string_in</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>the slot must have range string and the value of the slot must equal one of t...</td>
+<td><a href="../recommended/">recommended</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>true means that the slot should be present in the loaded definition, but this...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../inlined/">inlined</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>True means that keyed or identified slot appears in an outer structure by val...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../inlined_as_list/">inlined_as_list</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>True means that an inlined slot is represented as a list of range instances</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../last_updated_on/">last_updated_on</a></td>
-<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
-<td>time at which the element was last updated</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../minimum_value/">minimum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../maximum_value/">maximum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../equals_expression/">equals_expression</a></td>
+<td><a href="../pattern/">pattern</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the value of the slot must equal the value of the evaluated expression</td>
+<td>the string value of the slot must conform to this regular expression expresse...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../structured_pattern/">structured_pattern</a></td>
+<td>0..1 <br/> <a href="../PatternExpression/">PatternExpression</a></td>
+<td>the string value of the slot must conform to the regular expression in the pa...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../unit/">unit</a></td>
+<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
+<td>an encoding of a unit</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../values_from/">values_from</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>The identifier of a "value set" -- a set of identifiers that form the possibl...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../implicit_prefix/">implicit_prefix</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../value_presence/">value_presence</a></td>
+<td>0..1 <br/> <a href="../PresenceEnum/">PresenceEnum</a></td>
+<td>if true then a value must be present (for lists there must be at least one va...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../created_on/">created_on</a></td>
-<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
-<td>time at which the element was created</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../equals_string/">equals_string</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the slot must have range string and the value of the slot must equal the spec...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if at least one of the expressions hold</td>
+<td><a href="../equals_string_in/">equals_string_in</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>the slot must have range string and the value of the slot must equal one of t...</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../id_prefixes/">id_prefixes</a></td>
-<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
-<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../equals_number/">equals_number</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the slot must have range of a number and the value of the slot must equal the...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../minimum_value/">minimum_value</a></td>
+<td><a href="../equals_expression/">equals_expression</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the value of the slot must equal the value of the evaluated expression</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
+</tr>
+<tr>
+<td><a href="../minimum_cardinality/">minimum_cardinality</a></td>
 <td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
+<td>the minimum number of entries for a multivalued slot</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../maximum_cardinality/">maximum_cardinality</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the maximum number of entries for a multivalued slot</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../has_member/">has_member</a></td>
+<td>0..1 <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
+<td>the value of the slot is multivalued with at least one member satisfying the ...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../all_members/">all_members</a></td>
+<td>0..1 <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
+<td>the value of the slot is multivalued with all members satisfying the conditio...</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../none_of/">none_of</a></td>
+<td>0..* <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
+<td>holds if none of the expressions hold</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
-<td><a href="../has_member/">has_member</a></td>
-<td>0..1 <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
-<td>the value of the slot is multivalued with at least one member satisfying the ...</td>
+<td><a href="../exactly_one_of/">exactly_one_of</a></td>
+<td>0..* <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
+<td>holds if only one of the expressions hold</td>
 <td><a href="../SlotExpression/">SlotExpression</a></td>
 </tr>
 <tr>
+<td><a href="../any_of/">any_of</a></td>
+<td>0..* <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
+<td>holds if at least one of the expressions hold</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
+</tr>
+<tr>
+<td><a href="../all_of/">all_of</a></td>
+<td>0..* <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
+<td>holds if all of the expressions hold</td>
+<td><a href="../SlotExpression/">SlotExpression</a></td>
+</tr>
+<tr>
+<td><a href="../is_a/">is_a</a></td>
+<td>0..1 <br/> <a href="./">SlotDefinition</a></td>
+<td>A primary parent slot from which inheritable metaslots are propagated</td>
+<td><a href="../Definition/">Definition</a></td>
+</tr>
+<tr>
 <td><a href="../abstract/">abstract</a></td>
 <td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
 <td>Indicates the class or slot cannot be directly instantiated and is intended f...</td>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../apply_to/">apply_to</a></td>
-<td>0..* <br/> <a href="../Definition/">Definition</a></td>
-<td>Used to extend class or slot definitions</td>
+<td><a href="../mixin/">mixin</a></td>
+<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
+<td>Indicates the class or slot is intended to be inherited from without being an...</td>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
-<tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../mixins/">mixins</a></td>
+<td>0..* <br/> <a href="./">SlotDefinition</a></td>
+<td>A collection of secondary parent mixin slots from which inheritable metaslots...</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../all_members/">all_members</a></td>
-<td>0..1 <br/> <a href="../AnonymousSlotExpression/">AnonymousSlotExpression</a></td>
-<td>the value of the slot is multivalued with all members satisfying the conditio...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../apply_to/">apply_to</a></td>
+<td>0..* <br/> <a href="./">SlotDefinition</a></td>
+<td>Used to extend class or slot definitions</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../enum_range/">enum_range</a></td>
-<td>0..1 <br/> <a href="../EnumExpression/">EnumExpression</a></td>
-<td>An inlined enumeration</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../values_from/">values_from</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>The identifier of a "value set" -- a set of identifiers that form the possibl...</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../aliases/">aliases</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Alaternate names for the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../created_by/">created_by</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>agent that created the element</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../local_names/">local_names</a></td>
-<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
-<td></td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../created_on/">created_on</a></td>
+<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
+<td>time at which the element was created</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../last_updated_on/">last_updated_on</a></td>
+<td>0..1 <br/> <a href="../Datetime/">Datetime</a></td>
+<td>time at which the element was last updated</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../value_presence/">value_presence</a></td>
-<td>0..1 <br/> <a href="../PresenceEnum/">PresenceEnum</a></td>
-<td>if true then a value must be present (for lists there must be at least one va...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../modified_by/">modified_by</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>agent that modified the element</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../mixins/">mixins</a></td>
-<td>0..* <br/> <a href="../Definition/">Definition</a></td>
-<td>A collection of secondary parent classes or slots from which inheritable meta...</td>
+<td><a href="../status/">status</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>status of the element</td>
 <td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
-<td><a href="../equals_number/">equals_number</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the slot must have range of a number and the value of the slot must equal the...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../string_serialization/">string_serialization</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Used on a slot that stores the string serialization of the containing object</td>
+<td><a href="../Definition/">Definition</a></td>
 </tr>
 <tr>
 <td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
 <td>the unique name of the element within the context of the schema</td>
 <td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../unit/">unit</a></td>
-<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
-<td>an encoding of a unit</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../id_prefixes/">id_prefixes</a></td>
+<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
+<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../maximum_value/">maximum_value</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../definition_uri/">definition_uri</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>the "native" URI of the element</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../maximum_cardinality/">maximum_cardinality</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the maximum number of entries for a multivalued slot</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../local_names/">local_names</a></td>
+<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td></td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../is_a/">is_a</a></td>
-<td>0..1 <br/> <a href="../Definition/">Definition</a></td>
-<td>A primary parent class or slot from which inheritable metaslots are propagate...</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../conforms_to/">conforms_to</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>An established standard to which the element conforms</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../range/">range</a></td>
-<td>0..1 <br/> <a href="../Element/">Element</a></td>
-<td>defines the type of the object of the slot</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if only one of the expressions hold</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../inlined/">inlined</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>True means that keyed or identified slot appears in an outer structure by val...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../recommended/">recommended</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>true means that the slot should be present in the loaded definition, but this...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../definition_uri/">definition_uri</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>the "native" URI of the element</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../pattern/">pattern</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the string value of the slot must conform to this regular expression expresse...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
+<td>0..* <br/> <a href="../String/">String</a></td>
 <td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../modified_by/">modified_by</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>agent that modified the element</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../in_subset/">in_subset</a></td>
@@ -972,112 +996,94 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../implicit_prefix/">implicit_prefix</a></td>
+<td><a href="../imported_from/">imported_from</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td>the imports entry that this element was derived from</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../string_serialization/">string_serialization</a></td>
+<td><a href="../in_language/">in_language</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Used on a slot that stores the string serialization of the containing object</td>
-<td><a href="../Definition/">Definition</a></td>
+<td></td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_pattern/">structured_pattern</a></td>
-<td>0..1 <br/> <a href="../PatternExpression/">PatternExpression</a></td>
-<td>the string value of the slot must conform to the regular expression in the pa...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
-</tr>
-<tr>
-<td><a href="../equals_string/">equals_string</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the slot must have range string and the value of the slot must equal the spec...</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
-</tr>
-<tr>
-<td><a href="../inlined_as_list/">inlined_as_list</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>True means that an inlined slot is represented as a list of range instances</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
-</tr>
-<tr>
-<td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if all of the expressions hold</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../aliases/">aliases</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Alaternate names for the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../required/">required</a></td>
-<td>0..1 <br/> <a href="../Boolean/">Boolean</a></td>
-<td>true means that the slot must be present in the loaded definition</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
-<td>An established standard to which the element conforms</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../close_mappings/">close_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../range_expression/">range_expression</a></td>
-<td>0..1 <br/> <a href="../AnonymousClassExpression/">AnonymousClassExpression</a></td>
-<td>A range that is described as a boolean expression combining existing ranges</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if none of the expressions hold</td>
-<td><a href="../SlotExpression/">SlotExpression</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../created_by/">created_by</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>agent that created the element</td>
-<td><a href="../Definition/">Definition</a></td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../rank/">rank</a></td>
@@ -1085,12 +1091,6 @@ <h2 id="slots">Slots</h2>
 <td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
-<tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
 </tbody>
 </table>
 <h2 id="usages">Usages</h2>
diff --git a/docs/SlotExpression/index.html b/docs/SlotExpression/index.html
index 41af4c72..810666e6 100644
--- a/docs/SlotExpression/index.html
+++ b/docs/SlotExpression/index.html
@@ -529,25 +529,25 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if none of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if only one of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if at least one of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if all of the expressions hold</td>
 <td>direct</td>
 </tr>
diff --git a/docs/StructuredAlias/index.html b/docs/StructuredAlias/index.html
index c76387fe..44eb0dbf 100644
--- a/docs/StructuredAlias/index.html
+++ b/docs/StructuredAlias/index.html
@@ -382,21 +382,21 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -406,81 +406,87 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../see_also/">see_also</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -490,27 +496,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="./">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -520,27 +520,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="./">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/SubsetDefinition/index.html b/docs/SubsetDefinition/index.html
index b9a51842..0f6c5d10 100644
--- a/docs/SubsetDefinition/index.html
+++ b/docs/SubsetDefinition/index.html
@@ -366,64 +366,64 @@ <h2 id="slots">Slots</h2>
 </thead>
 <tbody>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../name/">name</a></td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
+<td>the unique name of the element within the context of the schema</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../id_prefixes/">id_prefixes</a></td>
+<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
+<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
+<td><a href="../definition_uri/">definition_uri</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td>the "native" URI of the element</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../local_names/">local_names</a></td>
+<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td></td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../definition_uri/">definition_uri</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>the "native" URI of the element</td>
+<td><a href="../conforms_to/">conforms_to</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>An established standard to which the element conforms</td>
 <td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="./">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../deprecated/">deprecated</a></td>
@@ -432,39 +432,33 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../id_prefixes/">id_prefixes</a></td>
-<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
-<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="./">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -474,39 +468,39 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -516,16 +510,22 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../local_names/">local_names</a></td>
-<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
-<td></td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../close_mappings/">close_mappings</a></td>
@@ -534,27 +534,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
-<td>An established standard to which the element conforms</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
-<td>the unique name of the element within the context of the schema</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/TypeDefinition/index.html b/docs/TypeDefinition/index.html
index 262ee032..f5214c39 100644
--- a/docs/TypeDefinition/index.html
+++ b/docs/TypeDefinition/index.html
@@ -392,7 +392,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../base/">base</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>python base type that implements this type definition</td>
 <td>direct</td>
 </tr>
@@ -415,22 +415,34 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if only one of the expressions hold</td>
+<td><a href="../pattern/">pattern</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the string value of the slot must conform to this regular expression expresse...</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
+<td><a href="../structured_pattern/">structured_pattern</a></td>
+<td>0..1 <br/> <a href="../PatternExpression/">PatternExpression</a></td>
+<td>the string value of the slot must conform to the regular expression in the pa...</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
+</tr>
+<tr>
+<td><a href="../unit/">unit</a></td>
+<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
+<td>an encoding of a unit</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
+</tr>
+<tr>
+<td><a href="../implicit_prefix/">implicit_prefix</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../alt_descriptions/">alt_descriptions</a></td>
-<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
-<td>A sourced alternative description for an element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../equals_string/">equals_string</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the slot must have range string and the value of the slot must equal the spec...</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
 <td><a href="../equals_string_in/">equals_string_in</a></td>
@@ -439,129 +451,141 @@ <h2 id="slots">Slots</h2>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../equals_number/">equals_number</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the slot must have range of a number and the value of the slot must equal the...</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../minimum_value/">minimum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../definition_uri/">definition_uri</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>the "native" URI of the element</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../maximum_value/">maximum_value</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../none_of/">none_of</a></td>
+<td>0..* <br/> <a href="../AnonymousTypeExpression/">AnonymousTypeExpression</a></td>
+<td>holds if none of the expressions hold</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../pattern/">pattern</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the string value of the slot must conform to this regular expression expresse...</td>
+<td><a href="../exactly_one_of/">exactly_one_of</a></td>
+<td>0..* <br/> <a href="../AnonymousTypeExpression/">AnonymousTypeExpression</a></td>
+<td>holds if only one of the expressions hold</td>
 <td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../any_of/">any_of</a></td>
+<td>0..* <br/> <a href="../AnonymousTypeExpression/">AnonymousTypeExpression</a></td>
+<td>holds if at least one of the expressions hold</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../all_of/">all_of</a></td>
+<td>0..* <br/> <a href="../AnonymousTypeExpression/">AnonymousTypeExpression</a></td>
+<td>holds if all of the expressions hold</td>
+<td><a href="../TypeExpression/">TypeExpression</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../name/">name</a></td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
+<td>the unique name of the element within the context of the schema</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
+<td><a href="../id_prefixes/">id_prefixes</a></td>
+<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
+<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../definition_uri/">definition_uri</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>the "native" URI of the element</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../implicit_prefix/">implicit_prefix</a></td>
+<td><a href="../local_names/">local_names</a></td>
+<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
+<td></td>
+<td><a href="../Element/">Element</a></td>
+</tr>
+<tr>
+<td><a href="../conforms_to/">conforms_to</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Causes the slot value to be interpreted as a uriorcurie after prefixing with ...</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td>An established standard to which the element conforms</td>
+<td><a href="../Element/">Element</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
+</tr>
+<tr>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if at least one of the expressions hold</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../alt_descriptions/">alt_descriptions</a></td>
+<td>0..* <br/> <a href="../AltDescription/">AltDescription</a></td>
+<td>A sourced alternative description for an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../id_prefixes/">id_prefixes</a></td>
-<td>0..* <br/> <a href="../Ncname/">Ncname</a></td>
-<td>the identifier of this class or slot must begin with the URIs referenced by t...</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_pattern/">structured_pattern</a></td>
-<td>0..1 <br/> <a href="../PatternExpression/">PatternExpression</a></td>
-<td>the string value of the slot must conform to the regular expression in the pa...</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../minimum_value/">minimum_value</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or higher th...</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../equals_string/">equals_string</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the slot must have range string and the value of the slot must equal the spec...</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -571,45 +595,39 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td><a href="../source/">source</a></td>
 <td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if all of the expressions hold</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td><a href="../see_also/">see_also</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -619,58 +637,46 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../local_names/">local_names</a></td>
-<td>0..* <br/> <a href="../LocalName/">LocalName</a></td>
-<td></td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
-<td><a href="../close_mappings/">close_mappings</a></td>
+<td><a href="../mappings/">mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../conforms_to/">conforms_to</a></td>
-<td>0..1 <br/> NONE</td>
-<td>An established standard to which the element conforms</td>
-<td><a href="../Element/">Element</a></td>
-</tr>
-<tr>
-<td><a href="../equals_number/">equals_number</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the slot must have range of a number and the value of the slot must equal the...</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
-<td>holds if none of the expressions hold</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../close_mappings/">close_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have close...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../name/">name</a></td>
-<td>1..1 <br/> NONE</td>
-<td>the unique name of the element within the context of the schema</td>
-<td><a href="../Element/">Element</a></td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../unit/">unit</a></td>
-<td>0..1 <br/> <a href="../UnitOfMeasure/">UnitOfMeasure</a></td>
-<td>an encoding of a unit</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../maximum_value/">maximum_value</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>for slots with ranges of type number, the value must be equal to or lowe than...</td>
-<td><a href="../TypeExpression/">TypeExpression</a></td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
 <td><a href="../rank/">rank</a></td>
@@ -678,12 +684,6 @@ <h2 id="slots">Slots</h2>
 <td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
-<tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
-</tr>
 </tbody>
 </table>
 <h2 id="usages">Usages</h2>
diff --git a/docs/TypeExpression/index.html b/docs/TypeExpression/index.html
index c778134f..6d578e06 100644
--- a/docs/TypeExpression/index.html
+++ b/docs/TypeExpression/index.html
@@ -419,25 +419,25 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../none_of/">none_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if none of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../exactly_one_of/">exactly_one_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if only one of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../any_of/">any_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if at least one of the expressions hold</td>
 <td>direct</td>
 </tr>
 <tr>
 <td><a href="../all_of/">all_of</a></td>
-<td>0..1 <br/> <a href="../Expression/">Expression</a></td>
+<td>0..* <br/> <a href="../Expression/">Expression</a></td>
 <td>holds if all of the expressions hold</td>
 <td>direct</td>
 </tr>
diff --git a/docs/UniqueKey/index.html b/docs/UniqueKey/index.html
index 94194ee9..b350f115 100644
--- a/docs/UniqueKey/index.html
+++ b/docs/UniqueKey/index.html
@@ -363,7 +363,7 @@ <h2 id="slots">Slots</h2>
 <tbody>
 <tr>
 <td><a href="../unique_key_name/">unique_key_name</a></td>
-<td>1..1 <br/> NONE</td>
+<td>1..1 <br/> <a href="../String/">String</a></td>
 <td>name of the unique key</td>
 <td>direct</td>
 </tr>
@@ -374,21 +374,21 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../broad_mappings/">broad_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have broad...</td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../extensions/">extensions</a></td>
+<td>0..* <br/> <a href="../Extension/">Extension</a></td>
+<td>a tag/text tuple attached to an arbitrary element</td>
+<td><a href="../Extensible/">Extensible</a></td>
 </tr>
 <tr>
-<td><a href="../in_language/">in_language</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td></td>
-<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+<td><a href="../annotations/">annotations</a></td>
+<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
+<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
+<td><a href="../Annotatable/">Annotatable</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
+<td><a href="../description/">description</a></td>
+<td>0..1 <em>recommended</em> <br/> <a href="../String/">String</a></td>
+<td>a description of the element's purpose and use</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -398,81 +398,87 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../mappings/">mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have compa...</td>
+<td><a href="../title/">title</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the official title of the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../from_schema/">from_schema</a></td>
-<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
-<td>id of the schema that defined the element</td>
+<td><a href="../deprecated/">deprecated</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>Description of why and when this element will no longer be used</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../description/">description</a></td>
-<td>0..1 <em>recommended</em> <br/> NONE</td>
-<td>a description of the element's purpose and use</td>
+<td><a href="../todos/">todos</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>Outstanding issue that needs resolution</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../extensions/">extensions</a></td>
-<td>0..* <br/> <a href="../Extension/">Extension</a></td>
-<td>a tag/text tuple attached to an arbitrary element</td>
-<td><a href="../Extensible/">Extensible</a></td>
+<td><a href="../notes/">notes</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../comments/">comments</a></td>
+<td>0..* <br/> <a href="../String/">String</a></td>
+<td>notes and comments about an element intended for external consumption</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../source/">source</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A related resource from which the element is derived</td>
+<td><a href="../examples/">examples</a></td>
+<td>0..* <br/> <a href="../Example/">Example</a></td>
+<td>example usages of an element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../title/">title</a></td>
-<td>0..1 <br/> NONE</td>
-<td>the official title of the element</td>
+<td><a href="../in_subset/">in_subset</a></td>
+<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
+<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../narrow_mappings/">narrow_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have narro...</td>
+<td><a href="../from_schema/">from_schema</a></td>
+<td>0..1 <br/> <a href="../Uri/">Uri</a></td>
+<td>id of the schema that defined the element</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../see_also/">see_also</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>a reference</td>
+<td><a href="../imported_from/">imported_from</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>the imports entry that this element was derived from</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../notes/">notes</a></td>
-<td>0..* <br/> NONE</td>
-<td>editorial notes about an element intended for internal consumption</td>
+<td><a href="../source/">source</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A related resource from which the element is derived</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../comments/">comments</a></td>
-<td>0..* <br/> NONE</td>
-<td>notes and comments about an element intended for external consumption</td>
+<td><a href="../in_language/">in_language</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td></td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../todos/">todos</a></td>
-<td>0..* <br/> <a href="../String/">String</a></td>
-<td>Outstanding issue that needs resolution</td>
+<td><a href="../see_also/">see_also</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>a reference</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../in_subset/">in_subset</a></td>
-<td>0..* <br/> <a href="../SubsetDefinition/">SubsetDefinition</a></td>
-<td>used to indicate membership of a term in a defined subset of terms used for a...</td>
+<td><a href="../deprecated_element_has_exact_replacement/">deprecated_element_has_exact_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be automatically replaced by this uri o...</td>
+<td><a href="../CommonMetadata/">CommonMetadata</a></td>
+</tr>
+<tr>
+<td><a href="../deprecated_element_has_possible_replacement/">deprecated_element_has_possible_replacement</a></td>
+<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>When an element is deprecated, it can be potentially replaced by this uri or ...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -482,27 +488,21 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../related_mappings/">related_mappings</a></td>
-<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have relat...</td>
+<td><a href="../structured_aliases/">structured_aliases</a></td>
+<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
+<td>A list of structured_alias objects</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../examples/">examples</a></td>
-<td>0..* <br/> <a href="../Example/">Example</a></td>
-<td>example usages of an element</td>
+<td><a href="../mappings/">mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have compa...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../annotations/">annotations</a></td>
-<td>0..* <br/> <a href="../Annotation/">Annotation</a></td>
-<td>a collection of tag/text tuples with the semantics of OWL Annotation</td>
-<td><a href="../Annotatable/">Annotatable</a></td>
-</tr>
-<tr>
-<td><a href="../deprecated/">deprecated</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>Description of why and when this element will no longer be used</td>
+<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have ident...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
@@ -512,27 +512,27 @@ <h2 id="slots">Slots</h2>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../structured_aliases/">structured_aliases</a></td>
-<td>0..* <br/> <a href="../StructuredAlias/">StructuredAlias</a></td>
-<td>A list of structured_alias objects</td>
+<td><a href="../related_mappings/">related_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have relat...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../exact_mappings/">exact_mappings</a></td>
+<td><a href="../narrow_mappings/">narrow_mappings</a></td>
 <td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
-<td>A list of terms from different schemas or terminology systems that have ident...</td>
+<td>A list of terms from different schemas or terminology systems that have narro...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../rank/">rank</a></td>
-<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
-<td>the relative order in which the element occurs, lower values are given preced...</td>
+<td><a href="../broad_mappings/">broad_mappings</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td>A list of terms from different schemas or terminology systems that have broad...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 <tr>
-<td><a href="../imported_from/">imported_from</a></td>
-<td>0..1 <br/> <a href="../String/">String</a></td>
-<td>the imports entry that this element was derived from</td>
+<td><a href="../rank/">rank</a></td>
+<td>0..1 <br/> <a href="../Integer/">Integer</a></td>
+<td>the relative order in which the element occurs, lower values are given preced...</td>
 <td><a href="../CommonMetadata/">CommonMetadata</a></td>
 </tr>
 </tbody>
diff --git a/docs/UnitOfMeasure/index.html b/docs/UnitOfMeasure/index.html
index 3fb5dc17..57010c58 100644
--- a/docs/UnitOfMeasure/index.html
+++ b/docs/UnitOfMeasure/index.html
@@ -328,7 +328,7 @@ <h2 id="slots">Slots</h2>
 <tbody>
 <tr>
 <td><a href="../symbol/">symbol</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td>name of the unit encoded as a symbol</td>
 <td>direct</td>
 </tr>
@@ -358,7 +358,7 @@ <h2 id="slots">Slots</h2>
 </tr>
 <tr>
 <td><a href="../iec61360code/">iec61360code</a></td>
-<td>0..1 <br/> NONE</td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
 <td></td>
 <td>direct</td>
 </tr>
diff --git a/docs/assets/javascripts/bundle.6c7ad80a.min.js b/docs/assets/javascripts/bundle.6c7ad80a.min.js
deleted file mode 100644
index 1455c205..00000000
--- a/docs/assets/javascripts/bundle.6c7ad80a.min.js
+++ /dev/null
@@ -1,29 +0,0 @@
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Map,i=document.createNodeIterator(e,NodeFilter.SHOW_TEXT);for(let s=i.nextNode();s;s=i.nextNode())if((a=s.parentElement)!=null&&a.offsetHeight){let c=s.textContent,f=n(c);f.length>c.length&&o.set(s,f)}for(let[s,c]of o){let{childNodes:f}=L("span",null,c);s.replaceWith(...Array.from(f))}return{ref:e,nodes:o}}))}function Ls(e,{viewport$:t,main$:r}){let n=e.parentElement,o=n.offsetTop-n.parentElement.offsetTop;return Y([r,t]).pipe(m(([{offset:i,height:a},{offset:{y:s}}])=>(a=a+Math.min(o,Math.max(0,s-i))-o,{height:a,locked:s>=i+o})),K((i,a)=>i.height===a.height&&i.locked===a.locked))}function tn(e,n){var o=n,{header$:t}=o,r=cn(o,["header$"]);let i=Q(".md-sidebar__scrollwrap",e),{y:a}=ze(i);return j(()=>{let s=new _;return s.pipe($e(0,Te),ge(t)).subscribe({next([{height:c},{height:f}]){i.style.height=`${c-2*a}px`,e.style.top=`${f}px`},complete(){i.style.height="",e.style.top=""}}),Ls(e,r).pipe(O(c=>s.next(c)),C(()=>s.complete()),m(c=>U({ref:e},c)))})}function Ri(e,t){if(typeof t!="undefined"){let r=`https://api.github.com/repos/${e}/${t}`;return Ot(ke(`${r}/releases/latest`).pipe(ce(()=>k),m(n=>({version:n.tag_name})),je({})),ke(r).pipe(ce(()=>k),m(n=>({stars:n.stargazers_count,forks:n.forks_count})),je({}))).pipe(m(([n,o])=>U(U({},n),o)))}else{let r=`https://api.github.com/users/${e}`;return ke(r).pipe(m(n=>({repositories:n.public_repos})),je({}))}}function ki(e,t){let r=`https://${e}/api/v4/projects/${encodeURIComponent(t)}`;return ke(r).pipe(ce(()=>k),m(({star_count:n,forks_count:o})=>({stars:n,forks:o})),je({}))}function Hi(e){let[t]=e.match(/(git(?:hub|lab))/i)||[];switch(t.toLowerCase()){case"github":let[,r,n]=e.match(/^.+github\.com\/([^/]+)\/?([^/]+)?/i);return Ri(r,n);case"gitlab":let[,o,i]=e.match(/^.+?([^/]*gitlab[^/]+)\/(.+?)\/?$/i);return ki(o,i);default:return k}}var As;function Cs(e){return As||(As=j(()=>{let t=__md_get("__source",sessionStorage);return 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break}return[u,p]},[[],[...c]]),K((u,p)=>u[0]===p[0]&&u[1]===p[1])))))).pipe(m(([s,c])=>({prev:s.map(([f])=>f),next:c.map(([f])=>f)})),q({prev:[],next:[]}),Me(2,1),m(([s,c])=>s.prev.length<c.prev.length?{prev:c.prev.slice(Math.max(0,s.prev.length-1),c.prev.length),next:[]}:{prev:c.prev.slice(-1),next:c.next.slice(0,c.next.length-s.next.length)}))}function $i(e,{viewport$:t,header$:r,target$:n}){return j(()=>{let o=new _,i=o.pipe(fe(1));return o.subscribe(({prev:a,next:s})=>{for(let[c]of s)c.classList.remove("md-nav__link--passed"),c.classList.remove("md-nav__link--active");for(let[c,[f]]of a.entries())f.classList.add("md-nav__link--passed"),f.classList.toggle("md-nav__link--active",c===a.length-1)}),oe("navigation.tracking")&&t.pipe(Z(i),J("offset"),Xe(250),Le(1),Z(n.pipe(Le(1))),_t({delay:250}),ge(o)).subscribe(([,{prev:a}])=>{let s=Se(),c=a[a.length-1];if(c&&c.length){let[f]=c,{hash:u}=new URL(f.href);s.hash!==u&&(s.hash=u,history.replaceState({},"",`${s}`))}else 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[data-md-state=indeterminate]")),O(r=>{r.indeterminate=!0,r.checked=!1}),se(r=>g(r,"change").pipe(Dr(()=>r.classList.contains("md-toggle--indeterminate")),m(()=>r))),ge(t)).subscribe(([r,n])=>{r.classList.remove("md-toggle--indeterminate"),n&&(r.checked=!1)})}function Ps(){return/(iPad|iPhone|iPod)/.test(navigator.userAgent)}function Ui({document$:e}){e.pipe(x(()=>B("[data-md-scrollfix]")),O(t=>t.removeAttribute("data-md-scrollfix")),M(Ps),se(t=>g(t,"touchstart").pipe(m(()=>t)))).subscribe(t=>{let r=t.scrollTop;r===0?t.scrollTop=1:r+t.offsetHeight===t.scrollHeight&&(t.scrollTop=r-1)})}function Di({viewport$:e,tablet$:t}){Y([dt("search"),t]).pipe(m(([r,n])=>r&&!n),x(r=>P(r).pipe(Fe(r?400:100))),ge(e)).subscribe(([r,{offset:{y:n}}])=>{if(r)document.body.setAttribute("data-md-scrolllock",""),document.body.style.top=`-${n}px`;else{let o=-1*parseInt(document.body.style.top,10);document.body.removeAttribute("data-md-scrolllock"),document.body.style.top="",o&&window.scrollTo(0,o)}})}Object.entries||(Object.entries=function(e){let t=[];for(let r of Object.keys(e))t.push([r,e[r]]);return t});Object.values||(Object.values=function(e){let t=[];for(let r of Object.keys(e))t.push(e[r]);return t});typeof Element!="undefined"&&(Element.prototype.scrollTo||(Element.prototype.scrollTo=function(e,t){typeof e=="object"?(this.scrollLeft=e.left,this.scrollTop=e.top):(this.scrollLeft=e,this.scrollTop=t)}),Element.prototype.replaceWith||(Element.prototype.replaceWith=function(...e){let t=this.parentNode;if(t){e.length===0&&t.removeChild(this);for(let r=e.length-1;r>=0;r--){let n=e[r];typeof n!="object"?n=document.createTextNode(n):n.parentNode&&n.parentNode.removeChild(n),r?t.insertBefore(this.previousSibling,n):t.replaceChild(n,this)}}}));document.documentElement.classList.remove("no-js");document.documentElement.classList.add("js");var et=bo(),br=Co(),At=Io(),rn=Ao(),Ee=No(),vr=qr("(min-width: 960px)"),Vi=qr("(min-width: 1220px)"),Ni=$o(),zi=he(),qi=document.forms.namedItem("search")?(__search==null?void 0:__search.index)||ke(new URL("search/search_index.json",zi.base)):xe,nn=new _;vi({alert$:nn});oe("navigation.instant")&&gi({document$:et,location$:br,viewport$:Ee});var Wi;((Wi=zi.version)==null?void 0:Wi.provider)==="mike"&&Oi({document$:et});A(br,At).pipe(Fe(125)).subscribe(()=>{qe("drawer",!1),qe("search",!1)});rn.pipe(M(({mode:e})=>e==="global")).subscribe(e=>{switch(e.type){case"p":case",":let t=pe("[href][rel=prev]");typeof t!="undefined"&&t.click();break;case"n":case".":let r=pe("[href][rel=next]");typeof r!="undefined"&&r.click();break}});Fi({document$:et,tablet$:vr});Ui({document$:et});Di({viewport$:Ee,tablet$:vr});var Qe=li(we("header"),{viewport$:Ee}),hr=et.pipe(m(()=>we("main")),x(e=>hi(e,{viewport$:Ee,header$:Qe})),X(1)),Is=A(...ae("dialog").map(e=>pi(e,{alert$:nn})),...ae("header").map(e=>mi(e,{viewport$:Ee,header$:Qe,main$:hr})),...ae("palette").map(e=>bi(e)),...ae("search").map(e=>Ai(e,{index$:qi,keyboard$:rn})),...ae("source").map(e=>Pi(e))),$s=j(()=>A(...ae("content").map(e=>ui(e,{target$:At,print$:Ni})),...ae("content").map(e=>oe("search.highlight")?Ci(e,{index$:qi,location$:br}):k),...ae("header-title").map(e=>di(e,{viewport$:Ee,header$:Qe})),...ae("sidebar").map(e=>e.getAttribute("data-md-type")==="navigation"?Qr(Vi,()=>tn(e,{viewport$:Ee,header$:Qe,main$:hr})):Qr(vr,()=>tn(e,{viewport$:Ee,header$:Qe,main$:hr}))),...ae("tabs").map(e=>Ii(e,{viewport$:Ee,header$:Qe})),...ae("toc").map(e=>$i(e,{viewport$:Ee,header$:Qe,target$:At})),...ae("top").map(e=>ji(e,{viewport$:Ee,header$:Qe,main$:hr,target$:At})))),Qi=et.pipe(x(()=>$s),Ze(Is),X(1));Qi.subscribe();window.document$=et;window.location$=br;window.target$=At;window.keyboard$=rn;window.viewport$=Ee;window.tablet$=vr;window.screen$=Vi;window.print$=Ni;window.alert$=nn;window.component$=Qi;})();
-//# sourceMappingURL=bundle.6c7ad80a.min.js.map
-
diff --git a/docs/assets/javascripts/bundle.6c7ad80a.min.js.map b/docs/assets/javascripts/bundle.6c7ad80a.min.js.map
deleted file mode 100644
index 1a973ec0..00000000
--- a/docs/assets/javascripts/bundle.6c7ad80a.min.js.map
+++ /dev/null
@@ -1,8 +0,0 @@
-{
-  "version": 3,
-  "sources": ["node_modules/focus-visible/dist/focus-visible.js", "node_modules/url-polyfill/url-polyfill.js", "node_modules/rxjs/node_modules/tslib/tslib.js", "node_modules/clipboard/dist/clipboard.js", "node_modules/escape-html/index.js", "node_modules/array-flat-polyfill/index.mjs", "src/assets/javascripts/bundle.ts", "node_modules/unfetch/polyfill/index.js", "node_modules/rxjs/node_modules/tslib/modules/index.js", "node_modules/rxjs/src/internal/util/isFunction.ts", "node_modules/rxjs/src/internal/util/createErrorClass.ts", "node_modules/rxjs/src/internal/util/UnsubscriptionError.ts", "node_modules/rxjs/src/internal/util/arrRemove.ts", "node_modules/rxjs/src/internal/Subscription.ts", "node_modules/rxjs/src/internal/config.ts", "node_modules/rxjs/src/internal/scheduler/timeoutProvider.ts", "node_modules/rxjs/src/internal/util/reportUnhandledError.ts", "node_modules/rxjs/src/internal/util/noop.ts", "node_modules/rxjs/src/internal/NotificationFactories.ts", "node_modules/rxjs/src/internal/util/errorContext.ts", "node_modules/rxjs/src/internal/Subscriber.ts", "node_modules/rxjs/src/internal/symbol/observable.ts", "node_modules/rxjs/src/internal/util/identity.ts", "node_modules/rxjs/src/internal/util/pipe.ts", "node_modules/rxjs/src/internal/Observable.ts", "node_modules/rxjs/src/internal/util/lift.ts", "node_modules/rxjs/src/internal/operators/OperatorSubscriber.ts", "node_modules/rxjs/src/internal/scheduler/animationFrameProvider.ts", "node_modules/rxjs/src/internal/util/ObjectUnsubscribedError.ts", "node_modules/rxjs/src/internal/Subject.ts", "node_modules/rxjs/src/internal/scheduler/dateTimestampProvider.ts", "node_modules/rxjs/src/internal/ReplaySubject.ts", "node_modules/rxjs/src/internal/scheduler/Action.ts", "node_modules/rxjs/src/internal/scheduler/intervalProvider.ts", "node_modules/rxjs/src/internal/scheduler/AsyncAction.ts", "node_modules/rxjs/src/internal/Scheduler.ts", "node_modules/rxjs/src/internal/scheduler/AsyncScheduler.ts", "node_modules/rxjs/src/internal/scheduler/async.ts", "node_modules/rxjs/src/internal/scheduler/AnimationFrameAction.ts", "node_modules/rxjs/src/internal/scheduler/AnimationFrameScheduler.ts", "node_modules/rxjs/src/internal/scheduler/animationFrame.ts", "node_modules/rxjs/src/internal/observable/empty.ts", "node_modules/rxjs/src/internal/util/isScheduler.ts", "node_modules/rxjs/src/internal/util/args.ts", "node_modules/rxjs/src/internal/util/isArrayLike.ts", "node_modules/rxjs/src/internal/util/isPromise.ts", "node_modules/rxjs/src/internal/util/isInteropObservable.ts", "node_modules/rxjs/src/internal/util/isAsyncIterable.ts", "node_modules/rxjs/src/internal/util/throwUnobservableError.ts", "node_modules/rxjs/src/internal/symbol/iterator.ts", "node_modules/rxjs/src/internal/util/isIterable.ts", "node_modules/rxjs/src/internal/util/isReadableStreamLike.ts", "node_modules/rxjs/src/internal/observable/innerFrom.ts", "node_modules/rxjs/src/internal/util/executeSchedule.ts", "node_modules/rxjs/src/internal/operators/observeOn.ts", "node_modules/rxjs/src/internal/operators/subscribeOn.ts", "node_modules/rxjs/src/internal/scheduled/scheduleObservable.ts", "node_modules/rxjs/src/internal/scheduled/schedulePromise.ts", "node_modules/rxjs/src/internal/scheduled/scheduleArray.ts", "node_modules/rxjs/src/internal/scheduled/scheduleIterable.ts", "node_modules/rxjs/src/internal/scheduled/scheduleAsyncIterable.ts", "node_modules/rxjs/src/internal/scheduled/scheduleReadableStreamLike.ts", "node_modules/rxjs/src/internal/scheduled/scheduled.ts", "node_modules/rxjs/src/internal/observable/from.ts", "node_modules/rxjs/src/internal/observable/of.ts", "node_modules/rxjs/src/internal/observable/throwError.ts", "node_modules/rxjs/src/internal/util/isDate.ts", "node_modules/rxjs/src/internal/operators/map.ts", "node_modules/rxjs/src/internal/util/mapOneOrManyArgs.ts", "node_modules/rxjs/src/internal/util/argsArgArrayOrObject.ts", "node_modules/rxjs/src/internal/util/createObject.ts", "node_modules/rxjs/src/internal/observable/combineLatest.ts", "node_modules/rxjs/src/internal/operators/mergeInternals.ts", "node_modules/rxjs/src/internal/operators/mergeMap.ts", "node_modules/rxjs/src/internal/operators/mergeAll.ts", "node_modules/rxjs/src/internal/operators/concatAll.ts", "node_modules/rxjs/src/internal/observable/concat.ts", "node_modules/rxjs/src/internal/observable/defer.ts", "node_modules/rxjs/src/internal/observable/fromEvent.ts", "node_modules/rxjs/src/internal/observable/fromEventPattern.ts", "node_modules/rxjs/src/internal/observable/timer.ts", "node_modules/rxjs/src/internal/observable/merge.ts", "node_modules/rxjs/src/internal/observable/never.ts", "node_modules/rxjs/src/internal/util/argsOrArgArray.ts", "node_modules/rxjs/src/internal/operators/filter.ts", "node_modules/rxjs/src/internal/observable/zip.ts", "node_modules/rxjs/src/internal/operators/audit.ts", "node_modules/rxjs/src/internal/operators/auditTime.ts", "node_modules/rxjs/src/internal/operators/bufferCount.ts", "node_modules/rxjs/src/internal/operators/catchError.ts", "node_modules/rxjs/src/internal/operators/scanInternals.ts", "node_modules/rxjs/src/internal/operators/combineLatest.ts", "node_modules/rxjs/src/internal/operators/combineLatestWith.ts", "node_modules/rxjs/src/internal/operators/concatMap.ts", "node_modules/rxjs/src/internal/operators/debounceTime.ts", "node_modules/rxjs/src/internal/operators/defaultIfEmpty.ts", "node_modules/rxjs/src/internal/operators/take.ts", "node_modules/rxjs/src/internal/operators/ignoreElements.ts", "node_modules/rxjs/src/internal/operators/mapTo.ts", "node_modules/rxjs/src/internal/operators/delayWhen.ts", "node_modules/rxjs/src/internal/operators/delay.ts", "node_modules/rxjs/src/internal/operators/distinctUntilChanged.ts", "node_modules/rxjs/src/internal/operators/distinctUntilKeyChanged.ts", "node_modules/rxjs/src/internal/operators/endWith.ts", "node_modules/rxjs/src/internal/operators/finalize.ts", "node_modules/rxjs/src/internal/operators/takeLast.ts", "node_modules/rxjs/src/internal/operators/merge.ts", "node_modules/rxjs/src/internal/operators/mergeWith.ts", "node_modules/rxjs/src/internal/operators/repeat.ts", "node_modules/rxjs/src/internal/operators/sample.ts", "node_modules/rxjs/src/internal/operators/scan.ts", "node_modules/rxjs/src/internal/operators/share.ts", "node_modules/rxjs/src/internal/operators/shareReplay.ts", "node_modules/rxjs/src/internal/operators/skip.ts", "node_modules/rxjs/src/internal/operators/skipUntil.ts", "node_modules/rxjs/src/internal/operators/startWith.ts", "node_modules/rxjs/src/internal/operators/switchMap.ts", "node_modules/rxjs/src/internal/operators/takeUntil.ts", "node_modules/rxjs/src/internal/operators/takeWhile.ts", "node_modules/rxjs/src/internal/operators/tap.ts", "node_modules/rxjs/src/internal/operators/throttle.ts", "node_modules/rxjs/src/internal/operators/throttleTime.ts", "node_modules/rxjs/src/internal/operators/withLatestFrom.ts", "node_modules/rxjs/src/internal/operators/zip.ts", "node_modules/rxjs/src/internal/operators/zipWith.ts", "src/assets/javascripts/browser/document/index.ts", "src/assets/javascripts/browser/element/_/index.ts", "src/assets/javascripts/browser/element/focus/index.ts", "src/assets/javascripts/browser/element/offset/_/index.ts", "src/assets/javascripts/browser/element/offset/content/index.ts", "node_modules/resize-observer-polyfill/dist/ResizeObserver.es.js", "src/assets/javascripts/browser/element/size/_/index.ts", "src/assets/javascripts/browser/element/size/content/index.ts", "src/assets/javascripts/browser/element/visibility/index.ts", "src/assets/javascripts/browser/toggle/index.ts", "src/assets/javascripts/browser/keyboard/index.ts", "src/assets/javascripts/browser/location/_/index.ts", "src/assets/javascripts/utilities/h/index.ts", "src/assets/javascripts/utilities/string/index.ts", "src/assets/javascripts/browser/location/hash/index.ts", "src/assets/javascripts/browser/media/index.ts", "src/assets/javascripts/browser/request/index.ts", "src/assets/javascripts/browser/script/index.ts", "src/assets/javascripts/browser/viewport/offset/index.ts", "src/assets/javascripts/browser/viewport/size/index.ts", "src/assets/javascripts/browser/viewport/_/index.ts", "src/assets/javascripts/browser/viewport/at/index.ts", "src/assets/javascripts/browser/worker/index.ts", "src/assets/javascripts/_/index.ts", "src/assets/javascripts/components/_/index.ts", "src/assets/javascripts/components/content/code/_/index.ts", "src/assets/javascripts/templates/annotation/index.tsx", "src/assets/javascripts/templates/clipboard/index.tsx", "src/assets/javascripts/templates/search/index.tsx", "src/assets/javascripts/templates/source/index.tsx", "src/assets/javascripts/templates/tabbed/index.tsx", "src/assets/javascripts/templates/table/index.tsx", "src/assets/javascripts/templates/version/index.tsx", "src/assets/javascripts/components/content/annotation/_/index.ts", "src/assets/javascripts/components/content/annotation/list/index.ts", "src/assets/javascripts/components/content/code/mermaid/index.ts", "src/assets/javascripts/components/content/details/index.ts", "src/assets/javascripts/components/content/table/index.ts", "src/assets/javascripts/components/content/tabs/index.ts", "src/assets/javascripts/components/content/_/index.ts", "src/assets/javascripts/components/dialog/index.ts", "src/assets/javascripts/components/header/_/index.ts", "src/assets/javascripts/components/header/title/index.ts", "src/assets/javascripts/components/main/index.ts", "src/assets/javascripts/components/palette/index.ts", "src/assets/javascripts/integrations/clipboard/index.ts", "src/assets/javascripts/integrations/sitemap/index.ts", "src/assets/javascripts/integrations/instant/index.ts", "src/assets/javascripts/integrations/search/document/index.ts", "src/assets/javascripts/integrations/search/highlighter/index.ts", "src/assets/javascripts/integrations/search/query/transform/index.ts", "src/assets/javascripts/integrations/search/worker/message/index.ts", "src/assets/javascripts/integrations/search/worker/_/index.ts", "src/assets/javascripts/integrations/version/index.ts", "src/assets/javascripts/components/search/query/index.ts", "src/assets/javascripts/components/search/result/index.ts", "src/assets/javascripts/components/search/share/index.ts", "src/assets/javascripts/components/search/suggest/index.ts", "src/assets/javascripts/components/search/_/index.ts", "src/assets/javascripts/components/search/highlight/index.ts", "src/assets/javascripts/components/sidebar/index.ts", "src/assets/javascripts/components/source/facts/github/index.ts", "src/assets/javascripts/components/source/facts/gitlab/index.ts", "src/assets/javascripts/components/source/facts/_/index.ts", "src/assets/javascripts/components/source/_/index.ts", "src/assets/javascripts/components/tabs/index.ts", "src/assets/javascripts/components/toc/index.ts", "src/assets/javascripts/components/top/index.ts", "src/assets/javascripts/patches/indeterminate/index.ts", "src/assets/javascripts/patches/scrollfix/index.ts", "src/assets/javascripts/patches/scrolllock/index.ts", "src/assets/javascripts/polyfills/index.ts"],
-  "sourceRoot": "../../../..",
-  "sourcesContent": ["(function (global, factory) {\n  typeof exports === 'object' && typeof module !== 'undefined' ? factory() :\n  typeof define === 'function' && define.amd ? define(factory) :\n  (factory());\n}(this, (function () { 'use strict';\n\n  /**\n   * Applies the :focus-visible polyfill at the given scope.\n   * A scope in this case is either the top-level Document or a Shadow Root.\n   *\n   * @param {(Document|ShadowRoot)} scope\n   * @see https://github.com/WICG/focus-visible\n   */\n  function applyFocusVisiblePolyfill(scope) {\n    var hadKeyboardEvent = true;\n    var hadFocusVisibleRecently = false;\n    var hadFocusVisibleRecentlyTimeout = null;\n\n    var inputTypesAllowlist = {\n      text: true,\n      search: true,\n      url: true,\n      tel: true,\n      email: true,\n      password: true,\n      number: true,\n      date: true,\n      month: true,\n      week: true,\n      time: true,\n      datetime: true,\n      'datetime-local': true\n    };\n\n    /**\n     * Helper function for legacy browsers and iframes which sometimes focus\n     * elements like document, body, and non-interactive SVG.\n     * @param {Element} el\n     */\n    function isValidFocusTarget(el) {\n      if (\n        el &&\n        el !== document &&\n        el.nodeName !== 'HTML' &&\n        el.nodeName !== 'BODY' &&\n        'classList' in el &&\n        'contains' in el.classList\n      ) {\n        return true;\n      }\n      return false;\n    }\n\n    /**\n     * Computes whether the given element should automatically trigger the\n     * `focus-visible` class being added, i.e. whether it should always match\n     * `:focus-visible` when focused.\n     * @param {Element} el\n     * @return {boolean}\n     */\n    function focusTriggersKeyboardModality(el) {\n      var type = el.type;\n      var tagName = el.tagName;\n\n      if (tagName === 'INPUT' && inputTypesAllowlist[type] && !el.readOnly) {\n        return true;\n      }\n\n      if (tagName === 'TEXTAREA' && !el.readOnly) {\n        return true;\n      }\n\n      if (el.isContentEditable) {\n        return true;\n      }\n\n      return false;\n    }\n\n    /**\n     * Add the `focus-visible` class to the given element if it was not added by\n     * the author.\n     * @param {Element} el\n     */\n    function addFocusVisibleClass(el) {\n      if (el.classList.contains('focus-visible')) {\n        return;\n      }\n      el.classList.add('focus-visible');\n      el.setAttribute('data-focus-visible-added', '');\n    }\n\n    /**\n     * Remove the `focus-visible` class from the given element if it was not\n     * originally added by the author.\n     * @param {Element} el\n     */\n    function removeFocusVisibleClass(el) {\n      if (!el.hasAttribute('data-focus-visible-added')) {\n        return;\n      }\n      el.classList.remove('focus-visible');\n      el.removeAttribute('data-focus-visible-added');\n    }\n\n    /**\n     * If the most recent user interaction was via the keyboard;\n     * and the key press did not include a meta, alt/option, or control key;\n     * then the modality is keyboard. Otherwise, the modality is not keyboard.\n     * Apply `focus-visible` to any current active element and keep track\n     * of our keyboard modality state with `hadKeyboardEvent`.\n     * @param {KeyboardEvent} e\n     */\n    function onKeyDown(e) {\n      if (e.metaKey || e.altKey || e.ctrlKey) {\n        return;\n      }\n\n      if (isValidFocusTarget(scope.activeElement)) {\n        addFocusVisibleClass(scope.activeElement);\n      }\n\n      hadKeyboardEvent = true;\n    }\n\n    /**\n     * If at any point a user clicks with a pointing device, ensure that we change\n     * the modality away from keyboard.\n     * This avoids the situation where a user presses a key on an already focused\n     * element, and then clicks on a different element, focusing it with a\n     * pointing device, while we still think we're in keyboard modality.\n     * @param {Event} e\n     */\n    function onPointerDown(e) {\n      hadKeyboardEvent = false;\n    }\n\n    /**\n     * On `focus`, add the `focus-visible` class to the target if:\n     * - the target received focus as a result of keyboard navigation, or\n     * - the event target is an element that will likely require interaction\n     *   via the keyboard (e.g. a text box)\n     * @param {Event} e\n     */\n    function onFocus(e) {\n      // Prevent IE from focusing the document or HTML element.\n      if (!isValidFocusTarget(e.target)) {\n        return;\n      }\n\n      if (hadKeyboardEvent || focusTriggersKeyboardModality(e.target)) {\n        addFocusVisibleClass(e.target);\n      }\n    }\n\n    /**\n     * On `blur`, remove the `focus-visible` class from the target.\n     * @param {Event} e\n     */\n    function onBlur(e) {\n      if (!isValidFocusTarget(e.target)) {\n        return;\n      }\n\n      if (\n        e.target.classList.contains('focus-visible') ||\n        e.target.hasAttribute('data-focus-visible-added')\n      ) {\n        // To detect a tab/window switch, we look for a blur event followed\n        // rapidly by a visibility change.\n        // If we don't see a visibility change within 100ms, it's probably a\n        // regular focus change.\n        hadFocusVisibleRecently = true;\n        window.clearTimeout(hadFocusVisibleRecentlyTimeout);\n        hadFocusVisibleRecentlyTimeout = window.setTimeout(function() {\n          hadFocusVisibleRecently = false;\n        }, 100);\n        removeFocusVisibleClass(e.target);\n      }\n    }\n\n    /**\n     * If the user changes tabs, keep track of whether or not the previously\n     * focused element had .focus-visible.\n     * @param {Event} e\n     */\n    function onVisibilityChange(e) {\n      if (document.visibilityState === 'hidden') {\n        // If the tab becomes active again, the browser will handle calling focus\n        // on the element (Safari actually calls it twice).\n        // If this tab change caused a blur on an element with focus-visible,\n        // re-apply the class when the user switches back to the tab.\n        if (hadFocusVisibleRecently) {\n          hadKeyboardEvent = true;\n        }\n        addInitialPointerMoveListeners();\n      }\n    }\n\n    /**\n     * Add a group of listeners to detect usage of any pointing devices.\n     * These listeners will be added when the polyfill first loads, and anytime\n     * the window is blurred, so that they are active when the window regains\n     * focus.\n     */\n    function addInitialPointerMoveListeners() {\n      document.addEventListener('mousemove', onInitialPointerMove);\n      document.addEventListener('mousedown', onInitialPointerMove);\n      document.addEventListener('mouseup', onInitialPointerMove);\n      document.addEventListener('pointermove', onInitialPointerMove);\n      document.addEventListener('pointerdown', onInitialPointerMove);\n      document.addEventListener('pointerup', onInitialPointerMove);\n      document.addEventListener('touchmove', onInitialPointerMove);\n      document.addEventListener('touchstart', onInitialPointerMove);\n      document.addEventListener('touchend', onInitialPointerMove);\n    }\n\n    function removeInitialPointerMoveListeners() {\n      document.removeEventListener('mousemove', onInitialPointerMove);\n      document.removeEventListener('mousedown', onInitialPointerMove);\n      document.removeEventListener('mouseup', onInitialPointerMove);\n      document.removeEventListener('pointermove', onInitialPointerMove);\n      document.removeEventListener('pointerdown', onInitialPointerMove);\n      document.removeEventListener('pointerup', onInitialPointerMove);\n      document.removeEventListener('touchmove', onInitialPointerMove);\n      document.removeEventListener('touchstart', onInitialPointerMove);\n      document.removeEventListener('touchend', onInitialPointerMove);\n    }\n\n    /**\n     * When the polfyill first loads, assume the user is in keyboard modality.\n     * If any event is received from a pointing device (e.g. mouse, pointer,\n     * touch), turn off keyboard modality.\n     * This accounts for situations where focus enters the page from the URL bar.\n     * @param {Event} e\n     */\n    function onInitialPointerMove(e) {\n      // Work around a Safari quirk that fires a mousemove on <html> whenever the\n      // window blurs, even if you're tabbing out of the page. \u00AF\\_(\u30C4)_/\u00AF\n      if (e.target.nodeName && e.target.nodeName.toLowerCase() === 'html') {\n        return;\n      }\n\n      hadKeyboardEvent = false;\n      removeInitialPointerMoveListeners();\n    }\n\n    // For some kinds of state, we are interested in changes at the global scope\n    // only. For example, global pointer input, global key presses and global\n    // visibility change should affect the state at every scope:\n    document.addEventListener('keydown', onKeyDown, true);\n    document.addEventListener('mousedown', onPointerDown, true);\n    document.addEventListener('pointerdown', onPointerDown, true);\n    document.addEventListener('touchstart', onPointerDown, true);\n    document.addEventListener('visibilitychange', onVisibilityChange, true);\n\n    addInitialPointerMoveListeners();\n\n    // For focus and blur, we specifically care about state changes in the local\n    // scope. This is because focus / blur events that originate from within a\n    // shadow root are not re-dispatched from the host element if it was already\n    // the active element in its own scope:\n    scope.addEventListener('focus', onFocus, true);\n    scope.addEventListener('blur', onBlur, true);\n\n    // We detect that a node is a ShadowRoot by ensuring that it is a\n    // DocumentFragment and also has a host property. This check covers native\n    // implementation and polyfill implementation transparently. If we only cared\n    // about the native implementation, we could just check if the scope was\n    // an instance of a ShadowRoot.\n    if (scope.nodeType === Node.DOCUMENT_FRAGMENT_NODE && scope.host) {\n      // Since a ShadowRoot is a special kind of DocumentFragment, it does not\n      // have a root element to add a class to. So, we add this attribute to the\n      // host element instead:\n      scope.host.setAttribute('data-js-focus-visible', '');\n    } else if (scope.nodeType === Node.DOCUMENT_NODE) {\n      document.documentElement.classList.add('js-focus-visible');\n      document.documentElement.setAttribute('data-js-focus-visible', '');\n    }\n  }\n\n  // It is important to wrap all references to global window and document in\n  // these checks to support server-side rendering use cases\n  // @see https://github.com/WICG/focus-visible/issues/199\n  if (typeof window !== 'undefined' && typeof document !== 'undefined') {\n    // Make the polyfill helper globally available. This can be used as a signal\n    // to interested libraries that wish to coordinate with the polyfill for e.g.,\n    // applying the polyfill to a shadow root:\n    window.applyFocusVisiblePolyfill = applyFocusVisiblePolyfill;\n\n    // Notify interested libraries of the polyfill's presence, in case the\n    // polyfill was loaded lazily:\n    var event;\n\n    try {\n      event = new CustomEvent('focus-visible-polyfill-ready');\n    } catch (error) {\n      // IE11 does not support using CustomEvent as a constructor directly:\n      event = document.createEvent('CustomEvent');\n      event.initCustomEvent('focus-visible-polyfill-ready', false, false, {});\n    }\n\n    window.dispatchEvent(event);\n  }\n\n  if (typeof document !== 'undefined') {\n    // Apply the polyfill to the global document, so that no JavaScript\n    // coordination is required to use the polyfill in the top-level document:\n    applyFocusVisiblePolyfill(document);\n  }\n\n})));\n", "(function(global) {\r\n  /**\r\n   * Polyfill URLSearchParams\r\n   *\r\n   * Inspired from : https://github.com/WebReflection/url-search-params/blob/master/src/url-search-params.js\r\n   */\r\n\r\n  var checkIfIteratorIsSupported = function() {\r\n    try {\r\n      return !!Symbol.iterator;\r\n    } catch (error) {\r\n      return false;\r\n    }\r\n  };\r\n\r\n\r\n  var iteratorSupported = checkIfIteratorIsSupported();\r\n\r\n  var createIterator = function(items) {\r\n    var iterator = {\r\n      next: function() {\r\n        var value = items.shift();\r\n        return { done: value === void 0, value: value };\r\n      }\r\n    };\r\n\r\n    if (iteratorSupported) {\r\n      iterator[Symbol.iterator] = function() {\r\n        return iterator;\r\n      };\r\n    }\r\n\r\n    return iterator;\r\n  };\r\n\r\n  /**\r\n   * Search param name and values should be encoded according to https://url.spec.whatwg.org/#urlencoded-serializing\r\n   * encodeURIComponent() produces the same result except encoding spaces as `%20` instead of `+`.\r\n   */\r\n  var serializeParam = function(value) {\r\n    return encodeURIComponent(value).replace(/%20/g, '+');\r\n  };\r\n\r\n  var deserializeParam = function(value) {\r\n    return decodeURIComponent(String(value).replace(/\\+/g, ' '));\r\n  };\r\n\r\n  var polyfillURLSearchParams = function() {\r\n\r\n    var URLSearchParams = function(searchString) {\r\n      Object.defineProperty(this, '_entries', { writable: true, value: {} });\r\n      var typeofSearchString = typeof searchString;\r\n\r\n      if (typeofSearchString === 'undefined') {\r\n        // do nothing\r\n      } else if (typeofSearchString === 'string') {\r\n        if (searchString !== '') {\r\n          this._fromString(searchString);\r\n        }\r\n      } else if (searchString instanceof URLSearchParams) {\r\n        var _this = this;\r\n        searchString.forEach(function(value, name) {\r\n          _this.append(name, value);\r\n        });\r\n      } else if ((searchString !== null) && (typeofSearchString === 'object')) {\r\n        if (Object.prototype.toString.call(searchString) === '[object Array]') {\r\n          for (var i = 0; i < searchString.length; i++) {\r\n            var entry = searchString[i];\r\n            if ((Object.prototype.toString.call(entry) === '[object Array]') || (entry.length !== 2)) {\r\n              this.append(entry[0], entry[1]);\r\n            } else {\r\n              throw new TypeError('Expected [string, any] as entry at index ' + i + ' of URLSearchParams\\'s input');\r\n            }\r\n          }\r\n        } else {\r\n          for (var key in searchString) {\r\n            if (searchString.hasOwnProperty(key)) {\r\n              this.append(key, searchString[key]);\r\n            }\r\n          }\r\n        }\r\n      } else {\r\n        throw new TypeError('Unsupported input\\'s type for URLSearchParams');\r\n      }\r\n    };\r\n\r\n    var proto = URLSearchParams.prototype;\r\n\r\n    proto.append = function(name, value) {\r\n      if (name in this._entries) {\r\n        this._entries[name].push(String(value));\r\n      } else {\r\n        this._entries[name] = [String(value)];\r\n      }\r\n    };\r\n\r\n    proto.delete = function(name) {\r\n      delete this._entries[name];\r\n    };\r\n\r\n    proto.get = function(name) {\r\n      return (name in this._entries) ? this._entries[name][0] : null;\r\n    };\r\n\r\n    proto.getAll = function(name) {\r\n      return (name in this._entries) ? this._entries[name].slice(0) : [];\r\n    };\r\n\r\n    proto.has = function(name) {\r\n      return (name in this._entries);\r\n    };\r\n\r\n    proto.set = function(name, value) {\r\n      this._entries[name] = [String(value)];\r\n    };\r\n\r\n    proto.forEach = function(callback, thisArg) {\r\n      var entries;\r\n      for (var name in this._entries) {\r\n        if (this._entries.hasOwnProperty(name)) {\r\n          entries = this._entries[name];\r\n          for (var i = 0; i < entries.length; i++) {\r\n            callback.call(thisArg, entries[i], name, this);\r\n          }\r\n        }\r\n      }\r\n    };\r\n\r\n    proto.keys = function() {\r\n      var items = [];\r\n      this.forEach(function(value, name) {\r\n        items.push(name);\r\n      });\r\n      return createIterator(items);\r\n    };\r\n\r\n    proto.values = function() {\r\n      var items = [];\r\n      this.forEach(function(value) {\r\n        items.push(value);\r\n      });\r\n      return createIterator(items);\r\n    };\r\n\r\n    proto.entries = function() {\r\n      var items = [];\r\n      this.forEach(function(value, name) {\r\n        items.push([name, value]);\r\n      });\r\n      return createIterator(items);\r\n    };\r\n\r\n    if (iteratorSupported) {\r\n      proto[Symbol.iterator] = proto.entries;\r\n    }\r\n\r\n    proto.toString = function() {\r\n      var searchArray = [];\r\n      this.forEach(function(value, name) {\r\n        searchArray.push(serializeParam(name) + '=' + serializeParam(value));\r\n      });\r\n      return searchArray.join('&');\r\n    };\r\n\r\n\r\n    global.URLSearchParams = URLSearchParams;\r\n  };\r\n\r\n  var checkIfURLSearchParamsSupported = function() {\r\n    try {\r\n      var URLSearchParams = global.URLSearchParams;\r\n\r\n      return (\r\n        (new URLSearchParams('?a=1').toString() === 'a=1') &&\r\n        (typeof URLSearchParams.prototype.set === 'function') &&\r\n        (typeof URLSearchParams.prototype.entries === 'function')\r\n      );\r\n    } catch (e) {\r\n      return false;\r\n    }\r\n  };\r\n\r\n  if (!checkIfURLSearchParamsSupported()) {\r\n    polyfillURLSearchParams();\r\n  }\r\n\r\n  var proto = global.URLSearchParams.prototype;\r\n\r\n  if (typeof proto.sort !== 'function') {\r\n    proto.sort = function() {\r\n      var _this = this;\r\n      var items = [];\r\n      this.forEach(function(value, name) {\r\n        items.push([name, value]);\r\n        if (!_this._entries) {\r\n          _this.delete(name);\r\n        }\r\n      });\r\n      items.sort(function(a, b) {\r\n        if (a[0] < b[0]) {\r\n          return -1;\r\n        } else if (a[0] > b[0]) {\r\n          return +1;\r\n        } else {\r\n          return 0;\r\n        }\r\n      });\r\n      if (_this._entries) { // force reset because IE keeps keys index\r\n        _this._entries = {};\r\n      }\r\n      for (var i = 0; i < items.length; i++) {\r\n        this.append(items[i][0], items[i][1]);\r\n      }\r\n    };\r\n  }\r\n\r\n  if (typeof proto._fromString !== 'function') {\r\n    Object.defineProperty(proto, '_fromString', {\r\n      enumerable: false,\r\n      configurable: false,\r\n      writable: false,\r\n      value: function(searchString) {\r\n        if (this._entries) {\r\n          this._entries = {};\r\n        } else {\r\n          var keys = [];\r\n          this.forEach(function(value, name) {\r\n            keys.push(name);\r\n          });\r\n          for (var i = 0; i < keys.length; i++) {\r\n            this.delete(keys[i]);\r\n          }\r\n        }\r\n\r\n        searchString = searchString.replace(/^\\?/, '');\r\n        var attributes = searchString.split('&');\r\n        var attribute;\r\n        for (var i = 0; i < attributes.length; i++) {\r\n          attribute = attributes[i].split('=');\r\n          this.append(\r\n            deserializeParam(attribute[0]),\r\n            (attribute.length > 1) ? deserializeParam(attribute[1]) : ''\r\n          );\r\n        }\r\n      }\r\n    });\r\n  }\r\n\r\n  // HTMLAnchorElement\r\n\r\n})(\r\n  (typeof global !== 'undefined') ? global\r\n    : ((typeof window !== 'undefined') ? window\r\n    : ((typeof self !== 'undefined') ? self : this))\r\n);\r\n\r\n(function(global) {\r\n  /**\r\n   * Polyfill URL\r\n   *\r\n   * Inspired from : https://github.com/arv/DOM-URL-Polyfill/blob/master/src/url.js\r\n   */\r\n\r\n  var checkIfURLIsSupported = function() {\r\n    try {\r\n      var u = new global.URL('b', 'http://a');\r\n      u.pathname = 'c d';\r\n      return (u.href === 'http://a/c%20d') && u.searchParams;\r\n    } catch (e) {\r\n      return false;\r\n    }\r\n  };\r\n\r\n\r\n  var polyfillURL = function() {\r\n    var _URL = global.URL;\r\n\r\n    var URL = function(url, base) {\r\n      if (typeof url !== 'string') url = String(url);\r\n      if (base && typeof base !== 'string') base = String(base);\r\n\r\n      // Only create another document if the base is different from current location.\r\n      var doc = document, baseElement;\r\n      if (base && (global.location === void 0 || base !== global.location.href)) {\r\n        base = base.toLowerCase();\r\n        doc = document.implementation.createHTMLDocument('');\r\n        baseElement = doc.createElement('base');\r\n        baseElement.href = base;\r\n        doc.head.appendChild(baseElement);\r\n        try {\r\n          if (baseElement.href.indexOf(base) !== 0) throw new Error(baseElement.href);\r\n        } catch (err) {\r\n          throw new Error('URL unable to set base ' + base + ' due to ' + err);\r\n        }\r\n      }\r\n\r\n      var anchorElement = doc.createElement('a');\r\n      anchorElement.href = url;\r\n      if (baseElement) {\r\n        doc.body.appendChild(anchorElement);\r\n        anchorElement.href = anchorElement.href; // force href to refresh\r\n      }\r\n\r\n      var inputElement = doc.createElement('input');\r\n      inputElement.type = 'url';\r\n      inputElement.value = url;\r\n\r\n      if (anchorElement.protocol === ':' || !/:/.test(anchorElement.href) || (!inputElement.checkValidity() && !base)) {\r\n        throw new TypeError('Invalid URL');\r\n      }\r\n\r\n      Object.defineProperty(this, '_anchorElement', {\r\n        value: anchorElement\r\n      });\r\n\r\n\r\n      // create a linked searchParams which reflect its changes on URL\r\n      var searchParams = new global.URLSearchParams(this.search);\r\n      var enableSearchUpdate = true;\r\n      var enableSearchParamsUpdate = true;\r\n      var _this = this;\r\n      ['append', 'delete', 'set'].forEach(function(methodName) {\r\n        var method = searchParams[methodName];\r\n        searchParams[methodName] = function() {\r\n          method.apply(searchParams, arguments);\r\n          if (enableSearchUpdate) {\r\n            enableSearchParamsUpdate = false;\r\n            _this.search = searchParams.toString();\r\n            enableSearchParamsUpdate = true;\r\n          }\r\n        };\r\n      });\r\n\r\n      Object.defineProperty(this, 'searchParams', {\r\n        value: searchParams,\r\n        enumerable: true\r\n      });\r\n\r\n      var search = void 0;\r\n      Object.defineProperty(this, '_updateSearchParams', {\r\n        enumerable: false,\r\n        configurable: false,\r\n        writable: false,\r\n        value: function() {\r\n          if (this.search !== search) {\r\n            search = this.search;\r\n            if (enableSearchParamsUpdate) {\r\n              enableSearchUpdate = false;\r\n              this.searchParams._fromString(this.search);\r\n              enableSearchUpdate = true;\r\n            }\r\n          }\r\n        }\r\n      });\r\n    };\r\n\r\n    var proto = URL.prototype;\r\n\r\n    var linkURLWithAnchorAttribute = function(attributeName) {\r\n      Object.defineProperty(proto, attributeName, {\r\n        get: function() {\r\n          return this._anchorElement[attributeName];\r\n        },\r\n        set: function(value) {\r\n          this._anchorElement[attributeName] = value;\r\n        },\r\n        enumerable: true\r\n      });\r\n    };\r\n\r\n    ['hash', 'host', 'hostname', 'port', 'protocol']\r\n      .forEach(function(attributeName) {\r\n        linkURLWithAnchorAttribute(attributeName);\r\n      });\r\n\r\n    Object.defineProperty(proto, 'search', {\r\n      get: function() {\r\n        return this._anchorElement['search'];\r\n      },\r\n      set: function(value) {\r\n        this._anchorElement['search'] = value;\r\n        this._updateSearchParams();\r\n      },\r\n      enumerable: true\r\n    });\r\n\r\n    Object.defineProperties(proto, {\r\n\r\n      'toString': {\r\n        get: function() {\r\n          var _this = this;\r\n          return function() {\r\n            return _this.href;\r\n          };\r\n        }\r\n      },\r\n\r\n      'href': {\r\n        get: function() {\r\n          return this._anchorElement.href.replace(/\\?$/, '');\r\n        },\r\n        set: function(value) {\r\n          this._anchorElement.href = value;\r\n          this._updateSearchParams();\r\n        },\r\n        enumerable: true\r\n      },\r\n\r\n      'pathname': {\r\n        get: function() {\r\n          return this._anchorElement.pathname.replace(/(^\\/?)/, '/');\r\n        },\r\n        set: function(value) {\r\n          this._anchorElement.pathname = value;\r\n        },\r\n        enumerable: true\r\n      },\r\n\r\n      'origin': {\r\n        get: function() {\r\n          // get expected port from protocol\r\n          var expectedPort = { 'http:': 80, 'https:': 443, 'ftp:': 21 }[this._anchorElement.protocol];\r\n          // add port to origin if, expected port is different than actual port\r\n          // and it is not empty f.e http://foo:8080\r\n          // 8080 != 80 && 8080 != ''\r\n          var addPortToOrigin = this._anchorElement.port != expectedPort &&\r\n            this._anchorElement.port !== '';\r\n\r\n          return this._anchorElement.protocol +\r\n            '//' +\r\n            this._anchorElement.hostname +\r\n            (addPortToOrigin ? (':' + this._anchorElement.port) : '');\r\n        },\r\n        enumerable: true\r\n      },\r\n\r\n      'password': { // TODO\r\n        get: function() {\r\n          return '';\r\n        },\r\n        set: function(value) {\r\n        },\r\n        enumerable: true\r\n      },\r\n\r\n      'username': { // TODO\r\n        get: function() {\r\n          return '';\r\n        },\r\n        set: function(value) {\r\n        },\r\n        enumerable: true\r\n      },\r\n    });\r\n\r\n    URL.createObjectURL = function(blob) {\r\n      return _URL.createObjectURL.apply(_URL, arguments);\r\n    };\r\n\r\n    URL.revokeObjectURL = function(url) {\r\n      return _URL.revokeObjectURL.apply(_URL, arguments);\r\n    };\r\n\r\n    global.URL = URL;\r\n\r\n  };\r\n\r\n  if (!checkIfURLIsSupported()) {\r\n    polyfillURL();\r\n  }\r\n\r\n  if ((global.location !== void 0) && !('origin' in global.location)) {\r\n    var getOrigin = function() {\r\n      return global.location.protocol + '//' + global.location.hostname + (global.location.port ? 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'right' : 'left'] = '-9999px'; // Move element to the same position vertically\n\n  var yPosition = window.pageYOffset || document.documentElement.scrollTop;\n  fakeElement.style.top = \"\".concat(yPosition, \"px\");\n  fakeElement.setAttribute('readonly', '');\n  fakeElement.value = value;\n  return fakeElement;\n}\n;// CONCATENATED MODULE: ./src/actions/copy.js\n\n\n\n/**\n * Create fake copy action wrapper using a fake element.\n * @param {String} target\n * @param {Object} options\n * @return {String}\n */\n\nvar fakeCopyAction = function fakeCopyAction(value, options) {\n  var fakeElement = createFakeElement(value);\n  options.container.appendChild(fakeElement);\n  var selectedText = select_default()(fakeElement);\n  command('copy');\n  fakeElement.remove();\n  return selectedText;\n};\n/**\n * Copy action wrapper.\n * @param {String|HTMLElement} target\n * @param {Object} options\n * @return {String}\n */\n\n\nvar ClipboardActionCopy = function ClipboardActionCopy(target) {\n  var options = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {\n    container: document.body\n  };\n  var selectedText = '';\n\n  if (typeof target === 'string') {\n    selectedText = fakeCopyAction(target, options);\n  } else if (target instanceof HTMLInputElement && !['text', 'search', 'url', 'tel', 'password'].includes(target === null || target === void 0 ? void 0 : target.type)) {\n    // If input type doesn't support `setSelectionRange`. Simulate it. https://developer.mozilla.org/en-US/docs/Web/API/HTMLInputElement/setSelectionRange\n    selectedText = fakeCopyAction(target.value, options);\n  } else {\n    selectedText = select_default()(target);\n    command('copy');\n  }\n\n  return selectedText;\n};\n\n/* harmony default export */ var actions_copy = (ClipboardActionCopy);\n;// CONCATENATED MODULE: ./src/actions/default.js\nfunction _typeof(obj) { \"@babel/helpers - typeof\"; if (typeof Symbol === \"function\" && typeof Symbol.iterator === \"symbol\") { _typeof = function _typeof(obj) { return typeof obj; }; } else { _typeof = function _typeof(obj) { return obj && typeof Symbol === \"function\" && obj.constructor === Symbol && obj !== Symbol.prototype ? \"symbol\" : typeof obj; }; } return _typeof(obj); }\n\n\n\n/**\n * Inner function which performs selection from either `text` or `target`\n * properties and then executes copy or cut operations.\n * @param {Object} options\n */\n\nvar ClipboardActionDefault = function ClipboardActionDefault() {\n  var options = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};\n  // Defines base properties passed from constructor.\n  var _options$action = options.action,\n      action = _options$action === void 0 ? 'copy' : _options$action,\n      container = options.container,\n      target = options.target,\n      text = options.text; // Sets the `action` to be performed which can be either 'copy' or 'cut'.\n\n  if (action !== 'copy' && action !== 'cut') {\n    throw new Error('Invalid \"action\" value, use either \"copy\" or \"cut\"');\n  } // Sets the `target` property using an element that will be have its content copied.\n\n\n  if (target !== undefined) {\n    if (target && _typeof(target) === 'object' && target.nodeType === 1) {\n      if (action === 'copy' && target.hasAttribute('disabled')) {\n        throw new Error('Invalid \"target\" attribute. Please use \"readonly\" instead of \"disabled\" attribute');\n      }\n\n      if (action === 'cut' && (target.hasAttribute('readonly') || target.hasAttribute('disabled'))) {\n        throw new Error('Invalid \"target\" attribute. You can\\'t cut text from elements with \"readonly\" or \"disabled\" attributes');\n      }\n    } else {\n      throw new Error('Invalid \"target\" value, use a valid Element');\n    }\n  } // Define selection strategy based on `text` property.\n\n\n  if (text) {\n    return actions_copy(text, {\n      container: container\n    });\n  } // Defines which selection strategy based on `target` property.\n\n\n  if (target) {\n    return action === 'cut' ? actions_cut(target) : actions_copy(target, {\n      container: container\n    });\n  }\n};\n\n/* harmony default export */ var actions_default = (ClipboardActionDefault);\n;// CONCATENATED MODULE: ./src/clipboard.js\nfunction clipboard_typeof(obj) { \"@babel/helpers - typeof\"; if (typeof Symbol === \"function\" && typeof Symbol.iterator === \"symbol\") { clipboard_typeof = function _typeof(obj) { return typeof obj; }; } else { clipboard_typeof = function _typeof(obj) { return obj && typeof Symbol === \"function\" && obj.constructor === Symbol && obj !== Symbol.prototype ? \"symbol\" : typeof obj; }; } return clipboard_typeof(obj); }\n\nfunction _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError(\"Cannot call a class as a function\"); } }\n\nfunction _defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if (\"value\" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } }\n\nfunction _createClass(Constructor, protoProps, staticProps) { if (protoProps) _defineProperties(Constructor.prototype, protoProps); if (staticProps) _defineProperties(Constructor, staticProps); return Constructor; }\n\nfunction _inherits(subClass, superClass) { if (typeof superClass !== \"function\" && superClass !== null) { throw new TypeError(\"Super expression must either be null or a function\"); } subClass.prototype = Object.create(superClass && superClass.prototype, { constructor: { value: subClass, writable: true, configurable: true } }); if (superClass) _setPrototypeOf(subClass, superClass); }\n\nfunction _setPrototypeOf(o, p) { _setPrototypeOf = Object.setPrototypeOf || function _setPrototypeOf(o, p) { o.__proto__ = p; return o; }; return _setPrototypeOf(o, p); }\n\nfunction _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = _getPrototypeOf(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = _getPrototypeOf(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return _possibleConstructorReturn(this, result); }; }\n\nfunction _possibleConstructorReturn(self, call) { if (call && (clipboard_typeof(call) === \"object\" || typeof call === \"function\")) { return call; } return _assertThisInitialized(self); }\n\nfunction _assertThisInitialized(self) { if (self === void 0) { throw new ReferenceError(\"this hasn't been initialised - super() hasn't been called\"); } return self; }\n\nfunction _isNativeReflectConstruct() { if (typeof Reflect === \"undefined\" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === \"function\") return true; try { Date.prototype.toString.call(Reflect.construct(Date, [], function () {})); return true; } catch (e) { return false; } }\n\nfunction _getPrototypeOf(o) { _getPrototypeOf = Object.setPrototypeOf ? Object.getPrototypeOf : function _getPrototypeOf(o) { return o.__proto__ || Object.getPrototypeOf(o); }; return _getPrototypeOf(o); }\n\n\n\n\n\n\n/**\n * Helper function to retrieve attribute value.\n * @param {String} suffix\n * @param {Element} element\n */\n\nfunction getAttributeValue(suffix, element) {\n  var attribute = \"data-clipboard-\".concat(suffix);\n\n  if (!element.hasAttribute(attribute)) {\n    return;\n  }\n\n  return element.getAttribute(attribute);\n}\n/**\n * Base class which takes one or more elements, adds event listeners to them,\n * and instantiates a new `ClipboardAction` on each click.\n */\n\n\nvar Clipboard = /*#__PURE__*/function (_Emitter) {\n  _inherits(Clipboard, _Emitter);\n\n  var _super = _createSuper(Clipboard);\n\n  /**\n   * @param {String|HTMLElement|HTMLCollection|NodeList} trigger\n   * @param {Object} options\n   */\n  function Clipboard(trigger, options) {\n    var _this;\n\n    _classCallCheck(this, Clipboard);\n\n    _this = _super.call(this);\n\n    _this.resolveOptions(options);\n\n    _this.listenClick(trigger);\n\n    return _this;\n  }\n  /**\n   * Defines if attributes would be resolved using internal setter functions\n   * or custom functions that were passed in the constructor.\n   * @param {Object} options\n   */\n\n\n  _createClass(Clipboard, [{\n    key: \"resolveOptions\",\n    value: function resolveOptions() {\n      var options = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};\n      this.action = typeof options.action === 'function' ? options.action : this.defaultAction;\n      this.target = typeof options.target === 'function' ? options.target : this.defaultTarget;\n      this.text = typeof options.text === 'function' ? options.text : this.defaultText;\n      this.container = clipboard_typeof(options.container) === 'object' ? options.container : document.body;\n    }\n    /**\n     * Adds a click event listener to the passed trigger.\n     * @param {String|HTMLElement|HTMLCollection|NodeList} trigger\n     */\n\n  }, {\n    key: \"listenClick\",\n    value: function listenClick(trigger) {\n      var _this2 = this;\n\n      this.listener = listen_default()(trigger, 'click', function (e) {\n        return _this2.onClick(e);\n      });\n    }\n    /**\n     * Defines a new `ClipboardAction` on each click event.\n     * @param {Event} e\n     */\n\n  }, {\n    key: \"onClick\",\n    value: function onClick(e) {\n      var trigger = e.delegateTarget || e.currentTarget;\n      var action = this.action(trigger) || 'copy';\n      var text = actions_default({\n        action: action,\n        container: this.container,\n        target: this.target(trigger),\n        text: this.text(trigger)\n      }); // Fires an event based on the copy operation result.\n\n      this.emit(text ? 'success' : 'error', {\n        action: action,\n        text: text,\n        trigger: trigger,\n        clearSelection: function clearSelection() {\n          if (trigger) {\n            trigger.focus();\n          }\n\n          window.getSelection().removeAllRanges();\n        }\n      });\n    }\n    /**\n     * Default `action` lookup function.\n     * @param {Element} trigger\n     */\n\n  }, {\n    key: \"defaultAction\",\n    value: function defaultAction(trigger) {\n      return getAttributeValue('action', trigger);\n    }\n    /**\n     * Default `target` lookup function.\n     * @param {Element} trigger\n     */\n\n  }, {\n    key: \"defaultTarget\",\n    value: function defaultTarget(trigger) {\n      var selector = getAttributeValue('target', trigger);\n\n      if (selector) {\n        return document.querySelector(selector);\n      }\n    }\n    /**\n     * Allow fire programmatically a copy action\n     * @param {String|HTMLElement} target\n     * @param {Object} options\n     * @returns Text copied.\n     */\n\n  }, {\n    key: \"defaultText\",\n\n    /**\n     * Default `text` lookup function.\n     * @param {Element} trigger\n     */\n    value: function defaultText(trigger) {\n      return getAttributeValue('text', trigger);\n    }\n    /**\n     * Destroy lifecycle.\n     */\n\n  }, {\n    key: \"destroy\",\n    value: function destroy() {\n      this.listener.destroy();\n    }\n  }], [{\n    key: \"copy\",\n    value: function copy(target) {\n      var options = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {\n        container: document.body\n      };\n      return actions_copy(target, options);\n    }\n    /**\n     * Allow fire programmatically a cut action\n     * @param {String|HTMLElement} target\n     * @returns Text cutted.\n     */\n\n  }, {\n    key: \"cut\",\n    value: function cut(target) {\n      return actions_cut(target);\n    }\n    /**\n     * Returns the support of the given action, or all actions if no action is\n     * given.\n     * @param {String} [action]\n     */\n\n  }, {\n    key: \"isSupported\",\n    value: function isSupported() {\n      var action = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : ['copy', 'cut'];\n      var actions = typeof action === 'string' ? [action] : action;\n      var support = !!document.queryCommandSupported;\n      actions.forEach(function (action) {\n        support = support && !!document.queryCommandSupported(action);\n      });\n      return support;\n    }\n  }]);\n\n  return Clipboard;\n}((tiny_emitter_default()));\n\n/* harmony default export */ var clipboard = (Clipboard);\n\n/***/ }),\n\n/***/ 828:\n/***/ (function(module) {\n\nvar DOCUMENT_NODE_TYPE = 9;\n\n/**\n * A polyfill for Element.matches()\n */\nif (typeof Element !== 'undefined' && !Element.prototype.matches) {\n    var proto = Element.prototype;\n\n    proto.matches = proto.matchesSelector ||\n                    proto.mozMatchesSelector ||\n                    proto.msMatchesSelector ||\n                    proto.oMatchesSelector ||\n                    proto.webkitMatchesSelector;\n}\n\n/**\n * Finds the closest parent that matches a selector.\n *\n * @param {Element} element\n * @param {String} selector\n * @return {Function}\n */\nfunction closest (element, selector) {\n    while (element && element.nodeType !== DOCUMENT_NODE_TYPE) {\n        if (typeof element.matches === 'function' &&\n            element.matches(selector)) {\n          return element;\n        }\n        element = element.parentNode;\n    }\n}\n\nmodule.exports = closest;\n\n\n/***/ }),\n\n/***/ 438:\n/***/ (function(module, __unused_webpack_exports, __webpack_require__) {\n\nvar closest = __webpack_require__(828);\n\n/**\n * Delegates event to a selector.\n *\n * @param {Element} element\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @param {Boolean} useCapture\n * @return {Object}\n */\nfunction _delegate(element, selector, type, callback, useCapture) {\n    var listenerFn = listener.apply(this, arguments);\n\n    element.addEventListener(type, listenerFn, useCapture);\n\n    return {\n        destroy: function() {\n            element.removeEventListener(type, listenerFn, useCapture);\n        }\n    }\n}\n\n/**\n * Delegates event to a selector.\n *\n * @param {Element|String|Array} [elements]\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @param {Boolean} useCapture\n * @return {Object}\n */\nfunction delegate(elements, selector, type, callback, useCapture) {\n    // Handle the regular Element usage\n    if (typeof elements.addEventListener === 'function') {\n        return _delegate.apply(null, arguments);\n    }\n\n    // Handle Element-less usage, it defaults to global delegation\n    if (typeof type === 'function') {\n        // Use `document` as the first parameter, then apply arguments\n        // This is a short way to .unshift `arguments` without running into deoptimizations\n        return _delegate.bind(null, document).apply(null, arguments);\n    }\n\n    // Handle Selector-based usage\n    if (typeof elements === 'string') {\n        elements = document.querySelectorAll(elements);\n    }\n\n    // Handle Array-like based usage\n    return Array.prototype.map.call(elements, function (element) {\n        return _delegate(element, selector, type, callback, useCapture);\n    });\n}\n\n/**\n * Finds closest match and invokes callback.\n *\n * @param {Element} element\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @return {Function}\n */\nfunction listener(element, selector, type, callback) {\n    return function(e) {\n        e.delegateTarget = closest(e.target, selector);\n\n        if (e.delegateTarget) {\n            callback.call(element, e);\n        }\n    }\n}\n\nmodule.exports = delegate;\n\n\n/***/ }),\n\n/***/ 879:\n/***/ (function(__unused_webpack_module, exports) {\n\n/**\n * Check if argument is a HTML element.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.node = function(value) {\n    return value !== undefined\n        && value instanceof HTMLElement\n        && value.nodeType === 1;\n};\n\n/**\n * Check if argument is a list of HTML elements.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.nodeList = function(value) {\n    var type = Object.prototype.toString.call(value);\n\n    return value !== undefined\n        && (type === '[object NodeList]' || type === '[object HTMLCollection]')\n        && ('length' in value)\n        && (value.length === 0 || exports.node(value[0]));\n};\n\n/**\n * Check if argument is a string.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.string = function(value) {\n    return typeof value === 'string'\n        || value instanceof String;\n};\n\n/**\n * Check if argument is a function.\n *\n * @param {Object} value\n * @return {Boolean}\n */\nexports.fn = function(value) {\n    var type = Object.prototype.toString.call(value);\n\n    return type === '[object Function]';\n};\n\n\n/***/ }),\n\n/***/ 370:\n/***/ (function(module, __unused_webpack_exports, __webpack_require__) {\n\nvar is = __webpack_require__(879);\nvar delegate = __webpack_require__(438);\n\n/**\n * Validates all params and calls the right\n * listener function based on its target type.\n *\n * @param {String|HTMLElement|HTMLCollection|NodeList} target\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listen(target, type, callback) {\n    if (!target && !type && !callback) {\n        throw new Error('Missing required arguments');\n    }\n\n    if (!is.string(type)) {\n        throw new TypeError('Second argument must be a String');\n    }\n\n    if (!is.fn(callback)) {\n        throw new TypeError('Third argument must be a Function');\n    }\n\n    if (is.node(target)) {\n        return listenNode(target, type, callback);\n    }\n    else if (is.nodeList(target)) {\n        return listenNodeList(target, type, callback);\n    }\n    else if (is.string(target)) {\n        return listenSelector(target, type, callback);\n    }\n    else {\n        throw new TypeError('First argument must be a String, HTMLElement, HTMLCollection, or NodeList');\n    }\n}\n\n/**\n * Adds an event listener to a HTML element\n * and returns a remove listener function.\n *\n * @param {HTMLElement} node\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listenNode(node, type, callback) {\n    node.addEventListener(type, callback);\n\n    return {\n        destroy: function() {\n            node.removeEventListener(type, callback);\n        }\n    }\n}\n\n/**\n * Add an event listener to a list of HTML elements\n * and returns a remove listener function.\n *\n * @param {NodeList|HTMLCollection} nodeList\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listenNodeList(nodeList, type, callback) {\n    Array.prototype.forEach.call(nodeList, function(node) {\n        node.addEventListener(type, callback);\n    });\n\n    return {\n        destroy: function() {\n            Array.prototype.forEach.call(nodeList, function(node) {\n                node.removeEventListener(type, callback);\n            });\n        }\n    }\n}\n\n/**\n * Add an event listener to a selector\n * and returns a remove listener function.\n *\n * @param {String} selector\n * @param {String} type\n * @param {Function} callback\n * @return {Object}\n */\nfunction listenSelector(selector, type, callback) {\n    return delegate(document.body, selector, type, callback);\n}\n\nmodule.exports = listen;\n\n\n/***/ }),\n\n/***/ 817:\n/***/ (function(module) {\n\nfunction select(element) {\n    var selectedText;\n\n    if (element.nodeName === 'SELECT') {\n        element.focus();\n\n        selectedText = element.value;\n    }\n    else if (element.nodeName === 'INPUT' || element.nodeName === 'TEXTAREA') {\n        var isReadOnly = element.hasAttribute('readonly');\n\n        if (!isReadOnly) {\n            element.setAttribute('readonly', '');\n        }\n\n        element.select();\n        element.setSelectionRange(0, element.value.length);\n\n        if (!isReadOnly) {\n            element.removeAttribute('readonly');\n        }\n\n        selectedText = element.value;\n    }\n    else {\n        if (element.hasAttribute('contenteditable')) {\n            element.focus();\n        }\n\n        var selection = window.getSelection();\n        var range = document.createRange();\n\n        range.selectNodeContents(element);\n        selection.removeAllRanges();\n        selection.addRange(range);\n\n        selectedText = selection.toString();\n    }\n\n    return selectedText;\n}\n\nmodule.exports = select;\n\n\n/***/ }),\n\n/***/ 279:\n/***/ (function(module) {\n\nfunction E () {\n  // Keep this empty so it's easier to inherit from\n  // (via https://github.com/lipsmack from https://github.com/scottcorgan/tiny-emitter/issues/3)\n}\n\nE.prototype = {\n  on: function (name, callback, ctx) {\n    var e = this.e || (this.e = {});\n\n    (e[name] || (e[name] = [])).push({\n      fn: callback,\n      ctx: ctx\n    });\n\n    return this;\n  },\n\n  once: function (name, callback, ctx) {\n    var self = this;\n    function listener () {\n      self.off(name, listener);\n      callback.apply(ctx, arguments);\n    };\n\n    listener._ = callback\n    return this.on(name, listener, ctx);\n  },\n\n  emit: function (name) {\n    var data = [].slice.call(arguments, 1);\n    var evtArr = ((this.e || (this.e = {}))[name] || []).slice();\n    var i = 0;\n    var len = evtArr.length;\n\n    for (i; i < len; i++) {\n      evtArr[i].fn.apply(evtArr[i].ctx, data);\n    }\n\n    return this;\n  },\n\n  off: function (name, callback) {\n    var e = this.e || (this.e = {});\n    var evts = e[name];\n    var liveEvents = [];\n\n    if (evts && callback) {\n      for (var i = 0, len = evts.length; i < len; i++) {\n        if (evts[i].fn !== callback && evts[i].fn._ !== callback)\n          liveEvents.push(evts[i]);\n      }\n    }\n\n    // Remove event from queue to prevent memory leak\n    // Suggested by https://github.com/lazd\n    // Ref: https://github.com/scottcorgan/tiny-emitter/commit/c6ebfaa9bc973b33d110a84a307742b7cf94c953#commitcomment-5024910\n\n    (liveEvents.length)\n      ? e[name] = liveEvents\n      : delete e[name];\n\n    return this;\n  }\n};\n\nmodule.exports = E;\nmodule.exports.TinyEmitter = E;\n\n\n/***/ })\n\n/******/ \t});\n/************************************************************************/\n/******/ \t// The module cache\n/******/ \tvar __webpack_module_cache__ = {};\n/******/ \t\n/******/ \t// The require function\n/******/ \tfunction __webpack_require__(moduleId) {\n/******/ \t\t// Check if module is in cache\n/******/ \t\tif(__webpack_module_cache__[moduleId]) {\n/******/ \t\t\treturn __webpack_module_cache__[moduleId].exports;\n/******/ \t\t}\n/******/ \t\t// Create a new module (and put it into the cache)\n/******/ \t\tvar module = __webpack_module_cache__[moduleId] = {\n/******/ \t\t\t// no module.id needed\n/******/ \t\t\t// no module.loaded needed\n/******/ \t\t\texports: {}\n/******/ \t\t};\n/******/ \t\n/******/ \t\t// Execute the module function\n/******/ \t\t__webpack_modules__[moduleId](module, module.exports, __webpack_require__);\n/******/ \t\n/******/ \t\t// Return the exports of the module\n/******/ \t\treturn module.exports;\n/******/ \t}\n/******/ \t\n/************************************************************************/\n/******/ \t/* webpack/runtime/compat get default export */\n/******/ \t!function() {\n/******/ \t\t// getDefaultExport function for compatibility with non-harmony modules\n/******/ \t\t__webpack_require__.n = function(module) {\n/******/ \t\t\tvar getter = module && module.__esModule ?\n/******/ \t\t\t\tfunction() { return module['default']; } :\n/******/ \t\t\t\tfunction() { return module; };\n/******/ \t\t\t__webpack_require__.d(getter, { a: getter });\n/******/ \t\t\treturn getter;\n/******/ \t\t};\n/******/ \t}();\n/******/ \t\n/******/ \t/* webpack/runtime/define property getters */\n/******/ \t!function() {\n/******/ \t\t// define getter functions for harmony exports\n/******/ \t\t__webpack_require__.d = function(exports, definition) {\n/******/ \t\t\tfor(var key in definition) {\n/******/ \t\t\t\tif(__webpack_require__.o(definition, key) && !__webpack_require__.o(exports, key)) {\n/******/ \t\t\t\t\tObject.defineProperty(exports, key, { enumerable: true, get: definition[key] });\n/******/ \t\t\t\t}\n/******/ \t\t\t}\n/******/ \t\t};\n/******/ \t}();\n/******/ \t\n/******/ \t/* webpack/runtime/hasOwnProperty shorthand */\n/******/ \t!function() {\n/******/ \t\t__webpack_require__.o = function(obj, prop) { return Object.prototype.hasOwnProperty.call(obj, prop); }\n/******/ \t}();\n/******/ \t\n/************************************************************************/\n/******/ \t// module exports must be returned from runtime so entry inlining is disabled\n/******/ \t// startup\n/******/ \t// Load entry module and return exports\n/******/ \treturn __webpack_require__(686);\n/******/ })()\n.default;\n});", "/*!\n * escape-html\n * Copyright(c) 2012-2013 TJ Holowaychuk\n * Copyright(c) 2015 Andreas Lubbe\n * Copyright(c) 2015 Tiancheng \"Timothy\" Gu\n * MIT Licensed\n */\n\n'use strict';\n\n/**\n * Module variables.\n * @private\n */\n\nvar matchHtmlRegExp = /[\"'&<>]/;\n\n/**\n * Module exports.\n * @public\n */\n\nmodule.exports = escapeHtml;\n\n/**\n * Escape special characters in the given string of html.\n *\n * @param  {string} string The string to escape for inserting into HTML\n * @return {string}\n * @public\n */\n\nfunction escapeHtml(string) {\n  var str = '' + string;\n  var match = matchHtmlRegExp.exec(str);\n\n  if (!match) {\n    return str;\n  }\n\n  var escape;\n  var html = '';\n  var index = 0;\n  var lastIndex = 0;\n\n  for (index = match.index; index < str.length; index++) {\n    switch (str.charCodeAt(index)) {\n      case 34: // \"\n        escape = '&quot;';\n        break;\n      case 38: // &\n        escape = '&amp;';\n        break;\n      case 39: // '\n        escape = '&#39;';\n        break;\n      case 60: // <\n        escape = '&lt;';\n        break;\n      case 62: // >\n        escape = '&gt;';\n        break;\n      default:\n        continue;\n    }\n\n    if (lastIndex !== index) {\n      html += str.substring(lastIndex, index);\n    }\n\n    lastIndex = index + 1;\n    html += escape;\n  }\n\n  return lastIndex !== index\n    ? html + str.substring(lastIndex, index)\n    : html;\n}\n", "Array.prototype.flat||Object.defineProperty(Array.prototype,\"flat\",{configurable:!0,value:function r(){var t=isNaN(arguments[0])?1:Number(arguments[0]);return t?Array.prototype.reduce.call(this,function(a,e){return Array.isArray(e)?a.push.apply(a,r.call(e,t-1)):a.push(e),a},[]):Array.prototype.slice.call(this)},writable:!0}),Array.prototype.flatMap||Object.defineProperty(Array.prototype,\"flatMap\",{configurable:!0,value:function(r){return Array.prototype.map.apply(this,arguments).flat()},writable:!0})\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport \"array-flat-polyfill\"\nimport \"focus-visible\"\nimport \"unfetch/polyfill\"\nimport \"url-polyfill\"\n\nimport {\n  EMPTY,\n  NEVER,\n  Subject,\n  defer,\n  delay,\n  filter,\n  map,\n  merge,\n  mergeWith,\n  shareReplay,\n  switchMap\n} from \"rxjs\"\n\nimport { configuration, feature } from \"./_\"\nimport {\n  at,\n  getOptionalElement,\n  requestJSON,\n  setToggle,\n  watchDocument,\n  watchKeyboard,\n  watchLocation,\n  watchLocationTarget,\n  watchMedia,\n  watchPrint,\n  watchViewport\n} from \"./browser\"\nimport {\n  getComponentElement,\n  getComponentElements,\n  mountBackToTop,\n  mountContent,\n  mountDialog,\n  mountHeader,\n  mountHeaderTitle,\n  mountPalette,\n  mountSearch,\n  mountSearchHiglight,\n  mountSidebar,\n  mountSource,\n  mountTableOfContents,\n  mountTabs,\n  watchHeader,\n  watchMain\n} from \"./components\"\nimport {\n  SearchIndex,\n  setupClipboardJS,\n  setupInstantLoading,\n  setupVersionSelector\n} from \"./integrations\"\nimport {\n  patchIndeterminate,\n  patchScrollfix,\n  patchScrolllock\n} from \"./patches\"\nimport \"./polyfills\"\n\n/* ----------------------------------------------------------------------------\n * Application\n * ------------------------------------------------------------------------- */\n\n/* Yay, JavaScript is available */\ndocument.documentElement.classList.remove(\"no-js\")\ndocument.documentElement.classList.add(\"js\")\n\n/* Set up navigation observables and subjects */\nconst document$ = watchDocument()\nconst location$ = watchLocation()\nconst target$   = watchLocationTarget()\nconst keyboard$ = watchKeyboard()\n\n/* Set up media observables */\nconst viewport$ = watchViewport()\nconst tablet$   = watchMedia(\"(min-width: 960px)\")\nconst screen$   = watchMedia(\"(min-width: 1220px)\")\nconst print$    = watchPrint()\n\n/* Retrieve search index, if search is enabled */\nconst config = configuration()\nconst index$ = document.forms.namedItem(\"search\")\n  ? __search?.index || requestJSON<SearchIndex>(\n    new URL(\"search/search_index.json\", config.base)\n  )\n  : NEVER\n\n/* Set up Clipboard.js integration */\nconst alert$ = new Subject<string>()\nsetupClipboardJS({ alert$ })\n\n/* Set up instant loading, if enabled */\nif (feature(\"navigation.instant\"))\n  setupInstantLoading({ document$, location$, viewport$ })\n\n/* Set up version selector */\nif (config.version?.provider === \"mike\")\n  setupVersionSelector({ document$ })\n\n/* Always close drawer and search on navigation */\nmerge(location$, target$)\n  .pipe(\n    delay(125)\n  )\n    .subscribe(() => {\n      setToggle(\"drawer\", false)\n      setToggle(\"search\", false)\n    })\n\n/* Set up global keyboard handlers */\nkeyboard$\n  .pipe(\n    filter(({ mode }) => mode === \"global\")\n  )\n    .subscribe(key => {\n      switch (key.type) {\n\n        /* Go to previous page */\n        case \"p\":\n        case \",\":\n          const prev = getOptionalElement(\"[href][rel=prev]\")\n          if (typeof prev !== \"undefined\")\n            prev.click()\n          break\n\n        /* Go to next page */\n        case \"n\":\n        case \".\":\n          const next = getOptionalElement(\"[href][rel=next]\")\n          if (typeof next !== \"undefined\")\n            next.click()\n          break\n      }\n    })\n\n/* Set up patches */\npatchIndeterminate({ document$, tablet$ })\npatchScrollfix({ document$ })\npatchScrolllock({ viewport$, tablet$ })\n\n/* Set up header and main area observable */\nconst header$ = watchHeader(getComponentElement(\"header\"), { viewport$ })\nconst main$ = document$\n  .pipe(\n    map(() => getComponentElement(\"main\")),\n    switchMap(el => watchMain(el, { viewport$, header$ })),\n    shareReplay(1)\n  )\n\n/* Set up control component observables */\nconst control$ = merge(\n\n  /* Dialog */\n  ...getComponentElements(\"dialog\")\n    .map(el => mountDialog(el, { alert$ })),\n\n  /* Header */\n  ...getComponentElements(\"header\")\n    .map(el => mountHeader(el, { viewport$, header$, main$ })),\n\n  /* Color palette */\n  ...getComponentElements(\"palette\")\n    .map(el => mountPalette(el)),\n\n  /* Search */\n  ...getComponentElements(\"search\")\n    .map(el => mountSearch(el, { index$, keyboard$ })),\n\n  /* Repository information */\n  ...getComponentElements(\"source\")\n    .map(el => mountSource(el))\n)\n\n/* Set up content component observables */\nconst content$ = defer(() => merge(\n\n  /* Content */\n  ...getComponentElements(\"content\")\n    .map(el => mountContent(el, { target$, print$ })),\n\n  /* Search highlighting */\n  ...getComponentElements(\"content\")\n    .map(el => feature(\"search.highlight\")\n      ? mountSearchHiglight(el, { index$, location$ })\n      : EMPTY\n    ),\n\n  /* Header title */\n  ...getComponentElements(\"header-title\")\n    .map(el => mountHeaderTitle(el, { viewport$, header$ })),\n\n  /* Sidebar */\n  ...getComponentElements(\"sidebar\")\n    .map(el => el.getAttribute(\"data-md-type\") === \"navigation\"\n      ? at(screen$, () => mountSidebar(el, { viewport$, header$, main$ }))\n      : at(tablet$, () => mountSidebar(el, { viewport$, header$, main$ }))\n    ),\n\n  /* Navigation tabs */\n  ...getComponentElements(\"tabs\")\n    .map(el => mountTabs(el, { viewport$, header$ })),\n\n  /* Table of contents */\n  ...getComponentElements(\"toc\")\n    .map(el => mountTableOfContents(el, { viewport$, header$, target$ })),\n\n  /* Back-to-top button */\n  ...getComponentElements(\"top\")\n    .map(el => mountBackToTop(el, { viewport$, header$, main$, target$ }))\n))\n\n/* Set up component observables */\nconst component$ = document$\n  .pipe(\n    switchMap(() => content$),\n    mergeWith(control$),\n    shareReplay(1)\n  )\n\n/* Subscribe to all components */\ncomponent$.subscribe()\n\n/* ----------------------------------------------------------------------------\n * Exports\n * ------------------------------------------------------------------------- */\n\nwindow.document$  = document$          /* Document observable */\nwindow.location$  = location$          /* Location subject */\nwindow.target$    = target$            /* Location target observable */\nwindow.keyboard$  = keyboard$          /* Keyboard observable */\nwindow.viewport$  = viewport$          /* Viewport observable */\nwindow.tablet$    = tablet$            /* Media tablet observable */\nwindow.screen$    = screen$            /* Media screen observable */\nwindow.print$     = print$             /* Media print observable */\nwindow.alert$     = alert$             /* Alert subject */\nwindow.component$ = component$         /* Component observable */\n", "self.fetch||(self.fetch=function(e,n){return n=n||{},new Promise(function(t,s){var r=new XMLHttpRequest,o=[],u=[],i={},a=function(){return{ok:2==(r.status/100|0),statusText:r.statusText,status:r.status,url:r.responseURL,text:function(){return Promise.resolve(r.responseText)},json:function(){return Promise.resolve(r.responseText).then(JSON.parse)},blob:function(){return Promise.resolve(new Blob([r.response]))},clone:a,headers:{keys:function(){return o},entries:function(){return u},get:function(e){return i[e.toLowerCase()]},has:function(e){return e.toLowerCase()in i}}}};for(var c in r.open(n.method||\"get\",e,!0),r.onload=function(){r.getAllResponseHeaders().replace(/^(.*?):[^\\S\\n]*([\\s\\S]*?)$/gm,function(e,n,t){o.push(n=n.toLowerCase()),u.push([n,t]),i[n]=i[n]?i[n]+\",\"+t:t}),t(a())},r.onerror=s,r.withCredentials=\"include\"==n.credentials,n.headers)r.setRequestHeader(c,n.headers[c]);r.send(n.body||null)})});\n", "import tslib from '../tslib.js';\r\nconst {\r\n    __extends,\r\n    __assign,\r\n    __rest,\r\n    __decorate,\r\n    __param,\r\n    __metadata,\r\n    __awaiter,\r\n    __generator,\r\n    __exportStar,\r\n    __createBinding,\r\n    __values,\r\n    __read,\r\n    __spread,\r\n    __spreadArrays,\r\n    __spreadArray,\r\n    __await,\r\n    __asyncGenerator,\r\n    __asyncDelegator,\r\n    __asyncValues,\r\n    __makeTemplateObject,\r\n    __importStar,\r\n    __importDefault,\r\n    __classPrivateFieldGet,\r\n    __classPrivateFieldSet,\r\n} = tslib;\r\nexport {\r\n    __extends,\r\n    __assign,\r\n    __rest,\r\n    __decorate,\r\n    __param,\r\n    __metadata,\r\n    __awaiter,\r\n    __generator,\r\n    __exportStar,\r\n    __createBinding,\r\n    __values,\r\n    __read,\r\n    __spread,\r\n    __spreadArrays,\r\n    __spreadArray,\r\n    __await,\r\n    __asyncGenerator,\r\n    __asyncDelegator,\r\n    __asyncValues,\r\n    __makeTemplateObject,\r\n    __importStar,\r\n    __importDefault,\r\n    __classPrivateFieldGet,\r\n    __classPrivateFieldSet,\r\n};\r\n", null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  ReplaySubject,\n  Subject,\n  fromEvent\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch document\n *\n * Documents are implemented as subjects, so all downstream observables are\n * automatically updated when a new document is emitted.\n *\n * @returns Document subject\n */\nexport function watchDocument(): Subject<Document> {\n  const document$ = new ReplaySubject<Document>(1)\n  fromEvent(document, \"DOMContentLoaded\", { once: true })\n    .subscribe(() => document$.next(document))\n\n  /* Return document */\n  return document$\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve all elements matching the query selector\n *\n * @template T - Element type\n *\n * @param selector - Query selector\n * @param node - Node of reference\n *\n * @returns Elements\n */\nexport function getElements<T extends keyof HTMLElementTagNameMap>(\n  selector: T, node?: ParentNode\n): HTMLElementTagNameMap[T][]\n\nexport function getElements<T extends HTMLElement>(\n  selector: string, node?: ParentNode\n): T[]\n\nexport function getElements<T extends HTMLElement>(\n  selector: string, node: ParentNode = document\n): T[] {\n  return Array.from(node.querySelectorAll<T>(selector))\n}\n\n/**\n * Retrieve an element matching a query selector or throw a reference error\n *\n * Note that this function assumes that the element is present. If unsure if an\n * element is existent, use the `getOptionalElement` function instead.\n *\n * @template T - Element type\n *\n * @param selector - Query selector\n * @param node - Node of reference\n *\n * @returns Element\n */\nexport function getElement<T extends keyof HTMLElementTagNameMap>(\n  selector: T, node?: ParentNode\n): HTMLElementTagNameMap[T]\n\nexport function getElement<T extends HTMLElement>(\n  selector: string, node?: ParentNode\n): T\n\nexport function getElement<T extends HTMLElement>(\n  selector: string, node: ParentNode = document\n): T {\n  const el = getOptionalElement<T>(selector, node)\n  if (typeof el === \"undefined\")\n    throw new ReferenceError(\n      `Missing element: expected \"${selector}\" to be present`\n    )\n\n  /* Return element */\n  return el\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Retrieve an optional element matching the query selector\n *\n * @template T - Element type\n *\n * @param selector - Query selector\n * @param node - Node of reference\n *\n * @returns Element or nothing\n */\nexport function getOptionalElement<T extends keyof HTMLElementTagNameMap>(\n  selector: T, node?: ParentNode\n): HTMLElementTagNameMap[T] | undefined\n\nexport function getOptionalElement<T extends HTMLElement>(\n  selector: string, node?: ParentNode\n): T | undefined\n\nexport function getOptionalElement<T extends HTMLElement>(\n  selector: string, node: ParentNode = document\n): T | undefined {\n  return node.querySelector<T>(selector) || undefined\n}\n\n/**\n * Retrieve the currently active element\n *\n * @returns Element or nothing\n */\nexport function getActiveElement(): HTMLElement | undefined {\n  return document.activeElement instanceof HTMLElement\n    ? document.activeElement || undefined\n    : undefined\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  debounceTime,\n  distinctUntilChanged,\n  fromEvent,\n  map,\n  merge,\n  startWith\n} from \"rxjs\"\n\nimport { getActiveElement } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch element focus\n *\n * Previously, this function used `focus` and `blur` events to determine whether\n * an element is focused, but this doesn't work if there are focusable elements\n * within the elements itself. A better solutions are `focusin` and `focusout`\n * events, which bubble up the tree and allow for more fine-grained control.\n *\n * `debounceTime` is necessary, because when a focus change happens inside an\n * element, the observable would first emit `false` and then `true` again.\n *\n * @param el - Element\n *\n * @returns Element focus observable\n */\nexport function watchElementFocus(\n  el: HTMLElement\n): Observable<boolean> {\n  return merge(\n    fromEvent(document.body, \"focusin\"),\n    fromEvent(document.body, \"focusout\")\n  )\n    .pipe(\n      debounceTime(1),\n      map(() => {\n        const active = getActiveElement()\n        return typeof active !== \"undefined\"\n          ? el.contains(active)\n          : false\n      }),\n      startWith(el === getActiveElement()),\n      distinctUntilChanged()\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  animationFrameScheduler,\n  auditTime,\n  fromEvent,\n  map,\n  merge,\n  startWith\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Element offset\n */\nexport interface ElementOffset {\n  x: number                            /* Horizontal offset */\n  y: number                            /* Vertical offset */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve element offset\n *\n * @param el - Element\n *\n * @returns Element offset\n */\nexport function getElementOffset(\n  el: HTMLElement\n): ElementOffset {\n  return {\n    x: el.offsetLeft,\n    y: el.offsetTop\n  }\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch element offset\n *\n * @param el - Element\n *\n * @returns Element offset observable\n */\nexport function watchElementOffset(\n  el: HTMLElement\n): Observable<ElementOffset> {\n  return merge(\n    fromEvent(window, \"load\"),\n    fromEvent(window, \"resize\")\n  )\n    .pipe(\n      auditTime(0, animationFrameScheduler),\n      map(() => getElementOffset(el)),\n      startWith(getElementOffset(el))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  animationFrameScheduler,\n  auditTime,\n  fromEvent,\n  map,\n  merge,\n  startWith\n} from \"rxjs\"\n\nimport { ElementOffset } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve element content offset (= scroll offset)\n *\n * @param el - Element\n *\n * @returns Element content offset\n */\nexport function getElementContentOffset(\n  el: HTMLElement\n): ElementOffset {\n  return {\n    x: el.scrollLeft,\n    y: el.scrollTop\n  }\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch element content offset\n *\n * @param el - Element\n *\n * @returns Element content offset observable\n */\nexport function watchElementContentOffset(\n  el: HTMLElement\n): Observable<ElementOffset> {\n  return merge(\n    fromEvent(el, \"scroll\"),\n    fromEvent(window, \"resize\")\n  )\n    .pipe(\n      auditTime(0, animationFrameScheduler),\n      map(() => getElementContentOffset(el)),\n      startWith(getElementContentOffset(el))\n    )\n}\n", "/**\r\n * A collection of shims that provide minimal functionality of the ES6 collections.\r\n *\r\n * These implementations are not meant to be used outside of the ResizeObserver\r\n * modules as they cover only a limited range of use cases.\r\n */\r\n/* eslint-disable require-jsdoc, valid-jsdoc */\r\nvar MapShim = (function () {\r\n    if (typeof Map !== 'undefined') {\r\n        return Map;\r\n    }\r\n    /**\r\n     * Returns index in provided array that matches the specified key.\r\n     *\r\n     * @param {Array<Array>} arr\r\n     * @param {*} key\r\n     * @returns {number}\r\n     */\r\n    function getIndex(arr, key) {\r\n        var result = -1;\r\n        arr.some(function (entry, index) {\r\n            if (entry[0] === key) {\r\n                result = index;\r\n                return true;\r\n            }\r\n            return false;\r\n        });\r\n        return result;\r\n    }\r\n    return /** @class */ (function () {\r\n        function class_1() {\r\n            this.__entries__ = [];\r\n        }\r\n        Object.defineProperty(class_1.prototype, \"size\", {\r\n            /**\r\n             * @returns {boolean}\r\n             */\r\n            get: function () {\r\n                return this.__entries__.length;\r\n            },\r\n            enumerable: true,\r\n            configurable: true\r\n        });\r\n        /**\r\n         * @param {*} key\r\n         * @returns {*}\r\n         */\r\n        class_1.prototype.get = function (key) {\r\n            var index = getIndex(this.__entries__, key);\r\n            var entry = this.__entries__[index];\r\n            return entry && entry[1];\r\n        };\r\n        /**\r\n         * @param {*} key\r\n         * @param {*} value\r\n         * @returns {void}\r\n         */\r\n        class_1.prototype.set = function (key, value) {\r\n            var index = getIndex(this.__entries__, key);\r\n            if (~index) {\r\n                this.__entries__[index][1] = value;\r\n            }\r\n            else {\r\n                this.__entries__.push([key, value]);\r\n            }\r\n        };\r\n        /**\r\n         * @param {*} key\r\n         * @returns {void}\r\n         */\r\n        class_1.prototype.delete = function (key) {\r\n            var entries = this.__entries__;\r\n            var index = getIndex(entries, key);\r\n            if (~index) {\r\n                entries.splice(index, 1);\r\n            }\r\n        };\r\n        /**\r\n         * @param {*} key\r\n         * @returns {void}\r\n         */\r\n        class_1.prototype.has = function (key) {\r\n            return !!~getIndex(this.__entries__, key);\r\n        };\r\n        /**\r\n         * @returns {void}\r\n         */\r\n        class_1.prototype.clear = function () {\r\n            this.__entries__.splice(0);\r\n        };\r\n        /**\r\n         * @param {Function} callback\r\n         * @param {*} [ctx=null]\r\n         * @returns {void}\r\n         */\r\n        class_1.prototype.forEach = function (callback, ctx) {\r\n            if (ctx === void 0) { ctx = null; }\r\n            for (var _i = 0, _a = this.__entries__; _i < _a.length; _i++) {\r\n                var entry = _a[_i];\r\n                callback.call(ctx, entry[1], entry[0]);\r\n            }\r\n        };\r\n        return class_1;\r\n    }());\r\n})();\n\n/**\r\n * Detects whether window and document objects are available in current environment.\r\n */\r\nvar isBrowser = typeof window !== 'undefined' && typeof document !== 'undefined' && window.document === document;\n\n// Returns global object of a current environment.\r\nvar global$1 = (function () {\r\n    if (typeof global !== 'undefined' && global.Math === Math) {\r\n        return global;\r\n    }\r\n    if (typeof self !== 'undefined' && self.Math === Math) {\r\n        return self;\r\n    }\r\n    if (typeof window !== 'undefined' && window.Math === Math) {\r\n        return window;\r\n    }\r\n    // eslint-disable-next-line no-new-func\r\n    return Function('return this')();\r\n})();\n\n/**\r\n * A shim for the requestAnimationFrame which falls back to the setTimeout if\r\n * first one is not supported.\r\n *\r\n * @returns {number} Requests' identifier.\r\n */\r\nvar requestAnimationFrame$1 = (function () {\r\n    if (typeof requestAnimationFrame === 'function') {\r\n        // It's required to use a bounded function because IE sometimes throws\r\n        // an \"Invalid calling object\" error if rAF is invoked without the global\r\n        // object on the left hand side.\r\n        return requestAnimationFrame.bind(global$1);\r\n    }\r\n    return function (callback) { return setTimeout(function () { return callback(Date.now()); }, 1000 / 60); };\r\n})();\n\n// Defines minimum timeout before adding a trailing call.\r\nvar trailingTimeout = 2;\r\n/**\r\n * Creates a wrapper function which ensures that provided callback will be\r\n * invoked only once during the specified delay period.\r\n *\r\n * @param {Function} callback - Function to be invoked after the delay period.\r\n * @param {number} delay - Delay after which to invoke callback.\r\n * @returns {Function}\r\n */\r\nfunction throttle (callback, delay) {\r\n    var leadingCall = false, trailingCall = false, lastCallTime = 0;\r\n    /**\r\n     * Invokes the original callback function and schedules new invocation if\r\n     * the \"proxy\" was called during current request.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    function resolvePending() {\r\n        if (leadingCall) {\r\n            leadingCall = false;\r\n            callback();\r\n        }\r\n        if (trailingCall) {\r\n            proxy();\r\n        }\r\n    }\r\n    /**\r\n     * Callback invoked after the specified delay. It will further postpone\r\n     * invocation of the original function delegating it to the\r\n     * requestAnimationFrame.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    function timeoutCallback() {\r\n        requestAnimationFrame$1(resolvePending);\r\n    }\r\n    /**\r\n     * Schedules invocation of the original function.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    function proxy() {\r\n        var timeStamp = Date.now();\r\n        if (leadingCall) {\r\n            // Reject immediately following calls.\r\n            if (timeStamp - lastCallTime < trailingTimeout) {\r\n                return;\r\n            }\r\n            // Schedule new call to be in invoked when the pending one is resolved.\r\n            // This is important for \"transitions\" which never actually start\r\n            // immediately so there is a chance that we might miss one if change\r\n            // happens amids the pending invocation.\r\n            trailingCall = true;\r\n        }\r\n        else {\r\n            leadingCall = true;\r\n            trailingCall = false;\r\n            setTimeout(timeoutCallback, delay);\r\n        }\r\n        lastCallTime = timeStamp;\r\n    }\r\n    return proxy;\r\n}\n\n// Minimum delay before invoking the update of observers.\r\nvar REFRESH_DELAY = 20;\r\n// A list of substrings of CSS properties used to find transition events that\r\n// might affect dimensions of observed elements.\r\nvar transitionKeys = ['top', 'right', 'bottom', 'left', 'width', 'height', 'size', 'weight'];\r\n// Check if MutationObserver is available.\r\nvar mutationObserverSupported = typeof MutationObserver !== 'undefined';\r\n/**\r\n * Singleton controller class which handles updates of ResizeObserver instances.\r\n */\r\nvar ResizeObserverController = /** @class */ (function () {\r\n    /**\r\n     * Creates a new instance of ResizeObserverController.\r\n     *\r\n     * @private\r\n     */\r\n    function ResizeObserverController() {\r\n        /**\r\n         * Indicates whether DOM listeners have been added.\r\n         *\r\n         * @private {boolean}\r\n         */\r\n        this.connected_ = false;\r\n        /**\r\n         * Tells that controller has subscribed for Mutation Events.\r\n         *\r\n         * @private {boolean}\r\n         */\r\n        this.mutationEventsAdded_ = false;\r\n        /**\r\n         * Keeps reference to the instance of MutationObserver.\r\n         *\r\n         * @private {MutationObserver}\r\n         */\r\n        this.mutationsObserver_ = null;\r\n        /**\r\n         * A list of connected observers.\r\n         *\r\n         * @private {Array<ResizeObserverSPI>}\r\n         */\r\n        this.observers_ = [];\r\n        this.onTransitionEnd_ = this.onTransitionEnd_.bind(this);\r\n        this.refresh = throttle(this.refresh.bind(this), REFRESH_DELAY);\r\n    }\r\n    /**\r\n     * Adds observer to observers list.\r\n     *\r\n     * @param {ResizeObserverSPI} observer - Observer to be added.\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverController.prototype.addObserver = function (observer) {\r\n        if (!~this.observers_.indexOf(observer)) {\r\n            this.observers_.push(observer);\r\n        }\r\n        // Add listeners if they haven't been added yet.\r\n        if (!this.connected_) {\r\n            this.connect_();\r\n        }\r\n    };\r\n    /**\r\n     * Removes observer from observers list.\r\n     *\r\n     * @param {ResizeObserverSPI} observer - Observer to be removed.\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverController.prototype.removeObserver = function (observer) {\r\n        var observers = this.observers_;\r\n        var index = observers.indexOf(observer);\r\n        // Remove observer if it's present in registry.\r\n        if (~index) {\r\n            observers.splice(index, 1);\r\n        }\r\n        // Remove listeners if controller has no connected observers.\r\n        if (!observers.length && this.connected_) {\r\n            this.disconnect_();\r\n        }\r\n    };\r\n    /**\r\n     * Invokes the update of observers. It will continue running updates insofar\r\n     * it detects changes.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverController.prototype.refresh = function () {\r\n        var changesDetected = this.updateObservers_();\r\n        // Continue running updates if changes have been detected as there might\r\n        // be future ones caused by CSS transitions.\r\n        if (changesDetected) {\r\n            this.refresh();\r\n        }\r\n    };\r\n    /**\r\n     * Updates every observer from observers list and notifies them of queued\r\n     * entries.\r\n     *\r\n     * @private\r\n     * @returns {boolean} Returns \"true\" if any observer has detected changes in\r\n     *      dimensions of it's elements.\r\n     */\r\n    ResizeObserverController.prototype.updateObservers_ = function () {\r\n        // Collect observers that have active observations.\r\n        var activeObservers = this.observers_.filter(function (observer) {\r\n            return observer.gatherActive(), observer.hasActive();\r\n        });\r\n        // Deliver notifications in a separate cycle in order to avoid any\r\n        // collisions between observers, e.g. when multiple instances of\r\n        // ResizeObserver are tracking the same element and the callback of one\r\n        // of them changes content dimensions of the observed target. Sometimes\r\n        // this may result in notifications being blocked for the rest of observers.\r\n        activeObservers.forEach(function (observer) { return observer.broadcastActive(); });\r\n        return activeObservers.length > 0;\r\n    };\r\n    /**\r\n     * Initializes DOM listeners.\r\n     *\r\n     * @private\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverController.prototype.connect_ = function () {\r\n        // Do nothing if running in a non-browser environment or if listeners\r\n        // have been already added.\r\n        if (!isBrowser || this.connected_) {\r\n            return;\r\n        }\r\n        // Subscription to the \"Transitionend\" event is used as a workaround for\r\n        // delayed transitions. This way it's possible to capture at least the\r\n        // final state of an element.\r\n        document.addEventListener('transitionend', this.onTransitionEnd_);\r\n        window.addEventListener('resize', this.refresh);\r\n        if (mutationObserverSupported) {\r\n            this.mutationsObserver_ = new MutationObserver(this.refresh);\r\n            this.mutationsObserver_.observe(document, {\r\n                attributes: true,\r\n                childList: true,\r\n                characterData: true,\r\n                subtree: true\r\n            });\r\n        }\r\n        else {\r\n            document.addEventListener('DOMSubtreeModified', this.refresh);\r\n            this.mutationEventsAdded_ = true;\r\n        }\r\n        this.connected_ = true;\r\n    };\r\n    /**\r\n     * Removes DOM listeners.\r\n     *\r\n     * @private\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverController.prototype.disconnect_ = function () {\r\n        // Do nothing if running in a non-browser environment or if listeners\r\n        // have been already removed.\r\n        if (!isBrowser || !this.connected_) {\r\n            return;\r\n        }\r\n        document.removeEventListener('transitionend', this.onTransitionEnd_);\r\n        window.removeEventListener('resize', this.refresh);\r\n        if (this.mutationsObserver_) {\r\n            this.mutationsObserver_.disconnect();\r\n        }\r\n        if (this.mutationEventsAdded_) {\r\n            document.removeEventListener('DOMSubtreeModified', this.refresh);\r\n        }\r\n        this.mutationsObserver_ = null;\r\n        this.mutationEventsAdded_ = false;\r\n        this.connected_ = false;\r\n    };\r\n    /**\r\n     * \"Transitionend\" event handler.\r\n     *\r\n     * @private\r\n     * @param {TransitionEvent} event\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverController.prototype.onTransitionEnd_ = function (_a) {\r\n        var _b = _a.propertyName, propertyName = _b === void 0 ? '' : _b;\r\n        // Detect whether transition may affect dimensions of an element.\r\n        var isReflowProperty = transitionKeys.some(function (key) {\r\n            return !!~propertyName.indexOf(key);\r\n        });\r\n        if (isReflowProperty) {\r\n            this.refresh();\r\n        }\r\n    };\r\n    /**\r\n     * Returns instance of the ResizeObserverController.\r\n     *\r\n     * @returns {ResizeObserverController}\r\n     */\r\n    ResizeObserverController.getInstance = function () {\r\n        if (!this.instance_) {\r\n            this.instance_ = new ResizeObserverController();\r\n        }\r\n        return this.instance_;\r\n    };\r\n    /**\r\n     * Holds reference to the controller's instance.\r\n     *\r\n     * @private {ResizeObserverController}\r\n     */\r\n    ResizeObserverController.instance_ = null;\r\n    return ResizeObserverController;\r\n}());\n\n/**\r\n * Defines non-writable/enumerable properties of the provided target object.\r\n *\r\n * @param {Object} target - Object for which to define properties.\r\n * @param {Object} props - Properties to be defined.\r\n * @returns {Object} Target object.\r\n */\r\nvar defineConfigurable = (function (target, props) {\r\n    for (var _i = 0, _a = Object.keys(props); _i < _a.length; _i++) {\r\n        var key = _a[_i];\r\n        Object.defineProperty(target, key, {\r\n            value: props[key],\r\n            enumerable: false,\r\n            writable: false,\r\n            configurable: true\r\n        });\r\n    }\r\n    return target;\r\n});\n\n/**\r\n * Returns the global object associated with provided element.\r\n *\r\n * @param {Object} target\r\n * @returns {Object}\r\n */\r\nvar getWindowOf = (function (target) {\r\n    // Assume that the element is an instance of Node, which means that it\r\n    // has the \"ownerDocument\" property from which we can retrieve a\r\n    // corresponding global object.\r\n    var ownerGlobal = target && target.ownerDocument && target.ownerDocument.defaultView;\r\n    // Return the local global object if it's not possible extract one from\r\n    // provided element.\r\n    return ownerGlobal || global$1;\r\n});\n\n// Placeholder of an empty content rectangle.\r\nvar emptyRect = createRectInit(0, 0, 0, 0);\r\n/**\r\n * Converts provided string to a number.\r\n *\r\n * @param {number|string} value\r\n * @returns {number}\r\n */\r\nfunction toFloat(value) {\r\n    return parseFloat(value) || 0;\r\n}\r\n/**\r\n * Extracts borders size from provided styles.\r\n *\r\n * @param {CSSStyleDeclaration} styles\r\n * @param {...string} positions - Borders positions (top, right, ...)\r\n * @returns {number}\r\n */\r\nfunction getBordersSize(styles) {\r\n    var positions = [];\r\n    for (var _i = 1; _i < arguments.length; _i++) {\r\n        positions[_i - 1] = arguments[_i];\r\n    }\r\n    return positions.reduce(function (size, position) {\r\n        var value = styles['border-' + position + '-width'];\r\n        return size + toFloat(value);\r\n    }, 0);\r\n}\r\n/**\r\n * Extracts paddings sizes from provided styles.\r\n *\r\n * @param {CSSStyleDeclaration} styles\r\n * @returns {Object} Paddings box.\r\n */\r\nfunction getPaddings(styles) {\r\n    var positions = ['top', 'right', 'bottom', 'left'];\r\n    var paddings = {};\r\n    for (var _i = 0, positions_1 = positions; _i < positions_1.length; _i++) {\r\n        var position = positions_1[_i];\r\n        var value = styles['padding-' + position];\r\n        paddings[position] = toFloat(value);\r\n    }\r\n    return paddings;\r\n}\r\n/**\r\n * Calculates content rectangle of provided SVG element.\r\n *\r\n * @param {SVGGraphicsElement} target - Element content rectangle of which needs\r\n *      to be calculated.\r\n * @returns {DOMRectInit}\r\n */\r\nfunction getSVGContentRect(target) {\r\n    var bbox = target.getBBox();\r\n    return createRectInit(0, 0, bbox.width, bbox.height);\r\n}\r\n/**\r\n * Calculates content rectangle of provided HTMLElement.\r\n *\r\n * @param {HTMLElement} target - Element for which to calculate the content rectangle.\r\n * @returns {DOMRectInit}\r\n */\r\nfunction getHTMLElementContentRect(target) {\r\n    // Client width & height properties can't be\r\n    // used exclusively as they provide rounded values.\r\n    var clientWidth = target.clientWidth, clientHeight = target.clientHeight;\r\n    // By this condition we can catch all non-replaced inline, hidden and\r\n    // detached elements. Though elements with width & height properties less\r\n    // than 0.5 will be discarded as well.\r\n    //\r\n    // Without it we would need to implement separate methods for each of\r\n    // those cases and it's not possible to perform a precise and performance\r\n    // effective test for hidden elements. E.g. even jQuery's ':visible' filter\r\n    // gives wrong results for elements with width & height less than 0.5.\r\n    if (!clientWidth && !clientHeight) {\r\n        return emptyRect;\r\n    }\r\n    var styles = getWindowOf(target).getComputedStyle(target);\r\n    var paddings = getPaddings(styles);\r\n    var horizPad = paddings.left + paddings.right;\r\n    var vertPad = paddings.top + paddings.bottom;\r\n    // Computed styles of width & height are being used because they are the\r\n    // only dimensions available to JS that contain non-rounded values. It could\r\n    // be possible to utilize the getBoundingClientRect if only it's data wasn't\r\n    // affected by CSS transformations let alone paddings, borders and scroll bars.\r\n    var width = toFloat(styles.width), height = toFloat(styles.height);\r\n    // Width & height include paddings and borders when the 'border-box' box\r\n    // model is applied (except for IE).\r\n    if (styles.boxSizing === 'border-box') {\r\n        // Following conditions are required to handle Internet Explorer which\r\n        // doesn't include paddings and borders to computed CSS dimensions.\r\n        //\r\n        // We can say that if CSS dimensions + paddings are equal to the \"client\"\r\n        // properties then it's either IE, and thus we don't need to subtract\r\n        // anything, or an element merely doesn't have paddings/borders styles.\r\n        if (Math.round(width + horizPad) !== clientWidth) {\r\n            width -= getBordersSize(styles, 'left', 'right') + horizPad;\r\n        }\r\n        if (Math.round(height + vertPad) !== clientHeight) {\r\n            height -= getBordersSize(styles, 'top', 'bottom') + vertPad;\r\n        }\r\n    }\r\n    // Following steps can't be applied to the document's root element as its\r\n    // client[Width/Height] properties represent viewport area of the window.\r\n    // Besides, it's as well not necessary as the <html> itself neither has\r\n    // rendered scroll bars nor it can be clipped.\r\n    if (!isDocumentElement(target)) {\r\n        // In some browsers (only in Firefox, actually) CSS width & height\r\n        // include scroll bars size which can be removed at this step as scroll\r\n        // bars are the only difference between rounded dimensions + paddings\r\n        // and \"client\" properties, though that is not always true in Chrome.\r\n        var vertScrollbar = Math.round(width + horizPad) - clientWidth;\r\n        var horizScrollbar = Math.round(height + vertPad) - clientHeight;\r\n        // Chrome has a rather weird rounding of \"client\" properties.\r\n        // E.g. for an element with content width of 314.2px it sometimes gives\r\n        // the client width of 315px and for the width of 314.7px it may give\r\n        // 314px. And it doesn't happen all the time. So just ignore this delta\r\n        // as a non-relevant.\r\n        if (Math.abs(vertScrollbar) !== 1) {\r\n            width -= vertScrollbar;\r\n        }\r\n        if (Math.abs(horizScrollbar) !== 1) {\r\n            height -= horizScrollbar;\r\n        }\r\n    }\r\n    return createRectInit(paddings.left, paddings.top, width, height);\r\n}\r\n/**\r\n * Checks whether provided element is an instance of the SVGGraphicsElement.\r\n *\r\n * @param {Element} target - Element to be checked.\r\n * @returns {boolean}\r\n */\r\nvar isSVGGraphicsElement = (function () {\r\n    // Some browsers, namely IE and Edge, don't have the SVGGraphicsElement\r\n    // interface.\r\n    if (typeof SVGGraphicsElement !== 'undefined') {\r\n        return function (target) { return target instanceof getWindowOf(target).SVGGraphicsElement; };\r\n    }\r\n    // If it's so, then check that element is at least an instance of the\r\n    // SVGElement and that it has the \"getBBox\" method.\r\n    // eslint-disable-next-line no-extra-parens\r\n    return function (target) { return (target instanceof getWindowOf(target).SVGElement &&\r\n        typeof target.getBBox === 'function'); };\r\n})();\r\n/**\r\n * Checks whether provided element is a document element (<html>).\r\n *\r\n * @param {Element} target - Element to be checked.\r\n * @returns {boolean}\r\n */\r\nfunction isDocumentElement(target) {\r\n    return target === getWindowOf(target).document.documentElement;\r\n}\r\n/**\r\n * Calculates an appropriate content rectangle for provided html or svg element.\r\n *\r\n * @param {Element} target - Element content rectangle of which needs to be calculated.\r\n * @returns {DOMRectInit}\r\n */\r\nfunction getContentRect(target) {\r\n    if (!isBrowser) {\r\n        return emptyRect;\r\n    }\r\n    if (isSVGGraphicsElement(target)) {\r\n        return getSVGContentRect(target);\r\n    }\r\n    return getHTMLElementContentRect(target);\r\n}\r\n/**\r\n * Creates rectangle with an interface of the DOMRectReadOnly.\r\n * Spec: https://drafts.fxtf.org/geometry/#domrectreadonly\r\n *\r\n * @param {DOMRectInit} rectInit - Object with rectangle's x/y coordinates and dimensions.\r\n * @returns {DOMRectReadOnly}\r\n */\r\nfunction createReadOnlyRect(_a) {\r\n    var x = _a.x, y = _a.y, width = _a.width, height = _a.height;\r\n    // If DOMRectReadOnly is available use it as a prototype for the rectangle.\r\n    var Constr = typeof DOMRectReadOnly !== 'undefined' ? DOMRectReadOnly : Object;\r\n    var rect = Object.create(Constr.prototype);\r\n    // Rectangle's properties are not writable and non-enumerable.\r\n    defineConfigurable(rect, {\r\n        x: x, y: y, width: width, height: height,\r\n        top: y,\r\n        right: x + width,\r\n        bottom: height + y,\r\n        left: x\r\n    });\r\n    return rect;\r\n}\r\n/**\r\n * Creates DOMRectInit object based on the provided dimensions and the x/y coordinates.\r\n * Spec: https://drafts.fxtf.org/geometry/#dictdef-domrectinit\r\n *\r\n * @param {number} x - X coordinate.\r\n * @param {number} y - Y coordinate.\r\n * @param {number} width - Rectangle's width.\r\n * @param {number} height - Rectangle's height.\r\n * @returns {DOMRectInit}\r\n */\r\nfunction createRectInit(x, y, width, height) {\r\n    return { x: x, y: y, width: width, height: height };\r\n}\n\n/**\r\n * Class that is responsible for computations of the content rectangle of\r\n * provided DOM element and for keeping track of it's changes.\r\n */\r\nvar ResizeObservation = /** @class */ (function () {\r\n    /**\r\n     * Creates an instance of ResizeObservation.\r\n     *\r\n     * @param {Element} target - Element to be observed.\r\n     */\r\n    function ResizeObservation(target) {\r\n        /**\r\n         * Broadcasted width of content rectangle.\r\n         *\r\n         * @type {number}\r\n         */\r\n        this.broadcastWidth = 0;\r\n        /**\r\n         * Broadcasted height of content rectangle.\r\n         *\r\n         * @type {number}\r\n         */\r\n        this.broadcastHeight = 0;\r\n        /**\r\n         * Reference to the last observed content rectangle.\r\n         *\r\n         * @private {DOMRectInit}\r\n         */\r\n        this.contentRect_ = createRectInit(0, 0, 0, 0);\r\n        this.target = target;\r\n    }\r\n    /**\r\n     * Updates content rectangle and tells whether it's width or height properties\r\n     * have changed since the last broadcast.\r\n     *\r\n     * @returns {boolean}\r\n     */\r\n    ResizeObservation.prototype.isActive = function () {\r\n        var rect = getContentRect(this.target);\r\n        this.contentRect_ = rect;\r\n        return (rect.width !== this.broadcastWidth ||\r\n            rect.height !== this.broadcastHeight);\r\n    };\r\n    /**\r\n     * Updates 'broadcastWidth' and 'broadcastHeight' properties with a data\r\n     * from the corresponding properties of the last observed content rectangle.\r\n     *\r\n     * @returns {DOMRectInit} Last observed content rectangle.\r\n     */\r\n    ResizeObservation.prototype.broadcastRect = function () {\r\n        var rect = this.contentRect_;\r\n        this.broadcastWidth = rect.width;\r\n        this.broadcastHeight = rect.height;\r\n        return rect;\r\n    };\r\n    return ResizeObservation;\r\n}());\n\nvar ResizeObserverEntry = /** @class */ (function () {\r\n    /**\r\n     * Creates an instance of ResizeObserverEntry.\r\n     *\r\n     * @param {Element} target - Element that is being observed.\r\n     * @param {DOMRectInit} rectInit - Data of the element's content rectangle.\r\n     */\r\n    function ResizeObserverEntry(target, rectInit) {\r\n        var contentRect = createReadOnlyRect(rectInit);\r\n        // According to the specification following properties are not writable\r\n        // and are also not enumerable in the native implementation.\r\n        //\r\n        // Property accessors are not being used as they'd require to define a\r\n        // private WeakMap storage which may cause memory leaks in browsers that\r\n        // don't support this type of collections.\r\n        defineConfigurable(this, { target: target, contentRect: contentRect });\r\n    }\r\n    return ResizeObserverEntry;\r\n}());\n\nvar ResizeObserverSPI = /** @class */ (function () {\r\n    /**\r\n     * Creates a new instance of ResizeObserver.\r\n     *\r\n     * @param {ResizeObserverCallback} callback - Callback function that is invoked\r\n     *      when one of the observed elements changes it's content dimensions.\r\n     * @param {ResizeObserverController} controller - Controller instance which\r\n     *      is responsible for the updates of observer.\r\n     * @param {ResizeObserver} callbackCtx - Reference to the public\r\n     *      ResizeObserver instance which will be passed to callback function.\r\n     */\r\n    function ResizeObserverSPI(callback, controller, callbackCtx) {\r\n        /**\r\n         * Collection of resize observations that have detected changes in dimensions\r\n         * of elements.\r\n         *\r\n         * @private {Array<ResizeObservation>}\r\n         */\r\n        this.activeObservations_ = [];\r\n        /**\r\n         * Registry of the ResizeObservation instances.\r\n         *\r\n         * @private {Map<Element, ResizeObservation>}\r\n         */\r\n        this.observations_ = new MapShim();\r\n        if (typeof callback !== 'function') {\r\n            throw new TypeError('The callback provided as parameter 1 is not a function.');\r\n        }\r\n        this.callback_ = callback;\r\n        this.controller_ = controller;\r\n        this.callbackCtx_ = callbackCtx;\r\n    }\r\n    /**\r\n     * Starts observing provided element.\r\n     *\r\n     * @param {Element} target - Element to be observed.\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverSPI.prototype.observe = function (target) {\r\n        if (!arguments.length) {\r\n            throw new TypeError('1 argument required, but only 0 present.');\r\n        }\r\n        // Do nothing if current environment doesn't have the Element interface.\r\n        if (typeof Element === 'undefined' || !(Element instanceof Object)) {\r\n            return;\r\n        }\r\n        if (!(target instanceof getWindowOf(target).Element)) {\r\n            throw new TypeError('parameter 1 is not of type \"Element\".');\r\n        }\r\n        var observations = this.observations_;\r\n        // Do nothing if element is already being observed.\r\n        if (observations.has(target)) {\r\n            return;\r\n        }\r\n        observations.set(target, new ResizeObservation(target));\r\n        this.controller_.addObserver(this);\r\n        // Force the update of observations.\r\n        this.controller_.refresh();\r\n    };\r\n    /**\r\n     * Stops observing provided element.\r\n     *\r\n     * @param {Element} target - Element to stop observing.\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverSPI.prototype.unobserve = function (target) {\r\n        if (!arguments.length) {\r\n            throw new TypeError('1 argument required, but only 0 present.');\r\n        }\r\n        // Do nothing if current environment doesn't have the Element interface.\r\n        if (typeof Element === 'undefined' || !(Element instanceof Object)) {\r\n            return;\r\n        }\r\n        if (!(target instanceof getWindowOf(target).Element)) {\r\n            throw new TypeError('parameter 1 is not of type \"Element\".');\r\n        }\r\n        var observations = this.observations_;\r\n        // Do nothing if element is not being observed.\r\n        if (!observations.has(target)) {\r\n            return;\r\n        }\r\n        observations.delete(target);\r\n        if (!observations.size) {\r\n            this.controller_.removeObserver(this);\r\n        }\r\n    };\r\n    /**\r\n     * Stops observing all elements.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverSPI.prototype.disconnect = function () {\r\n        this.clearActive();\r\n        this.observations_.clear();\r\n        this.controller_.removeObserver(this);\r\n    };\r\n    /**\r\n     * Collects observation instances the associated element of which has changed\r\n     * it's content rectangle.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverSPI.prototype.gatherActive = function () {\r\n        var _this = this;\r\n        this.clearActive();\r\n        this.observations_.forEach(function (observation) {\r\n            if (observation.isActive()) {\r\n                _this.activeObservations_.push(observation);\r\n            }\r\n        });\r\n    };\r\n    /**\r\n     * Invokes initial callback function with a list of ResizeObserverEntry\r\n     * instances collected from active resize observations.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverSPI.prototype.broadcastActive = function () {\r\n        // Do nothing if observer doesn't have active observations.\r\n        if (!this.hasActive()) {\r\n            return;\r\n        }\r\n        var ctx = this.callbackCtx_;\r\n        // Create ResizeObserverEntry instance for every active observation.\r\n        var entries = this.activeObservations_.map(function (observation) {\r\n            return new ResizeObserverEntry(observation.target, observation.broadcastRect());\r\n        });\r\n        this.callback_.call(ctx, entries, ctx);\r\n        this.clearActive();\r\n    };\r\n    /**\r\n     * Clears the collection of active observations.\r\n     *\r\n     * @returns {void}\r\n     */\r\n    ResizeObserverSPI.prototype.clearActive = function () {\r\n        this.activeObservations_.splice(0);\r\n    };\r\n    /**\r\n     * Tells whether observer has active observations.\r\n     *\r\n     * @returns {boolean}\r\n     */\r\n    ResizeObserverSPI.prototype.hasActive = function () {\r\n        return this.activeObservations_.length > 0;\r\n    };\r\n    return ResizeObserverSPI;\r\n}());\n\n// Registry of internal observers. If WeakMap is not available use current shim\r\n// for the Map collection as it has all required methods and because WeakMap\r\n// can't be fully polyfilled anyway.\r\nvar observers = typeof WeakMap !== 'undefined' ? new WeakMap() : new MapShim();\r\n/**\r\n * ResizeObserver API. Encapsulates the ResizeObserver SPI implementation\r\n * exposing only those methods and properties that are defined in the spec.\r\n */\r\nvar ResizeObserver = /** @class */ (function () {\r\n    /**\r\n     * Creates a new instance of ResizeObserver.\r\n     *\r\n     * @param {ResizeObserverCallback} callback - Callback that is invoked when\r\n     *      dimensions of the observed elements change.\r\n     */\r\n    function ResizeObserver(callback) {\r\n        if (!(this instanceof ResizeObserver)) {\r\n            throw new TypeError('Cannot call a class as a function.');\r\n        }\r\n        if (!arguments.length) {\r\n            throw new TypeError('1 argument required, but only 0 present.');\r\n        }\r\n        var controller = ResizeObserverController.getInstance();\r\n        var observer = new ResizeObserverSPI(callback, controller, this);\r\n        observers.set(this, observer);\r\n    }\r\n    return ResizeObserver;\r\n}());\r\n// Expose public methods of ResizeObserver.\r\n[\r\n    'observe',\r\n    'unobserve',\r\n    'disconnect'\r\n].forEach(function (method) {\r\n    ResizeObserver.prototype[method] = function () {\r\n        var _a;\r\n        return (_a = observers.get(this))[method].apply(_a, arguments);\r\n    };\r\n});\n\nvar index = (function () {\r\n    // Export existing implementation if available.\r\n    if (typeof global$1.ResizeObserver !== 'undefined') {\r\n        return global$1.ResizeObserver;\r\n    }\r\n    return ResizeObserver;\r\n})();\n\nexport default index;\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport ResizeObserver from \"resize-observer-polyfill\"\nimport {\n  NEVER,\n  Observable,\n  Subject,\n  defer,\n  filter,\n  finalize,\n  map,\n  merge,\n  of,\n  shareReplay,\n  startWith,\n  switchMap,\n  tap\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Element offset\n */\nexport interface ElementSize {\n  width: number                        /* Element width */\n  height: number                       /* Element height */\n}\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Resize observer entry subject\n */\nconst entry$ = new Subject<ResizeObserverEntry>()\n\n/**\n * Resize observer observable\n *\n * This observable will create a `ResizeObserver` on the first subscription\n * and will automatically terminate it when there are no more subscribers.\n * It's quite important to centralize observation in a single `ResizeObserver`,\n * as the performance difference can be quite dramatic, as the link shows.\n *\n * @see https://bit.ly/3iIYfEm - Google Groups on performance\n */\nconst observer$ = defer(() => of(\n  new ResizeObserver(entries => {\n    for (const entry of entries)\n      entry$.next(entry)\n  })\n))\n  .pipe(\n    switchMap(observer => merge(NEVER, of(observer))\n      .pipe(\n        finalize(() => observer.disconnect())\n      )\n    ),\n    shareReplay(1)\n  )\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve element size\n *\n * @param el - Element\n *\n * @returns Element size\n */\nexport function getElementSize(\n  el: HTMLElement\n): ElementSize {\n  return {\n    width:  el.offsetWidth,\n    height: el.offsetHeight\n  }\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch element size\n *\n * This function returns an observable that subscribes to a single internal\n * instance of `ResizeObserver` upon subscription, and emit resize events until\n * termination. Note that this function should not be called with the same\n * element twice, as the first unsubscription will terminate observation.\n *\n * Sadly, we can't use the `DOMRect` objects returned by the observer, because\n * we need the emitted values to be consistent with `getElementSize`, which will\n * return the used values (rounded) and not actual values (unrounded). Thus, we\n * use the `offset*` properties. See the linked GitHub issue.\n *\n * @see https://bit.ly/3m0k3he - GitHub issue\n *\n * @param el - Element\n *\n * @returns Element size observable\n */\nexport function watchElementSize(\n  el: HTMLElement\n): Observable<ElementSize> {\n  return observer$\n    .pipe(\n      tap(observer => observer.observe(el)),\n      switchMap(observer => entry$\n        .pipe(\n          filter(({ target }) => target === el),\n          finalize(() => observer.unobserve(el)),\n          map(() => getElementSize(el))\n        )\n      ),\n      startWith(getElementSize(el))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { ElementSize } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve element content size (= scroll width and height)\n *\n * @param el - Element\n *\n * @returns Element content size\n */\nexport function getElementContentSize(\n  el: HTMLElement\n): ElementSize {\n  return {\n    width:  el.scrollWidth,\n    height: el.scrollHeight\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  NEVER,\n  Observable,\n  Subject,\n  defer,\n  distinctUntilChanged,\n  filter,\n  finalize,\n  map,\n  merge,\n  of,\n  shareReplay,\n  switchMap,\n  tap\n} from \"rxjs\"\n\nimport {\n  getElementContentSize,\n  getElementSize,\n  watchElementContentOffset\n} from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Intersection observer entry subject\n */\nconst entry$ = new Subject<IntersectionObserverEntry>()\n\n/**\n * Intersection observer observable\n *\n * This observable will create an `IntersectionObserver` on first subscription\n * and will automatically terminate it when there are no more subscribers.\n *\n * @see https://bit.ly/3iIYfEm - Google Groups on performance\n */\nconst observer$ = defer(() => of(\n  new IntersectionObserver(entries => {\n    for (const entry of entries)\n      entry$.next(entry)\n  }, {\n    threshold: 0\n  })\n))\n  .pipe(\n    switchMap(observer => merge(NEVER, of(observer))\n      .pipe(\n        finalize(() => observer.disconnect())\n      )\n    ),\n    shareReplay(1)\n  )\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch element visibility\n *\n * @param el - Element\n *\n * @returns Element visibility observable\n */\nexport function watchElementVisibility(\n  el: HTMLElement\n): Observable<boolean> {\n  return observer$\n    .pipe(\n      tap(observer => observer.observe(el)),\n      switchMap(observer => entry$\n        .pipe(\n          filter(({ target }) => target === el),\n          finalize(() => observer.unobserve(el)),\n          map(({ isIntersecting }) => isIntersecting)\n        )\n      )\n    )\n}\n\n/**\n * Watch element boundary\n *\n * This function returns an observable which emits whether the bottom content\n * boundary (= scroll offset) of an element is within a certain threshold.\n *\n * @param el - Element\n * @param threshold - Threshold\n *\n * @returns Element boundary observable\n */\nexport function watchElementBoundary(\n  el: HTMLElement, threshold = 16\n): Observable<boolean> {\n  return watchElementContentOffset(el)\n    .pipe(\n      map(({ y }) => {\n        const visible = getElementSize(el)\n        const content = getElementContentSize(el)\n        return y >= (\n          content.height - visible.height - threshold\n        )\n      }),\n      distinctUntilChanged()\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  fromEvent,\n  map,\n  startWith\n} from \"rxjs\"\n\nimport { getElement } from \"../element\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Toggle\n */\nexport type Toggle =\n  | \"drawer\"                           /* Toggle for drawer */\n  | \"search\"                           /* Toggle for search */\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Toggle map\n */\nconst toggles: Record<Toggle, HTMLInputElement> = {\n  drawer: getElement(\"[data-md-toggle=drawer]\"),\n  search: getElement(\"[data-md-toggle=search]\")\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve the value of a toggle\n *\n * @param name - Toggle\n *\n * @returns Toggle value\n */\nexport function getToggle(name: Toggle): boolean {\n  return toggles[name].checked\n}\n\n/**\n * Set toggle\n *\n * Simulating a click event seems to be the most cross-browser compatible way\n * of changing the value while also emitting a `change` event. Before, Material\n * used `CustomEvent` to programmatically change the value of a toggle, but this\n * is a much simpler and cleaner solution which doesn't require a polyfill.\n *\n * @param name - Toggle\n * @param value - Toggle value\n */\nexport function setToggle(name: Toggle, value: boolean): void {\n  if (toggles[name].checked !== value)\n    toggles[name].click()\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch toggle\n *\n * @param name - Toggle\n *\n * @returns Toggle value observable\n */\nexport function watchToggle(name: Toggle): Observable<boolean> {\n  const el = toggles[name]\n  return fromEvent(el, \"change\")\n    .pipe(\n      map(() => el.checked),\n      startWith(el.checked)\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  filter,\n  fromEvent,\n  map,\n  share\n} from \"rxjs\"\n\nimport { getActiveElement } from \"../element\"\nimport { getToggle } from \"../toggle\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Keyboard mode\n */\nexport type KeyboardMode =\n  | \"global\"                           /* Global */\n  | \"search\"                           /* Search is open */\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Keyboard\n */\nexport interface Keyboard {\n  mode: KeyboardMode                   /* Keyboard mode */\n  type: string                         /* Key type */\n  claim(): void                        /* Key claim */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Check whether an element may receive keyboard input\n *\n * @param el - Element\n * @param type - Key type\n *\n * @returns Test result\n */\nfunction isSusceptibleToKeyboard(\n  el: HTMLElement, type: string\n): boolean {\n  switch (el.constructor) {\n\n    /* Input elements */\n    case HTMLInputElement:\n      /* @ts-expect-error - omit unnecessary type cast */\n      if (el.type === \"radio\")\n        return /^Arrow/.test(type)\n      else\n        return true\n\n    /* Select element and textarea */\n    case HTMLSelectElement:\n    case HTMLTextAreaElement:\n      return true\n\n    /* Everything else */\n    default:\n      return el.isContentEditable\n  }\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch keyboard\n *\n * @returns Keyboard observable\n */\nexport function watchKeyboard(): Observable<Keyboard> {\n  return fromEvent<KeyboardEvent>(window, \"keydown\")\n    .pipe(\n      filter(ev => !(ev.metaKey || ev.ctrlKey)),\n      map(ev => ({\n        mode: getToggle(\"search\") ? \"search\" : \"global\",\n        type: ev.key,\n        claim() {\n          ev.preventDefault()\n          ev.stopPropagation()\n        }\n      } as Keyboard)),\n      filter(({ mode, type }) => {\n        if (mode === \"global\") {\n          const active = getActiveElement()\n          if (typeof active !== \"undefined\")\n            return !isSusceptibleToKeyboard(active, type)\n        }\n        return true\n      }),\n      share()\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { Subject } from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve location\n *\n * This function returns a `URL` object (and not `Location`) to normalize the\n * typings across the application. Furthermore, locations need to be tracked\n * without setting them and `Location` is a singleton which represents the\n * current location.\n *\n * @returns URL\n */\nexport function getLocation(): URL {\n  return new URL(location.href)\n}\n\n/**\n * Set location\n *\n * @param url - URL to change to\n */\nexport function setLocation(url: URL): void {\n  location.href = url.href\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch location\n *\n * @returns Location subject\n */\nexport function watchLocation(): Subject<URL> {\n  return new Subject<URL>()\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { JSX as JSXInternal } from \"preact\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * HTML attributes\n */\ntype Attributes =\n  & JSXInternal.HTMLAttributes\n  & JSXInternal.SVGAttributes\n  & Record<string, any>\n\n/**\n * Child element\n */\ntype Child =\n  | HTMLElement\n  | Text\n  | string\n  | number\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Append a child node to an element\n *\n * @param el - Element\n * @param child - Child node(s)\n */\nfunction appendChild(el: HTMLElement, child: Child | Child[]): void {\n\n  /* Handle primitive types (including raw HTML) */\n  if (typeof child === \"string\" || typeof child === \"number\") {\n    el.innerHTML += child.toString()\n\n  /* Handle nodes */\n  } else if (child instanceof Node) {\n    el.appendChild(child)\n\n  /* Handle nested children */\n  } else if (Array.isArray(child)) {\n    for (const node of child)\n      appendChild(el, node)\n  }\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * JSX factory\n *\n * @template T - Element type\n *\n * @param tag - HTML tag\n * @param attributes - HTML attributes\n * @param children - Child elements\n *\n * @returns Element\n */\nexport function h<T extends keyof HTMLElementTagNameMap>(\n  tag: T, attributes?: Attributes | null, ...children: Child[]\n): HTMLElementTagNameMap[T]\n\nexport function h<T extends h.JSX.Element>(\n  tag: string, attributes?: Attributes | null, ...children: Child[]\n): T\n\nexport function h<T extends h.JSX.Element>(\n  tag: string, attributes?: Attributes | null, ...children: Child[]\n): T {\n  const el = document.createElement(tag)\n\n  /* Set attributes, if any */\n  if (attributes)\n    for (const attr of Object.keys(attributes)) {\n      if (typeof attributes[attr] === \"undefined\")\n        continue\n\n      /* Set default attribute or boolean */\n      if (typeof attributes[attr] !== \"boolean\")\n        el.setAttribute(attr, attributes[attr])\n      else\n        el.setAttribute(attr, \"\")\n    }\n\n  /* Append child nodes */\n  for (const child of children)\n    appendChild(el, child)\n\n  /* Return element */\n  return el as T\n}\n\n/* ----------------------------------------------------------------------------\n * Namespace\n * ------------------------------------------------------------------------- */\n\nexport declare namespace h {\n  namespace JSX {\n    type Element = HTMLElement\n    type IntrinsicElements = JSXInternal.IntrinsicElements\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Truncate a string after the given number of characters\n *\n * This is not a very reasonable approach, since the summaries kind of suck.\n * It would be better to create something more intelligent, highlighting the\n * search occurrences and making a better summary out of it, but this note was\n * written three years ago, so who knows if we'll ever fix it.\n *\n * @param value - Value to be truncated\n * @param n - Number of characters\n *\n * @returns Truncated value\n */\nexport function truncate(value: string, n: number): string {\n  let i = n\n  if (value.length > i) {\n    while (value[i] !== \" \" && --i > 0) { /* keep eating */ }\n    return `${value.substring(0, i)}...`\n  }\n  return value\n}\n\n/**\n * Round a number for display with repository facts\n *\n * This is a reverse-engineered version of GitHub's weird rounding algorithm\n * for stars, forks and all other numbers. While all numbers below `1,000` are\n * returned as-is, bigger numbers are converted to fixed numbers:\n *\n * - `1,049` => `1k`\n * - `1,050` => `1.1k`\n * - `1,949` => `1.9k`\n * - `1,950` => `2k`\n *\n * @param value - Original value\n *\n * @returns Rounded value\n */\nexport function round(value: number): string {\n  if (value > 999) {\n    const digits = +((value - 950) % 1000 > 99)\n    return `${((value + 0.000001) / 1000).toFixed(digits)}k`\n  } else {\n    return value.toString()\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  filter,\n  fromEvent,\n  map,\n  shareReplay,\n  startWith\n} from \"rxjs\"\n\nimport { getOptionalElement } from \"~/browser\"\nimport { h } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve location hash\n *\n * @returns Location hash\n */\nexport function getLocationHash(): string {\n  return location.hash.substring(1)\n}\n\n/**\n * Set location hash\n *\n * Setting a new fragment identifier via `location.hash` will have no effect\n * if the value doesn't change. When a new fragment identifier is set, we want\n * the browser to target the respective element at all times, which is why we\n * use this dirty little trick.\n *\n * @param hash - Location hash\n */\nexport function setLocationHash(hash: string): void {\n  const el = h(\"a\", { href: hash })\n  el.addEventListener(\"click\", ev => ev.stopPropagation())\n  el.click()\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch location hash\n *\n * @returns Location hash observable\n */\nexport function watchLocationHash(): Observable<string> {\n  return fromEvent<HashChangeEvent>(window, \"hashchange\")\n    .pipe(\n      map(getLocationHash),\n      startWith(getLocationHash()),\n      filter(hash => hash.length > 0),\n      shareReplay(1)\n    )\n}\n\n/**\n * Watch location target\n *\n * @returns Location target observable\n */\nexport function watchLocationTarget(): Observable<HTMLElement> {\n  return watchLocationHash()\n    .pipe(\n      map(id => getOptionalElement(`[id=\"${id}\"]`)!),\n      filter(el => typeof el !== \"undefined\")\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Observable,\n  fromEvent,\n  fromEventPattern,\n  map,\n  merge,\n  startWith,\n  switchMap\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch media query\n *\n * Note that although `MediaQueryList.addListener` is deprecated we have to\n * use it, because it's the only way to ensure proper downward compatibility.\n *\n * @see https://bit.ly/3dUBH2m - GitHub issue\n *\n * @param query - Media query\n *\n * @returns Media observable\n */\nexport function watchMedia(query: string): Observable<boolean> {\n  const media = matchMedia(query)\n  return fromEventPattern<boolean>(next => (\n    media.addListener(() => next(media.matches))\n  ))\n    .pipe(\n      startWith(media.matches)\n    )\n}\n\n/**\n * Watch print mode\n *\n * @returns Print observable\n */\nexport function watchPrint(): Observable<boolean> {\n  const media = matchMedia(\"print\")\n  return merge(\n    fromEvent(window, \"beforeprint\").pipe(map(() => true)),\n    fromEvent(window, \"afterprint\").pipe(map(() => false))\n  )\n    .pipe(\n      startWith(media.matches)\n    )\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Toggle an observable with a media observable\n *\n * @template T - Data type\n *\n * @param query$ - Media observable\n * @param factory - Observable factory\n *\n * @returns Toggled observable\n */\nexport function at<T>(\n  query$: Observable<boolean>, factory: () => Observable<T>\n): Observable<T> {\n  return query$\n    .pipe(\n      switchMap(active => active ? factory() : EMPTY)\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Observable,\n  catchError,\n  from,\n  map,\n  of,\n  shareReplay,\n  switchMap,\n  throwError\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch the given URL\n *\n * If the request fails (e.g. when dispatched from `file://` locations), the\n * observable will complete without emitting a value.\n *\n * @param url - Request URL\n * @param options - Options\n *\n * @returns Response observable\n */\nexport function request(\n  url: URL | string, options: RequestInit = { credentials: \"same-origin\" }\n): Observable<Response> {\n  return from(fetch(`${url}`, options))\n    .pipe(\n      catchError(() => EMPTY),\n      switchMap(res => res.status !== 200\n        ? throwError(() => new Error(res.statusText))\n        : of(res)\n      )\n    )\n}\n\n/**\n * Fetch JSON from the given URL\n *\n * @template T - Data type\n *\n * @param url - Request URL\n * @param options - Options\n *\n * @returns Data observable\n */\nexport function requestJSON<T>(\n  url: URL | string, options?: RequestInit\n): Observable<T> {\n  return request(url, options)\n    .pipe(\n      switchMap(res => res.json()),\n      shareReplay(1)\n    )\n}\n\n/**\n * Fetch XML from the given URL\n *\n * @param url - Request URL\n * @param options - Options\n *\n * @returns Data observable\n */\nexport function requestXML(\n  url: URL | string, options?: RequestInit\n): Observable<Document> {\n  const dom = new DOMParser()\n  return request(url, options)\n    .pipe(\n      switchMap(res => res.text()),\n      map(res => dom.parseFromString(res, \"text/xml\")),\n      shareReplay(1)\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  defer,\n  finalize,\n  fromEvent,\n  map,\n  merge,\n  switchMap,\n  take,\n  throwError\n} from \"rxjs\"\n\nimport { h } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Create and load a `script` element\n *\n * This function returns an observable that will emit when the script was\n * successfully loaded, or throw an error if it didn't.\n *\n * @param src - Script URL\n *\n * @returns Script observable\n */\nexport function watchScript(src: string): Observable<void> {\n  const script = h(\"script\", { src })\n  return defer(() => {\n    document.head.appendChild(script)\n    return merge(\n      fromEvent(script, \"load\"),\n      fromEvent(script, \"error\")\n        .pipe(\n          switchMap(() => (\n            throwError(() => new ReferenceError(`Invalid script: ${src}`))\n          ))\n        )\n    )\n      .pipe(\n        map(() => undefined),\n        finalize(() => document.head.removeChild(script)),\n        take(1)\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  fromEvent,\n  map,\n  merge,\n  startWith\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Viewport offset\n */\nexport interface ViewportOffset {\n  x: number                            /* Horizontal offset */\n  y: number                            /* Vertical offset */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve viewport offset\n *\n * On iOS Safari, viewport offset can be negative due to overflow scrolling.\n * As this may induce strange behaviors downstream, we'll just limit it to 0.\n *\n * @returns Viewport offset\n */\nexport function getViewportOffset(): ViewportOffset {\n  return {\n    x: Math.max(0, scrollX),\n    y: Math.max(0, scrollY)\n  }\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch viewport offset\n *\n * @returns Viewport offset observable\n */\nexport function watchViewportOffset(): Observable<ViewportOffset> {\n  return merge(\n    fromEvent(window, \"scroll\", { passive: true }),\n    fromEvent(window, \"resize\", { passive: true })\n  )\n    .pipe(\n      map(getViewportOffset),\n      startWith(getViewportOffset())\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  fromEvent,\n  map,\n  startWith\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Viewport size\n */\nexport interface ViewportSize {\n  width: number                        /* Viewport width */\n  height: number                       /* Viewport height */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve viewport size\n *\n * @returns Viewport size\n */\nexport function getViewportSize(): ViewportSize {\n  return {\n    width:  innerWidth,\n    height: innerHeight\n  }\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Watch viewport size\n *\n * @returns Viewport size observable\n */\nexport function watchViewportSize(): Observable<ViewportSize> {\n  return fromEvent(window, \"resize\", { passive: true })\n    .pipe(\n      map(getViewportSize),\n      startWith(getViewportSize())\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  combineLatest,\n  map,\n  shareReplay\n} from \"rxjs\"\n\nimport {\n  ViewportOffset,\n  watchViewportOffset\n} from \"../offset\"\nimport {\n  ViewportSize,\n  watchViewportSize\n} from \"../size\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Viewport\n */\nexport interface Viewport {\n  offset: ViewportOffset               /* Viewport offset */\n  size: ViewportSize                   /* Viewport size */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch viewport\n *\n * @returns Viewport observable\n */\nexport function watchViewport(): Observable<Viewport> {\n  return combineLatest([\n    watchViewportOffset(),\n    watchViewportSize()\n  ])\n    .pipe(\n      map(([offset, size]) => ({ offset, size })),\n      shareReplay(1)\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  combineLatest,\n  distinctUntilKeyChanged,\n  map\n} from \"rxjs\"\n\nimport { Header } from \"~/components\"\n\nimport { getElementOffset } from \"../../element\"\nimport { Viewport } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch viewport relative to element\n *\n * @param el - Element\n * @param options - Options\n *\n * @returns Viewport observable\n */\nexport function watchViewportAt(\n  el: HTMLElement, { viewport$, header$ }: WatchOptions\n): Observable<Viewport> {\n  const size$ = viewport$\n    .pipe(\n      distinctUntilKeyChanged(\"size\")\n    )\n\n  /* Compute element offset */\n  const offset$ = combineLatest([size$, header$])\n    .pipe(\n      map(() => getElementOffset(el))\n    )\n\n  /* Compute relative viewport, return hot observable */\n  return combineLatest([header$, viewport$, offset$])\n    .pipe(\n      map(([{ height }, { offset, size }, { x, y }]) => ({\n        offset: {\n          x: offset.x - x,\n          y: offset.y - y + height\n        },\n        size\n      }))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  fromEvent,\n  map,\n  share,\n  switchMap,\n  tap,\n  throttle\n} from \"rxjs\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Worker message\n */\nexport interface WorkerMessage {\n  type: unknown                        /* Message type */\n  data?: unknown                       /* Message data */\n}\n\n/**\n * Worker handler\n *\n * @template T - Message type\n */\nexport interface WorkerHandler<\n  T extends WorkerMessage\n> {\n  tx$: Subject<T>                      /* Message transmission subject */\n  rx$: Observable<T>                   /* Message receive observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n *\n * @template T - Worker message type\n */\ninterface WatchOptions<T extends WorkerMessage> {\n  tx$: Observable<T>                   /* Message transmission observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch a web worker\n *\n * This function returns an observable that sends all values emitted by the\n * message observable to the web worker. Web worker communication is expected\n * to be bidirectional (request-response) and synchronous. Messages that are\n * emitted during a pending request are throttled, the last one is emitted.\n *\n * @param worker - Web worker\n * @param options - Options\n *\n * @returns Worker message observable\n */\nexport function watchWorker<T extends WorkerMessage>(\n  worker: Worker, { tx$ }: WatchOptions<T>\n): Observable<T> {\n\n  /* Intercept messages from worker-like objects */\n  const rx$ = fromEvent<MessageEvent>(worker, \"message\")\n    .pipe(\n      map(({ data }) => data as T)\n    )\n\n  /* Send and receive messages, return hot observable */\n  return tx$\n    .pipe(\n      throttle(() => rx$, { leading: true, trailing: true }),\n      tap(message => worker.postMessage(message)),\n      switchMap(() => rx$),\n      share()\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { getElement, getLocation } from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Feature flag\n */\nexport type Flag =\n  | \"content.code.annotate\"            /* Code annotations */\n  | \"content.tabs.link\"                /* Link content tabs */\n  | \"header.autohide\"                  /* Hide header */\n  | \"navigation.expand\"                /* Automatic expansion */\n  | \"navigation.indexes\"               /* Section pages */\n  | \"navigation.instant\"               /* Instant loading */\n  | \"navigation.sections\"              /* Section navigation */\n  | \"navigation.tabs\"                  /* Tabs navigation */\n  | \"navigation.tabs.sticky\"           /* Tabs navigation (sticky) */\n  | \"navigation.top\"                   /* Back-to-top button */\n  | \"navigation.tracking\"              /* Anchor tracking */\n  | \"search.highlight\"                 /* Search highlighting */\n  | \"search.share\"                     /* Search sharing */\n  | \"search.suggest\"                   /* Search suggestions */\n  | \"toc.integrate\"                    /* Integrated table of contents */\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Translation\n */\nexport type Translation =\n  | \"clipboard.copy\"                   /* Copy to clipboard */\n  | \"clipboard.copied\"                 /* Copied to clipboard */\n  | \"search.config.lang\"               /* Search language */\n  | \"search.config.pipeline\"           /* Search pipeline */\n  | \"search.config.separator\"          /* Search separator */\n  | \"search.placeholder\"               /* Search */\n  | \"search.result.placeholder\"        /* Type to start searching */\n  | \"search.result.none\"               /* No matching documents */\n  | \"search.result.one\"                /* 1 matching document */\n  | \"search.result.other\"              /* # matching documents */\n  | \"search.result.more.one\"           /* 1 more on this page */\n  | \"search.result.more.other\"         /* # more on this page */\n  | \"search.result.term.missing\"       /* Missing */\n  | \"select.version.title\"             /* Version selector */\n\n/**\n * Translations\n */\nexport type Translations = Record<Translation, string>\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Versioning\n */\nexport interface Versioning {\n  provider: \"mike\"                     /* Version provider */\n  default?: string                     /* Default version */\n}\n\n/**\n * Configuration\n */\nexport interface Config {\n  base: string                         /* Base URL */\n  features: Flag[]                     /* Feature flags */\n  translations: Translations           /* Translations */\n  search: string                       /* Search worker URL */\n  version?: Versioning                 /* Versioning */\n}\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve global configuration and make base URL absolute\n */\nconst script = getElement(\"#__config\")\nconst config: Config = JSON.parse(script.textContent!)\nconfig.base = `${new URL(config.base, getLocation())}`\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve global configuration\n *\n * @returns Global configuration\n */\nexport function configuration(): Config {\n  return config\n}\n\n/**\n * Check whether a feature flag is enabled\n *\n * @param flag - Feature flag\n *\n * @returns Test result\n */\nexport function feature(flag: Flag): boolean {\n  return config.features.includes(flag)\n}\n\n/**\n * Retrieve the translation for the given key\n *\n * @param key - Key to be translated\n * @param value - Positional value, if any\n *\n * @returns Translation\n */\nexport function translation(\n  key: Translation, value?: string | number\n): string {\n  return typeof value !== \"undefined\"\n    ? config.translations[key].replace(\"#\", value.toString())\n    : config.translations[key]\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { getElement, getElements } from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Component type\n */\nexport type ComponentType =\n  | \"announce\"                         /* Announcement bar */\n  | \"container\"                        /* Container */\n  | \"content\"                          /* Content */\n  | \"dialog\"                           /* Dialog */\n  | \"header\"                           /* Header */\n  | \"header-title\"                     /* Header title */\n  | \"header-topic\"                     /* Header topic */\n  | \"main\"                             /* Main area */\n  | \"outdated\"                         /* Version warning */\n  | \"palette\"                          /* Color palette */\n  | \"search\"                           /* Search */\n  | \"search-query\"                     /* Search input */\n  | \"search-result\"                    /* Search results */\n  | \"search-share\"                     /* Search sharing */\n  | \"search-suggest\"                   /* Search suggestions */\n  | \"sidebar\"                          /* Sidebar */\n  | \"skip\"                             /* Skip link */\n  | \"source\"                           /* Repository information */\n  | \"tabs\"                             /* Navigation tabs */\n  | \"toc\"                              /* Table of contents */\n  | \"top\"                              /* Back-to-top button */\n\n/**\n * Component\n *\n * @template T - Component type\n * @template U - Reference type\n */\nexport type Component<\n  T extends {} = {},\n  U extends HTMLElement = HTMLElement\n> =\n  T & {\n    ref: U                             /* Component reference */\n  }\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Component type map\n */\ninterface ComponentTypeMap {\n  \"announce\": HTMLElement              /* Announcement bar */\n  \"container\": HTMLElement             /* Container */\n  \"content\": HTMLElement               /* Content */\n  \"dialog\": HTMLElement                /* Dialog */\n  \"header\": HTMLElement                /* Header */\n  \"header-title\": HTMLElement          /* Header title */\n  \"header-topic\": HTMLElement          /* Header topic */\n  \"main\": HTMLElement                  /* Main area */\n  \"outdated\": HTMLElement              /* Version warning */\n  \"palette\": HTMLElement               /* Color palette */\n  \"search\": HTMLElement                /* Search */\n  \"search-query\": HTMLInputElement     /* Search input */\n  \"search-result\": HTMLElement         /* Search results */\n  \"search-share\": HTMLAnchorElement    /* Search sharing */\n  \"search-suggest\": HTMLElement        /* Search suggestions */\n  \"sidebar\": HTMLElement               /* Sidebar */\n  \"skip\": HTMLAnchorElement            /* Skip link */\n  \"source\": HTMLAnchorElement          /* Repository information */\n  \"tabs\": HTMLElement                  /* Navigation tabs */\n  \"toc\": HTMLElement                   /* Table of contents */\n  \"top\": HTMLAnchorElement             /* Back-to-top button */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Retrieve the element for a given component or throw a reference error\n *\n * @template T - Component type\n *\n * @param type - Component type\n * @param node - Node of reference\n *\n * @returns Element\n */\nexport function getComponentElement<T extends ComponentType>(\n  type: T, node: ParentNode = document\n): ComponentTypeMap[T] {\n  return getElement(`[data-md-component=${type}]`, node)\n}\n\n/**\n * Retrieve all elements for a given component\n *\n * @template T - Component type\n *\n * @param type - Component type\n * @param node - Node of reference\n *\n * @returns Elements\n */\nexport function getComponentElements<T extends ComponentType>(\n  type: T, node: ParentNode = document\n): ComponentTypeMap[T][] {\n  return getElements(`[data-md-component=${type}]`, node)\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport ClipboardJS from \"clipboard\"\nimport {\n  EMPTY,\n  Observable,\n  Subject,\n  defer,\n  distinctUntilChanged,\n  distinctUntilKeyChanged,\n  filter,\n  finalize,\n  map,\n  mergeWith,\n  switchMap,\n  take,\n  takeLast,\n  takeUntil,\n  tap\n} from \"rxjs\"\n\nimport { feature } from \"~/_\"\nimport {\n  getElementContentSize,\n  watchElementSize,\n  watchElementVisibility\n} from \"~/browser\"\nimport { renderClipboardButton } from \"~/templates\"\n\nimport { Component } from \"../../../_\"\nimport {\n  Annotation,\n  mountAnnotationList\n} from \"../../annotation\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Code block\n */\nexport interface CodeBlock {\n  scrollable: boolean                  /* Code block overflows */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  print$: Observable<boolean>          /* Media print observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Global sequence number for Clipboard.js integration\n */\nlet sequence = 0\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Find candidate list element directly following a code block\n *\n * @param el - Code block element\n *\n * @returns List element or nothing\n */\nfunction findCandidateList(el: HTMLElement): HTMLElement | undefined {\n  if (el.nextElementSibling) {\n    const sibling = el.nextElementSibling as HTMLElement\n    if (sibling.tagName === \"OL\")\n      return sibling\n\n    /* Skip empty paragraphs - see https://bit.ly/3r4ZJ2O */\n    else if (sibling.tagName === \"P\" && !sibling.children.length)\n      return findCandidateList(sibling)\n  }\n\n  /* Everything else */\n  return undefined\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch code block\n *\n * This function monitors size changes of the viewport, as well as switches of\n * content tabs with embedded code blocks, as both may trigger overflow.\n *\n * @param el - Code block element\n *\n * @returns Code block observable\n */\nexport function watchCodeBlock(\n  el: HTMLElement\n): Observable<CodeBlock> {\n  return watchElementSize(el)\n    .pipe(\n      map(({ width }) => {\n        const content = getElementContentSize(el)\n        return {\n          scrollable: content.width > width\n        }\n      }),\n      distinctUntilKeyChanged(\"scrollable\")\n    )\n}\n\n/**\n * Mount code block\n *\n * This function ensures that an overflowing code block is focusable through\n * keyboard, so it can be scrolled without a mouse to improve on accessibility.\n * Furthermore, if code annotations are enabled, they are mounted if and only\n * if the code block is currently visible, e.g., not in a hidden content tab.\n *\n * @param el - Code block element\n * @param options - Options\n *\n * @returns Code block and annotation component observable\n */\nexport function mountCodeBlock(\n  el: HTMLElement, options: MountOptions\n): Observable<Component<CodeBlock | Annotation>> {\n  const { matches: hover } = matchMedia(\"(hover)\")\n\n  /* Defer mounting of code block - see https://bit.ly/3vHVoVD */\n  const factory$ = defer(() => {\n    const push$ = new Subject<CodeBlock>()\n    push$.subscribe(({ scrollable }) => {\n      if (scrollable && hover)\n        el.setAttribute(\"tabindex\", \"0\")\n      else\n        el.removeAttribute(\"tabindex\")\n    })\n\n    /* Render button for Clipboard.js integration */\n    if (ClipboardJS.isSupported()) {\n      const parent = el.closest(\"pre\")!\n      parent.id = `__code_${++sequence}`\n      parent.insertBefore(\n        renderClipboardButton(parent.id),\n        el\n      )\n    }\n\n    /* Handle code annotations */\n    const container = el.closest(\".highlight\")\n    if (container instanceof HTMLElement) {\n      const list = findCandidateList(container)\n\n      /* Mount code annotations, if enabled */\n      if (typeof list !== \"undefined\" && (\n        container.classList.contains(\"annotate\") ||\n        feature(\"content.code.annotate\")\n      )) {\n        const annotations$ = mountAnnotationList(list, el, options)\n\n        /* Create and return component */\n        return watchCodeBlock(el)\n          .pipe(\n            tap(state => push$.next(state)),\n            finalize(() => push$.complete()),\n            map(state => ({ ref: el, ...state })),\n            mergeWith(\n              watchElementSize(container)\n                .pipe(\n                  takeUntil(push$.pipe(takeLast(1))),\n                  map(({ width, height }) => width && height),\n                  distinctUntilChanged(),\n                  switchMap(active => active ? annotations$ : EMPTY)\n                )\n            )\n          )\n      }\n    }\n\n    /* Create and return component */\n    return watchCodeBlock(el)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n\n  /* Mount code block on first sight */\n  return watchElementVisibility(el)\n    .pipe(\n      filter(visible => visible),\n      take(1),\n      switchMap(() => factory$)\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { h } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render an empty annotation\n *\n * @param id - Annotation identifier\n *\n * @returns Element\n */\nexport function renderAnnotation(id: number): HTMLElement {\n  return (\n    <aside class=\"md-annotation\" tabIndex={0}>\n      <div class=\"md-annotation__inner md-tooltip\">\n        <div class=\"md-tooltip__inner md-typeset\"></div>\n      </div>\n      <span class=\"md-annotation__index\">\n        <span data-md-annotation-id={id}></span>\n      </span>\n    </aside>\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { translation } from \"~/_\"\nimport { h } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render a 'copy-to-clipboard' button\n *\n * @param id - Unique identifier\n *\n * @returns Element\n */\nexport function renderClipboardButton(id: string): HTMLElement {\n  return (\n    <button\n      class=\"md-clipboard md-icon\"\n      title={translation(\"clipboard.copy\")}\n      data-clipboard-target={`#${id} > code`}\n    ></button>\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { ComponentChild } from \"preact\"\n\nimport { feature, translation } from \"~/_\"\nimport {\n  SearchDocument,\n  SearchMetadata,\n  SearchResultItem\n} from \"~/integrations/search\"\nimport { h, truncate } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Render flag\n */\nconst enum Flag {\n  TEASER = 1,                          /* Render teaser */\n  PARENT = 2                           /* Render as parent */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper function\n * ------------------------------------------------------------------------- */\n\n/**\n * Render a search document\n *\n * @param document - Search document\n * @param flag - Render flags\n *\n * @returns Element\n */\nfunction renderSearchDocument(\n  document: SearchDocument & SearchMetadata, flag: Flag\n): HTMLElement {\n  const parent = flag & Flag.PARENT\n  const teaser = flag & Flag.TEASER\n\n  /* Render missing query terms */\n  const missing = Object.keys(document.terms)\n    .filter(key => !document.terms[key])\n    .reduce<ComponentChild[]>((list, key) => [\n      ...list, <del>{key}</del>, \" \"\n    ], [])\n    .slice(0, -1)\n\n  /* Assemble query string for highlighting */\n  const url = new URL(document.location)\n  if (feature(\"search.highlight\"))\n    url.searchParams.set(\"h\", Object.entries(document.terms)\n      .filter(([, match]) => match)\n      .reduce((highlight, [value]) => `${highlight} ${value}`.trim(), \"\")\n    )\n\n  /* Render article or section, depending on flags */\n  return (\n    <a href={`${url}`} class=\"md-search-result__link\" tabIndex={-1}>\n      <article\n        class={[\"md-search-result__article\", ...parent\n          ? [\"md-search-result__article--document\"]\n          : []\n        ].join(\" \")}\n        data-md-score={document.score.toFixed(2)}\n      >\n        {parent > 0 && <div class=\"md-search-result__icon md-icon\"></div>}\n        <h1 class=\"md-search-result__title\">{document.title}</h1>\n        {teaser > 0 && document.text.length > 0 &&\n          <p class=\"md-search-result__teaser\">\n            {truncate(document.text, 320)}\n          </p>\n        }\n        {document.tags && document.tags.map(tag => (\n          <span class=\"md-tag\">{tag}</span>\n        ))}\n        {teaser > 0 && missing.length > 0 &&\n          <p class=\"md-search-result__terms\">\n            {translation(\"search.result.term.missing\")}: {...missing}\n          </p>\n        }\n      </article>\n    </a>\n  )\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render a search result\n *\n * @param result - Search result\n *\n * @returns Element\n */\nexport function renderSearchResultItem(\n  result: SearchResultItem\n): HTMLElement {\n  const threshold = result[0].score\n  const docs = [...result]\n\n  /* Find and extract parent article */\n  const parent = docs.findIndex(doc => !doc.location.includes(\"#\"))\n  const [article] = docs.splice(parent, 1)\n\n  /* Determine last index above threshold */\n  let index = docs.findIndex(doc => doc.score < threshold)\n  if (index === -1)\n    index = docs.length\n\n  /* Partition sections */\n  const best = docs.slice(0, index)\n  const more = docs.slice(index)\n\n  /* Render children */\n  const children = [\n    renderSearchDocument(article, Flag.PARENT | +(!parent && index === 0)),\n    ...best.map(section => renderSearchDocument(section, Flag.TEASER)),\n    ...more.length ? [\n      <details class=\"md-search-result__more\">\n        <summary tabIndex={-1}>\n          {more.length > 0 && more.length === 1\n            ? translation(\"search.result.more.one\")\n            : translation(\"search.result.more.other\", more.length)\n          }\n        </summary>\n        {...more.map(section => renderSearchDocument(section, Flag.TEASER))}\n      </details>\n    ] : []\n  ]\n\n  /* Render search result */\n  return (\n    <li class=\"md-search-result__item\">\n      {children}\n    </li>\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { SourceFacts } from \"~/components\"\nimport { h, round } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render repository facts\n *\n * @param facts - Repository facts\n *\n * @returns Element\n */\nexport function renderSourceFacts(facts: SourceFacts): HTMLElement {\n  return (\n    <ul class=\"md-source__facts\">\n      {Object.entries(facts).map(([key, value]) => (\n        <li class={`md-source__fact md-source__fact--${key}`}>\n          {typeof value === \"number\" ? round(value) : value}\n        </li>\n      ))}\n    </ul>\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { h } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Tabbed control type\n */\ntype TabbedControlType =\n  | \"prev\"\n  | \"next\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render control for content tabs\n *\n * @param type - Control type\n *\n * @returns Element\n */\nexport function renderTabbedControl(\n  type: TabbedControlType\n): HTMLElement {\n  const classes = `tabbed-control tabbed-control--${type}`\n  return (\n    <div class={classes} hidden>\n      <button class=\"tabbed-button\" tabIndex={-1}></button>\n    </div>\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { h } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render a table inside a wrapper to improve scrolling on mobile\n *\n * @param table - Table element\n *\n * @returns Element\n */\nexport function renderTable(table: HTMLElement): HTMLElement {\n  return (\n    <div class=\"md-typeset__scrollwrap\">\n      <div class=\"md-typeset__table\">\n        {table}\n      </div>\n    </div>\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { configuration, translation } from \"~/_\"\nimport { h } from \"~/utilities\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Version\n */\nexport interface Version {\n  version: string                      /* Version identifier */\n  title: string                        /* Version title */\n  aliases: string[]                    /* Version aliases */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render a version\n *\n * @param version - Version\n *\n * @returns Element\n */\nfunction renderVersion(version: Version): HTMLElement {\n  const config = configuration()\n\n  /* Ensure trailing slash, see https://bit.ly/3rL5u3f */\n  const url = new URL(`../${version.version}/`, config.base)\n  return (\n    <li class=\"md-version__item\">\n      <a href={`${url}`} class=\"md-version__link\">\n        {version.title}\n      </a>\n    </li>\n  )\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Render a version selector\n *\n * @param versions - Versions\n * @param active - Active version\n *\n * @returns Element\n */\nexport function renderVersionSelector(\n  versions: Version[], active: Version\n): HTMLElement {\n  return (\n    <div class=\"md-version\">\n      <button\n        class=\"md-version__current\"\n        aria-label={translation(\"select.version.title\")}\n      >\n        {active.title}\n      </button>\n      <ul class=\"md-version__list\">\n        {versions.map(renderVersion)}\n      </ul>\n    </div>\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Observable,\n  Subject,\n  animationFrameScheduler,\n  combineLatest,\n  defer,\n  finalize,\n  fromEvent,\n  map,\n  switchMap,\n  take,\n  takeLast,\n  takeUntil,\n  tap,\n  throttleTime\n} from \"rxjs\"\n\nimport {\n  ElementOffset,\n  getElement,\n  getElementSize,\n  watchElementContentOffset,\n  watchElementFocus,\n  watchElementOffset,\n  watchElementVisibility\n} from \"~/browser\"\n\nimport { Component } from \"../../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Annotation\n */\nexport interface Annotation {\n  active: boolean                      /* Annotation is active */\n  offset: ElementOffset                /* Annotation offset */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch annotation\n *\n * @param el - Annotation element\n * @param container - Containing element\n *\n * @returns Annotation observable\n */\nexport function watchAnnotation(\n  el: HTMLElement, container: HTMLElement\n): Observable<Annotation> {\n  const offset$ = defer(() => combineLatest([\n    watchElementOffset(el),\n    watchElementContentOffset(container)\n  ]))\n    .pipe(\n      map(([{ x, y }, scroll]) => {\n        const { width } = getElementSize(el)\n        return ({\n          x: x - scroll.x + width / 2,\n          y: y - scroll.y\n        })\n      })\n    )\n\n  /* Actively watch annotation on focus */\n  return watchElementFocus(el)\n    .pipe(\n      switchMap(active => offset$\n        .pipe(\n          map(offset => ({ active, offset })),\n          take(+!active || Infinity)\n        )\n      )\n    )\n}\n\n/**\n * Mount annotation\n *\n * @param el - Annotation element\n * @param container - Containing element\n *\n * @returns Annotation component observable\n */\nexport function mountAnnotation(\n  el: HTMLElement, container: HTMLElement\n): Observable<Component<Annotation>> {\n  return defer(() => {\n    const push$ = new Subject<Annotation>()\n    push$.subscribe({\n\n      /* Handle emission */\n      next({ offset }) {\n        el.style.setProperty(\"--md-tooltip-x\", `${offset.x}px`)\n        el.style.setProperty(\"--md-tooltip-y\", `${offset.y}px`)\n      },\n\n      /* Handle complete */\n      complete() {\n        el.style.removeProperty(\"--md-tooltip-x\")\n        el.style.removeProperty(\"--md-tooltip-y\")\n      }\n    })\n\n    /* Start animation only when annotation is visible */\n    const done$ = push$.pipe(takeLast(1))\n    watchElementVisibility(el)\n      .pipe(\n        takeUntil(done$)\n      )\n        .subscribe(visible => {\n          el.toggleAttribute(\"data-md-visible\", visible)\n        })\n\n    /* Track relative origin of tooltip */\n    push$\n      .pipe(\n        throttleTime(500, animationFrameScheduler),\n        map(() => container.getBoundingClientRect()),\n        map(({ x }) => x)\n      )\n        .subscribe({\n\n          /* Handle emission */\n          next(origin) {\n            if (origin)\n              el.style.setProperty(\"--md-tooltip-0\", `${-origin}px`)\n            else\n              el.style.removeProperty(\"--md-tooltip-0\")\n          },\n\n          /* Handle complete */\n          complete() {\n            el.style.removeProperty(\"--md-tooltip-0\")\n          }\n        })\n\n    /* Close open annotation on click */\n    const index = getElement(\":scope > :last-child\", el)\n    const blur$ = fromEvent(index, \"mousedown\", { once: true })\n    push$\n      .pipe(\n        switchMap(({ active }) => active ? blur$ : EMPTY),\n        tap(ev => ev.preventDefault())\n      )\n        .subscribe(() => el.blur())\n\n    /* Create and return component */\n    return watchAnnotation(el, container)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Observable,\n  Subject,\n  defer,\n  finalize,\n  merge,\n  share,\n  takeLast,\n  takeUntil\n} from \"rxjs\"\n\nimport {\n  getElement,\n  getElements,\n  getOptionalElement\n} from \"~/browser\"\nimport { renderAnnotation } from \"~/templates\"\n\nimport { Component } from \"../../../_\"\nimport {\n  Annotation,\n  mountAnnotation\n} from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  print$: Observable<boolean>          /* Media print observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Find all annotation markers in the given code block\n *\n * @param container - Containing element\n *\n * @returns Annotation markers\n */\nfunction findAnnotationMarkers(container: HTMLElement): Text[] {\n  const markers: Text[] = []\n  for (const comment of getElements(\".c, .c1, .cm\", container)) {\n    let match: RegExpExecArray | null\n\n    /* Split text at marker and add to list */\n    let text = comment.firstChild as Text\n    if (text instanceof Text)\n      while ((match = /\\((\\d+)\\)/.exec(text.textContent!))) {\n        const marker = text.splitText(match.index)\n        text = marker.splitText(match[0].length)\n        markers.push(marker)\n      }\n  }\n  return markers\n}\n\n/**\n * Swap the child nodes of two elements\n *\n * @param source - Source element\n * @param target - Target element\n */\nfunction swap(source: HTMLElement, target: HTMLElement): void {\n  target.append(...Array.from(source.childNodes))\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount annotation list\n *\n * This function analyzes the containing code block and checks for markers\n * referring to elements in the given annotation list. If no markers are found,\n * the list is left untouched. Otherwise, list elements are rendered as\n * annotations inside the code block.\n *\n * @param el - Annotation list element\n * @param container - Containing element\n * @param options - Options\n *\n * @returns Annotation component observable\n */\nexport function mountAnnotationList(\n  el: HTMLElement, container: HTMLElement, { print$ }: MountOptions\n): Observable<Component<Annotation>> {\n\n  /* Find and replace all markers with empty annotations */\n  const annotations = new Map<number, HTMLElement>()\n  for (const marker of findAnnotationMarkers(container)) {\n    const [, id] = marker.textContent!.match(/\\((\\d+)\\)/)!\n    if (getOptionalElement(`li:nth-child(${id})`, el)) {\n      annotations.set(+id, renderAnnotation(+id))\n      marker.replaceWith(annotations.get(+id)!)\n    }\n  }\n\n  /* Keep list if there are no annotations to render */\n  if (annotations.size === 0)\n    return EMPTY\n\n  /* Create and return component */\n  return defer(() => {\n    const done$ = new Subject<void>()\n\n    /* Handle print mode - see https://bit.ly/3rgPdpt */\n    print$\n      .pipe(\n        takeUntil(done$.pipe(takeLast(1)))\n      )\n        .subscribe(active => {\n          el.hidden = !active\n\n          /* Show annotations in code block or list (print) */\n          for (const [id, annotation] of annotations) {\n            const inner = getElement(\".md-typeset\", annotation)\n            const child = getElement(`li:nth-child(${id})`, el)\n            if (!active)\n              swap(child, inner)\n            else\n              swap(inner, child)\n          }\n        })\n\n    /* Create and return component */\n    return merge(...[...annotations]\n      .map(([, annotation]) => (\n        mountAnnotation(annotation, container)\n      ))\n    )\n      .pipe(\n        finalize(() => done$.complete()),\n        share()\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  map,\n  of,\n  shareReplay,\n  tap\n} from \"rxjs\"\n\nimport { watchScript } from \"~/browser\"\nimport { h } from \"~/utilities\"\n\nimport { Component } from \"../../../_\"\n\nimport themeCSS from \"./index.css\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mermaid diagram\n */\nexport interface Mermaid {}\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Mermaid instance observable\n */\nlet mermaid$: Observable<void>\n\n/**\n * Global sequence number for diagrams\n */\nlet sequence = 0\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch Mermaid script\n *\n * @returns Mermaid scripts observable\n */\nfunction fetchScripts(): Observable<void> {\n  return typeof mermaid === \"undefined\" || mermaid instanceof Element\n    ? watchScript(\"https://unpkg.com/mermaid@9.0.1/dist/mermaid.min.js\")\n    : of(undefined)\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount Mermaid diagram\n *\n * @param el - Code block element\n *\n * @returns Mermaid diagram component observable\n */\nexport function mountMermaid(\n  el: HTMLElement\n): Observable<Component<Mermaid>> {\n  el.classList.remove(\"mermaid\") // Hack: mitigate https://bit.ly/3CiN6Du\n  mermaid$ ||= fetchScripts()\n    .pipe(\n      tap(() => mermaid.initialize({\n        startOnLoad: false,\n        themeCSS\n      })),\n      map(() => undefined),\n      shareReplay(1)\n    )\n\n  /* Render diagram */\n  mermaid$.subscribe(() => {\n    el.classList.add(\"mermaid\") // Hack: mitigate https://bit.ly/3CiN6Du\n    const id = `__mermaid_${sequence++}`\n    const host = h(\"div\", { class: \"mermaid\" })\n    mermaid.mermaidAPI.render(id, el.textContent, (svg: string) => {\n\n      /* Create a shadow root and inject diagram */\n      const shadow = host.attachShadow({ mode: \"closed\" })\n      shadow.innerHTML = svg\n\n      /* Replace code block with diagram */\n      el.replaceWith(host)\n    })\n  })\n\n  /* Create and return component */\n  return mermaid$\n    .pipe(\n      map(() => ({ ref: el }))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  defer,\n  filter,\n  finalize,\n  map,\n  merge,\n  tap\n} from \"rxjs\"\n\nimport { Component } from \"../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Details\n */\nexport interface Details {\n  action: \"open\" | \"close\"             /* Details state */\n  reveal?: boolean                     /* Details is revealed */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  target$: Observable<HTMLElement>     /* Location target observable */\n  print$: Observable<boolean>          /* Media print observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  target$: Observable<HTMLElement>     /* Location target observable */\n  print$: Observable<boolean>          /* Media print observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch details\n *\n * @param el - Details element\n * @param options - Options\n *\n * @returns Details observable\n */\nexport function watchDetails(\n  el: HTMLDetailsElement, { target$, print$ }: WatchOptions\n): Observable<Details> {\n  let open = true\n  return merge(\n\n    /* Open and focus details on location target */\n    target$\n      .pipe(\n        map(target => target.closest(\"details:not([open])\")!),\n        filter(details => el === details),\n        map(() => ({\n          action: \"open\", reveal: true\n        }) as Details)\n      ),\n\n    /* Open details on print and close afterwards */\n    print$\n      .pipe(\n        filter(active => active || !open),\n        tap(() => open = el.open),\n        map(active => ({\n          action: active ? \"open\" : \"close\"\n        }) as Details)\n      )\n  )\n}\n\n/**\n * Mount details\n *\n * This function ensures that `details` tags are opened on anchor jumps and\n * prior to printing, so the whole content of the page is visible.\n *\n * @param el - Details element\n * @param options - Options\n *\n * @returns Details component observable\n */\nexport function mountDetails(\n  el: HTMLDetailsElement, options: MountOptions\n): Observable<Component<Details>> {\n  return defer(() => {\n    const push$ = new Subject<Details>()\n    push$.subscribe(({ action, reveal }) => {\n      if (action === \"open\")\n        el.setAttribute(\"open\", \"\")\n      else\n        el.removeAttribute(\"open\")\n      if (reveal)\n        el.scrollIntoView()\n    })\n\n    /* Create and return component */\n    return watchDetails(el, options)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { Observable, of } from \"rxjs\"\n\nimport { renderTable } from \"~/templates\"\nimport { h } from \"~/utilities\"\n\nimport { Component } from \"../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Data table\n */\nexport interface DataTable {}\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Sentinel for replacement\n */\nconst sentinel = h(\"table\")\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount data table\n *\n * This function wraps a data table in another scrollable container, so it can\n * be smoothly scrolled on smaller screen sizes and won't break the layout.\n *\n * @param el - Data table element\n *\n * @returns Data table component observable\n */\nexport function mountDataTable(\n  el: HTMLElement\n): Observable<Component<DataTable>> {\n  el.replaceWith(sentinel)\n  sentinel.replaceWith(renderTable(el))\n\n  /* Create and return component */\n  return of({ ref: el })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  animationFrameScheduler,\n  asyncScheduler,\n  auditTime,\n  combineLatest,\n  defer,\n  finalize,\n  fromEvent,\n  map,\n  merge,\n  skip,\n  startWith,\n  subscribeOn,\n  takeLast,\n  takeUntil,\n  tap\n} from \"rxjs\"\n\nimport { feature } from \"~/_\"\nimport {\n  getElement,\n  getElementContentOffset,\n  getElementContentSize,\n  getElementOffset,\n  getElementSize,\n  getElements,\n  watchElementContentOffset,\n  watchElementSize\n} from \"~/browser\"\nimport { renderTabbedControl } from \"~/templates\"\n\nimport { Component } from \"../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Content tabs\n */\nexport interface ContentTabs {\n  active: HTMLLabelElement             /* Active tab label */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch content tabs\n *\n * @param el - Content tabs element\n *\n * @returns Content tabs observable\n */\nexport function watchContentTabs(\n  el: HTMLElement\n): Observable<ContentTabs> {\n  const inputs = getElements<HTMLInputElement>(\":scope > input\", el)\n  const initial = inputs.find(input => input.checked) || inputs[0]\n  return merge(...inputs.map(input => fromEvent(input, \"change\")\n    .pipe(\n      map(() => getElement<HTMLLabelElement>(`label[for=\"${input.id}\"]`))\n    )\n  ))\n    .pipe(\n      startWith(getElement<HTMLLabelElement>(`label[for=\"${initial.id}\"]`)),\n      map(active => ({ active }))\n    )\n}\n\n/**\n * Mount content tabs\n *\n * This function scrolls the active tab into view. While this functionality is\n * provided by browsers as part of `scrollInfoView`, browsers will always also\n * scroll the vertical axis, which we do not want. Thus, we decided to provide\n * this functionality ourselves.\n *\n * @param el - Content tabs element\n *\n * @returns Content tabs component observable\n */\nexport function mountContentTabs(\n  el: HTMLElement\n): Observable<Component<ContentTabs>> {\n\n  /* Render content tab previous button for pagination */\n  const prev = renderTabbedControl(\"prev\")\n  el.append(prev)\n\n  /* Render content tab next button for pagination */\n  const next = renderTabbedControl(\"next\")\n  el.append(next)\n\n  /* Mount component on subscription */\n  const container = getElement(\".tabbed-labels\", el)\n  return defer(() => {\n    const push$ = new Subject<ContentTabs>()\n    const done$ = push$.pipe(takeLast(1))\n    combineLatest([push$, watchElementSize(el)])\n      .pipe(\n        auditTime(1, animationFrameScheduler),\n        takeUntil(done$)\n      )\n        .subscribe({\n\n          /* Handle emission */\n          next([{ active }, size]) {\n            const offset = getElementOffset(active)\n            const { width } = getElementSize(active)\n\n            /* Set tab indicator offset and width */\n            el.style.setProperty(\"--md-indicator-x\", `${offset.x}px`)\n            el.style.setProperty(\"--md-indicator-width\", `${width}px`)\n\n            /* Scroll container to active content tab */\n            const content = getElementContentOffset(container)\n            if (\n              offset.x         < content.x              ||\n              offset.x + width > content.x + size.width\n            )\n              container.scrollTo({\n                left: Math.max(0, offset.x - 16),\n                behavior: \"smooth\"\n              })\n          },\n\n          /* Handle complete */\n          complete() {\n            el.style.removeProperty(\"--md-indicator-x\")\n            el.style.removeProperty(\"--md-indicator-width\")\n          }\n        })\n\n    /* Hide content tab buttons on borders */\n    combineLatest([\n      watchElementContentOffset(container),\n      watchElementSize(container)\n    ])\n      .pipe(\n        takeUntil(done$)\n      )\n        .subscribe(([offset, size]) => {\n          const content = getElementContentSize(container)\n          prev.hidden = offset.x < 16\n          next.hidden = offset.x > content.width - size.width - 16\n        })\n\n    /* Paginate content tab container on click */\n    merge(\n      fromEvent(prev, \"click\").pipe(map(() => -1)),\n      fromEvent(next, \"click\").pipe(map(() => +1))\n    )\n      .pipe(\n        takeUntil(done$)\n      )\n        .subscribe(direction => {\n          const { width } = getElementSize(container)\n          container.scrollBy({\n            left: width * direction,\n            behavior: \"smooth\"\n          })\n        })\n\n    /* Set up linking of content tabs, if enabled */\n    if (feature(\"content.tabs.link\"))\n      push$.pipe(skip(1))\n        .subscribe(({ active }) => {\n          const tab = active.innerText.trim()\n          for (const set of getElements(\"[data-tabs]\"))\n            for (const input of getElements<HTMLInputElement>(\n              \":scope > input\", set\n            )) {\n              const label = getElement(`label[for=\"${input.id}\"]`)\n              if (label.innerText.trim() === tab) {\n                input.click()\n                break\n              }\n            }\n\n          /* Persist active tabs in local storage */\n          const tabs = __md_get<string[]>(\"__tabs\") || []\n          __md_set(\"__tabs\", [...new Set([tab, ...tabs])])\n        })\n\n    /* Create and return component */\n    return watchContentTabs(el)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n    .pipe(\n      subscribeOn(asyncScheduler)\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { Observable, merge } from \"rxjs\"\n\nimport { getElements } from \"~/browser\"\n\nimport { Component } from \"../../_\"\nimport { Annotation } from \"../annotation\"\nimport {\n  CodeBlock,\n  Mermaid,\n  mountCodeBlock,\n  mountMermaid\n} from \"../code\"\nimport {\n  Details,\n  mountDetails\n} from \"../details\"\nimport {\n  DataTable,\n  mountDataTable\n} from \"../table\"\nimport {\n  ContentTabs,\n  mountContentTabs\n} from \"../tabs\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Content\n */\nexport type Content =\n  | Annotation\n  | ContentTabs\n  | CodeBlock\n  | Mermaid\n  | DataTable\n  | Details\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  target$: Observable<HTMLElement>     /* Location target observable */\n  print$: Observable<boolean>          /* Media print observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount content\n *\n * This function mounts all components that are found in the content of the\n * actual article, including code blocks, data tables and details.\n *\n * @param el - Content element\n * @param options - Options\n *\n * @returns Content component observable\n */\nexport function mountContent(\n  el: HTMLElement, { target$, print$ }: MountOptions\n): Observable<Component<Content>> {\n  return merge(\n\n    /* Code blocks */\n    ...getElements(\"pre:not(.mermaid) > code\", el)\n      .map(child => mountCodeBlock(child, { print$ })),\n\n    /* Mermaid diagrams */\n    ...getElements(\"pre.mermaid\", el)\n      .map(child => mountMermaid(child)),\n\n    /* Data tables */\n    ...getElements(\"table:not([class])\", el)\n      .map(child => mountDataTable(child)),\n\n    /* Details */\n    ...getElements(\"details\", el)\n      .map(child => mountDetails(child, { target$, print$ })),\n\n    /* Content tabs */\n    ...getElements(\"[data-tabs]\", el)\n      .map(child => mountContentTabs(child))\n  )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  defer,\n  delay,\n  finalize,\n  map,\n  merge,\n  of,\n  switchMap,\n  tap\n} from \"rxjs\"\n\nimport { getElement } from \"~/browser\"\n\nimport { Component } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Dialog\n */\nexport interface Dialog {\n  message: string                      /* Dialog message */\n  active: boolean                      /* Dialog is active */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  alert$: Subject<string>              /* Alert subject */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  alert$: Subject<string>              /* Alert subject */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch dialog\n *\n * @param _el - Dialog element\n * @param options - Options\n *\n * @returns Dialog observable\n */\nexport function watchDialog(\n  _el: HTMLElement, { alert$ }: WatchOptions\n): Observable<Dialog> {\n  return alert$\n    .pipe(\n      switchMap(message => merge(\n        of(true),\n        of(false).pipe(delay(2000))\n      )\n        .pipe(\n          map(active => ({ message, active }))\n        )\n      )\n    )\n}\n\n/**\n * Mount dialog\n *\n * This function reveals the dialog in the right corner when a new alert is\n * emitted through the subject that is passed as part of the options.\n *\n * @param el - Dialog element\n * @param options - Options\n *\n * @returns Dialog component observable\n */\nexport function mountDialog(\n  el: HTMLElement, options: MountOptions\n): Observable<Component<Dialog>> {\n  const inner = getElement(\".md-typeset\", el)\n  return defer(() => {\n    const push$ = new Subject<Dialog>()\n    push$.subscribe(({ message, active }) => {\n      el.classList.toggle(\"md-dialog--active\", active)\n      inner.textContent = message\n    })\n\n    /* Create and return component */\n    return watchDialog(el, options)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  bufferCount,\n  combineLatest,\n  combineLatestWith,\n  defer,\n  distinctUntilChanged,\n  distinctUntilKeyChanged,\n  filter,\n  map,\n  of,\n  shareReplay,\n  startWith,\n  switchMap,\n  takeLast,\n  takeUntil\n} from \"rxjs\"\n\nimport { feature } from \"~/_\"\nimport {\n  Viewport,\n  watchElementSize,\n  watchToggle\n} from \"~/browser\"\n\nimport { Component } from \"../../_\"\nimport { Main } from \"../../main\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Header\n */\nexport interface Header {\n  height: number                       /* Header visible height */\n  hidden: boolean                      /* Header is hidden */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n  main$: Observable<Main>              /* Main area observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Compute whether the header is hidden\n *\n * If the user scrolls past a certain threshold, the header can be hidden when\n * scrolling down, and shown when scrolling up.\n *\n * @param options - Options\n *\n * @returns Toggle observable\n */\nfunction isHidden({ viewport$ }: WatchOptions): Observable<boolean> {\n  if (!feature(\"header.autohide\"))\n    return of(false)\n\n  /* Compute direction and turning point */\n  const direction$ = viewport$\n    .pipe(\n      map(({ offset: { y } }) => y),\n      bufferCount(2, 1),\n      map(([a, b]) => [a < b, b] as const),\n      distinctUntilKeyChanged(0)\n    )\n\n  /* Compute whether header should be hidden */\n  const hidden$ = combineLatest([viewport$, direction$])\n    .pipe(\n      filter(([{ offset }, [, y]]) => Math.abs(y - offset.y) > 100),\n      map(([, [direction]]) => direction),\n      distinctUntilChanged()\n    )\n\n  /* Compute threshold for hiding */\n  const search$ = watchToggle(\"search\")\n  return combineLatest([viewport$, search$])\n    .pipe(\n      map(([{ offset }, search]) => offset.y > 400 && !search),\n      distinctUntilChanged(),\n      switchMap(active => active ? hidden$ : of(false)),\n      startWith(false)\n    )\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch header\n *\n * @param el - Header element\n * @param options - Options\n *\n * @returns Header observable\n */\nexport function watchHeader(\n  el: HTMLElement, options: WatchOptions\n): Observable<Header> {\n  return defer(() => combineLatest([\n    watchElementSize(el),\n    isHidden(options)\n  ]))\n    .pipe(\n      map(([{ height }, hidden]) => ({\n        height,\n        hidden\n      })),\n      distinctUntilChanged((a, b) => (\n        a.height === b.height &&\n        a.hidden === b.hidden\n      )),\n      shareReplay(1)\n    )\n}\n\n/**\n * Mount header\n *\n * This function manages the different states of the header, i.e. whether it's\n * hidden or rendered with a shadow. This depends heavily on the main area.\n *\n * @param el - Header element\n * @param options - Options\n *\n * @returns Header component observable\n */\nexport function mountHeader(\n  el: HTMLElement, { header$, main$ }: MountOptions\n): Observable<Component<Header>> {\n  return defer(() => {\n    const push$ = new Subject<Main>()\n    const done$ = push$.pipe(takeLast(1))\n    push$\n      .pipe(\n        distinctUntilKeyChanged(\"active\"),\n        combineLatestWith(header$)\n      )\n        .subscribe(([{ active }, { hidden }]) => {\n          el.classList.toggle(\"md-header--shadow\", active && !hidden)\n          el.hidden = hidden\n        })\n\n    /* Link to main area */\n    main$.subscribe(push$)\n\n    /* Create and return component */\n    return header$\n      .pipe(\n        takeUntil(done$),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Observable,\n  Subject,\n  defer,\n  distinctUntilKeyChanged,\n  finalize,\n  map,\n  tap\n} from \"rxjs\"\n\nimport {\n  Viewport,\n  getElementSize,\n  getOptionalElement,\n  watchViewportAt\n} from \"~/browser\"\n\nimport { Component } from \"../../_\"\nimport { Header } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Header\n */\nexport interface HeaderTitle {\n  active: boolean                      /* Header title is active */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch header title\n *\n * @param el - Heading element\n * @param options - Options\n *\n * @returns Header title observable\n */\nexport function watchHeaderTitle(\n  el: HTMLElement, { viewport$, header$ }: WatchOptions\n): Observable<HeaderTitle> {\n  return watchViewportAt(el, { viewport$, header$ })\n    .pipe(\n      map(({ offset: { y } }) => {\n        const { height } = getElementSize(el)\n        return {\n          active: y >= height\n        }\n      }),\n      distinctUntilKeyChanged(\"active\")\n    )\n}\n\n/**\n * Mount header title\n *\n * This function swaps the header title from the site title to the title of the\n * current page when the user scrolls past the first headline.\n *\n * @param el - Header title element\n * @param options - Options\n *\n * @returns Header title component observable\n */\nexport function mountHeaderTitle(\n  el: HTMLElement, options: MountOptions\n): Observable<Component<HeaderTitle>> {\n  return defer(() => {\n    const push$ = new Subject<HeaderTitle>()\n    push$.subscribe(({ active }) => {\n      el.classList.toggle(\"md-header__title--active\", active)\n    })\n\n    /* Obtain headline, if any */\n    const heading = getOptionalElement(\"article h1\")\n    if (typeof heading === \"undefined\")\n      return EMPTY\n\n    /* Create and return component */\n    return watchHeaderTitle(heading, options)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  combineLatest,\n  distinctUntilChanged,\n  distinctUntilKeyChanged,\n  map,\n  switchMap\n} from \"rxjs\"\n\nimport {\n  Viewport,\n  watchElementSize\n} from \"~/browser\"\n\nimport { Header } from \"../header\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Main area\n */\nexport interface Main {\n  offset: number                       /* Main area top offset */\n  height: number                       /* Main area visible height */\n  active: boolean                      /* Main area is active */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch main area\n *\n * This function returns an observable that computes the visual parameters of\n * the main area which depends on the viewport vertical offset and height, as\n * well as the height of the header element, if the header is fixed.\n *\n * @param el - Main area element\n * @param options - Options\n *\n * @returns Main area observable\n */\nexport function watchMain(\n  el: HTMLElement, { viewport$, header$ }: WatchOptions\n): Observable<Main> {\n\n  /* Compute necessary adjustment for header */\n  const adjust$ = header$\n    .pipe(\n      map(({ height }) => height),\n      distinctUntilChanged()\n    )\n\n  /* Compute the main area's top and bottom borders */\n  const border$ = adjust$\n    .pipe(\n      switchMap(() => watchElementSize(el)\n        .pipe(\n          map(({ height }) => ({\n            top:    el.offsetTop,\n            bottom: el.offsetTop + height\n          })),\n          distinctUntilKeyChanged(\"bottom\")\n        )\n      )\n    )\n\n  /* Compute the main area's offset, visible height and if we scrolled past */\n  return combineLatest([adjust$, border$, viewport$])\n    .pipe(\n      map(([header, { top, bottom }, { offset: { y }, size: { height } }]) => {\n        height = Math.max(0, height\n          - Math.max(0, top    - y,  header)\n          - Math.max(0, height + y - bottom)\n        )\n        return {\n          offset: top - header,\n          height,\n          active: top - header <= y\n        }\n      }),\n      distinctUntilChanged((a, b) => (\n        a.offset === b.offset &&\n        a.height === b.height &&\n        a.active === b.active\n      ))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  asyncScheduler,\n  defer,\n  finalize,\n  fromEvent,\n  map,\n  mergeMap,\n  observeOn,\n  of,\n  shareReplay,\n  startWith,\n  tap\n} from \"rxjs\"\n\nimport { getElements } from \"~/browser\"\n\nimport { Component } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Palette colors\n */\nexport interface PaletteColor {\n  scheme?: string                      /* Color scheme */\n  primary?: string                     /* Primary color */\n  accent?: string                      /* Accent color */\n}\n\n/**\n * Palette\n */\nexport interface Palette {\n  index: number                        /* Palette index */\n  color: PaletteColor                  /* Palette colors */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch color palette\n *\n * @param inputs - Color palette element\n *\n * @returns Color palette observable\n */\nexport function watchPalette(\n  inputs: HTMLInputElement[]\n): Observable<Palette> {\n  const current = __md_get<Palette>(\"__palette\") || {\n    index: inputs.findIndex(input => matchMedia(\n      input.getAttribute(\"data-md-color-media\")!\n    ).matches)\n  }\n\n  /* Emit changes in color palette */\n  return of(...inputs)\n    .pipe(\n      mergeMap(input => fromEvent(input, \"change\")\n        .pipe(\n          map(() => input)\n        )\n      ),\n      startWith(inputs[Math.max(0, current.index)]),\n      map(input => ({\n        index: inputs.indexOf(input),\n        color: {\n          scheme:  input.getAttribute(\"data-md-color-scheme\"),\n          primary: input.getAttribute(\"data-md-color-primary\"),\n          accent:  input.getAttribute(\"data-md-color-accent\")\n        }\n      } as Palette)),\n      shareReplay(1)\n    )\n}\n\n/**\n * Mount color palette\n *\n * @param el - Color palette element\n *\n * @returns Color palette component observable\n */\nexport function mountPalette(\n  el: HTMLElement\n): Observable<Component<Palette>> {\n  return defer(() => {\n    const push$ = new Subject<Palette>()\n    push$.subscribe(palette => {\n      document.body.setAttribute(\"data-md-color-switching\", \"\")\n\n      /* Set color palette */\n      for (const [key, value] of Object.entries(palette.color))\n        document.body.setAttribute(`data-md-color-${key}`, value)\n\n      /* Toggle visibility */\n      for (let index = 0; index < inputs.length; index++) {\n        const label = inputs[index].nextElementSibling\n        if (label instanceof HTMLElement)\n          label.hidden = palette.index !== index\n      }\n\n      /* Persist preference in local storage */\n      __md_set(\"__palette\", palette)\n    })\n\n    /* Revert transition durations after color switch */\n    push$.pipe(observeOn(asyncScheduler))\n      .subscribe(() => {\n        document.body.removeAttribute(\"data-md-color-switching\")\n      })\n\n    /* Create and return component */\n    const inputs = getElements<HTMLInputElement>(\"input\", el)\n    return watchPalette(inputs)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport ClipboardJS from \"clipboard\"\nimport {\n  Observable,\n  Subject,\n  map,\n  tap\n} from \"rxjs\"\n\nimport { translation } from \"~/_\"\nimport { getElement } from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Setup options\n */\ninterface SetupOptions {\n  alert$: Subject<string>              /* Alert subject */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Extract text to copy\n *\n * @param el - HTML element\n *\n * @returns Extracted text\n */\nfunction extract(el: HTMLElement): string {\n  el.setAttribute(\"data-md-copying\", \"\")\n  const text = el.innerText\n  el.removeAttribute(\"data-md-copying\")\n  return text\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Set up Clipboard.js integration\n *\n * @param options - Options\n */\nexport function setupClipboardJS(\n  { alert$ }: SetupOptions\n): void {\n  if (ClipboardJS.isSupported()) {\n    new Observable<ClipboardJS.Event>(subscriber => {\n      new ClipboardJS(\"[data-clipboard-target], [data-clipboard-text]\", {\n        text: el => (\n          el.getAttribute(\"data-clipboard-text\")! ||\n          extract(getElement(\n            el.getAttribute(\"data-clipboard-target\")!\n          ))\n        )\n      })\n        .on(\"success\", ev => subscriber.next(ev))\n    })\n      .pipe(\n        tap(ev => {\n          const trigger = ev.trigger as HTMLElement\n          trigger.focus()\n        }),\n        map(() => translation(\"clipboard.copied\"))\n      )\n        .subscribe(alert$)\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Observable,\n  catchError,\n  defaultIfEmpty,\n  map,\n  of,\n  tap\n} from \"rxjs\"\n\nimport { configuration } from \"~/_\"\nimport { getElements, requestXML } from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Sitemap, i.e. a list of URLs\n */\nexport type Sitemap = string[]\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Preprocess a list of URLs\n *\n * This function replaces the `site_url` in the sitemap with the actual base\n * URL, to allow instant loading to work in occasions like Netlify previews.\n *\n * @param urls - URLs\n *\n * @returns URL path parts\n */\nfunction preprocess(urls: Sitemap): Sitemap {\n  if (urls.length < 2)\n    return [\"\"]\n\n  /* Take the first two URLs and remove everything after the last slash */\n  const [root, next] = [...urls]\n    .sort((a, b) => a.length - b.length)\n    .map(url => url.replace(/[^/]+$/, \"\"))\n\n  /* Compute common prefix */\n  let index = 0\n  if (root === next)\n    index = root.length\n  else\n    while (root.charCodeAt(index) === next.charCodeAt(index))\n      index++\n\n  /* Remove common prefix and return in original order */\n  return urls.map(url => url.replace(root.slice(0, index), \"\"))\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch the sitemap for the given base URL\n *\n * @param base - Base URL\n *\n * @returns Sitemap observable\n */\nexport function fetchSitemap(base?: URL): Observable<Sitemap> {\n  const cached = __md_get<Sitemap>(\"__sitemap\", sessionStorage, base)\n  if (cached) {\n    return of(cached)\n  } else {\n    const config = configuration()\n    return requestXML(new URL(\"sitemap.xml\", base || config.base))\n      .pipe(\n        map(sitemap => preprocess(getElements(\"loc\", sitemap)\n          .map(node => node.textContent!)\n        )),\n        catchError(() => EMPTY), // @todo refactor instant loading\n        defaultIfEmpty([]),\n        tap(sitemap => __md_set(\"__sitemap\", sitemap, sessionStorage, base))\n      )\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  NEVER,\n  Observable,\n  Subject,\n  bufferCount,\n  catchError,\n  concatMap,\n  debounceTime,\n  distinctUntilChanged,\n  distinctUntilKeyChanged,\n  filter,\n  fromEvent,\n  map,\n  merge,\n  of,\n  sample,\n  share,\n  skip,\n  skipUntil,\n  switchMap\n} from \"rxjs\"\n\nimport { configuration, feature } from \"~/_\"\nimport {\n  Viewport,\n  ViewportOffset,\n  getElements,\n  getOptionalElement,\n  request,\n  setLocation,\n  setLocationHash\n} from \"~/browser\"\nimport { getComponentElement } from \"~/components\"\nimport { h } from \"~/utilities\"\n\nimport { fetchSitemap } from \"../sitemap\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * History state\n */\nexport interface HistoryState {\n  url: URL                             /* State URL */\n  offset?: ViewportOffset              /* State viewport offset */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Setup options\n */\ninterface SetupOptions {\n  document$: Subject<Document>         /* Document subject */\n  location$: Subject<URL>              /* Location subject */\n  viewport$: Observable<Viewport>      /* Viewport observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Set up instant loading\n *\n * When fetching, theoretically, we could use `responseType: \"document\"`, but\n * since all MkDocs links are relative, we need to make sure that the current\n * location matches the document we just loaded. Otherwise any relative links\n * in the document could use the old location.\n *\n * This is the reason why we need to synchronize history events and the process\n * of fetching the document for navigation changes (except `popstate` events):\n *\n * 1. Fetch document via `XMLHTTPRequest`\n * 2. Set new location via `history.pushState`\n * 3. Parse and emit fetched document\n *\n * For `popstate` events, we must not use `history.pushState`, or the forward\n * history will be irreversibly overwritten. In case the request fails, the\n * location change is dispatched regularly.\n *\n * @param options - Options\n */\nexport function setupInstantLoading(\n  { document$, location$, viewport$ }: SetupOptions\n): void {\n  const config = configuration()\n  if (location.protocol === \"file:\")\n    return\n\n  /* Disable automatic scroll restoration */\n  if (\"scrollRestoration\" in history) {\n    history.scrollRestoration = \"manual\"\n\n    /* Hack: ensure that reloads restore viewport offset */\n    fromEvent(window, \"beforeunload\")\n      .subscribe(() => {\n        history.scrollRestoration = \"auto\"\n      })\n  }\n\n  /* Hack: ensure absolute favicon link to omit 404s when switching */\n  const favicon = getOptionalElement<HTMLLinkElement>(\"link[rel=icon]\")\n  if (typeof favicon !== \"undefined\")\n    favicon.href = favicon.href\n\n  /* Intercept internal navigation */\n  const push$ = fetchSitemap()\n    .pipe(\n      map(paths => paths.map(path => `${new URL(path, config.base)}`)),\n      switchMap(urls => fromEvent<MouseEvent>(document.body, \"click\")\n        .pipe(\n          filter(ev => !ev.metaKey && !ev.ctrlKey),\n          switchMap(ev => {\n            if (ev.target instanceof Element) {\n              const el = ev.target.closest(\"a\")\n              if (el && !el.target) {\n                const url = new URL(el.href)\n\n                /* Canonicalize URL */\n                url.search = \"\"\n                url.hash = \"\"\n\n                /* Check if URL should be intercepted */\n                if (\n                  url.pathname !== location.pathname &&\n                  urls.includes(url.toString())\n                ) {\n                  ev.preventDefault()\n                  return of({\n                    url: new URL(el.href)\n                  })\n                }\n              }\n            }\n            return NEVER\n          })\n        )\n      ),\n      share<HistoryState>()\n    )\n\n  /* Intercept history back and forward */\n  const pop$ = fromEvent<PopStateEvent>(window, \"popstate\")\n    .pipe(\n      filter(ev => ev.state !== null),\n      map(ev => ({\n        url: new URL(location.href),\n        offset: ev.state\n      })),\n      share<HistoryState>()\n    )\n\n  /* Emit location change */\n  merge(push$, pop$)\n    .pipe(\n      distinctUntilChanged((a, b) => a.url.href === b.url.href),\n      map(({ url }) => url)\n    )\n      .subscribe(location$)\n\n  /* Fetch document via `XMLHTTPRequest` */\n  const response$ = location$\n    .pipe(\n      distinctUntilKeyChanged(\"pathname\"),\n      switchMap(url => request(url.href)\n        .pipe(\n          catchError(() => {\n            setLocation(url)\n            return NEVER\n          })\n        )\n      ),\n      share()\n    )\n\n  /* Set new location via `history.pushState` */\n  push$\n    .pipe(\n      sample(response$)\n    )\n      .subscribe(({ url }) => {\n        history.pushState({}, \"\", `${url}`)\n      })\n\n  /* Parse and emit fetched document */\n  const dom = new DOMParser()\n  response$\n    .pipe(\n      switchMap(res => res.text()),\n      map(res => dom.parseFromString(res, \"text/html\"))\n    )\n      .subscribe(document$)\n\n  /* Replace meta tags and components */\n  document$\n    .pipe(\n      skip(1)\n    )\n      .subscribe(replacement => {\n        for (const selector of [\n\n          /* Meta tags */\n          \"title\",\n          \"link[rel=canonical]\",\n          \"meta[name=author]\",\n          \"meta[name=description]\",\n\n          /* Components */\n          \"[data-md-component=announce]\",\n          \"[data-md-component=container]\",\n          \"[data-md-component=header-topic]\",\n          \"[data-md-component=outdated]\",\n          \"[data-md-component=logo]\",\n          \"[data-md-component=skip]\",\n          ...feature(\"navigation.tabs.sticky\")\n            ? [\"[data-md-component=tabs]\"]\n            : []\n        ]) {\n          const source = getOptionalElement(selector)\n          const target = getOptionalElement(selector, replacement)\n          if (\n            typeof source !== \"undefined\" &&\n            typeof target !== \"undefined\"\n          ) {\n            source.replaceWith(target)\n          }\n        }\n      })\n\n  /* Re-evaluate scripts */\n  document$\n    .pipe(\n      skip(1),\n      map(() => getComponentElement(\"container\")),\n      switchMap(el => getElements(\"script\", el)),\n      concatMap(el => {\n        const script = h(\"script\")\n        if (el.src) {\n          for (const name of el.getAttributeNames())\n            script.setAttribute(name, el.getAttribute(name)!)\n          el.replaceWith(script)\n\n          /* Complete when script is loaded */\n          return new Observable(observer => {\n            script.onload = () => observer.complete()\n          })\n\n        /* Complete immediately */\n        } else {\n          script.textContent = el.textContent\n          el.replaceWith(script)\n          return EMPTY\n        }\n      })\n    )\n      .subscribe()\n\n  /* Emit history state change */\n  merge(push$, pop$)\n    .pipe(\n      sample(document$)\n    )\n      .subscribe(({ url, offset }) => {\n        if (url.hash && !offset) {\n          setLocationHash(url.hash)\n        } else {\n          window.scrollTo(0, offset?.y || 0)\n        }\n      })\n\n  /* Debounce update of viewport offset */\n  viewport$\n    .pipe(\n      skipUntil(push$),\n      debounceTime(250),\n      distinctUntilKeyChanged(\"offset\")\n    )\n      .subscribe(({ offset }) => {\n        history.replaceState(offset, \"\")\n      })\n\n  /* Set viewport offset from history */\n  merge(push$, pop$)\n    .pipe(\n      bufferCount(2, 1),\n      filter(([a, b]) => a.url.pathname === b.url.pathname),\n      map(([, state]) => state)\n    )\n      .subscribe(({ offset }) => {\n        window.scrollTo(0, offset?.y || 0)\n      })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport escapeHTML from \"escape-html\"\n\nimport { SearchIndexDocument } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search document\n */\nexport interface SearchDocument extends SearchIndexDocument {\n  parent?: SearchIndexDocument         /* Parent article */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Search document mapping\n */\nexport type SearchDocumentMap = Map<string, SearchDocument>\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Create a search document mapping\n *\n * @param docs - Search index documents\n *\n * @returns Search document map\n */\nexport function setupSearchDocumentMap(\n  docs: SearchIndexDocument[]\n): SearchDocumentMap {\n  const documents = new Map<string, SearchDocument>()\n  const parents   = new Set<SearchDocument>()\n  for (const doc of docs) {\n    const [path, hash] = doc.location.split(\"#\")\n\n    /* Extract location, title and tags */\n    const location = doc.location\n    const title    = doc.title\n    const tags     = doc.tags\n\n    /* Escape and cleanup text */\n    const text = escapeHTML(doc.text)\n      .replace(/\\s+(?=[,.:;!?])/g, \"\")\n      .replace(/\\s+/g, \" \")\n\n    /* Handle section */\n    if (hash) {\n      const parent = documents.get(path)!\n\n      /* Ignore first section, override article */\n      if (!parents.has(parent)) {\n        parent.title = doc.title\n        parent.text  = text\n\n        /* Remember that we processed the article */\n        parents.add(parent)\n\n      /* Add subsequent section */\n      } else {\n        documents.set(location, {\n          location,\n          title,\n          text,\n          parent\n        })\n      }\n\n    /* Add article */\n    } else {\n      documents.set(location, {\n        location,\n        title,\n        text,\n        ...tags && { tags }\n      })\n    }\n  }\n  return documents\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport escapeHTML from \"escape-html\"\n\nimport { SearchIndexConfig } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search highlight function\n *\n * @param value - Value\n *\n * @returns Highlighted value\n */\nexport type SearchHighlightFn = (value: string) => string\n\n/**\n * Search highlight factory function\n *\n * @param query - Query value\n *\n * @returns Search highlight function\n */\nexport type SearchHighlightFactoryFn = (query: string) => SearchHighlightFn\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Create a search highlighter\n *\n * @param config - Search index configuration\n * @param escape - Whether to escape HTML\n *\n * @returns Search highlight factory function\n */\nexport function setupSearchHighlighter(\n  config: SearchIndexConfig, escape: boolean\n): SearchHighlightFactoryFn {\n  const separator = new RegExp(config.separator, \"img\")\n  const highlight = (_: unknown, data: string, term: string) => {\n    return `${data}<mark data-md-highlight>${term}</mark>`\n  }\n\n  /* Return factory function */\n  return (query: string) => {\n    query = query\n      .replace(/[\\s*+\\-:~^]+/g, \" \")\n      .trim()\n\n    /* Create search term match expression */\n    const match = new RegExp(`(^|${config.separator})(${\n      query\n        .replace(/[|\\\\{}()[\\]^$+*?.-]/g, \"\\\\$&\")\n        .replace(separator, \"|\")\n    })`, \"img\")\n\n    /* Highlight string value */\n    return value => (\n      escape\n        ? escapeHTML(value)\n        : value\n      )\n        .replace(match, highlight)\n        .replace(/<\\/mark>(\\s+)<mark[^>]*>/img, \"$1\")\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search transformation function\n *\n * @param value - Query value\n *\n * @returns Transformed query value\n */\nexport type SearchTransformFn = (value: string) => string\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Default transformation function\n *\n * 1. Search for terms in quotation marks and prepend a `+` modifier to denote\n *    that the resulting document must contain all terms, converting the query\n *    to an `AND` query (as opposed to the default `OR` behavior). While users\n *    may expect terms enclosed in quotation marks to map to span queries, i.e.\n *    for which order is important, Lunr.js doesn't support them, so the best\n *    we can do is to convert the terms to an `AND` query.\n *\n * 2. Replace control characters which are not located at the beginning of the\n *    query or preceded by white space, or are not followed by a non-whitespace\n *    character or are at the end of the query string. Furthermore, filter\n *    unmatched quotation marks.\n *\n * 3. Trim excess whitespace from left and right.\n *\n * @param query - Query value\n *\n * @returns Transformed query value\n */\nexport function defaultTransform(query: string): string {\n  return query\n    .split(/\"([^\"]+)\"/g)                            /* => 1 */\n      .map((terms, index) => index & 1\n        ? terms.replace(/^\\b|^(?![^\\x00-\\x7F]|$)|\\s+/g, \" +\")\n        : terms\n      )\n      .join(\"\")\n    .replace(/\"|(?:^|\\s+)[*+\\-:^~]+(?=\\s+|$)/g, \"\") /* => 2 */\n    .trim()                                         /* => 3 */\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A RTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { SearchIndex, SearchResult } from \"../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search message type\n */\nexport const enum SearchMessageType {\n  SETUP,                               /* Search index setup */\n  READY,                               /* Search index ready */\n  QUERY,                               /* Search query */\n  RESULT                               /* Search results */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Message containing the data necessary to setup the search index\n */\nexport interface SearchSetupMessage {\n  type: SearchMessageType.SETUP        /* Message type */\n  data: SearchIndex                    /* Message data */\n}\n\n/**\n * Message indicating the search index is ready\n */\nexport interface SearchReadyMessage {\n  type: SearchMessageType.READY        /* Message type */\n}\n\n/**\n * Message containing a search query\n */\nexport interface SearchQueryMessage {\n  type: SearchMessageType.QUERY        /* Message type */\n  data: string                         /* Message data */\n}\n\n/**\n * Message containing results for a search query\n */\nexport interface SearchResultMessage {\n  type: SearchMessageType.RESULT       /* Message type */\n  data: SearchResult                   /* Message data */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Message exchanged with the search worker\n */\nexport type SearchMessage =\n  | SearchSetupMessage\n  | SearchReadyMessage\n  | SearchQueryMessage\n  | SearchResultMessage\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Type guard for search setup messages\n *\n * @param message - Search worker message\n *\n * @returns Test result\n */\nexport function isSearchSetupMessage(\n  message: SearchMessage\n): message is SearchSetupMessage {\n  return message.type === SearchMessageType.SETUP\n}\n\n/**\n * Type guard for search ready messages\n *\n * @param message - Search worker message\n *\n * @returns Test result\n */\nexport function isSearchReadyMessage(\n  message: SearchMessage\n): message is SearchReadyMessage {\n  return message.type === SearchMessageType.READY\n}\n\n/**\n * Type guard for search query messages\n *\n * @param message - Search worker message\n *\n * @returns Test result\n */\nexport function isSearchQueryMessage(\n  message: SearchMessage\n): message is SearchQueryMessage {\n  return message.type === SearchMessageType.QUERY\n}\n\n/**\n * Type guard for search result messages\n *\n * @param message - Search worker message\n *\n * @returns Test result\n */\nexport function isSearchResultMessage(\n  message: SearchMessage\n): message is SearchResultMessage {\n  return message.type === SearchMessageType.RESULT\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A RTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  ObservableInput,\n  Subject,\n  from,\n  map,\n  share\n} from \"rxjs\"\n\nimport { configuration, feature, translation } from \"~/_\"\nimport { WorkerHandler, watchWorker } from \"~/browser\"\n\nimport { SearchIndex } from \"../../_\"\nimport {\n  SearchOptions,\n  SearchPipeline\n} from \"../../options\"\nimport {\n  SearchMessage,\n  SearchMessageType,\n  SearchSetupMessage,\n  isSearchResultMessage\n} from \"../message\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search worker\n */\nexport type SearchWorker = WorkerHandler<SearchMessage>\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Set up search index\n *\n * @param data - Search index\n *\n * @returns Search index\n */\nfunction setupSearchIndex({ config, docs }: SearchIndex): SearchIndex {\n\n  /* Override default language with value from translation */\n  if (config.lang.length === 1 && config.lang[0] === \"en\")\n    config.lang = [\n      translation(\"search.config.lang\")\n    ]\n\n  /* Override default separator with value from translation */\n  if (config.separator === \"[\\\\s\\\\-]+\")\n    config.separator = translation(\"search.config.separator\")\n\n  /* Set pipeline from translation */\n  const pipeline = translation(\"search.config.pipeline\")\n    .split(/\\s*,\\s*/)\n    .filter(Boolean) as SearchPipeline\n\n  /* Determine search options */\n  const options: SearchOptions = {\n    pipeline,\n    suggestions: feature(\"search.suggest\")\n  }\n\n  /* Return search index after defaulting */\n  return { config, docs, options }\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Set up search worker\n *\n * This function creates a web worker to set up and query the search index,\n * which is done using Lunr.js. The index must be passed as an observable to\n * enable hacks like _localsearch_ via search index embedding as JSON.\n *\n * @param url - Worker URL\n * @param index - Search index observable input\n *\n * @returns Search worker\n */\nexport function setupSearchWorker(\n  url: string, index: ObservableInput<SearchIndex>\n): SearchWorker {\n  const config = configuration()\n  const worker = new Worker(url)\n\n  /* Create communication channels and resolve relative links */\n  const tx$ = new Subject<SearchMessage>()\n  const rx$ = watchWorker(worker, { tx$ })\n    .pipe(\n      map(message => {\n        if (isSearchResultMessage(message)) {\n          for (const result of message.data.items)\n            for (const document of result)\n              document.location = `${new URL(document.location, config.base)}`\n        }\n        return message\n      }),\n      share()\n    )\n\n  /* Set up search index */\n  from(index)\n    .pipe(\n      map(data => ({\n        type: SearchMessageType.SETUP,\n        data: setupSearchIndex(data)\n      } as SearchSetupMessage))\n    )\n      .subscribe(tx$.next.bind(tx$))\n\n  /* Return search worker */\n  return { tx$, rx$ }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Subject,\n  catchError,\n  combineLatest,\n  filter,\n  fromEvent,\n  map,\n  of,\n  switchMap,\n  withLatestFrom\n} from \"rxjs\"\n\nimport { configuration } from \"~/_\"\nimport {\n  getElement,\n  getLocation,\n  requestJSON,\n  setLocation\n} from \"~/browser\"\nimport { getComponentElements } from \"~/components\"\nimport {\n  Version,\n  renderVersionSelector\n} from \"~/templates\"\n\nimport { fetchSitemap } from \"../sitemap\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Setup options\n */\ninterface SetupOptions {\n  document$: Subject<Document>         /* Document subject */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Set up version selector\n *\n * @param options - Options\n */\nexport function setupVersionSelector(\n  { document$ }: SetupOptions\n): void {\n  const config = configuration()\n  const versions$ = requestJSON<Version[]>(\n    new URL(\"../versions.json\", config.base)\n  )\n    .pipe(\n      catchError(() => EMPTY) // @todo refactor instant loading\n    )\n\n  /* Determine current version */\n  const current$ = versions$\n    .pipe(\n      map(versions => {\n        const [, current] = config.base.match(/([^/]+)\\/?$/)!\n        return versions.find(({ version, aliases }) => (\n          version === current || aliases.includes(current)\n        )) || versions[0]\n      })\n    )\n\n  /* Intercept inter-version navigation */\n  versions$\n    .pipe(\n      map(versions => new Map(versions.map(version => [\n        `${new URL(`../${version.version}/`, config.base)}`,\n        version\n      ]))),\n      switchMap(urls => fromEvent<MouseEvent>(document.body, \"click\")\n        .pipe(\n          filter(ev => !ev.metaKey && !ev.ctrlKey),\n          withLatestFrom(current$),\n          switchMap(([ev, current]) => {\n            if (ev.target instanceof Element) {\n              const el = ev.target.closest(\"a\")\n              if (el && !el.target && urls.has(el.href)) {\n                const url = el.href\n                // This is a temporary hack to detect if a version inside the\n                // version selector or on another part of the site was clicked.\n                // If we're inside the version selector, we definitely want to\n                // find the same page, as we might have different deployments\n                // due to aliases. However, if we're outside the version\n                // selector, we must abort here, because we might otherwise\n                // interfere with instant loading. We need to refactor this\n                // at some point together with instant loading.\n                //\n                // See https://github.com/squidfunk/mkdocs-material/issues/4012\n                if (!ev.target.closest(\".md-version\")) {\n                  const version = urls.get(url)!\n                  if (version === current)\n                    return EMPTY\n                }\n                ev.preventDefault()\n                return of(url)\n              }\n            }\n            return EMPTY\n          }),\n          switchMap(url => {\n            const { version } = urls.get(url)!\n            return fetchSitemap(new URL(url))\n              .pipe(\n                map(sitemap => {\n                  const location = getLocation()\n                  const path = location.href.replace(config.base, \"\")\n                  return sitemap.includes(path)\n                    ? new URL(`../${version}/${path}`, config.base)\n                    : new URL(url)\n                })\n              )\n          })\n        )\n      )\n    )\n      .subscribe(url => setLocation(url))\n\n  /* Render version selector and warning */\n  combineLatest([versions$, current$])\n    .subscribe(([versions, current]) => {\n      const topic = getElement(\".md-header__topic\")\n      topic.appendChild(renderVersionSelector(versions, current))\n    })\n\n  /* Integrate outdated version banner with instant loading */\n  document$.pipe(switchMap(() => current$))\n    .subscribe(current => {\n\n      /* Check if version state was already determined */\n      let outdated = __md_get(\"__outdated\", sessionStorage)\n      if (outdated === null) {\n        const latest = config.version?.default || \"latest\"\n        outdated = !current.aliases.includes(latest)\n\n        /* Persist version state in session storage */\n        __md_set(\"__outdated\", outdated, sessionStorage)\n      }\n\n      /* Unhide outdated version banner */\n      if (outdated)\n        for (const warning of getComponentElements(\"outdated\"))\n          warning.hidden = false\n    })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  combineLatest,\n  delay,\n  distinctUntilChanged,\n  distinctUntilKeyChanged,\n  filter,\n  finalize,\n  fromEvent,\n  map,\n  merge,\n  share,\n  shareReplay,\n  startWith,\n  take,\n  takeLast,\n  takeUntil,\n  tap\n} from \"rxjs\"\n\nimport { translation } from \"~/_\"\nimport {\n  getLocation,\n  setToggle,\n  watchElementFocus,\n  watchToggle\n} from \"~/browser\"\nimport {\n  SearchMessageType,\n  SearchQueryMessage,\n  SearchWorker,\n  defaultTransform,\n  isSearchReadyMessage\n} from \"~/integrations\"\n\nimport { Component } from \"../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search query\n */\nexport interface SearchQuery {\n  value: string                        /* Query value */\n  focus: boolean                       /* Query focus */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch search query\n *\n * Note that the focus event which triggers re-reading the current query value\n * is delayed by `1ms` so the input's empty state is allowed to propagate.\n *\n * @param el - Search query element\n * @param worker - Search worker\n *\n * @returns Search query observable\n */\nexport function watchSearchQuery(\n  el: HTMLInputElement, { rx$ }: SearchWorker\n): Observable<SearchQuery> {\n  const fn = __search?.transform || defaultTransform\n\n  /* Immediately show search dialog */\n  const { searchParams } = getLocation()\n  if (searchParams.has(\"q\"))\n    setToggle(\"search\", true)\n\n  /* Intercept query parameter (deep link) */\n  const param$ = rx$\n    .pipe(\n      filter(isSearchReadyMessage),\n      take(1),\n      map(() => searchParams.get(\"q\") || \"\")\n    )\n\n  /* Remove query parameter when search is closed */\n  watchToggle(\"search\")\n    .pipe(\n      filter(active => !active),\n      take(1)\n    )\n      .subscribe(() => {\n        const url = new URL(location.href)\n        url.searchParams.delete(\"q\")\n        history.replaceState({}, \"\", `${url}`)\n      })\n\n  /* Set query from parameter */\n  param$.subscribe(value => { // TODO: not ideal - find a better way\n    if (value) {\n      el.value = value\n      el.focus()\n    }\n  })\n\n  /* Intercept focus and input events */\n  const focus$ = watchElementFocus(el)\n  const value$ = merge(\n    fromEvent(el, \"keyup\"),\n    fromEvent(el, \"focus\").pipe(delay(1)),\n    param$\n  )\n    .pipe(\n      map(() => fn(el.value)),\n      startWith(\"\"),\n      distinctUntilChanged(),\n    )\n\n  /* Combine into single observable */\n  return combineLatest([value$, focus$])\n    .pipe(\n      map(([value, focus]) => ({ value, focus })),\n      shareReplay(1)\n    )\n}\n\n/**\n * Mount search query\n *\n * @param el - Search query element\n * @param worker - Search worker\n *\n * @returns Search query component observable\n */\nexport function mountSearchQuery(\n  el: HTMLInputElement, { tx$, rx$ }: SearchWorker\n): Observable<Component<SearchQuery, HTMLInputElement>> {\n  const push$ = new Subject<SearchQuery>()\n  const done$ = push$.pipe(takeLast(1))\n\n  /* Handle value changes */\n  push$\n    .pipe(\n      distinctUntilKeyChanged(\"value\"),\n      map(({ value }): SearchQueryMessage => ({\n        type: SearchMessageType.QUERY,\n        data: value\n      }))\n    )\n      .subscribe(tx$.next.bind(tx$))\n\n  /* Handle focus changes */\n  push$\n    .pipe(\n      distinctUntilKeyChanged(\"focus\")\n    )\n      .subscribe(({ focus }) => {\n        if (focus) {\n          setToggle(\"search\", focus)\n          el.placeholder = \"\"\n        } else {\n          el.placeholder = translation(\"search.placeholder\")\n        }\n      })\n\n  /* Handle reset */\n  fromEvent(el.form!, \"reset\")\n    .pipe(\n      takeUntil(done$)\n    )\n      .subscribe(() => el.focus())\n\n  /* Create and return component */\n  return watchSearchQuery(el, { tx$, rx$ })\n    .pipe(\n      tap(state => push$.next(state)),\n      finalize(() => push$.complete()),\n      map(state => ({ ref: el, ...state })),\n      share()\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  bufferCount,\n  filter,\n  finalize,\n  map,\n  merge,\n  of,\n  skipUntil,\n  switchMap,\n  take,\n  tap,\n  withLatestFrom,\n  zipWith\n} from \"rxjs\"\n\nimport { translation } from \"~/_\"\nimport {\n  getElement,\n  watchElementBoundary\n} from \"~/browser\"\nimport {\n  SearchResult,\n  SearchWorker,\n  isSearchReadyMessage,\n  isSearchResultMessage\n} from \"~/integrations\"\nimport { renderSearchResultItem } from \"~/templates\"\nimport { round } from \"~/utilities\"\n\nimport { Component } from \"../../_\"\nimport { SearchQuery } from \"../query\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  query$: Observable<SearchQuery>      /* Search query observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount search result list\n *\n * This function performs a lazy rendering of the search results, depending on\n * the vertical offset of the search result container.\n *\n * @param el - Search result list element\n * @param worker - Search worker\n * @param options - Options\n *\n * @returns Search result list component observable\n */\nexport function mountSearchResult(\n  el: HTMLElement, { rx$ }: SearchWorker, { query$ }: MountOptions\n): Observable<Component<SearchResult>> {\n  const push$ = new Subject<SearchResult>()\n  const boundary$ = watchElementBoundary(el.parentElement!)\n    .pipe(\n      filter(Boolean)\n    )\n\n  /* Retrieve nested components */\n  const meta = getElement(\":scope > :first-child\", el)\n  const list = getElement(\":scope > :last-child\", el)\n\n  /* Wait until search is ready */\n  const ready$ = rx$\n    .pipe(\n      filter(isSearchReadyMessage),\n      take(1)\n    )\n\n  /* Update search result metadata */\n  push$\n    .pipe(\n      withLatestFrom(query$),\n      skipUntil(ready$)\n    )\n      .subscribe(([{ items }, { value }]) => {\n        if (value) {\n          switch (items.length) {\n\n            /* No results */\n            case 0:\n              meta.textContent = translation(\"search.result.none\")\n              break\n\n            /* One result */\n            case 1:\n              meta.textContent = translation(\"search.result.one\")\n              break\n\n            /* Multiple result */\n            default:\n              meta.textContent = translation(\n                \"search.result.other\",\n                round(items.length)\n              )\n          }\n        } else {\n          meta.textContent = translation(\"search.result.placeholder\")\n        }\n      })\n\n  /* Update search result list */\n  push$\n    .pipe(\n      tap(() => list.innerHTML = \"\"),\n      switchMap(({ items }) => merge(\n        of(...items.slice(0, 10)),\n        of(...items.slice(10))\n          .pipe(\n            bufferCount(4),\n            zipWith(boundary$),\n            switchMap(([chunk]) => chunk)\n          )\n      ))\n    )\n      .subscribe(result => list.appendChild(\n        renderSearchResultItem(result)\n      ))\n\n  /* Filter search result message */\n  const result$ = rx$\n    .pipe(\n      filter(isSearchResultMessage),\n      map(({ data }) => data)\n    )\n\n  /* Create and return component */\n  return result$\n    .pipe(\n      tap(state => push$.next(state)),\n      finalize(() => push$.complete()),\n      map(state => ({ ref: el, ...state }))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  finalize,\n  fromEvent,\n  map,\n  tap\n} from \"rxjs\"\n\nimport { getLocation } from \"~/browser\"\n\nimport { Component } from \"../../_\"\nimport { SearchQuery } from \"../query\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search sharing\n */\nexport interface SearchShare {\n  url: URL                             /* Deep link for sharing */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  query$: Observable<SearchQuery>      /* Search query observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  query$: Observable<SearchQuery>      /* Search query observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount search sharing\n *\n * @param _el - Search sharing element\n * @param options - Options\n *\n * @returns Search sharing observable\n */\nexport function watchSearchShare(\n  _el: HTMLElement, { query$ }: WatchOptions\n): Observable<SearchShare> {\n  return query$\n    .pipe(\n      map(({ value }) => {\n        const url = getLocation()\n        url.hash = \"\"\n        url.searchParams.delete(\"h\")\n        url.searchParams.set(\"q\", value)\n        return { url }\n      })\n    )\n}\n\n/**\n * Mount search sharing\n *\n * @param el - Search sharing element\n * @param options - Options\n *\n * @returns Search sharing component observable\n */\nexport function mountSearchShare(\n  el: HTMLAnchorElement, options: MountOptions\n): Observable<Component<SearchShare>> {\n  const push$ = new Subject<SearchShare>()\n  push$.subscribe(({ url }) => {\n    el.setAttribute(\"data-clipboard-text\", el.href)\n    el.href = `${url}`\n  })\n\n  /* Prevent following of link */\n  fromEvent(el, \"click\")\n    .subscribe(ev => ev.preventDefault())\n\n  /* Create and return component */\n  return watchSearchShare(el, options)\n    .pipe(\n      tap(state => push$.next(state)),\n      finalize(() => push$.complete()),\n      map(state => ({ ref: el, ...state }))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  asyncScheduler,\n  combineLatestWith,\n  distinctUntilChanged,\n  filter,\n  finalize,\n  fromEvent,\n  map,\n  merge,\n  observeOn,\n  tap\n} from \"rxjs\"\n\nimport { Keyboard } from \"~/browser\"\nimport {\n  SearchResult,\n  SearchWorker,\n  isSearchResultMessage\n} from \"~/integrations\"\n\nimport { Component, getComponentElement } from \"../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search suggestions\n */\nexport interface SearchSuggest {}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  keyboard$: Observable<Keyboard>      /* Keyboard observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount search suggestions\n *\n * This function will perform a lazy rendering of the search results, depending\n * on the vertical offset of the search result container.\n *\n * @param el - Search result list element\n * @param worker - Search worker\n * @param options - Options\n *\n * @returns Search result list component observable\n */\nexport function mountSearchSuggest(\n  el: HTMLElement, { rx$ }: SearchWorker, { keyboard$ }: MountOptions\n): Observable<Component<SearchSuggest>> {\n  const push$ = new Subject<SearchResult>()\n\n  /* Retrieve query component and track all changes */\n  const query  = getComponentElement(\"search-query\")\n  const query$ = merge(\n    fromEvent(query, \"keydown\"),\n    fromEvent(query, \"focus\")\n  )\n    .pipe(\n      observeOn(asyncScheduler),\n      map(() => query.value),\n      distinctUntilChanged(),\n    )\n\n  /* Update search suggestions */\n  push$\n    .pipe(\n      combineLatestWith(query$),\n      map(([{ suggestions }, value]) => {\n        const words = value.split(/([\\s-]+)/)\n        if (suggestions?.length && words[words.length - 1]) {\n          const last = suggestions[suggestions.length - 1]\n          if (last.startsWith(words[words.length - 1]))\n            words[words.length - 1] = last\n        } else {\n          words.length = 0\n        }\n        return words\n      })\n    )\n      .subscribe(words => el.innerHTML = words\n        .join(\"\")\n        .replace(/\\s/g, \"&nbsp;\")\n      )\n\n  /* Set up search keyboard handlers */\n  keyboard$\n    .pipe(\n      filter(({ mode }) => mode === \"search\")\n    )\n      .subscribe(key => {\n        switch (key.type) {\n\n          /* Right arrow: accept current suggestion */\n          case \"ArrowRight\":\n            if (\n              el.innerText.length &&\n              query.selectionStart === query.value.length\n            )\n              query.value = el.innerText\n            break\n        }\n      })\n\n  /* Filter search result message */\n  const result$ = rx$\n    .pipe(\n      filter(isSearchResultMessage),\n      map(({ data }) => data)\n    )\n\n  /* Create and return component */\n  return result$\n    .pipe(\n      tap(state => push$.next(state)),\n      finalize(() => push$.complete()),\n      map(() => ({ ref: el }))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  NEVER,\n  Observable,\n  ObservableInput,\n  filter,\n  merge,\n  mergeWith,\n  sample,\n  take\n} from \"rxjs\"\n\nimport { configuration } from \"~/_\"\nimport {\n  Keyboard,\n  getActiveElement,\n  getElements,\n  setToggle\n} from \"~/browser\"\nimport {\n  SearchIndex,\n  SearchResult,\n  isSearchQueryMessage,\n  isSearchReadyMessage,\n  setupSearchWorker\n} from \"~/integrations\"\n\nimport {\n  Component,\n  getComponentElement,\n  getComponentElements\n} from \"../../_\"\nimport {\n  SearchQuery,\n  mountSearchQuery\n} from \"../query\"\nimport { mountSearchResult } from \"../result\"\nimport {\n  SearchShare,\n  mountSearchShare\n} from \"../share\"\nimport {\n  SearchSuggest,\n  mountSearchSuggest\n} from \"../suggest\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search\n */\nexport type Search =\n  | SearchQuery\n  | SearchResult\n  | SearchShare\n  | SearchSuggest\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  index$: ObservableInput<SearchIndex> /* Search index observable */\n  keyboard$: Observable<Keyboard>      /* Keyboard observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount search\n *\n * This function sets up the search functionality, including the underlying\n * web worker and all keyboard bindings.\n *\n * @param el - Search element\n * @param options - Options\n *\n * @returns Search component observable\n */\nexport function mountSearch(\n  el: HTMLElement, { index$, keyboard$ }: MountOptions\n): Observable<Component<Search>> {\n  const config = configuration()\n  try {\n    const url = __search?.worker || config.search\n    const worker = setupSearchWorker(url, index$)\n\n    /* Retrieve query and result components */\n    const query  = getComponentElement(\"search-query\", el)\n    const result = getComponentElement(\"search-result\", el)\n\n    /* Re-emit query when search is ready */\n    const { tx$, rx$ } = worker\n    tx$\n      .pipe(\n        filter(isSearchQueryMessage),\n        sample(rx$.pipe(filter(isSearchReadyMessage))),\n        take(1)\n      )\n        .subscribe(tx$.next.bind(tx$))\n\n    /* Set up search keyboard handlers */\n    keyboard$\n      .pipe(\n        filter(({ mode }) => mode === \"search\")\n      )\n        .subscribe(key => {\n          const active = getActiveElement()\n          switch (key.type) {\n\n            /* Enter: go to first (best) result */\n            case \"Enter\":\n              if (active === query) {\n                const anchors = new Map<HTMLAnchorElement, number>()\n                for (const anchor of getElements<HTMLAnchorElement>(\n                  \":first-child [href]\", result\n                )) {\n                  const article = anchor.firstElementChild!\n                  anchors.set(anchor, parseFloat(\n                    article.getAttribute(\"data-md-score\")!\n                  ))\n                }\n\n                /* Go to result with highest score, if any */\n                if (anchors.size) {\n                  const [[best]] = [...anchors].sort(([, a], [, b]) => b - a)\n                  best.click()\n                }\n\n                /* Otherwise omit form submission */\n                key.claim()\n              }\n              break\n\n            /* Escape or Tab: close search */\n            case \"Escape\":\n            case \"Tab\":\n              setToggle(\"search\", false)\n              query.blur()\n              break\n\n            /* Vertical arrows: select previous or next search result */\n            case \"ArrowUp\":\n            case \"ArrowDown\":\n              if (typeof active === \"undefined\") {\n                query.focus()\n              } else {\n                const els = [query, ...getElements(\n                  \":not(details) > [href], summary, details[open] [href]\",\n                  result\n                )]\n                const i = Math.max(0, (\n                  Math.max(0, els.indexOf(active)) + els.length + (\n                    key.type === \"ArrowUp\" ? -1 : +1\n                  )\n                ) % els.length)\n                els[i].focus()\n              }\n\n              /* Prevent scrolling of page */\n              key.claim()\n              break\n\n            /* All other keys: hand to search query */\n            default:\n              if (query !== getActiveElement())\n                query.focus()\n          }\n        })\n\n    /* Set up global keyboard handlers */\n    keyboard$\n      .pipe(\n        filter(({ mode }) => mode === \"global\"),\n      )\n        .subscribe(key => {\n          switch (key.type) {\n\n            /* Open search and select query */\n            case \"f\":\n            case \"s\":\n            case \"/\":\n              query.focus()\n              query.select()\n\n              /* Prevent scrolling of page */\n              key.claim()\n              break\n          }\n        })\n\n    /* Create and return component */\n    const query$  = mountSearchQuery(query, worker)\n    const result$ = mountSearchResult(result, worker, { query$ })\n    return merge(query$, result$)\n      .pipe(\n        mergeWith(\n\n          /* Search sharing */\n          ...getComponentElements(\"search-share\", el)\n            .map(child => mountSearchShare(child, { query$ })),\n\n          /* Search suggestions */\n          ...getComponentElements(\"search-suggest\", el)\n            .map(child => mountSearchSuggest(child, worker, { keyboard$ }))\n        )\n      )\n\n  /* Gracefully handle broken search */\n  } catch (err) {\n    el.hidden = true\n    return NEVER\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  ObservableInput,\n  combineLatest,\n  filter,\n  map,\n  startWith\n} from \"rxjs\"\n\nimport { getLocation } from \"~/browser\"\nimport {\n  SearchIndex,\n  setupSearchHighlighter\n} from \"~/integrations\"\nimport { h } from \"~/utilities\"\n\nimport { Component } from \"../../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search highlighting\n */\nexport interface SearchHighlight {\n  nodes: Map<ChildNode, string>        /* Map of replacements */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  index$: ObservableInput<SearchIndex> /* Search index observable */\n  location$: Observable<URL>           /* Location observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Mount search highlighting\n *\n * @param el - Content element\n * @param options - Options\n *\n * @returns Search highlighting component observable\n */\nexport function mountSearchHiglight(\n  el: HTMLElement, { index$, location$ }: MountOptions\n): Observable<Component<SearchHighlight>> {\n  return combineLatest([\n    index$,\n    location$\n      .pipe(\n        startWith(getLocation()),\n        filter(url => !!url.searchParams.get(\"h\"))\n      )\n  ])\n    .pipe(\n      map(([index, url]) => setupSearchHighlighter(index.config, true)(\n        url.searchParams.get(\"h\")!\n      )),\n      map(fn => {\n        const nodes = new Map<ChildNode, string>()\n\n        /* Traverse text nodes and collect matches */\n        const it = document.createNodeIterator(el, NodeFilter.SHOW_TEXT)\n        for (let node = it.nextNode(); node; node = it.nextNode()) {\n          if (node.parentElement?.offsetHeight) {\n            const original = node.textContent!\n            const replaced = fn(original)\n            if (replaced.length > original.length)\n              nodes.set(node as ChildNode, replaced)\n          }\n        }\n\n        /* Replace original nodes with matches */\n        for (const [node, text] of nodes) {\n          const { childNodes } = h(\"span\", null, text)\n          node.replaceWith(...Array.from(childNodes))\n        }\n\n        /* Return component */\n        return { ref: el, nodes }\n      })\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  animationFrameScheduler,\n  auditTime,\n  combineLatest,\n  defer,\n  distinctUntilChanged,\n  finalize,\n  map,\n  tap,\n  withLatestFrom\n} from \"rxjs\"\n\nimport {\n  Viewport,\n  getElement,\n  getElementOffset\n} from \"~/browser\"\n\nimport { Component } from \"../_\"\nimport { Header } from \"../header\"\nimport { Main } from \"../main\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Sidebar\n */\nexport interface Sidebar {\n  height: number                       /* Sidebar height */\n  locked: boolean                      /* Sidebar is locked */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  main$: Observable<Main>              /* Main area observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n  main$: Observable<Main>              /* Main area observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch sidebar\n *\n * This function returns an observable that computes the visual parameters of\n * the sidebar which depends on the vertical viewport offset, as well as the\n * height of the main area. When the page is scrolled beyond the header, the\n * sidebar is locked and fills the remaining space.\n *\n * @param el - Sidebar element\n * @param options - Options\n *\n * @returns Sidebar observable\n */\nexport function watchSidebar(\n  el: HTMLElement, { viewport$, main$ }: WatchOptions\n): Observable<Sidebar> {\n  const parent = el.parentElement!\n  const adjust =\n    parent.offsetTop -\n    parent.parentElement!.offsetTop\n\n  /* Compute the sidebar's available height and if it should be locked */\n  return combineLatest([main$, viewport$])\n    .pipe(\n      map(([{ offset, height }, { offset: { y } }]) => {\n        height = height\n          + Math.min(adjust, Math.max(0, y - offset))\n          - adjust\n        return {\n          height,\n          locked: y >= offset + adjust\n        }\n      }),\n      distinctUntilChanged((a, b) => (\n        a.height === b.height &&\n        a.locked === b.locked\n      ))\n    )\n}\n\n/**\n * Mount sidebar\n *\n * This function doesn't set the height of the actual sidebar, but of its first\n * child \u2013 the `.md-sidebar__scrollwrap` element in order to mitigiate jittery\n * sidebars when the footer is scrolled into view. At some point we switched\n * from `absolute` / `fixed` positioning to `sticky` positioning, significantly\n * reducing jitter in some browsers (respectively Firefox and Safari) when\n * scrolling from the top. However, top-aligned sticky positioning means that\n * the sidebar snaps to the bottom when the end of the container is reached.\n * This is what leads to the mentioned jitter, as the sidebar's height may be\n * updated too slowly.\n *\n * This behaviour can be mitigiated by setting the height of the sidebar to `0`\n * while preserving the padding, and the height on its first element.\n *\n * @param el - Sidebar element\n * @param options - Options\n *\n * @returns Sidebar component observable\n */\nexport function mountSidebar(\n  el: HTMLElement, { header$, ...options }: MountOptions\n): Observable<Component<Sidebar>> {\n  const inner = getElement(\".md-sidebar__scrollwrap\", el)\n  const { y } = getElementOffset(inner)\n  return defer(() => {\n    const push$ = new Subject<Sidebar>()\n    push$\n      .pipe(\n        auditTime(0, animationFrameScheduler),\n        withLatestFrom(header$)\n      )\n        .subscribe({\n\n          /* Handle emission */\n          next([{ height }, { height: offset }]) {\n            inner.style.height = `${height - 2 * y}px`\n            el.style.top       = `${offset}px`\n          },\n\n          /* Handle complete */\n          complete() {\n            inner.style.height = \"\"\n            el.style.top       = \"\"\n          }\n        })\n\n    /* Create and return component */\n    return watchSidebar(el, options)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { Repo, User } from \"github-types\"\nimport {\n  EMPTY,\n  Observable,\n  catchError,\n  defaultIfEmpty,\n  map,\n  zip\n} from \"rxjs\"\n\nimport { requestJSON } from \"~/browser\"\n\nimport { SourceFacts } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * GitHub release (partial)\n */\ninterface Release {\n  tag_name: string                     /* Tag name */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch GitHub repository facts\n *\n * @param user - GitHub user or organization\n * @param repo - GitHub repository\n *\n * @returns Repository facts observable\n */\nexport function fetchSourceFactsFromGitHub(\n  user: string, repo?: string\n): Observable<SourceFacts> {\n  if (typeof repo !== \"undefined\") {\n    const url = `https://api.github.com/repos/${user}/${repo}`\n    return zip(\n\n      /* Fetch version */\n      requestJSON<Release>(`${url}/releases/latest`)\n        .pipe(\n          catchError(() => EMPTY), // @todo refactor instant loading\n          map(release => ({\n            version: release.tag_name\n          })),\n          defaultIfEmpty({})\n        ),\n\n      /* Fetch stars and forks */\n      requestJSON<Repo>(url)\n        .pipe(\n          catchError(() => EMPTY), // @todo refactor instant loading\n          map(info => ({\n            stars: info.stargazers_count,\n            forks: info.forks_count\n          })),\n          defaultIfEmpty({})\n        )\n    )\n      .pipe(\n        map(([release, info]) => ({ ...release, ...info }))\n      )\n\n  /* User or organization */\n  } else {\n    const url = `https://api.github.com/users/${user}`\n    return requestJSON<User>(url)\n      .pipe(\n        map(info => ({\n          repositories: info.public_repos\n        })),\n        defaultIfEmpty({})\n      )\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { ProjectSchema } from \"gitlab\"\nimport {\n  EMPTY,\n  Observable,\n  catchError,\n  defaultIfEmpty,\n  map\n} from \"rxjs\"\n\nimport { requestJSON } from \"~/browser\"\n\nimport { SourceFacts } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch GitLab repository facts\n *\n * @param base - GitLab base\n * @param project - GitLab project\n *\n * @returns Repository facts observable\n */\nexport function fetchSourceFactsFromGitLab(\n  base: string, project: string\n): Observable<SourceFacts> {\n  const url = `https://${base}/api/v4/projects/${encodeURIComponent(project)}`\n  return requestJSON<ProjectSchema>(url)\n    .pipe(\n      catchError(() => EMPTY), // @todo refactor instant loading\n      map(({ star_count, forks_count }) => ({\n        stars: star_count,\n        forks: forks_count\n      })),\n      defaultIfEmpty({})\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport { EMPTY, Observable } from \"rxjs\"\n\nimport { fetchSourceFactsFromGitHub } from \"../github\"\nimport { fetchSourceFactsFromGitLab } from \"../gitlab\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Repository facts for repositories\n */\nexport interface RepositoryFacts {\n  stars?: number                       /* Number of stars */\n  forks?: number                       /* Number of forks */\n  version?: string                     /* Latest version */\n}\n\n/**\n * Repository facts for organizations\n */\nexport interface OrganizationFacts {\n  repositories?: number                /* Number of repositories */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Repository facts\n */\nexport type SourceFacts =\n  | RepositoryFacts\n  | OrganizationFacts\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch repository facts\n *\n * @param url - Repository URL\n *\n * @returns Repository facts observable\n */\nexport function fetchSourceFacts(\n  url: string\n): Observable<SourceFacts> {\n  const [type] = url.match(/(git(?:hub|lab))/i) || []\n  switch (type.toLowerCase()) {\n\n    /* GitHub repository */\n    case \"github\":\n      const [, user, repo] = url.match(/^.+github\\.com\\/([^/]+)\\/?([^/]+)?/i)!\n      return fetchSourceFactsFromGitHub(user, repo)\n\n    /* GitLab repository */\n    case \"gitlab\":\n      const [, base, slug] = url.match(/^.+?([^/]*gitlab[^/]+)\\/(.+?)\\/?$/i)!\n      return fetchSourceFactsFromGitLab(base, slug)\n\n    /* Everything else */\n    default:\n      return EMPTY\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  EMPTY,\n  Observable,\n  Subject,\n  catchError,\n  defer,\n  filter,\n  finalize,\n  map,\n  of,\n  shareReplay,\n  tap\n} from \"rxjs\"\n\nimport { getElement } from \"~/browser\"\nimport { renderSourceFacts } from \"~/templates\"\n\nimport { Component } from \"../../_\"\nimport {\n  SourceFacts,\n  fetchSourceFacts\n} from \"../facts\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Repository information\n */\nexport interface Source {\n  facts: SourceFacts                   /* Repository facts */\n}\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Repository information observable\n */\nlet fetch$: Observable<Source>\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch repository information\n *\n * This function tries to read the repository facts from session storage, and\n * if unsuccessful, fetches them from the underlying provider.\n *\n * @param el - Repository information element\n *\n * @returns Repository information observable\n */\nexport function watchSource(\n  el: HTMLAnchorElement\n): Observable<Source> {\n  return fetch$ ||= defer(() => {\n    const cached = __md_get<SourceFacts>(\"__source\", sessionStorage)\n    if (cached)\n      return of(cached)\n    else\n      return fetchSourceFacts(el.href)\n        .pipe(\n          tap(facts => __md_set(\"__source\", facts, sessionStorage))\n        )\n  })\n    .pipe(\n      catchError(() => EMPTY),\n      filter(facts => Object.keys(facts).length > 0),\n      map(facts => ({ facts })),\n      shareReplay(1)\n    )\n}\n\n/**\n * Mount repository information\n *\n * @param el - Repository information element\n *\n * @returns Repository information component observable\n */\nexport function mountSource(\n  el: HTMLAnchorElement\n): Observable<Component<Source>> {\n  const inner = getElement(\":scope > :last-child\", el)\n  return defer(() => {\n    const push$ = new Subject<Source>()\n    push$.subscribe(({ facts }) => {\n      inner.appendChild(renderSourceFacts(facts))\n      inner.classList.add(\"md-source__repository--active\")\n    })\n\n    /* Create and return component */\n    return watchSource(el)\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  defer,\n  distinctUntilKeyChanged,\n  finalize,\n  map,\n  of,\n  switchMap,\n  tap\n} from \"rxjs\"\n\nimport { feature } from \"~/_\"\nimport {\n  Viewport,\n  watchElementSize,\n  watchViewportAt\n} from \"~/browser\"\n\nimport { Component } from \"../_\"\nimport { Header } from \"../header\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Navigation tabs\n */\nexport interface Tabs {\n  hidden: boolean                      /* Navigation tabs are hidden */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch navigation tabs\n *\n * @param el - Navigation tabs element\n * @param options - Options\n *\n * @returns Navigation tabs observable\n */\nexport function watchTabs(\n  el: HTMLElement, { viewport$, header$ }: WatchOptions\n): Observable<Tabs> {\n  return watchElementSize(document.body)\n    .pipe(\n      switchMap(() => watchViewportAt(el, { header$, viewport$ })),\n      map(({ offset: { y } }) => {\n        return {\n          hidden: y >= 10\n        }\n      }),\n      distinctUntilKeyChanged(\"hidden\")\n    )\n}\n\n/**\n * Mount navigation tabs\n *\n * This function hides the navigation tabs when scrolling past the threshold\n * and makes them reappear in a nice CSS animation when scrolling back up.\n *\n * @param el - Navigation tabs element\n * @param options - Options\n *\n * @returns Navigation tabs component observable\n */\nexport function mountTabs(\n  el: HTMLElement, options: MountOptions\n): Observable<Component<Tabs>> {\n  return defer(() => {\n    const push$ = new Subject<Tabs>()\n    push$.subscribe({\n\n      /* Handle emission */\n      next({ hidden }) {\n        el.hidden = hidden\n      },\n\n      /* Handle complete */\n      complete() {\n        el.hidden = false\n      }\n    })\n\n    /* Create and return component */\n    return (\n      feature(\"navigation.tabs.sticky\")\n        ? of({ hidden: false })\n        : watchTabs(el, options)\n    )\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  bufferCount,\n  combineLatestWith,\n  debounceTime,\n  defer,\n  distinctUntilChanged,\n  distinctUntilKeyChanged,\n  finalize,\n  map,\n  of,\n  repeat,\n  scan,\n  share,\n  skip,\n  startWith,\n  switchMap,\n  takeLast,\n  takeUntil,\n  tap,\n  withLatestFrom\n} from \"rxjs\"\n\nimport { feature } from \"~/_\"\nimport {\n  Viewport,\n  getElement,\n  getElements,\n  getLocation,\n  getOptionalElement,\n  watchElementSize\n} from \"~/browser\"\n\nimport {\n  Component,\n  getComponentElement\n} from \"../_\"\nimport { Header } from \"../header\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Table of contents\n */\nexport interface TableOfContents {\n  prev: HTMLAnchorElement[][]          /* Anchors (previous) */\n  next: HTMLAnchorElement[][]          /* Anchors (next) */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n  target$: Observable<HTMLElement>     /* Location target observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch table of contents\n *\n * This is effectively a scroll spy implementation which will account for the\n * fixed header and automatically re-calculate anchor offsets when the viewport\n * is resized. The returned observable will only emit if the table of contents\n * needs to be repainted.\n *\n * This implementation tracks an anchor element's entire path starting from its\n * level up to the top-most anchor element, e.g. `[h3, h2, h1]`. Although the\n * Material theme currently doesn't make use of this information, it enables\n * the styling of the entire hierarchy through customization.\n *\n * Note that the current anchor is the last item of the `prev` anchor list.\n *\n * @param el - Table of contents element\n * @param options - Options\n *\n * @returns Table of contents observable\n */\nexport function watchTableOfContents(\n  el: HTMLElement, { viewport$, header$ }: WatchOptions\n): Observable<TableOfContents> {\n  const table = new Map<HTMLAnchorElement, HTMLElement>()\n\n  /* Compute anchor-to-target mapping */\n  const anchors = getElements<HTMLAnchorElement>(\"[href^=\\\\#]\", el)\n  for (const anchor of anchors) {\n    const id = decodeURIComponent(anchor.hash.substring(1))\n    const target = getOptionalElement(`[id=\"${id}\"]`)\n    if (typeof target !== \"undefined\")\n      table.set(anchor, target)\n  }\n\n  /* Compute necessary adjustment for header */\n  const adjust$ = header$\n    .pipe(\n      distinctUntilKeyChanged(\"height\"),\n      map(({ height }) => {\n        const main = getComponentElement(\"main\")\n        const grid = getElement(\":scope > :first-child\", main)\n        return height + 0.8 * (\n          grid.offsetTop -\n          main.offsetTop\n        )\n      }),\n      share()\n    )\n\n  /* Compute partition of previous and next anchors */\n  const partition$ = watchElementSize(document.body)\n    .pipe(\n      distinctUntilKeyChanged(\"height\"),\n\n      /* Build index to map anchor paths to vertical offsets */\n      switchMap(body => defer(() => {\n        let path: HTMLAnchorElement[] = []\n        return of([...table].reduce((index, [anchor, target]) => {\n          while (path.length) {\n            const last = table.get(path[path.length - 1])!\n            if (last.tagName >= target.tagName) {\n              path.pop()\n            } else {\n              break\n            }\n          }\n\n          /* If the current anchor is hidden, continue with its parent */\n          let offset = target.offsetTop\n          while (!offset && target.parentElement) {\n            target = target.parentElement\n            offset = target.offsetTop\n          }\n\n          /* Map reversed anchor path to vertical offset */\n          return index.set(\n            [...path = [...path, anchor]].reverse(),\n            offset\n          )\n        }, new Map<HTMLAnchorElement[], number>()))\n      })\n        .pipe(\n\n          /* Sort index by vertical offset (see https://bit.ly/30z6QSO) */\n          map(index => new Map([...index].sort(([, a], [, b]) => a - b))),\n          combineLatestWith(adjust$),\n\n          /* Re-compute partition when viewport offset changes */\n          switchMap(([index, adjust]) => viewport$\n            .pipe(\n              scan(([prev, next], { offset: { y }, size }) => {\n                const last = y + size.height >= Math.floor(body.height)\n\n                /* Look forward */\n                while (next.length) {\n                  const [, offset] = next[0]\n                  if (offset - adjust < y || last) {\n                    prev = [...prev, next.shift()!]\n                  } else {\n                    break\n                  }\n                }\n\n                /* Look backward */\n                while (prev.length) {\n                  const [, offset] = prev[prev.length - 1]\n                  if (offset - adjust >= y && !last) {\n                    next = [prev.pop()!, ...next]\n                  } else {\n                    break\n                  }\n                }\n\n                /* Return partition */\n                return [prev, next]\n              }, [[], [...index]]),\n              distinctUntilChanged((a, b) => (\n                a[0] === b[0] &&\n                a[1] === b[1]\n              ))\n            )\n          )\n        )\n      )\n    )\n\n  /* Compute and return anchor list migrations */\n  return partition$\n    .pipe(\n      map(([prev, next]) => ({\n        prev: prev.map(([path]) => path),\n        next: next.map(([path]) => path)\n      })),\n\n      /* Extract anchor list migrations */\n      startWith({ prev: [], next: [] }),\n      bufferCount(2, 1),\n      map(([a, b]) => {\n\n        /* Moving down */\n        if (a.prev.length < b.prev.length) {\n          return {\n            prev: b.prev.slice(Math.max(0, a.prev.length - 1), b.prev.length),\n            next: []\n          }\n\n        /* Moving up */\n        } else {\n          return {\n            prev: b.prev.slice(-1),\n            next: b.next.slice(0, b.next.length - a.next.length)\n          }\n        }\n      })\n    )\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Mount table of contents\n *\n * @param el - Table of contents element\n * @param options - Options\n *\n * @returns Table of contents component observable\n */\nexport function mountTableOfContents(\n  el: HTMLElement, { viewport$, header$, target$ }: MountOptions\n): Observable<Component<TableOfContents>> {\n  return defer(() => {\n    const push$ = new Subject<TableOfContents>()\n    const done$ = push$.pipe(takeLast(1))\n    push$.subscribe(({ prev, next }) => {\n\n      /* Look forward */\n      for (const [anchor] of next) {\n        anchor.classList.remove(\"md-nav__link--passed\")\n        anchor.classList.remove(\"md-nav__link--active\")\n      }\n\n      /* Look backward */\n      for (const [index, [anchor]] of prev.entries()) {\n        anchor.classList.add(\"md-nav__link--passed\")\n        anchor.classList.toggle(\n          \"md-nav__link--active\",\n          index === prev.length - 1\n        )\n      }\n    })\n\n    /* Set up anchor tracking, if enabled */\n    if (feature(\"navigation.tracking\"))\n      viewport$\n        .pipe(\n          takeUntil(done$),\n          distinctUntilKeyChanged(\"offset\"),\n          debounceTime(250),\n          skip(1),\n          takeUntil(target$.pipe(skip(1))),\n          repeat({ delay: 250 }),\n          withLatestFrom(push$)\n        )\n          .subscribe(([, { prev }]) => {\n            const url = getLocation()\n\n            /* Set hash fragment to active anchor */\n            const anchor = prev[prev.length - 1]\n            if (anchor && anchor.length) {\n              const [active] = anchor\n              const { hash } = new URL(active.href)\n              if (url.hash !== hash) {\n                url.hash = hash\n                history.replaceState({}, \"\", `${url}`)\n              }\n\n            /* Reset anchor when at the top */\n            } else {\n              url.hash = \"\"\n              history.replaceState({}, \"\", `${url}`)\n            }\n          })\n\n    /* Create and return component */\n    return watchTableOfContents(el, { viewport$, header$ })\n      .pipe(\n        tap(state => push$.next(state)),\n        finalize(() => push$.complete()),\n        map(state => ({ ref: el, ...state }))\n      )\n  })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  Subject,\n  bufferCount,\n  combineLatest,\n  distinctUntilChanged,\n  distinctUntilKeyChanged,\n  endWith,\n  finalize,\n  map,\n  repeat,\n  skip,\n  takeLast,\n  takeUntil,\n  tap\n} from \"rxjs\"\n\nimport { Viewport } from \"~/browser\"\n\nimport { Component } from \"../_\"\nimport { Header } from \"../header\"\nimport { Main } from \"../main\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Back-to-top button\n */\nexport interface BackToTop {\n  hidden: boolean                      /* Back-to-top button is hidden */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch options\n */\ninterface WatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  main$: Observable<Main>              /* Main area observable */\n  target$: Observable<HTMLElement>     /* Location target observable */\n}\n\n/**\n * Mount options\n */\ninterface MountOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  header$: Observable<Header>          /* Header observable */\n  main$: Observable<Main>              /* Main area observable */\n  target$: Observable<HTMLElement>     /* Location target observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Watch back-to-top\n *\n * @param _el - Back-to-top element\n * @param options - Options\n *\n * @returns Back-to-top observable\n */\nexport function watchBackToTop(\n  _el: HTMLElement, { viewport$, main$, target$ }: WatchOptions\n): Observable<BackToTop> {\n\n  /* Compute direction */\n  const direction$ = viewport$\n    .pipe(\n      map(({ offset: { y } }) => y),\n      bufferCount(2, 1),\n      map(([a, b]) => a > b && b > 0),\n      distinctUntilChanged()\n    )\n\n  /* Compute whether main area is active */\n  const active$ = main$\n    .pipe(\n      map(({ active }) => active)\n    )\n\n  /* Compute threshold for hiding */\n  return combineLatest([active$, direction$])\n    .pipe(\n      map(([active, direction]) => !(active && direction)),\n      distinctUntilChanged(),\n      takeUntil(target$.pipe(skip(1))),\n      endWith(true),\n      repeat({ delay: 250 }),\n      map(hidden => ({ hidden }))\n    )\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Mount back-to-top\n *\n * @param el - Back-to-top element\n * @param options - Options\n *\n * @returns Back-to-top component observable\n */\nexport function mountBackToTop(\n  el: HTMLElement, { viewport$, header$, main$, target$ }: MountOptions\n): Observable<Component<BackToTop>> {\n  const push$ = new Subject<BackToTop>()\n  const done$ = push$.pipe(takeLast(1))\n  push$.subscribe({\n\n    /* Handle emission */\n    next({ hidden }) {\n      el.hidden = hidden\n      if (hidden) {\n        el.setAttribute(\"tabindex\", \"-1\")\n        el.blur()\n      } else {\n        el.removeAttribute(\"tabindex\")\n      }\n    },\n\n    /* Handle complete */\n    complete() {\n      el.style.top = \"\"\n      el.hidden = true\n      el.removeAttribute(\"tabindex\")\n    }\n  })\n\n  /* Watch header height */\n  header$\n    .pipe(\n      takeUntil(done$),\n      distinctUntilKeyChanged(\"height\")\n    )\n      .subscribe(({ height }) => {\n        el.style.top = `${height + 16}px`\n      })\n\n  /* Create and return component */\n  return watchBackToTop(el, { viewport$, main$, target$ })\n    .pipe(\n      tap(state => push$.next(state)),\n      finalize(() => push$.complete()),\n      map(state => ({ ref: el, ...state }))\n    )\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  fromEvent,\n  map,\n  mergeMap,\n  switchMap,\n  takeWhile,\n  tap,\n  withLatestFrom\n} from \"rxjs\"\n\nimport { getElements } from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Patch options\n */\ninterface PatchOptions {\n  document$: Observable<Document>      /* Document observable */\n  tablet$: Observable<boolean>         /* Media tablet observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Patch indeterminate checkboxes\n *\n * This function replaces the indeterminate \"pseudo state\" with the actual\n * indeterminate state, which is used to keep navigation always expanded.\n *\n * @param options - Options\n */\nexport function patchIndeterminate(\n  { document$, tablet$ }: PatchOptions\n): void {\n  document$\n    .pipe(\n      switchMap(() => getElements<HTMLInputElement>(\n        // @todo `data-md-state` is deprecated and removed in v9\n        \".md-toggle--indeterminate, [data-md-state=indeterminate]\"\n      )),\n      tap(el => {\n        el.indeterminate = true\n        el.checked = false\n      }),\n      mergeMap(el => fromEvent(el, \"change\")\n        .pipe(\n          takeWhile(() => el.classList.contains(\"md-toggle--indeterminate\")),\n          map(() => el)\n        )\n      ),\n      withLatestFrom(tablet$)\n    )\n      .subscribe(([el, tablet]) => {\n        el.classList.remove(\"md-toggle--indeterminate\")\n        if (tablet)\n          el.checked = false\n      })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  filter,\n  fromEvent,\n  map,\n  mergeMap,\n  switchMap,\n  tap\n} from \"rxjs\"\n\nimport { getElements } from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Patch options\n */\ninterface PatchOptions {\n  document$: Observable<Document>      /* Document observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Check whether the given device is an Apple device\n *\n * @returns Test result\n */\nfunction isAppleDevice(): boolean {\n  return /(iPad|iPhone|iPod)/.test(navigator.userAgent)\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Patch all elements with `data-md-scrollfix` attributes\n *\n * This is a year-old patch which ensures that overflow scrolling works at the\n * top and bottom of containers on iOS by ensuring a `1px` scroll offset upon\n * the start of a touch event.\n *\n * @see https://bit.ly/2SCtAOO - Original source\n *\n * @param options - Options\n */\nexport function patchScrollfix(\n  { document$ }: PatchOptions\n): void {\n  document$\n    .pipe(\n      switchMap(() => getElements(\"[data-md-scrollfix]\")),\n      tap(el => el.removeAttribute(\"data-md-scrollfix\")),\n      filter(isAppleDevice),\n      mergeMap(el => fromEvent(el, \"touchstart\")\n        .pipe(\n          map(() => el)\n        )\n      )\n    )\n      .subscribe(el => {\n        const top = el.scrollTop\n\n        /* We're at the top of the container */\n        if (top === 0) {\n          el.scrollTop = 1\n\n        /* We're at the bottom of the container */\n        } else if (top + el.offsetHeight === el.scrollHeight) {\n          el.scrollTop = top - 1\n        }\n      })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  Observable,\n  combineLatest,\n  delay,\n  map,\n  of,\n  switchMap,\n  withLatestFrom\n} from \"rxjs\"\n\nimport {\n  Viewport,\n  watchToggle\n} from \"~/browser\"\n\n/* ----------------------------------------------------------------------------\n * Helper types\n * ------------------------------------------------------------------------- */\n\n/**\n * Patch options\n */\ninterface PatchOptions {\n  viewport$: Observable<Viewport>      /* Viewport observable */\n  tablet$: Observable<boolean>         /* Media tablet observable */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Patch the document body to lock when search is open\n *\n * For mobile and tablet viewports, the search is rendered full screen, which\n * leads to scroll leaking when at the top or bottom of the search result. This\n * function locks the body when the search is in full screen mode, and restores\n * the scroll position when leaving.\n *\n * @param options - Options\n */\nexport function patchScrolllock(\n  { viewport$, tablet$ }: PatchOptions\n): void {\n  combineLatest([watchToggle(\"search\"), tablet$])\n    .pipe(\n      map(([active, tablet]) => active && !tablet),\n      switchMap(active => of(active)\n        .pipe(\n          delay(active ? 400 : 100)\n        )\n      ),\n      withLatestFrom(viewport$)\n    )\n      .subscribe(([active, { offset: { y }}]) => {\n        if (active) {\n          document.body.setAttribute(\"data-md-scrolllock\", \"\")\n          document.body.style.top = `-${y}px`\n        } else {\n          const value = -1 * parseInt(document.body.style.top, 10)\n          document.body.removeAttribute(\"data-md-scrolllock\")\n          document.body.style.top = \"\"\n          if (value)\n            window.scrollTo(0, value)\n        }\n      })\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\n/* ----------------------------------------------------------------------------\n * Polyfills\n * ------------------------------------------------------------------------- */\n\n/* Polyfill `Object.entries` */\nif (!Object.entries)\n  Object.entries = function (obj: object) {\n    const data: [string, string][] = []\n    for (const key of Object.keys(obj))\n      // @ts-expect-error - ignore property access warning\n      data.push([key, obj[key]])\n\n    /* Return entries */\n    return data\n  }\n\n/* Polyfill `Object.values` */\nif (!Object.values)\n  Object.values = function (obj: object) {\n    const data: string[] = []\n    for (const key of Object.keys(obj))\n      // @ts-expect-error - ignore property access warning\n      data.push(obj[key])\n\n    /* Return values */\n    return data\n  }\n\n/* ------------------------------------------------------------------------- */\n\n/* Polyfills for `Element` */\nif (typeof Element !== \"undefined\") {\n\n  /* Polyfill `Element.scrollTo` */\n  if (!Element.prototype.scrollTo)\n    Element.prototype.scrollTo = function (\n      x?: ScrollToOptions | number, y?: number\n    ): void {\n      if (typeof x === \"object\") {\n        this.scrollLeft = x.left!\n        this.scrollTop = x.top!\n      } else {\n        this.scrollLeft = x!\n        this.scrollTop = y!\n      }\n    }\n\n  /* Polyfill `Element.replaceWith` */\n  if (!Element.prototype.replaceWith)\n    Element.prototype.replaceWith = function (\n      ...nodes: Array<string | Node>\n    ): void {\n      const parent = this.parentNode\n      if (parent) {\n        if (nodes.length === 0)\n          parent.removeChild(this)\n\n        /* Replace children and create text nodes */\n        for (let i = nodes.length - 1; i >= 0; i--) {\n          let node = nodes[i]\n          if (typeof node !== \"object\")\n            node = document.createTextNode(node)\n          else if (node.parentNode)\n            node.parentNode.removeChild(node)\n\n          /* Replace child or insert before previous sibling */\n          if (!i)\n            parent.replaceChild(node, this)\n          else\n            parent.insertBefore(this.previousSibling!, node)\n        }\n      }\n    }\n}\n"],
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-  "names": []
-}
diff --git a/docs/assets/javascripts/lunr/min/lunr.ar.min.js b/docs/assets/javascripts/lunr/min/lunr.ar.min.js
index 248ddc5d..9b06c26c 100644
--- a/docs/assets/javascripts/lunr/min/lunr.ar.min.js
+++ b/docs/assets/javascripts/lunr/min/lunr.ar.min.js
@@ -1 +1 @@
-!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.ar=function(){this.pipeline.reset(),this.pipeline.add(e.ar.trimmer,e.ar.stopWordFilter,e.ar.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.ar.stemmer))},e.ar.wordCharacters="ء-ٛٱـ",e.ar.trimmer=e.trimmerSupport.generateTrimmer(e.ar.wordCharacters),e.Pipeline.registerFunction(e.ar.trimmer,"trimmer-ar"),e.ar.stemmer=function(){var e=this;return e.result=!1,e.preRemoved=!1,e.sufRemoved=!1,e.pre={pre1:"ف ك ب و س ل ن ا ي ت",pre2:"ال لل",pre3:"بال وال فال تال كال ولل",pre4:"فبال كبال وبال وكال"},e.suf={suf1:"ه ك ت ن ا ي",suf2:"نك نه ها وك يا اه ون ين تن تم نا وا ان كم كن ني نن ما هم هن تك ته ات يه",suf3:"تين كهم نيه نهم ونه وها يهم ونا ونك وني وهم تكم تنا تها تني تهم كما كها ناه نكم هنا تان يها",suf4:"كموه ناها ونني ونهم تكما تموه تكاه كماه ناكم ناهم نيها 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diff --git a/docs/assets/javascripts/lunr/min/lunr.zh.min.js b/docs/assets/javascripts/lunr/min/lunr.zh.min.js
index 7727bbe2..9838ef96 100644
--- a/docs/assets/javascripts/lunr/min/lunr.zh.min.js
+++ b/docs/assets/javascripts/lunr/min/lunr.zh.min.js
@@ -1 +1 @@
-!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r(require("nodejieba")):r()(e.lunr)}(this,function(e){return function(r,t){if(void 0===r)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===r.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");var i="2"==r.version[0];r.zh=function(){this.pipeline.reset(),this.pipeline.add(r.zh.trimmer,r.zh.stopWordFilter,r.zh.stemmer),i?this.tokenizer=r.zh.tokenizer:(r.tokenizer&&(r.tokenizer=r.zh.tokenizer),this.tokenizerFn&&(this.tokenizerFn=r.zh.tokenizer))},r.zh.tokenizer=function(n){if(!arguments.length||null==n||void 0==n)return[];if(Array.isArray(n))return n.map(function(e){return i?new r.Token(e.toLowerCase()):e.toLowerCase()});t&&e.load(t);var o=n.toString().trim().toLowerCase(),s=[];e.cut(o,!0).forEach(function(e){s=s.concat(e.split(" "))}),s=s.filter(function(e){return!!e});var u=0;return s.map(function(e,t){if(i){var n=o.indexOf(e,u),s={};return s.position=[n,e.length],s.index=t,u=n,new r.Token(e,s)}return e})},r.zh.wordCharacters="\\w一-龥",r.zh.trimmer=r.trimmerSupport.generateTrimmer(r.zh.wordCharacters),r.Pipeline.registerFunction(r.zh.trimmer,"trimmer-zh"),r.zh.stemmer=function(){return function(e){return e}}(),r.Pipeline.registerFunction(r.zh.stemmer,"stemmer-zh"),r.zh.stopWordFilter=r.generateStopWordFilter("的 一 不 在 人 有 是 为 以 于 上 他 而 后 之 来 及 了 因 下 可 到 由 这 与 也 此 但 并 个 其 已 无 小 我 们 起 最 再 今 去 好 只 又 或 很 亦 某 把 那 你 乃 它 吧 被 比 别 趁 当 从 到 得 打 凡 儿 尔 该 各 给 跟 和 何 还 即 几 既 看 据 距 靠 啦 了 另 么 每 们 嘛 拿 哪 那 您 凭 且 却 让 仍 啥 如 若 使 谁 虽 随 同 所 她 哇 嗡 往 哪 些 向 沿 哟 用 于 咱 则 怎 曾 至 致 着 诸 自".split(" ")),r.Pipeline.registerFunction(r.zh.stopWordFilter,"stopWordFilter-zh")}});
\ No newline at end of file
+!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r(require("@node-rs/jieba")):r()(e.lunr)}(this,function(e){return function(r,t){if(void 0===r)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===r.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");var i="2"==r.version[0];r.zh=function(){this.pipeline.reset(),this.pipeline.add(r.zh.trimmer,r.zh.stopWordFilter,r.zh.stemmer),i?this.tokenizer=r.zh.tokenizer:(r.tokenizer&&(r.tokenizer=r.zh.tokenizer),this.tokenizerFn&&(this.tokenizerFn=r.zh.tokenizer))},r.zh.tokenizer=function(n){if(!arguments.length||null==n||void 0==n)return[];if(Array.isArray(n))return n.map(function(e){return i?new r.Token(e.toLowerCase()):e.toLowerCase()});t&&e.load(t);var o=n.toString().trim().toLowerCase(),s=[];e.cut(o,!0).forEach(function(e){s=s.concat(e.split(" "))}),s=s.filter(function(e){return!!e});var u=0;return s.map(function(e,t){if(i){var n=o.indexOf(e,u),s={};return s.position=[n,e.length],s.index=t,u=n,new r.Token(e,s)}return e})},r.zh.wordCharacters="\\w一-龥",r.zh.trimmer=r.trimmerSupport.generateTrimmer(r.zh.wordCharacters),r.Pipeline.registerFunction(r.zh.trimmer,"trimmer-zh"),r.zh.stemmer=function(){return function(e){return e}}(),r.Pipeline.registerFunction(r.zh.stemmer,"stemmer-zh"),r.zh.stopWordFilter=r.generateStopWordFilter("的 一 不 在 人 有 是 为 以 于 上 他 而 后 之 来 及 了 因 下 可 到 由 这 与 也 此 但 并 个 其 已 无 小 我 们 起 最 再 今 去 好 只 又 或 很 亦 某 把 那 你 乃 它 吧 被 比 别 趁 当 从 到 得 打 凡 儿 尔 该 各 给 跟 和 何 还 即 几 既 看 据 距 靠 啦 了 另 么 每 们 嘛 拿 哪 那 您 凭 且 却 让 仍 啥 如 若 使 谁 虽 随 同 所 她 哇 嗡 往 哪 些 向 沿 哟 用 于 咱 则 怎 曾 至 致 着 诸 自".split(" ")),r.Pipeline.registerFunction(r.zh.stopWordFilter,"stopWordFilter-zh")}});
\ No newline at end of file
diff --git a/docs/assets/javascripts/workers/search.b97dbffb.min.js b/docs/assets/javascripts/workers/search.b97dbffb.min.js
deleted file mode 100644
index 8201c5e5..00000000
--- a/docs/assets/javascripts/workers/search.b97dbffb.min.js
+++ /dev/null
@@ -1,48 +0,0 @@
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- * Copyright (C) 2020 Oliver Nightingale
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- * lunr.stemmer
- * Copyright (C) 2020 Oliver Nightingale
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- * lunr.stopWordFilter
- * Copyright (C) 2020 Oliver Nightingale
- */t.generateStopWordFilter=function(e){var r=e.reduce(function(n,i){return n[i]=i,n},{});return function(n){if(n&&r[n.toString()]!==n.toString())return n}},t.stopWordFilter=t.generateStopWordFilter(["a","able","about","across","after","all","almost","also","am","among","an","and","any","are","as","at","be","because","been","but","by","can","cannot","could","dear","did","do","does","either","else","ever","every","for","from","get","got","had","has","have","he","her","hers","him","his","how","however","i","if","in","into","is","it","its","just","least","let","like","likely","may","me","might","most","must","my","neither","no","nor","not","of","off","often","on","only","or","other","our","own","rather","said","say","says","she","should","since","so","some","than","that","the","their","them","then","there","these","they","this","tis","to","too","twas","us","wants","was","we","were","what","when","where","which","while","who","whom","why","will","with","would","yet","you","your"]),t.Pipeline.registerFunction(t.stopWordFilter,"stopWordFilter");/*!
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- * Copyright (C) 2020 Oliver Nightingale
- */t.trimmer=function(e){return e.update(function(r){return r.replace(/^\W+/,"").replace(/\W+$/,"")})},t.Pipeline.registerFunction(t.trimmer,"trimmer");/*!
- * lunr.TokenSet
- * Copyright (C) 2020 Oliver Nightingale
- */t.TokenSet=function(){this.final=!1,this.edges={},this.id=t.TokenSet._nextId,t.TokenSet._nextId+=1},t.TokenSet._nextId=1,t.TokenSet.fromArray=function(e){for(var r=new t.TokenSet.Builder,n=0,i=e.length;n<i;n++)r.insert(e[n]);return r.finish(),r.root},t.TokenSet.fromClause=function(e){return"editDistance"in e?t.TokenSet.fromFuzzyString(e.term,e.editDistance):t.TokenSet.fromString(e.term)},t.TokenSet.fromFuzzyString=function(e,r){for(var n=new t.TokenSet,i=[{node:n,editsRemaining:r,str:e}];i.length;){var s=i.pop();if(s.str.length>0){var o=s.str.charAt(0),a;o in s.node.edges?a=s.node.edges[o]:(a=new t.TokenSet,s.node.edges[o]=a),s.str.length==1&&(a.final=!0),i.push({node:a,editsRemaining:s.editsRemaining,str:s.str.slice(1)})}if(s.editsRemaining!=0){if("*"in s.node.edges)var u=s.node.edges["*"];else{var u=new t.TokenSet;s.node.edges["*"]=u}if(s.str.length==0&&(u.final=!0),i.push({node:u,editsRemaining:s.editsRemaining-1,str:s.str}),s.str.length>1&&i.push({node:s.node,editsRemaining:s.editsRemaining-1,str:s.str.slice(1)}),s.str.length==1&&(s.node.final=!0),s.str.length>=1){if("*"in s.node.edges)var c=s.node.edges["*"];else{var c=new t.TokenSet;s.node.edges["*"]=c}s.str.length==1&&(c.final=!0),i.push({node:c,editsRemaining:s.editsRemaining-1,str:s.str.slice(1)})}if(s.str.length>1){var h=s.str.charAt(0),y=s.str.charAt(1),g;y in s.node.edges?g=s.node.edges[y]:(g=new t.TokenSet,s.node.edges[y]=g),s.str.length==1&&(g.final=!0),i.push({node:g,editsRemaining:s.editsRemaining-1,str:h+s.str.slice(2)})}}}return n},t.TokenSet.fromString=function(e){for(var r=new t.TokenSet,n=r,i=0,s=e.length;i<s;i++){var o=e[i],a=i==s-1;if(o=="*")r.edges[o]=r,r.final=a;else{var u=new t.TokenSet;u.final=a,r.edges[o]=u,r=u}}return n},t.TokenSet.prototype.toArray=function(){for(var e=[],r=[{prefix:"",node:this}];r.length;){var n=r.pop(),i=Object.keys(n.node.edges),s=i.length;n.node.final&&(n.prefix.charAt(0),e.push(n.prefix));for(var o=0;o<s;o++){var a=i[o];r.push({prefix:n.prefix.concat(a),node:n.node.edges[a]})}}return e},t.TokenSet.prototype.toString=function(){if(this._str)return this._str;for(var e=this.final?"1":"0",r=Object.keys(this.edges).sort(),n=r.length,i=0;i<n;i++){var s=r[i],o=this.edges[s];e=e+s+o.id}return e},t.TokenSet.prototype.intersect=function(e){for(var r=new t.TokenSet,n=void 0,i=[{qNode:e,output:r,node:this}];i.length;){n=i.pop();for(var s=Object.keys(n.qNode.edges),o=s.length,a=Object.keys(n.node.edges),u=a.length,c=0;c<o;c++)for(var h=s[c],y=0;y<u;y++){var g=a[y];if(g==h||h=="*"){var b=n.node.edges[g],m=n.qNode.edges[h],Q=b.final&&m.final,p=void 0;g in n.output.edges?(p=n.output.edges[g],p.final=p.final||Q):(p=new t.TokenSet,p.final=Q,n.output.edges[g]=p),i.push({qNode:m,output:p,node:b})}}}return r},t.TokenSet.Builder=function(){this.previousWord="",this.root=new t.TokenSet,this.uncheckedNodes=[],this.minimizedNodes={}},t.TokenSet.Builder.prototype.insert=function(e){var r,n=0;if(e<this.previousWord)throw new Error("Out of order word insertion");for(var i=0;i<e.length&&i<this.previousWord.length&&e[i]==this.previousWord[i];i++)n++;this.minimize(n),this.uncheckedNodes.length==0?r=this.root:r=this.uncheckedNodes[this.uncheckedNodes.length-1].child;for(var i=n;i<e.length;i++){var s=new t.TokenSet,o=e[i];r.edges[o]=s,this.uncheckedNodes.push({parent:r,char:o,child:s}),r=s}r.final=!0,this.previousWord=e},t.TokenSet.Builder.prototype.finish=function(){this.minimize(0)},t.TokenSet.Builder.prototype.minimize=function(e){for(var r=this.uncheckedNodes.length-1;r>=e;r--){var n=this.uncheckedNodes[r],i=n.child.toString();i in this.minimizedNodes?n.parent.edges[n.char]=this.minimizedNodes[i]:(n.child._str=i,this.minimizedNodes[i]=n.child),this.uncheckedNodes.pop()}};/*!
- * lunr.Index
- * Copyright (C) 2020 Oliver Nightingale
- */t.Index=function(e){this.invertedIndex=e.invertedIndex,this.fieldVectors=e.fieldVectors,this.tokenSet=e.tokenSet,this.fields=e.fields,this.pipeline=e.pipeline},t.Index.prototype.search=function(e){return this.query(function(r){var n=new t.QueryParser(e,r);n.parse()})},t.Index.prototype.query=function(e){for(var r=new t.Query(this.fields),n=Object.create(null),i=Object.create(null),s=Object.create(null),o=Object.create(null),a=Object.create(null),u=0;u<this.fields.length;u++)i[this.fields[u]]=new t.Vector;e.call(r,r);for(var u=0;u<r.clauses.length;u++){var c=r.clauses[u],h=null,y=t.Set.empty;c.usePipeline?h=this.pipeline.runString(c.term,{fields:c.fields}):h=[c.term];for(var g=0;g<h.length;g++){var b=h[g];c.term=b;var m=t.TokenSet.fromClause(c),Q=this.tokenSet.intersect(m).toArray();if(Q.length===0&&c.presence===t.Query.presence.REQUIRED){for(var p=0;p<c.fields.length;p++){var d=c.fields[p];o[d]=t.Set.empty}break}for(var w=0;w<Q.length;w++)for(var L=Q[w],k=this.invertedIndex[L],I=k._index,p=0;p<c.fields.length;p++){var d=c.fields[p],j=k[d],F=Object.keys(j),A=L+"/"+d,N=new t.Set(F);if(c.presence==t.Query.presence.REQUIRED&&(y=y.union(N),o[d]===void 0&&(o[d]=t.Set.complete)),c.presence==t.Query.presence.PROHIBITED){a[d]===void 0&&(a[d]=t.Set.empty),a[d]=a[d].union(N);continue}if(i[d].upsert(I,c.boost,function(pe,de){return pe+de}),!s[A]){for(var C=0;C<F.length;C++){var $=F[C],T=new t.FieldRef($,d),V=j[$],B;(B=n[T])===void 0?n[T]=new t.MatchData(L,d,V):B.add(L,d,V)}s[A]=!0}}}if(c.presence===t.Query.presence.REQUIRED)for(var p=0;p<c.fields.length;p++){var d=c.fields[p];o[d]=o[d].intersect(y)}}for(var D=t.Set.complete,O=t.Set.empty,u=0;u<this.fields.length;u++){var d=this.fields[u];o[d]&&(D=D.intersect(o[d])),a[d]&&(O=O.union(a[d]))}var l=Object.keys(n),v=[],P=Object.create(null);if(r.isNegated()){l=Object.keys(this.fieldVectors);for(var u=0;u<l.length;u++){var T=l[u],E=t.FieldRef.fromString(T);n[T]=new t.MatchData}}for(var u=0;u<l.length;u++){var E=t.FieldRef.fromString(l[u]),f=E.docRef;if(!!D.contains(f)&&!O.contains(f)){var x=this.fieldVectors[E],R=i[E.fieldName].similarity(x),_;if((_=P[f])!==void 0)_.score+=R,_.matchData.combine(n[E]);else{var S={ref:f,score:R,matchData:n[E]};P[f]=S,v.push(S)}}}return v.sort(function(he,fe){return fe.score-he.score})},t.Index.prototype.toJSON=function(){var e=Object.keys(this.invertedIndex).sort().map(function(n){return[n,this.invertedIndex[n]]},this),r=Object.keys(this.fieldVectors).map(function(n){return[n,this.fieldVectors[n].toJSON()]},this);return{version:t.version,fields:this.fields,fieldVectors:r,invertedIndex:e,pipeline:this.pipeline.toJSON()}},t.Index.load=function(e){var r={},n={},i=e.fieldVectors,s=Object.create(null),o=e.invertedIndex,a=new t.TokenSet.Builder,u=t.Pipeline.load(e.pipeline);e.version!=t.version&&t.utils.warn("Version mismatch when loading serialised index. Current version of lunr '"+t.version+"' does not match serialized index '"+e.version+"'");for(var c=0;c<i.length;c++){var h=i[c],y=h[0],g=h[1];n[y]=new t.Vector(g)}for(var c=0;c<o.length;c++){var h=o[c],b=h[0],m=h[1];a.insert(b),s[b]=m}return a.finish(),r.fields=e.fields,r.fieldVectors=n,r.invertedIndex=s,r.tokenSet=a.root,r.pipeline=u,new t.Index(r)};/*!
- * lunr.Builder
- * Copyright (C) 2020 Oliver Nightingale
- */t.Builder=function(){this._ref="id",this._fields=Object.create(null),this._documents=Object.create(null),this.invertedIndex=Object.create(null),this.fieldTermFrequencies={},this.fieldLengths={},this.tokenizer=t.tokenizer,this.pipeline=new t.Pipeline,this.searchPipeline=new t.Pipeline,this.documentCount=0,this._b=.75,this._k1=1.2,this.termIndex=0,this.metadataWhitelist=[]},t.Builder.prototype.ref=function(e){this._ref=e},t.Builder.prototype.field=function(e,r){if(/\//.test(e))throw new RangeError("Field '"+e+"' contains illegal character '/'");this._fields[e]=r||{}},t.Builder.prototype.b=function(e){e<0?this._b=0:e>1?this._b=1:this._b=e},t.Builder.prototype.k1=function(e){this._k1=e},t.Builder.prototype.add=function(e,r){var n=e[this._ref],i=Object.keys(this._fields);this._documents[n]=r||{},this.documentCount+=1;for(var s=0;s<i.length;s++){var o=i[s],a=this._fields[o].extractor,u=a?a(e):e[o],c=this.tokenizer(u,{fields:[o]}),h=this.pipeline.run(c),y=new t.FieldRef(n,o),g=Object.create(null);this.fieldTermFrequencies[y]=g,this.fieldLengths[y]=0,this.fieldLengths[y]+=h.length;for(var b=0;b<h.length;b++){var m=h[b];if(g[m]==null&&(g[m]=0),g[m]+=1,this.invertedIndex[m]==null){var Q=Object.create(null);Q._index=this.termIndex,this.termIndex+=1;for(var p=0;p<i.length;p++)Q[i[p]]=Object.create(null);this.invertedIndex[m]=Q}this.invertedIndex[m][o][n]==null&&(this.invertedIndex[m][o][n]=Object.create(null));for(var d=0;d<this.metadataWhitelist.length;d++){var w=this.metadataWhitelist[d],L=m.metadata[w];this.invertedIndex[m][o][n][w]==null&&(this.invertedIndex[m][o][n][w]=[]),this.invertedIndex[m][o][n][w].push(L)}}}},t.Builder.prototype.calculateAverageFieldLengths=function(){for(var e=Object.keys(this.fieldLengths),r=e.length,n={},i={},s=0;s<r;s++){var o=t.FieldRef.fromString(e[s]),a=o.fieldName;i[a]||(i[a]=0),i[a]+=1,n[a]||(n[a]=0),n[a]+=this.fieldLengths[o]}for(var u=Object.keys(this._fields),s=0;s<u.length;s++){var c=u[s];n[c]=n[c]/i[c]}this.averageFieldLength=n},t.Builder.prototype.createFieldVectors=function(){for(var e={},r=Object.keys(this.fieldTermFrequencies),n=r.length,i=Object.create(null),s=0;s<n;s++){for(var o=t.FieldRef.fromString(r[s]),a=o.fieldName,u=this.fieldLengths[o],c=new t.Vector,h=this.fieldTermFrequencies[o],y=Object.keys(h),g=y.length,b=this._fields[a].boost||1,m=this._documents[o.docRef].boost||1,Q=0;Q<g;Q++){var p=y[Q],d=h[p],w=this.invertedIndex[p]._index,L,k,I;i[p]===void 0?(L=t.idf(this.invertedIndex[p],this.documentCount),i[p]=L):L=i[p],k=L*((this._k1+1)*d)/(this._k1*(1-this._b+this._b*(u/this.averageFieldLength[a]))+d),k*=b,k*=m,I=Math.round(k*1e3)/1e3,c.insert(w,I)}e[o]=c}this.fieldVectors=e},t.Builder.prototype.createTokenSet=function(){this.tokenSet=t.TokenSet.fromArray(Object.keys(this.invertedIndex).sort())},t.Builder.prototype.build=function(){return this.calculateAverageFieldLengths(),this.createFieldVectors(),this.createTokenSet(),new t.Index({invertedIndex:this.invertedIndex,fieldVectors:this.fieldVectors,tokenSet:this.tokenSet,fields:Object.keys(this._fields),pipeline:this.searchPipeline})},t.Builder.prototype.use=function(e){var r=Array.prototype.slice.call(arguments,1);r.unshift(this),e.apply(this,r)},t.MatchData=function(e,r,n){for(var i=Object.create(null),s=Object.keys(n||{}),o=0;o<s.length;o++){var a=s[o];i[a]=n[a].slice()}this.metadata=Object.create(null),e!==void 0&&(this.metadata[e]=Object.create(null),this.metadata[e][r]=i)},t.MatchData.prototype.combine=function(e){for(var r=Object.keys(e.metadata),n=0;n<r.length;n++){var i=r[n],s=Object.keys(e.metadata[i]);this.metadata[i]==null&&(this.metadata[i]=Object.create(null));for(var o=0;o<s.length;o++){var a=s[o],u=Object.keys(e.metadata[i][a]);this.metadata[i][a]==null&&(this.metadata[i][a]=Object.create(null));for(var c=0;c<u.length;c++){var h=u[c];this.metadata[i][a][h]==null?this.metadata[i][a][h]=e.metadata[i][a][h]:this.metadata[i][a][h]=this.metadata[i][a][h].concat(e.metadata[i][a][h])}}}},t.MatchData.prototype.add=function(e,r,n){if(!(e in this.metadata)){this.metadata[e]=Object.create(null),this.metadata[e][r]=n;return}if(!(r in this.metadata[e])){this.metadata[e][r]=n;return}for(var i=Object.keys(n),s=0;s<i.length;s++){var o=i[s];o in this.metadata[e][r]?this.metadata[e][r][o]=this.metadata[e][r][o].concat(n[o]):this.metadata[e][r][o]=n[o]}},t.Query=function(e){this.clauses=[],this.allFields=e},t.Query.wildcard=new String("*"),t.Query.wildcard.NONE=0,t.Query.wildcard.LEADING=1,t.Query.wildcard.TRAILING=2,t.Query.presence={OPTIONAL:1,REQUIRED:2,PROHIBITED:3},t.Query.prototype.clause=function(e){return"fields"in e||(e.fields=this.allFields),"boost"in e||(e.boost=1),"usePipeline"in e||(e.usePipeline=!0),"wildcard"in e||(e.wildcard=t.Query.wildcard.NONE),e.wildcard&t.Query.wildcard.LEADING&&e.term.charAt(0)!=t.Query.wildcard&&(e.term="*"+e.term),e.wildcard&t.Query.wildcard.TRAILING&&e.term.slice(-1)!=t.Query.wildcard&&(e.term=""+e.term+"*"),"presence"in e||(e.presence=t.Query.presence.OPTIONAL),this.clauses.push(e),this},t.Query.prototype.isNegated=function(){for(var e=0;e<this.clauses.length;e++)if(this.clauses[e].presence!=t.Query.presence.PROHIBITED)return!1;return!0},t.Query.prototype.term=function(e,r){if(Array.isArray(e))return e.forEach(function(i){this.term(i,t.utils.clone(r))},this),this;var n=r||{};return n.term=e.toString(),this.clause(n),this},t.QueryParseError=function(e,r,n){this.name="QueryParseError",this.message=e,this.start=r,this.end=n},t.QueryParseError.prototype=new Error,t.QueryLexer=function(e){this.lexemes=[],this.str=e,this.length=e.length,this.pos=0,this.start=0,this.escapeCharPositions=[]},t.QueryLexer.prototype.run=function(){for(var e=t.QueryLexer.lexText;e;)e=e(this)},t.QueryLexer.prototype.sliceString=function(){for(var e=[],r=this.start,n=this.pos,i=0;i<this.escapeCharPositions.length;i++)n=this.escapeCharPositions[i],e.push(this.str.slice(r,n)),r=n+1;return e.push(this.str.slice(r,this.pos)),this.escapeCharPositions.length=0,e.join("")},t.QueryLexer.prototype.emit=function(e){this.lexemes.push({type:e,str:this.sliceString(),start:this.start,end:this.pos}),this.start=this.pos},t.QueryLexer.prototype.escapeCharacter=function(){this.escapeCharPositions.push(this.pos-1),this.pos+=1},t.QueryLexer.prototype.next=function(){if(this.pos>=this.length)return t.QueryLexer.EOS;var e=this.str.charAt(this.pos);return this.pos+=1,e},t.QueryLexer.prototype.width=function(){return this.pos-this.start},t.QueryLexer.prototype.ignore=function(){this.start==this.pos&&(this.pos+=1),this.start=this.pos},t.QueryLexer.prototype.backup=function(){this.pos-=1},t.QueryLexer.prototype.acceptDigitRun=function(){var e,r;do e=this.next(),r=e.charCodeAt(0);while(r>47&&r<58);e!=t.QueryLexer.EOS&&this.backup()},t.QueryLexer.prototype.more=function(){return this.pos<this.length},t.QueryLexer.EOS="EOS",t.QueryLexer.FIELD="FIELD",t.QueryLexer.TERM="TERM",t.QueryLexer.EDIT_DISTANCE="EDIT_DISTANCE",t.QueryLexer.BOOST="BOOST",t.QueryLexer.PRESENCE="PRESENCE",t.QueryLexer.lexField=function(e){return e.backup(),e.emit(t.QueryLexer.FIELD),e.ignore(),t.QueryLexer.lexText},t.QueryLexer.lexTerm=function(e){if(e.width()>1&&(e.backup(),e.emit(t.QueryLexer.TERM)),e.ignore(),e.more())return t.QueryLexer.lexText},t.QueryLexer.lexEditDistance=function(e){return e.ignore(),e.acceptDigitRun(),e.emit(t.QueryLexer.EDIT_DISTANCE),t.QueryLexer.lexText},t.QueryLexer.lexBoost=function(e){return e.ignore(),e.acceptDigitRun(),e.emit(t.QueryLexer.BOOST),t.QueryLexer.lexText},t.QueryLexer.lexEOS=function(e){e.width()>0&&e.emit(t.QueryLexer.TERM)},t.QueryLexer.termSeparator=t.tokenizer.separator,t.QueryLexer.lexText=function(e){for(;;){var r=e.next();if(r==t.QueryLexer.EOS)return t.QueryLexer.lexEOS;if(r.charCodeAt(0)==92){e.escapeCharacter();continue}if(r==":")return t.QueryLexer.lexField;if(r=="~")return e.backup(),e.width()>0&&e.emit(t.QueryLexer.TERM),t.QueryLexer.lexEditDistance;if(r=="^")return e.backup(),e.width()>0&&e.emit(t.QueryLexer.TERM),t.QueryLexer.lexBoost;if(r=="+"&&e.width()===1||r=="-"&&e.width()===1)return e.emit(t.QueryLexer.PRESENCE),t.QueryLexer.lexText;if(r.match(t.QueryLexer.termSeparator))return t.QueryLexer.lexTerm}},t.QueryParser=function(e,r){this.lexer=new t.QueryLexer(e),this.query=r,this.currentClause={},this.lexemeIdx=0},t.QueryParser.prototype.parse=function(){this.lexer.run(),this.lexemes=this.lexer.lexemes;for(var e=t.QueryParser.parseClause;e;)e=e(this);return this.query},t.QueryParser.prototype.peekLexeme=function(){return this.lexemes[this.lexemeIdx]},t.QueryParser.prototype.consumeLexeme=function(){var e=this.peekLexeme();return this.lexemeIdx+=1,e},t.QueryParser.prototype.nextClause=function(){var e=this.currentClause;this.query.clause(e),this.currentClause={}},t.QueryParser.parseClause=function(e){var r=e.peekLexeme();if(r!=null)switch(r.type){case t.QueryLexer.PRESENCE:return t.QueryParser.parsePresence;case t.QueryLexer.FIELD:return t.QueryParser.parseField;case t.QueryLexer.TERM:return t.QueryParser.parseTerm;default:var n="expected either a field or a term, found "+r.type;throw r.str.length>=1&&(n+=" with value '"+r.str+"'"),new t.QueryParseError(n,r.start,r.end)}},t.QueryParser.parsePresence=function(e){var r=e.consumeLexeme();if(r!=null){switch(r.str){case"-":e.currentClause.presence=t.Query.presence.PROHIBITED;break;case"+":e.currentClause.presence=t.Query.presence.REQUIRED;break;default:var n="unrecognised presence operator'"+r.str+"'";throw new t.QueryParseError(n,r.start,r.end)}var i=e.peekLexeme();if(i==null){var n="expecting term or field, found nothing";throw new t.QueryParseError(n,r.start,r.end)}switch(i.type){case t.QueryLexer.FIELD:return t.QueryParser.parseField;case t.QueryLexer.TERM:return t.QueryParser.parseTerm;default:var n="expecting term or field, found '"+i.type+"'";throw new t.QueryParseError(n,i.start,i.end)}}},t.QueryParser.parseField=function(e){var r=e.consumeLexeme();if(r!=null){if(e.query.allFields.indexOf(r.str)==-1){var n=e.query.allFields.map(function(o){return"'"+o+"'"}).join(", "),i="unrecognised field '"+r.str+"', possible fields: "+n;throw new t.QueryParseError(i,r.start,r.end)}e.currentClause.fields=[r.str];var s=e.peekLexeme();if(s==null){var i="expecting term, found nothing";throw new t.QueryParseError(i,r.start,r.end)}switch(s.type){case t.QueryLexer.TERM:return t.QueryParser.parseTerm;default:var i="expecting term, found '"+s.type+"'";throw new t.QueryParseError(i,s.start,s.end)}}},t.QueryParser.parseTerm=function(e){var r=e.consumeLexeme();if(r!=null){e.currentClause.term=r.str.toLowerCase(),r.str.indexOf("*")!=-1&&(e.currentClause.usePipeline=!1);var n=e.peekLexeme();if(n==null){e.nextClause();return}switch(n.type){case t.QueryLexer.TERM:return e.nextClause(),t.QueryParser.parseTerm;case t.QueryLexer.FIELD:return e.nextClause(),t.QueryParser.parseField;case t.QueryLexer.EDIT_DISTANCE:return t.QueryParser.parseEditDistance;case t.QueryLexer.BOOST:return t.QueryParser.parseBoost;case t.QueryLexer.PRESENCE:return e.nextClause(),t.QueryParser.parsePresence;default:var i="Unexpected lexeme type '"+n.type+"'";throw new t.QueryParseError(i,n.start,n.end)}}},t.QueryParser.parseEditDistance=function(e){var r=e.consumeLexeme();if(r!=null){var n=parseInt(r.str,10);if(isNaN(n)){var i="edit distance must be numeric";throw new t.QueryParseError(i,r.start,r.end)}e.currentClause.editDistance=n;var s=e.peekLexeme();if(s==null){e.nextClause();return}switch(s.type){case t.QueryLexer.TERM:return e.nextClause(),t.QueryParser.parseTerm;case t.QueryLexer.FIELD:return e.nextClause(),t.QueryParser.parseField;case t.QueryLexer.EDIT_DISTANCE:return t.QueryParser.parseEditDistance;case t.QueryLexer.BOOST:return t.QueryParser.parseBoost;case t.QueryLexer.PRESENCE:return e.nextClause(),t.QueryParser.parsePresence;default:var i="Unexpected lexeme type '"+s.type+"'";throw new t.QueryParseError(i,s.start,s.end)}}},t.QueryParser.parseBoost=function(e){var r=e.consumeLexeme();if(r!=null){var n=parseInt(r.str,10);if(isNaN(n)){var i="boost must be numeric";throw new t.QueryParseError(i,r.start,r.end)}e.currentClause.boost=n;var s=e.peekLexeme();if(s==null){e.nextClause();return}switch(s.type){case t.QueryLexer.TERM:return e.nextClause(),t.QueryParser.parseTerm;case t.QueryLexer.FIELD:return e.nextClause(),t.QueryParser.parseField;case t.QueryLexer.EDIT_DISTANCE:return t.QueryParser.parseEditDistance;case t.QueryLexer.BOOST:return t.QueryParser.parseBoost;case t.QueryLexer.PRESENCE:return e.nextClause(),t.QueryParser.parsePresence;default:var i="Unexpected lexeme type '"+s.type+"'";throw new t.QueryParseError(i,s.start,s.end)}}},function(e,r){typeof define=="function"&&define.amd?define(r):typeof ee=="object"?te.exports=r():e.lunr=r()}(this,function(){return t})})()});var q=K((Re,ne)=>{"use strict";/*!
- * escape-html
- * Copyright(c) 2012-2013 TJ Holowaychuk
- * Copyright(c) 2015 Andreas Lubbe
- * Copyright(c) 2015 Tiancheng "Timothy" Gu
- * MIT Licensed
- */var Le=/["'&<>]/;ne.exports=we;function we(t){var e=""+t,r=Le.exec(e);if(!r)return e;var n,i="",s=0,o=0;for(s=r.index;s<e.length;s++){switch(e.charCodeAt(s)){case 34:n="&quot;";break;case 38:n="&amp;";break;case 39:n="&#39;";break;case 60:n="&lt;";break;case 62:n="&gt;";break;default:continue}o!==s&&(i+=e.substring(o,s)),o=s+1,i+=n}return o!==s?i+e.substring(o,s):i}});var le=H(re());Object.entries||(Object.entries=function(t){let e=[];for(let r of Object.keys(t))e.push([r,t[r]]);return e});Object.values||(Object.values=function(t){let e=[];for(let r of Object.keys(t))e.push(t[r]);return e});typeof Element!="undefined"&&(Element.prototype.scrollTo||(Element.prototype.scrollTo=function(t,e){typeof t=="object"?(this.scrollLeft=t.left,this.scrollTop=t.top):(this.scrollLeft=t,this.scrollTop=e)}),Element.prototype.replaceWith||(Element.prototype.replaceWith=function(...t){let e=this.parentNode;if(e){t.length===0&&e.removeChild(this);for(let r=t.length-1;r>=0;r--){let n=t[r];typeof n!="object"?n=document.createTextNode(n):n.parentNode&&n.parentNode.removeChild(n),r?e.insertBefore(this.previousSibling,n):e.replaceChild(n,this)}}}));var ie=H(q());function se(t){let e=new Map,r=new Set;for(let n of t){let[i,s]=n.location.split("#"),o=n.location,a=n.title,u=n.tags,c=(0,ie.default)(n.text).replace(/\s+(?=[,.:;!?])/g,"").replace(/\s+/g," ");if(s){let h=e.get(i);r.has(h)?e.set(o,{location:o,title:a,text:c,parent:h}):(h.title=n.title,h.text=c,r.add(h))}else e.set(o,M({location:o,title:a,text:c},u&&{tags:u}))}return e}var oe=H(q());function ae(t,e){let r=new RegExp(t.separator,"img"),n=(i,s,o)=>`${s}<mark data-md-highlight>${o}</mark>`;return i=>{i=i.replace(/[\s*+\-:~^]+/g," ").trim();let s=new RegExp(`(^|${t.separator})(${i.replace(/[|\\{}()[\]^$+*?.-]/g,"\\$&").replace(r,"|")})`,"img");return o=>(e?(0,oe.default)(o):o).replace(s,n).replace(/<\/mark>(\s+)<mark[^>]*>/img,"$1")}}function ue(t){let e=new lunr.Query(["title","text"]);return new lunr.QueryParser(t,e).parse(),e.clauses}function ce(t,e){var i;let r=new Set(t),n={};for(let s=0;s<e.length;s++)for(let o of r)e[s].startsWith(o.term)&&(n[o.term]=!0,r.delete(o));for(let s of r)(i=lunr.stopWordFilter)!=null&&i.call(lunr,s.term)&&(n[s.term]=!1);return n}function Ee(t,e){let[r,n]=[new Set(t),new Set(e)];return[...new Set([...r].filter(i=>!n.has(i)))]}var U=class{constructor({config:e,docs:r,options:n}){this.options=n,this.documents=se(r),this.highlight=ae(e,!1),lunr.tokenizer.separator=new RegExp(e.separator),this.index=lunr(function(){e.lang.length===1&&e.lang[0]!=="en"?this.use(lunr[e.lang[0]]):e.lang.length>1&&this.use(lunr.multiLanguage(...e.lang));let i=Ee(["trimmer","stopWordFilter","stemmer"],n.pipeline);for(let s of e.lang.map(o=>o==="en"?lunr:lunr[o]))for(let o of i)this.pipeline.remove(s[o]),this.searchPipeline.remove(s[o]);this.ref("location"),this.field("title",{boost:1e3}),this.field("text"),this.field("tags",{boost:1e6,extractor:s=>{let{tags:o=[]}=s;return o.reduce((a,u)=>[...a,...lunr.tokenizer(u)],[])}});for(let s of r)this.add(s,{boost:s.boost})})}search(e){if(e)try{let r=this.highlight(e),n=ue(e).filter(o=>o.presence!==lunr.Query.presence.PROHIBITED),i=this.index.search(`${e}*`).reduce((o,{ref:a,score:u,matchData:c})=>{let h=this.documents.get(a);if(typeof h!="undefined"){let{location:y,title:g,text:b,tags:m,parent:Q}=h,p=ce(n,Object.keys(c.metadata)),d=+!Q+ +Object.values(p).every(w=>w);o.push(Z(M({location:y,title:r(g),text:r(b)},m&&{tags:m.map(r)}),{score:u*(1+d),terms:p}))}return o},[]).sort((o,a)=>a.score-o.score).reduce((o,a)=>{let u=this.documents.get(a.location);if(typeof u!="undefined"){let c="parent"in u?u.parent.location:u.location;o.set(c,[...o.get(c)||[],a])}return o},new Map),s;if(this.options.suggestions){let o=this.index.query(a=>{for(let u of n)a.term(u.term,{fields:["title"],presence:lunr.Query.presence.REQUIRED,wildcard:lunr.Query.wildcard.TRAILING})});s=o.length?Object.keys(o[0].matchData.metadata):[]}return M({items:[...i.values()]},typeof s!="undefined"&&{suggestions:s})}catch(r){console.warn(`Invalid query: ${e} \u2013 see https://bit.ly/2s3ChXG`)}return{items:[]}}};var Y;function ke(t){return z(this,null,function*(){let e="../lunr";if(typeof parent!="undefined"&&"IFrameWorker"in parent){let n=document.querySelector("script[src]"),[i]=n.src.split("/worker");e=e.replace("..",i)}let r=[];for(let n of t.lang){switch(n){case"ja":r.push(`${e}/tinyseg.js`);break;case"hi":case"th":r.push(`${e}/wordcut.js`);break}n!=="en"&&r.push(`${e}/min/lunr.${n}.min.js`)}t.lang.length>1&&r.push(`${e}/min/lunr.multi.min.js`),r.length&&(yield importScripts(`${e}/min/lunr.stemmer.support.min.js`,...r))})}function Te(t){return z(this,null,function*(){switch(t.type){case 0:return yield ke(t.data.config),Y=new U(t.data),{type:1};case 2:return{type:3,data:Y?Y.search(t.data):{items:[]}};default:throw new TypeError("Invalid message type")}})}self.lunr=le.default;addEventListener("message",t=>z(void 0,null,function*(){postMessage(yield Te(t.data))}));})();
-//# sourceMappingURL=search.b97dbffb.min.js.map
-
diff --git a/docs/assets/javascripts/workers/search.b97dbffb.min.js.map b/docs/assets/javascripts/workers/search.b97dbffb.min.js.map
deleted file mode 100644
index 5764b1b3..00000000
--- a/docs/assets/javascripts/workers/search.b97dbffb.min.js.map
+++ /dev/null
@@ -1,8 +0,0 @@
-{
-  "version": 3,
-  "sources": ["node_modules/lunr/lunr.js", "node_modules/escape-html/index.js", "src/assets/javascripts/integrations/search/worker/main/index.ts", "src/assets/javascripts/polyfills/index.ts", "src/assets/javascripts/integrations/search/document/index.ts", "src/assets/javascripts/integrations/search/highlighter/index.ts", "src/assets/javascripts/integrations/search/query/_/index.ts", "src/assets/javascripts/integrations/search/_/index.ts"],
-  "sourceRoot": "../../../..",
-  "sourcesContent": ["/**\n * lunr - http://lunrjs.com - A bit like Solr, but much smaller and not as bright - 2.3.9\n * Copyright (C) 2020 Oliver Nightingale\n * @license MIT\n */\n\n;(function(){\n\n/**\n * A convenience function for configuring and constructing\n * a new lunr Index.\n *\n * A lunr.Builder instance is created and the pipeline setup\n * with a trimmer, stop word filter and stemmer.\n *\n * This builder object is yielded to the configuration function\n * that is passed as a parameter, allowing the list of fields\n * and other builder parameters to be customised.\n *\n * All documents _must_ be added within the passed config function.\n *\n * @example\n * var idx = lunr(function () {\n *   this.field('title')\n *   this.field('body')\n *   this.ref('id')\n *\n *   documents.forEach(function (doc) {\n *     this.add(doc)\n *   }, this)\n * })\n *\n * @see {@link lunr.Builder}\n * @see {@link lunr.Pipeline}\n * @see {@link lunr.trimmer}\n * @see {@link lunr.stopWordFilter}\n * @see {@link lunr.stemmer}\n * @namespace {function} lunr\n */\nvar lunr = function (config) {\n  var builder = new lunr.Builder\n\n  builder.pipeline.add(\n    lunr.trimmer,\n    lunr.stopWordFilter,\n    lunr.stemmer\n  )\n\n  builder.searchPipeline.add(\n    lunr.stemmer\n  )\n\n  config.call(builder, builder)\n  return builder.build()\n}\n\nlunr.version = \"2.3.9\"\n/*!\n * lunr.utils\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * A namespace containing utils for the rest of the lunr library\n * @namespace lunr.utils\n */\nlunr.utils = {}\n\n/**\n * Print a warning message to the console.\n *\n * @param {String} message The message to be printed.\n * @memberOf lunr.utils\n * @function\n */\nlunr.utils.warn = (function (global) {\n  /* eslint-disable no-console */\n  return function (message) {\n    if (global.console && console.warn) {\n      console.warn(message)\n    }\n  }\n  /* eslint-enable no-console */\n})(this)\n\n/**\n * Convert an object to a string.\n *\n * In the case of `null` and `undefined` the function returns\n * the empty string, in all other cases the result of calling\n * `toString` on the passed object is returned.\n *\n * @param {Any} obj The object to convert to a string.\n * @return {String} string representation of the passed object.\n * @memberOf lunr.utils\n */\nlunr.utils.asString = function (obj) {\n  if (obj === void 0 || obj === null) {\n    return \"\"\n  } else {\n    return obj.toString()\n  }\n}\n\n/**\n * Clones an object.\n *\n * Will create a copy of an existing object such that any mutations\n * on the copy cannot affect the original.\n *\n * Only shallow objects are supported, passing a nested object to this\n * function will cause a TypeError.\n *\n * Objects with primitives, and arrays of primitives are supported.\n *\n * @param {Object} obj The object to clone.\n * @return {Object} a clone of the passed object.\n * @throws {TypeError} when a nested object is passed.\n * @memberOf Utils\n */\nlunr.utils.clone = function (obj) {\n  if (obj === null || obj === undefined) {\n    return obj\n  }\n\n  var clone = Object.create(null),\n      keys = Object.keys(obj)\n\n  for (var i = 0; i < keys.length; i++) {\n    var key = keys[i],\n        val = obj[key]\n\n    if (Array.isArray(val)) {\n      clone[key] = val.slice()\n      continue\n    }\n\n    if (typeof val === 'string' ||\n        typeof val === 'number' ||\n        typeof val === 'boolean') {\n      clone[key] = val\n      continue\n    }\n\n    throw new TypeError(\"clone is not deep and does not support nested objects\")\n  }\n\n  return clone\n}\nlunr.FieldRef = function (docRef, fieldName, stringValue) {\n  this.docRef = docRef\n  this.fieldName = fieldName\n  this._stringValue = stringValue\n}\n\nlunr.FieldRef.joiner = \"/\"\n\nlunr.FieldRef.fromString = function (s) {\n  var n = s.indexOf(lunr.FieldRef.joiner)\n\n  if (n === -1) {\n    throw \"malformed field ref string\"\n  }\n\n  var fieldRef = s.slice(0, n),\n      docRef = s.slice(n + 1)\n\n  return new lunr.FieldRef (docRef, fieldRef, s)\n}\n\nlunr.FieldRef.prototype.toString = function () {\n  if (this._stringValue == undefined) {\n    this._stringValue = this.fieldName + lunr.FieldRef.joiner + this.docRef\n  }\n\n  return this._stringValue\n}\n/*!\n * lunr.Set\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * A lunr set.\n *\n * @constructor\n */\nlunr.Set = function (elements) {\n  this.elements = Object.create(null)\n\n  if (elements) {\n    this.length = elements.length\n\n    for (var i = 0; i < this.length; i++) {\n      this.elements[elements[i]] = true\n    }\n  } else {\n    this.length = 0\n  }\n}\n\n/**\n * A complete set that contains all elements.\n *\n * @static\n * @readonly\n * @type {lunr.Set}\n */\nlunr.Set.complete = {\n  intersect: function (other) {\n    return other\n  },\n\n  union: function () {\n    return this\n  },\n\n  contains: function () {\n    return true\n  }\n}\n\n/**\n * An empty set that contains no elements.\n *\n * @static\n * @readonly\n * @type {lunr.Set}\n */\nlunr.Set.empty = {\n  intersect: function () {\n    return this\n  },\n\n  union: function (other) {\n    return other\n  },\n\n  contains: function () {\n    return false\n  }\n}\n\n/**\n * Returns true if this set contains the specified object.\n *\n * @param {object} object - Object whose presence in this set is to be tested.\n * @returns {boolean} - True if this set contains the specified object.\n */\nlunr.Set.prototype.contains = function (object) {\n  return !!this.elements[object]\n}\n\n/**\n * Returns a new set containing only the elements that are present in both\n * this set and the specified set.\n *\n * @param {lunr.Set} other - set to intersect with this set.\n * @returns {lunr.Set} a new set that is the intersection of this and the specified set.\n */\n\nlunr.Set.prototype.intersect = function (other) {\n  var a, b, elements, intersection = []\n\n  if (other === lunr.Set.complete) {\n    return this\n  }\n\n  if (other === lunr.Set.empty) {\n    return other\n  }\n\n  if (this.length < other.length) {\n    a = this\n    b = other\n  } else {\n    a = other\n    b = this\n  }\n\n  elements = Object.keys(a.elements)\n\n  for (var i = 0; i < elements.length; i++) {\n    var element = elements[i]\n    if (element in b.elements) {\n      intersection.push(element)\n    }\n  }\n\n  return new lunr.Set (intersection)\n}\n\n/**\n * Returns a new set combining the elements of this and the specified set.\n *\n * @param {lunr.Set} other - set to union with this set.\n * @return {lunr.Set} a new set that is the union of this and the specified set.\n */\n\nlunr.Set.prototype.union = function (other) {\n  if (other === lunr.Set.complete) {\n    return lunr.Set.complete\n  }\n\n  if (other === lunr.Set.empty) {\n    return this\n  }\n\n  return new lunr.Set(Object.keys(this.elements).concat(Object.keys(other.elements)))\n}\n/**\n * A function to calculate the inverse document frequency for\n * a posting. This is shared between the builder and the index\n *\n * @private\n * @param {object} posting - The posting for a given term\n * @param {number} documentCount - The total number of documents.\n */\nlunr.idf = function (posting, documentCount) {\n  var documentsWithTerm = 0\n\n  for (var fieldName in posting) {\n    if (fieldName == '_index') continue // Ignore the term index, its not a field\n    documentsWithTerm += Object.keys(posting[fieldName]).length\n  }\n\n  var x = (documentCount - documentsWithTerm + 0.5) / (documentsWithTerm + 0.5)\n\n  return Math.log(1 + Math.abs(x))\n}\n\n/**\n * A token wraps a string representation of a token\n * as it is passed through the text processing pipeline.\n *\n * @constructor\n * @param {string} [str=''] - The string token being wrapped.\n * @param {object} [metadata={}] - Metadata associated with this token.\n */\nlunr.Token = function (str, metadata) {\n  this.str = str || \"\"\n  this.metadata = metadata || {}\n}\n\n/**\n * Returns the token string that is being wrapped by this object.\n *\n * @returns {string}\n */\nlunr.Token.prototype.toString = function () {\n  return this.str\n}\n\n/**\n * A token update function is used when updating or optionally\n * when cloning a token.\n *\n * @callback lunr.Token~updateFunction\n * @param {string} str - The string representation of the token.\n * @param {Object} metadata - All metadata associated with this token.\n */\n\n/**\n * Applies the given function to the wrapped string token.\n *\n * @example\n * token.update(function (str, metadata) {\n *   return str.toUpperCase()\n * })\n *\n * @param {lunr.Token~updateFunction} fn - A function to apply to the token string.\n * @returns {lunr.Token}\n */\nlunr.Token.prototype.update = function (fn) {\n  this.str = fn(this.str, this.metadata)\n  return this\n}\n\n/**\n * Creates a clone of this token. Optionally a function can be\n * applied to the cloned token.\n *\n * @param {lunr.Token~updateFunction} [fn] - An optional function to apply to the cloned token.\n * @returns {lunr.Token}\n */\nlunr.Token.prototype.clone = function (fn) {\n  fn = fn || function (s) { return s }\n  return new lunr.Token (fn(this.str, this.metadata), this.metadata)\n}\n/*!\n * lunr.tokenizer\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * A function for splitting a string into tokens ready to be inserted into\n * the search index. Uses `lunr.tokenizer.separator` to split strings, change\n * the value of this property to change how strings are split into tokens.\n *\n * This tokenizer will convert its parameter to a string by calling `toString` and\n * then will split this string on the character in `lunr.tokenizer.separator`.\n * Arrays will have their elements converted to strings and wrapped in a lunr.Token.\n *\n * Optional metadata can be passed to the tokenizer, this metadata will be cloned and\n * added as metadata to every token that is created from the object to be tokenized.\n *\n * @static\n * @param {?(string|object|object[])} obj - The object to convert into tokens\n * @param {?object} metadata - Optional metadata to associate with every token\n * @returns {lunr.Token[]}\n * @see {@link lunr.Pipeline}\n */\nlunr.tokenizer = function (obj, metadata) {\n  if (obj == null || obj == undefined) {\n    return []\n  }\n\n  if (Array.isArray(obj)) {\n    return obj.map(function (t) {\n      return new lunr.Token(\n        lunr.utils.asString(t).toLowerCase(),\n        lunr.utils.clone(metadata)\n      )\n    })\n  }\n\n  var str = obj.toString().toLowerCase(),\n      len = str.length,\n      tokens = []\n\n  for (var sliceEnd = 0, sliceStart = 0; sliceEnd <= len; sliceEnd++) {\n    var char = str.charAt(sliceEnd),\n        sliceLength = sliceEnd - sliceStart\n\n    if ((char.match(lunr.tokenizer.separator) || sliceEnd == len)) {\n\n      if (sliceLength > 0) {\n        var tokenMetadata = lunr.utils.clone(metadata) || {}\n        tokenMetadata[\"position\"] = [sliceStart, sliceLength]\n        tokenMetadata[\"index\"] = tokens.length\n\n        tokens.push(\n          new lunr.Token (\n            str.slice(sliceStart, sliceEnd),\n            tokenMetadata\n          )\n        )\n      }\n\n      sliceStart = sliceEnd + 1\n    }\n\n  }\n\n  return tokens\n}\n\n/**\n * The separator used to split a string into tokens. Override this property to change the behaviour of\n * `lunr.tokenizer` behaviour when tokenizing strings. By default this splits on whitespace and hyphens.\n *\n * @static\n * @see lunr.tokenizer\n */\nlunr.tokenizer.separator = /[\\s\\-]+/\n/*!\n * lunr.Pipeline\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * lunr.Pipelines maintain an ordered list of functions to be applied to all\n * tokens in documents entering the search index and queries being ran against\n * the index.\n *\n * An instance of lunr.Index created with the lunr shortcut will contain a\n * pipeline with a stop word filter and an English language stemmer. Extra\n * functions can be added before or after either of these functions or these\n * default functions can be removed.\n *\n * When run the pipeline will call each function in turn, passing a token, the\n * index of that token in the original list of all tokens and finally a list of\n * all the original tokens.\n *\n * The output of functions in the pipeline will be passed to the next function\n * in the pipeline. To exclude a token from entering the index the function\n * should return undefined, the rest of the pipeline will not be called with\n * this token.\n *\n * For serialisation of pipelines to work, all functions used in an instance of\n * a pipeline should be registered with lunr.Pipeline. Registered functions can\n * then be loaded. If trying to load a serialised pipeline that uses functions\n * that are not registered an error will be thrown.\n *\n * If not planning on serialising the pipeline then registering pipeline functions\n * is not necessary.\n *\n * @constructor\n */\nlunr.Pipeline = function () {\n  this._stack = []\n}\n\nlunr.Pipeline.registeredFunctions = Object.create(null)\n\n/**\n * A pipeline function maps lunr.Token to lunr.Token. A lunr.Token contains the token\n * string as well as all known metadata. A pipeline function can mutate the token string\n * or mutate (or add) metadata for a given token.\n *\n * A pipeline function can indicate that the passed token should be discarded by returning\n * null, undefined or an empty string. This token will not be passed to any downstream pipeline\n * functions and will not be added to the index.\n *\n * Multiple tokens can be returned by returning an array of tokens. Each token will be passed\n * to any downstream pipeline functions and all will returned tokens will be added to the index.\n *\n * Any number of pipeline functions may be chained together using a lunr.Pipeline.\n *\n * @interface lunr.PipelineFunction\n * @param {lunr.Token} token - A token from the document being processed.\n * @param {number} i - The index of this token in the complete list of tokens for this document/field.\n * @param {lunr.Token[]} tokens - All tokens for this document/field.\n * @returns {(?lunr.Token|lunr.Token[])}\n */\n\n/**\n * Register a function with the pipeline.\n *\n * Functions that are used in the pipeline should be registered if the pipeline\n * needs to be serialised, or a serialised pipeline needs to be loaded.\n *\n * Registering a function does not add it to a pipeline, functions must still be\n * added to instances of the pipeline for them to be used when running a pipeline.\n *\n * @param {lunr.PipelineFunction} fn - The function to check for.\n * @param {String} label - The label to register this function with\n */\nlunr.Pipeline.registerFunction = function (fn, label) {\n  if (label in this.registeredFunctions) {\n    lunr.utils.warn('Overwriting existing registered function: ' + label)\n  }\n\n  fn.label = label\n  lunr.Pipeline.registeredFunctions[fn.label] = fn\n}\n\n/**\n * Warns if the function is not registered as a Pipeline function.\n *\n * @param {lunr.PipelineFunction} fn - The function to check for.\n * @private\n */\nlunr.Pipeline.warnIfFunctionNotRegistered = function (fn) {\n  var isRegistered = fn.label && (fn.label in this.registeredFunctions)\n\n  if (!isRegistered) {\n    lunr.utils.warn('Function is not registered with pipeline. This may cause problems when serialising the index.\\n', fn)\n  }\n}\n\n/**\n * Loads a previously serialised pipeline.\n *\n * All functions to be loaded must already be registered with lunr.Pipeline.\n * If any function from the serialised data has not been registered then an\n * error will be thrown.\n *\n * @param {Object} serialised - The serialised pipeline to load.\n * @returns {lunr.Pipeline}\n */\nlunr.Pipeline.load = function (serialised) {\n  var pipeline = new lunr.Pipeline\n\n  serialised.forEach(function (fnName) {\n    var fn = lunr.Pipeline.registeredFunctions[fnName]\n\n    if (fn) {\n      pipeline.add(fn)\n    } else {\n      throw new Error('Cannot load unregistered function: ' + fnName)\n    }\n  })\n\n  return pipeline\n}\n\n/**\n * Adds new functions to the end of the pipeline.\n *\n * Logs a warning if the function has not been registered.\n *\n * @param {lunr.PipelineFunction[]} functions - Any number of functions to add to the pipeline.\n */\nlunr.Pipeline.prototype.add = function () {\n  var fns = Array.prototype.slice.call(arguments)\n\n  fns.forEach(function (fn) {\n    lunr.Pipeline.warnIfFunctionNotRegistered(fn)\n    this._stack.push(fn)\n  }, this)\n}\n\n/**\n * Adds a single function after a function that already exists in the\n * pipeline.\n *\n * Logs a warning if the function has not been registered.\n *\n * @param {lunr.PipelineFunction} existingFn - A function that already exists in the pipeline.\n * @param {lunr.PipelineFunction} newFn - The new function to add to the pipeline.\n */\nlunr.Pipeline.prototype.after = function (existingFn, newFn) {\n  lunr.Pipeline.warnIfFunctionNotRegistered(newFn)\n\n  var pos = this._stack.indexOf(existingFn)\n  if (pos == -1) {\n    throw new Error('Cannot find existingFn')\n  }\n\n  pos = pos + 1\n  this._stack.splice(pos, 0, newFn)\n}\n\n/**\n * Adds a single function before a function that already exists in the\n * pipeline.\n *\n * Logs a warning if the function has not been registered.\n *\n * @param {lunr.PipelineFunction} existingFn - A function that already exists in the pipeline.\n * @param {lunr.PipelineFunction} newFn - The new function to add to the pipeline.\n */\nlunr.Pipeline.prototype.before = function (existingFn, newFn) {\n  lunr.Pipeline.warnIfFunctionNotRegistered(newFn)\n\n  var pos = this._stack.indexOf(existingFn)\n  if (pos == -1) {\n    throw new Error('Cannot find existingFn')\n  }\n\n  this._stack.splice(pos, 0, newFn)\n}\n\n/**\n * Removes a function from the pipeline.\n *\n * @param {lunr.PipelineFunction} fn The function to remove from the pipeline.\n */\nlunr.Pipeline.prototype.remove = function (fn) {\n  var pos = this._stack.indexOf(fn)\n  if (pos == -1) {\n    return\n  }\n\n  this._stack.splice(pos, 1)\n}\n\n/**\n * Runs the current list of functions that make up the pipeline against the\n * passed tokens.\n *\n * @param {Array} tokens The tokens to run through the pipeline.\n * @returns {Array}\n */\nlunr.Pipeline.prototype.run = function (tokens) {\n  var stackLength = this._stack.length\n\n  for (var i = 0; i < stackLength; i++) {\n    var fn = this._stack[i]\n    var memo = []\n\n    for (var j = 0; j < tokens.length; j++) {\n      var result = fn(tokens[j], j, tokens)\n\n      if (result === null || result === void 0 || result === '') continue\n\n      if (Array.isArray(result)) {\n        for (var k = 0; k < result.length; k++) {\n          memo.push(result[k])\n        }\n      } else {\n        memo.push(result)\n      }\n    }\n\n    tokens = memo\n  }\n\n  return tokens\n}\n\n/**\n * Convenience method for passing a string through a pipeline and getting\n * strings out. This method takes care of wrapping the passed string in a\n * token and mapping the resulting tokens back to strings.\n *\n * @param {string} str - The string to pass through the pipeline.\n * @param {?object} metadata - Optional metadata to associate with the token\n * passed to the pipeline.\n * @returns {string[]}\n */\nlunr.Pipeline.prototype.runString = function (str, metadata) {\n  var token = new lunr.Token (str, metadata)\n\n  return this.run([token]).map(function (t) {\n    return t.toString()\n  })\n}\n\n/**\n * Resets the pipeline by removing any existing processors.\n *\n */\nlunr.Pipeline.prototype.reset = function () {\n  this._stack = []\n}\n\n/**\n * Returns a representation of the pipeline ready for serialisation.\n *\n * Logs a warning if the function has not been registered.\n *\n * @returns {Array}\n */\nlunr.Pipeline.prototype.toJSON = function () {\n  return this._stack.map(function (fn) {\n    lunr.Pipeline.warnIfFunctionNotRegistered(fn)\n\n    return fn.label\n  })\n}\n/*!\n * lunr.Vector\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * A vector is used to construct the vector space of documents and queries. These\n * vectors support operations to determine the similarity between two documents or\n * a document and a query.\n *\n * Normally no parameters are required for initializing a vector, but in the case of\n * loading a previously dumped vector the raw elements can be provided to the constructor.\n *\n * For performance reasons vectors are implemented with a flat array, where an elements\n * index is immediately followed by its value. E.g. [index, value, index, value]. This\n * allows the underlying array to be as sparse as possible and still offer decent\n * performance when being used for vector calculations.\n *\n * @constructor\n * @param {Number[]} [elements] - The flat list of element index and element value pairs.\n */\nlunr.Vector = function (elements) {\n  this._magnitude = 0\n  this.elements = elements || []\n}\n\n\n/**\n * Calculates the position within the vector to insert a given index.\n *\n * This is used internally by insert and upsert. If there are duplicate indexes then\n * the position is returned as if the value for that index were to be updated, but it\n * is the callers responsibility to check whether there is a duplicate at that index\n *\n * @param {Number} insertIdx - The index at which the element should be inserted.\n * @returns {Number}\n */\nlunr.Vector.prototype.positionForIndex = function (index) {\n  // For an empty vector the tuple can be inserted at the beginning\n  if (this.elements.length == 0) {\n    return 0\n  }\n\n  var start = 0,\n      end = this.elements.length / 2,\n      sliceLength = end - start,\n      pivotPoint = Math.floor(sliceLength / 2),\n      pivotIndex = this.elements[pivotPoint * 2]\n\n  while (sliceLength > 1) {\n    if (pivotIndex < index) {\n      start = pivotPoint\n    }\n\n    if (pivotIndex > index) {\n      end = pivotPoint\n    }\n\n    if (pivotIndex == index) {\n      break\n    }\n\n    sliceLength = end - start\n    pivotPoint = start + Math.floor(sliceLength / 2)\n    pivotIndex = this.elements[pivotPoint * 2]\n  }\n\n  if (pivotIndex == index) {\n    return pivotPoint * 2\n  }\n\n  if (pivotIndex > index) {\n    return pivotPoint * 2\n  }\n\n  if (pivotIndex < index) {\n    return (pivotPoint + 1) * 2\n  }\n}\n\n/**\n * Inserts an element at an index within the vector.\n *\n * Does not allow duplicates, will throw an error if there is already an entry\n * for this index.\n *\n * @param {Number} insertIdx - The index at which the element should be inserted.\n * @param {Number} val - The value to be inserted into the vector.\n */\nlunr.Vector.prototype.insert = function (insertIdx, val) {\n  this.upsert(insertIdx, val, function () {\n    throw \"duplicate index\"\n  })\n}\n\n/**\n * Inserts or updates an existing index within the vector.\n *\n * @param {Number} insertIdx - The index at which the element should be inserted.\n * @param {Number} val - The value to be inserted into the vector.\n * @param {function} fn - A function that is called for updates, the existing value and the\n * requested value are passed as arguments\n */\nlunr.Vector.prototype.upsert = function (insertIdx, val, fn) {\n  this._magnitude = 0\n  var position = this.positionForIndex(insertIdx)\n\n  if (this.elements[position] == insertIdx) {\n    this.elements[position + 1] = fn(this.elements[position + 1], val)\n  } else {\n    this.elements.splice(position, 0, insertIdx, val)\n  }\n}\n\n/**\n * Calculates the magnitude of this vector.\n *\n * @returns {Number}\n */\nlunr.Vector.prototype.magnitude = function () {\n  if (this._magnitude) return this._magnitude\n\n  var sumOfSquares = 0,\n      elementsLength = this.elements.length\n\n  for (var i = 1; i < elementsLength; i += 2) {\n    var val = this.elements[i]\n    sumOfSquares += val * val\n  }\n\n  return this._magnitude = Math.sqrt(sumOfSquares)\n}\n\n/**\n * Calculates the dot product of this vector and another vector.\n *\n * @param {lunr.Vector} otherVector - The vector to compute the dot product with.\n * @returns {Number}\n */\nlunr.Vector.prototype.dot = function (otherVector) {\n  var dotProduct = 0,\n      a = this.elements, b = otherVector.elements,\n      aLen = a.length, bLen = b.length,\n      aVal = 0, bVal = 0,\n      i = 0, j = 0\n\n  while (i < aLen && j < bLen) {\n    aVal = a[i], bVal = b[j]\n    if (aVal < bVal) {\n      i += 2\n    } else if (aVal > bVal) {\n      j += 2\n    } else if (aVal == bVal) {\n      dotProduct += a[i + 1] * b[j + 1]\n      i += 2\n      j += 2\n    }\n  }\n\n  return dotProduct\n}\n\n/**\n * Calculates the similarity between this vector and another vector.\n *\n * @param {lunr.Vector} otherVector - The other vector to calculate the\n * similarity with.\n * @returns {Number}\n */\nlunr.Vector.prototype.similarity = function (otherVector) {\n  return this.dot(otherVector) / this.magnitude() || 0\n}\n\n/**\n * Converts the vector to an array of the elements within the vector.\n *\n * @returns {Number[]}\n */\nlunr.Vector.prototype.toArray = function () {\n  var output = new Array (this.elements.length / 2)\n\n  for (var i = 1, j = 0; i < this.elements.length; i += 2, j++) {\n    output[j] = this.elements[i]\n  }\n\n  return output\n}\n\n/**\n * A JSON serializable representation of the vector.\n *\n * @returns {Number[]}\n */\nlunr.Vector.prototype.toJSON = function () {\n  return this.elements\n}\n/* eslint-disable */\n/*!\n * lunr.stemmer\n * Copyright (C) 2020 Oliver Nightingale\n * Includes code from - http://tartarus.org/~martin/PorterStemmer/js.txt\n */\n\n/**\n * lunr.stemmer is an english language stemmer, this is a JavaScript\n * implementation of the PorterStemmer taken from http://tartarus.org/~martin\n *\n * @static\n * @implements {lunr.PipelineFunction}\n * @param {lunr.Token} token - The string to stem\n * @returns {lunr.Token}\n * @see {@link lunr.Pipeline}\n * @function\n */\nlunr.stemmer = (function(){\n  var step2list = {\n      \"ational\" : \"ate\",\n      \"tional\" : \"tion\",\n      \"enci\" : \"ence\",\n      \"anci\" : \"ance\",\n      \"izer\" : \"ize\",\n      \"bli\" : \"ble\",\n      \"alli\" : \"al\",\n      \"entli\" : \"ent\",\n      \"eli\" : \"e\",\n      \"ousli\" : \"ous\",\n      \"ization\" : \"ize\",\n      \"ation\" : \"ate\",\n      \"ator\" : \"ate\",\n      \"alism\" : \"al\",\n      \"iveness\" : \"ive\",\n      \"fulness\" : \"ful\",\n      \"ousness\" : \"ous\",\n      \"aliti\" : \"al\",\n      \"iviti\" : \"ive\",\n      \"biliti\" : \"ble\",\n      \"logi\" : \"log\"\n    },\n\n    step3list = {\n      \"icate\" : \"ic\",\n      \"ative\" : \"\",\n      \"alize\" : \"al\",\n      \"iciti\" : \"ic\",\n      \"ical\" : \"ic\",\n      \"ful\" : \"\",\n      \"ness\" : \"\"\n    },\n\n    c = \"[^aeiou]\",          // consonant\n    v = \"[aeiouy]\",          // vowel\n    C = c + \"[^aeiouy]*\",    // consonant sequence\n    V = v + \"[aeiou]*\",      // vowel sequence\n\n    mgr0 = \"^(\" + C + \")?\" + V + C,               // [C]VC... is m>0\n    meq1 = \"^(\" + C + \")?\" + V + C + \"(\" + V + \")?$\",  // [C]VC[V] is m=1\n    mgr1 = \"^(\" + C + \")?\" + V + C + V + C,       // [C]VCVC... is m>1\n    s_v = \"^(\" + C + \")?\" + v;                   // vowel in stem\n\n  var re_mgr0 = new RegExp(mgr0);\n  var re_mgr1 = new RegExp(mgr1);\n  var re_meq1 = new RegExp(meq1);\n  var re_s_v = new RegExp(s_v);\n\n  var re_1a = /^(.+?)(ss|i)es$/;\n  var re2_1a = /^(.+?)([^s])s$/;\n  var re_1b = /^(.+?)eed$/;\n  var re2_1b = /^(.+?)(ed|ing)$/;\n  var re_1b_2 = /.$/;\n  var re2_1b_2 = /(at|bl|iz)$/;\n  var re3_1b_2 = new RegExp(\"([^aeiouylsz])\\\\1$\");\n  var re4_1b_2 = new RegExp(\"^\" + C + v + \"[^aeiouwxy]$\");\n\n  var re_1c = /^(.+?[^aeiou])y$/;\n  var re_2 = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/;\n\n  var re_3 = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/;\n\n  var re_4 = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/;\n  var re2_4 = /^(.+?)(s|t)(ion)$/;\n\n  var re_5 = /^(.+?)e$/;\n  var re_5_1 = /ll$/;\n  var re3_5 = new RegExp(\"^\" + C + v + \"[^aeiouwxy]$\");\n\n  var porterStemmer = function porterStemmer(w) {\n    var stem,\n      suffix,\n      firstch,\n      re,\n      re2,\n      re3,\n      re4;\n\n    if (w.length < 3) { return w; }\n\n    firstch = w.substr(0,1);\n    if (firstch == \"y\") {\n      w = firstch.toUpperCase() + w.substr(1);\n    }\n\n    // Step 1a\n    re = re_1a\n    re2 = re2_1a;\n\n    if (re.test(w)) { w = w.replace(re,\"$1$2\"); }\n    else if (re2.test(w)) { w = w.replace(re2,\"$1$2\"); }\n\n    // Step 1b\n    re = re_1b;\n    re2 = re2_1b;\n    if (re.test(w)) {\n      var fp = re.exec(w);\n      re = re_mgr0;\n      if (re.test(fp[1])) {\n        re = re_1b_2;\n        w = w.replace(re,\"\");\n      }\n    } else if (re2.test(w)) {\n      var fp = re2.exec(w);\n      stem = fp[1];\n      re2 = re_s_v;\n      if (re2.test(stem)) {\n        w = stem;\n        re2 = re2_1b_2;\n        re3 = re3_1b_2;\n        re4 = re4_1b_2;\n        if (re2.test(w)) { w = w + \"e\"; }\n        else if (re3.test(w)) { re = re_1b_2; w = w.replace(re,\"\"); }\n        else if (re4.test(w)) { w = w + \"e\"; }\n      }\n    }\n\n    // Step 1c - replace suffix y or Y by i if preceded by a non-vowel which is not the first letter of the word (so cry -> cri, by -> by, say -> say)\n    re = re_1c;\n    if (re.test(w)) {\n      var fp = re.exec(w);\n      stem = fp[1];\n      w = stem + \"i\";\n    }\n\n    // Step 2\n    re = re_2;\n    if (re.test(w)) {\n      var fp = re.exec(w);\n      stem = fp[1];\n      suffix = fp[2];\n      re = re_mgr0;\n      if (re.test(stem)) {\n        w = stem + step2list[suffix];\n      }\n    }\n\n    // Step 3\n    re = re_3;\n    if (re.test(w)) {\n      var fp = re.exec(w);\n      stem = fp[1];\n      suffix = fp[2];\n      re = re_mgr0;\n      if (re.test(stem)) {\n        w = stem + step3list[suffix];\n      }\n    }\n\n    // Step 4\n    re = re_4;\n    re2 = re2_4;\n    if (re.test(w)) {\n      var fp = re.exec(w);\n      stem = fp[1];\n      re = re_mgr1;\n      if (re.test(stem)) {\n        w = stem;\n      }\n    } else if (re2.test(w)) {\n      var fp = re2.exec(w);\n      stem = fp[1] + fp[2];\n      re2 = re_mgr1;\n      if (re2.test(stem)) {\n        w = stem;\n      }\n    }\n\n    // Step 5\n    re = re_5;\n    if (re.test(w)) {\n      var fp = re.exec(w);\n      stem = fp[1];\n      re = re_mgr1;\n      re2 = re_meq1;\n      re3 = re3_5;\n      if (re.test(stem) || (re2.test(stem) && !(re3.test(stem)))) {\n        w = stem;\n      }\n    }\n\n    re = re_5_1;\n    re2 = re_mgr1;\n    if (re.test(w) && re2.test(w)) {\n      re = re_1b_2;\n      w = w.replace(re,\"\");\n    }\n\n    // and turn initial Y back to y\n\n    if (firstch == \"y\") {\n      w = firstch.toLowerCase() + w.substr(1);\n    }\n\n    return w;\n  };\n\n  return function (token) {\n    return token.update(porterStemmer);\n  }\n})();\n\nlunr.Pipeline.registerFunction(lunr.stemmer, 'stemmer')\n/*!\n * lunr.stopWordFilter\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * lunr.generateStopWordFilter builds a stopWordFilter function from the provided\n * list of stop words.\n *\n * The built in lunr.stopWordFilter is built using this generator and can be used\n * to generate custom stopWordFilters for applications or non English languages.\n *\n * @function\n * @param {Array} token The token to pass through the filter\n * @returns {lunr.PipelineFunction}\n * @see lunr.Pipeline\n * @see lunr.stopWordFilter\n */\nlunr.generateStopWordFilter = function (stopWords) {\n  var words = stopWords.reduce(function (memo, stopWord) {\n    memo[stopWord] = stopWord\n    return memo\n  }, {})\n\n  return function (token) {\n    if (token && words[token.toString()] !== token.toString()) return token\n  }\n}\n\n/**\n * lunr.stopWordFilter is an English language stop word list filter, any words\n * contained in the list will not be passed through the filter.\n *\n * This is intended to be used in the Pipeline. If the token does not pass the\n * filter then undefined will be returned.\n *\n * @function\n * @implements {lunr.PipelineFunction}\n * @params {lunr.Token} token - A token to check for being a stop word.\n * @returns {lunr.Token}\n * @see {@link lunr.Pipeline}\n */\nlunr.stopWordFilter = lunr.generateStopWordFilter([\n  'a',\n  'able',\n  'about',\n  'across',\n  'after',\n  'all',\n  'almost',\n  'also',\n  'am',\n  'among',\n  'an',\n  'and',\n  'any',\n  'are',\n  'as',\n  'at',\n  'be',\n  'because',\n  'been',\n  'but',\n  'by',\n  'can',\n  'cannot',\n  'could',\n  'dear',\n  'did',\n  'do',\n  'does',\n  'either',\n  'else',\n  'ever',\n  'every',\n  'for',\n  'from',\n  'get',\n  'got',\n  'had',\n  'has',\n  'have',\n  'he',\n  'her',\n  'hers',\n  'him',\n  'his',\n  'how',\n  'however',\n  'i',\n  'if',\n  'in',\n  'into',\n  'is',\n  'it',\n  'its',\n  'just',\n  'least',\n  'let',\n  'like',\n  'likely',\n  'may',\n  'me',\n  'might',\n  'most',\n  'must',\n  'my',\n  'neither',\n  'no',\n  'nor',\n  'not',\n  'of',\n  'off',\n  'often',\n  'on',\n  'only',\n  'or',\n  'other',\n  'our',\n  'own',\n  'rather',\n  'said',\n  'say',\n  'says',\n  'she',\n  'should',\n  'since',\n  'so',\n  'some',\n  'than',\n  'that',\n  'the',\n  'their',\n  'them',\n  'then',\n  'there',\n  'these',\n  'they',\n  'this',\n  'tis',\n  'to',\n  'too',\n  'twas',\n  'us',\n  'wants',\n  'was',\n  'we',\n  'were',\n  'what',\n  'when',\n  'where',\n  'which',\n  'while',\n  'who',\n  'whom',\n  'why',\n  'will',\n  'with',\n  'would',\n  'yet',\n  'you',\n  'your'\n])\n\nlunr.Pipeline.registerFunction(lunr.stopWordFilter, 'stopWordFilter')\n/*!\n * lunr.trimmer\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * lunr.trimmer is a pipeline function for trimming non word\n * characters from the beginning and end of tokens before they\n * enter the index.\n *\n * This implementation may not work correctly for non latin\n * characters and should either be removed or adapted for use\n * with languages with non-latin characters.\n *\n * @static\n * @implements {lunr.PipelineFunction}\n * @param {lunr.Token} token The token to pass through the filter\n * @returns {lunr.Token}\n * @see lunr.Pipeline\n */\nlunr.trimmer = function (token) {\n  return token.update(function (s) {\n    return s.replace(/^\\W+/, '').replace(/\\W+$/, '')\n  })\n}\n\nlunr.Pipeline.registerFunction(lunr.trimmer, 'trimmer')\n/*!\n * lunr.TokenSet\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * A token set is used to store the unique list of all tokens\n * within an index. Token sets are also used to represent an\n * incoming query to the index, this query token set and index\n * token set are then intersected to find which tokens to look\n * up in the inverted index.\n *\n * A token set can hold multiple tokens, as in the case of the\n * index token set, or it can hold a single token as in the\n * case of a simple query token set.\n *\n * Additionally token sets are used to perform wildcard matching.\n * Leading, contained and trailing wildcards are supported, and\n * from this edit distance matching can also be provided.\n *\n * Token sets are implemented as a minimal finite state automata,\n * where both common prefixes and suffixes are shared between tokens.\n * This helps to reduce the space used for storing the token set.\n *\n * @constructor\n */\nlunr.TokenSet = function () {\n  this.final = false\n  this.edges = {}\n  this.id = lunr.TokenSet._nextId\n  lunr.TokenSet._nextId += 1\n}\n\n/**\n * Keeps track of the next, auto increment, identifier to assign\n * to a new tokenSet.\n *\n * TokenSets require a unique identifier to be correctly minimised.\n *\n * @private\n */\nlunr.TokenSet._nextId = 1\n\n/**\n * Creates a TokenSet instance from the given sorted array of words.\n *\n * @param {String[]} arr - A sorted array of strings to create the set from.\n * @returns {lunr.TokenSet}\n * @throws Will throw an error if the input array is not sorted.\n */\nlunr.TokenSet.fromArray = function (arr) {\n  var builder = new lunr.TokenSet.Builder\n\n  for (var i = 0, len = arr.length; i < len; i++) {\n    builder.insert(arr[i])\n  }\n\n  builder.finish()\n  return builder.root\n}\n\n/**\n * Creates a token set from a query clause.\n *\n * @private\n * @param {Object} clause - A single clause from lunr.Query.\n * @param {string} clause.term - The query clause term.\n * @param {number} [clause.editDistance] - The optional edit distance for the term.\n * @returns {lunr.TokenSet}\n */\nlunr.TokenSet.fromClause = function (clause) {\n  if ('editDistance' in clause) {\n    return lunr.TokenSet.fromFuzzyString(clause.term, clause.editDistance)\n  } else {\n    return lunr.TokenSet.fromString(clause.term)\n  }\n}\n\n/**\n * Creates a token set representing a single string with a specified\n * edit distance.\n *\n * Insertions, deletions, substitutions and transpositions are each\n * treated as an edit distance of 1.\n *\n * Increasing the allowed edit distance will have a dramatic impact\n * on the performance of both creating and intersecting these TokenSets.\n * It is advised to keep the edit distance less than 3.\n *\n * @param {string} str - The string to create the token set from.\n * @param {number} editDistance - The allowed edit distance to match.\n * @returns {lunr.Vector}\n */\nlunr.TokenSet.fromFuzzyString = function (str, editDistance) {\n  var root = new lunr.TokenSet\n\n  var stack = [{\n    node: root,\n    editsRemaining: editDistance,\n    str: str\n  }]\n\n  while (stack.length) {\n    var frame = stack.pop()\n\n    // no edit\n    if (frame.str.length > 0) {\n      var char = frame.str.charAt(0),\n          noEditNode\n\n      if (char in frame.node.edges) {\n        noEditNode = frame.node.edges[char]\n      } else {\n        noEditNode = new lunr.TokenSet\n        frame.node.edges[char] = noEditNode\n      }\n\n      if (frame.str.length == 1) {\n        noEditNode.final = true\n      }\n\n      stack.push({\n        node: noEditNode,\n        editsRemaining: frame.editsRemaining,\n        str: frame.str.slice(1)\n      })\n    }\n\n    if (frame.editsRemaining == 0) {\n      continue\n    }\n\n    // insertion\n    if (\"*\" in frame.node.edges) {\n      var insertionNode = frame.node.edges[\"*\"]\n    } else {\n      var insertionNode = new lunr.TokenSet\n      frame.node.edges[\"*\"] = insertionNode\n    }\n\n    if (frame.str.length == 0) {\n      insertionNode.final = true\n    }\n\n    stack.push({\n      node: insertionNode,\n      editsRemaining: frame.editsRemaining - 1,\n      str: frame.str\n    })\n\n    // deletion\n    // can only do a deletion if we have enough edits remaining\n    // and if there are characters left to delete in the string\n    if (frame.str.length > 1) {\n      stack.push({\n        node: frame.node,\n        editsRemaining: frame.editsRemaining - 1,\n        str: frame.str.slice(1)\n      })\n    }\n\n    // deletion\n    // just removing the last character from the str\n    if (frame.str.length == 1) {\n      frame.node.final = true\n    }\n\n    // substitution\n    // can only do a substitution if we have enough edits remaining\n    // and if there are characters left to substitute\n    if (frame.str.length >= 1) {\n      if (\"*\" in frame.node.edges) {\n        var substitutionNode = frame.node.edges[\"*\"]\n      } else {\n        var substitutionNode = new lunr.TokenSet\n        frame.node.edges[\"*\"] = substitutionNode\n      }\n\n      if (frame.str.length == 1) {\n        substitutionNode.final = true\n      }\n\n      stack.push({\n        node: substitutionNode,\n        editsRemaining: frame.editsRemaining - 1,\n        str: frame.str.slice(1)\n      })\n    }\n\n    // transposition\n    // can only do a transposition if there are edits remaining\n    // and there are enough characters to transpose\n    if (frame.str.length > 1) {\n      var charA = frame.str.charAt(0),\n          charB = frame.str.charAt(1),\n          transposeNode\n\n      if (charB in frame.node.edges) {\n        transposeNode = frame.node.edges[charB]\n      } else {\n        transposeNode = new lunr.TokenSet\n        frame.node.edges[charB] = transposeNode\n      }\n\n      if (frame.str.length == 1) {\n        transposeNode.final = true\n      }\n\n      stack.push({\n        node: transposeNode,\n        editsRemaining: frame.editsRemaining - 1,\n        str: charA + frame.str.slice(2)\n      })\n    }\n  }\n\n  return root\n}\n\n/**\n * Creates a TokenSet from a string.\n *\n * The string may contain one or more wildcard characters (*)\n * that will allow wildcard matching when intersecting with\n * another TokenSet.\n *\n * @param {string} str - The string to create a TokenSet from.\n * @returns {lunr.TokenSet}\n */\nlunr.TokenSet.fromString = function (str) {\n  var node = new lunr.TokenSet,\n      root = node\n\n  /*\n   * Iterates through all characters within the passed string\n   * appending a node for each character.\n   *\n   * When a wildcard character is found then a self\n   * referencing edge is introduced to continually match\n   * any number of any characters.\n   */\n  for (var i = 0, len = str.length; i < len; i++) {\n    var char = str[i],\n        final = (i == len - 1)\n\n    if (char == \"*\") {\n      node.edges[char] = node\n      node.final = final\n\n    } else {\n      var next = new lunr.TokenSet\n      next.final = final\n\n      node.edges[char] = next\n      node = next\n    }\n  }\n\n  return root\n}\n\n/**\n * Converts this TokenSet into an array of strings\n * contained within the TokenSet.\n *\n * This is not intended to be used on a TokenSet that\n * contains wildcards, in these cases the results are\n * undefined and are likely to cause an infinite loop.\n *\n * @returns {string[]}\n */\nlunr.TokenSet.prototype.toArray = function () {\n  var words = []\n\n  var stack = [{\n    prefix: \"\",\n    node: this\n  }]\n\n  while (stack.length) {\n    var frame = stack.pop(),\n        edges = Object.keys(frame.node.edges),\n        len = edges.length\n\n    if (frame.node.final) {\n      /* In Safari, at this point the prefix is sometimes corrupted, see:\n       * https://github.com/olivernn/lunr.js/issues/279 Calling any\n       * String.prototype method forces Safari to \"cast\" this string to what\n       * it's supposed to be, fixing the bug. */\n      frame.prefix.charAt(0)\n      words.push(frame.prefix)\n    }\n\n    for (var i = 0; i < len; i++) {\n      var edge = edges[i]\n\n      stack.push({\n        prefix: frame.prefix.concat(edge),\n        node: frame.node.edges[edge]\n      })\n    }\n  }\n\n  return words\n}\n\n/**\n * Generates a string representation of a TokenSet.\n *\n * This is intended to allow TokenSets to be used as keys\n * in objects, largely to aid the construction and minimisation\n * of a TokenSet. As such it is not designed to be a human\n * friendly representation of the TokenSet.\n *\n * @returns {string}\n */\nlunr.TokenSet.prototype.toString = function () {\n  // NOTE: Using Object.keys here as this.edges is very likely\n  // to enter 'hash-mode' with many keys being added\n  //\n  // avoiding a for-in loop here as it leads to the function\n  // being de-optimised (at least in V8). From some simple\n  // benchmarks the performance is comparable, but allowing\n  // V8 to optimize may mean easy performance wins in the future.\n\n  if (this._str) {\n    return this._str\n  }\n\n  var str = this.final ? '1' : '0',\n      labels = Object.keys(this.edges).sort(),\n      len = labels.length\n\n  for (var i = 0; i < len; i++) {\n    var label = labels[i],\n        node = this.edges[label]\n\n    str = str + label + node.id\n  }\n\n  return str\n}\n\n/**\n * Returns a new TokenSet that is the intersection of\n * this TokenSet and the passed TokenSet.\n *\n * This intersection will take into account any wildcards\n * contained within the TokenSet.\n *\n * @param {lunr.TokenSet} b - An other TokenSet to intersect with.\n * @returns {lunr.TokenSet}\n */\nlunr.TokenSet.prototype.intersect = function (b) {\n  var output = new lunr.TokenSet,\n      frame = undefined\n\n  var stack = [{\n    qNode: b,\n    output: output,\n    node: this\n  }]\n\n  while (stack.length) {\n    frame = stack.pop()\n\n    // NOTE: As with the #toString method, we are using\n    // Object.keys and a for loop instead of a for-in loop\n    // as both of these objects enter 'hash' mode, causing\n    // the function to be de-optimised in V8\n    var qEdges = Object.keys(frame.qNode.edges),\n        qLen = qEdges.length,\n        nEdges = Object.keys(frame.node.edges),\n        nLen = nEdges.length\n\n    for (var q = 0; q < qLen; q++) {\n      var qEdge = qEdges[q]\n\n      for (var n = 0; n < nLen; n++) {\n        var nEdge = nEdges[n]\n\n        if (nEdge == qEdge || qEdge == '*') {\n          var node = frame.node.edges[nEdge],\n              qNode = frame.qNode.edges[qEdge],\n              final = node.final && qNode.final,\n              next = undefined\n\n          if (nEdge in frame.output.edges) {\n            // an edge already exists for this character\n            // no need to create a new node, just set the finality\n            // bit unless this node is already final\n            next = frame.output.edges[nEdge]\n            next.final = next.final || final\n\n          } else {\n            // no edge exists yet, must create one\n            // set the finality bit and insert it\n            // into the output\n            next = new lunr.TokenSet\n            next.final = final\n            frame.output.edges[nEdge] = next\n          }\n\n          stack.push({\n            qNode: qNode,\n            output: next,\n            node: node\n          })\n        }\n      }\n    }\n  }\n\n  return output\n}\nlunr.TokenSet.Builder = function () {\n  this.previousWord = \"\"\n  this.root = new lunr.TokenSet\n  this.uncheckedNodes = []\n  this.minimizedNodes = {}\n}\n\nlunr.TokenSet.Builder.prototype.insert = function (word) {\n  var node,\n      commonPrefix = 0\n\n  if (word < this.previousWord) {\n    throw new Error (\"Out of order word insertion\")\n  }\n\n  for (var i = 0; i < word.length && i < this.previousWord.length; i++) {\n    if (word[i] != this.previousWord[i]) break\n    commonPrefix++\n  }\n\n  this.minimize(commonPrefix)\n\n  if (this.uncheckedNodes.length == 0) {\n    node = this.root\n  } else {\n    node = this.uncheckedNodes[this.uncheckedNodes.length - 1].child\n  }\n\n  for (var i = commonPrefix; i < word.length; i++) {\n    var nextNode = new lunr.TokenSet,\n        char = word[i]\n\n    node.edges[char] = nextNode\n\n    this.uncheckedNodes.push({\n      parent: node,\n      char: char,\n      child: nextNode\n    })\n\n    node = nextNode\n  }\n\n  node.final = true\n  this.previousWord = word\n}\n\nlunr.TokenSet.Builder.prototype.finish = function () {\n  this.minimize(0)\n}\n\nlunr.TokenSet.Builder.prototype.minimize = function (downTo) {\n  for (var i = this.uncheckedNodes.length - 1; i >= downTo; i--) {\n    var node = this.uncheckedNodes[i],\n        childKey = node.child.toString()\n\n    if (childKey in this.minimizedNodes) {\n      node.parent.edges[node.char] = this.minimizedNodes[childKey]\n    } else {\n      // Cache the key for this node since\n      // we know it can't change anymore\n      node.child._str = childKey\n\n      this.minimizedNodes[childKey] = node.child\n    }\n\n    this.uncheckedNodes.pop()\n  }\n}\n/*!\n * lunr.Index\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * An index contains the built index of all documents and provides a query interface\n * to the index.\n *\n * Usually instances of lunr.Index will not be created using this constructor, instead\n * lunr.Builder should be used to construct new indexes, or lunr.Index.load should be\n * used to load previously built and serialized indexes.\n *\n * @constructor\n * @param {Object} attrs - The attributes of the built search index.\n * @param {Object} attrs.invertedIndex - An index of term/field to document reference.\n * @param {Object<string, lunr.Vector>} attrs.fieldVectors - Field vectors\n * @param {lunr.TokenSet} attrs.tokenSet - An set of all corpus tokens.\n * @param {string[]} attrs.fields - The names of indexed document fields.\n * @param {lunr.Pipeline} attrs.pipeline - The pipeline to use for search terms.\n */\nlunr.Index = function (attrs) {\n  this.invertedIndex = attrs.invertedIndex\n  this.fieldVectors = attrs.fieldVectors\n  this.tokenSet = attrs.tokenSet\n  this.fields = attrs.fields\n  this.pipeline = attrs.pipeline\n}\n\n/**\n * A result contains details of a document matching a search query.\n * @typedef {Object} lunr.Index~Result\n * @property {string} ref - The reference of the document this result represents.\n * @property {number} score - A number between 0 and 1 representing how similar this document is to the query.\n * @property {lunr.MatchData} matchData - Contains metadata about this match including which term(s) caused the match.\n */\n\n/**\n * Although lunr provides the ability to create queries using lunr.Query, it also provides a simple\n * query language which itself is parsed into an instance of lunr.Query.\n *\n * For programmatically building queries it is advised to directly use lunr.Query, the query language\n * is best used for human entered text rather than program generated text.\n *\n * At its simplest queries can just be a single term, e.g. `hello`, multiple terms are also supported\n * and will be combined with OR, e.g `hello world` will match documents that contain either 'hello'\n * or 'world', though those that contain both will rank higher in the results.\n *\n * Wildcards can be included in terms to match one or more unspecified characters, these wildcards can\n * be inserted anywhere within the term, and more than one wildcard can exist in a single term. Adding\n * wildcards will increase the number of documents that will be found but can also have a negative\n * impact on query performance, especially with wildcards at the beginning of a term.\n *\n * Terms can be restricted to specific fields, e.g. `title:hello`, only documents with the term\n * hello in the title field will match this query. Using a field not present in the index will lead\n * to an error being thrown.\n *\n * Modifiers can also be added to terms, lunr supports edit distance and boost modifiers on terms. A term\n * boost will make documents matching that term score higher, e.g. `foo^5`. Edit distance is also supported\n * to provide fuzzy matching, e.g. 'hello~2' will match documents with hello with an edit distance of 2.\n * Avoid large values for edit distance to improve query performance.\n *\n * Each term also supports a presence modifier. By default a term's presence in document is optional, however\n * this can be changed to either required or prohibited. For a term's presence to be required in a document the\n * term should be prefixed with a '+', e.g. `+foo bar` is a search for documents that must contain 'foo' and\n * optionally contain 'bar'. Conversely a leading '-' sets the terms presence to prohibited, i.e. it must not\n * appear in a document, e.g. `-foo bar` is a search for documents that do not contain 'foo' but may contain 'bar'.\n *\n * To escape special characters the backslash character '\\' can be used, this allows searches to include\n * characters that would normally be considered modifiers, e.g. `foo\\~2` will search for a term \"foo~2\" instead\n * of attempting to apply a boost of 2 to the search term \"foo\".\n *\n * @typedef {string} lunr.Index~QueryString\n * @example <caption>Simple single term query</caption>\n * hello\n * @example <caption>Multiple term query</caption>\n * hello world\n * @example <caption>term scoped to a field</caption>\n * title:hello\n * @example <caption>term with a boost of 10</caption>\n * hello^10\n * @example <caption>term with an edit distance of 2</caption>\n * hello~2\n * @example <caption>terms with presence modifiers</caption>\n * -foo +bar baz\n */\n\n/**\n * Performs a search against the index using lunr query syntax.\n *\n * Results will be returned sorted by their score, the most relevant results\n * will be returned first.  For details on how the score is calculated, please see\n * the {@link https://lunrjs.com/guides/searching.html#scoring|guide}.\n *\n * For more programmatic querying use lunr.Index#query.\n *\n * @param {lunr.Index~QueryString} queryString - A string containing a lunr query.\n * @throws {lunr.QueryParseError} If the passed query string cannot be parsed.\n * @returns {lunr.Index~Result[]}\n */\nlunr.Index.prototype.search = function (queryString) {\n  return this.query(function (query) {\n    var parser = new lunr.QueryParser(queryString, query)\n    parser.parse()\n  })\n}\n\n/**\n * A query builder callback provides a query object to be used to express\n * the query to perform on the index.\n *\n * @callback lunr.Index~queryBuilder\n * @param {lunr.Query} query - The query object to build up.\n * @this lunr.Query\n */\n\n/**\n * Performs a query against the index using the yielded lunr.Query object.\n *\n * If performing programmatic queries against the index, this method is preferred\n * over lunr.Index#search so as to avoid the additional query parsing overhead.\n *\n * A query object is yielded to the supplied function which should be used to\n * express the query to be run against the index.\n *\n * Note that although this function takes a callback parameter it is _not_ an\n * asynchronous operation, the callback is just yielded a query object to be\n * customized.\n *\n * @param {lunr.Index~queryBuilder} fn - A function that is used to build the query.\n * @returns {lunr.Index~Result[]}\n */\nlunr.Index.prototype.query = function (fn) {\n  // for each query clause\n  // * process terms\n  // * expand terms from token set\n  // * find matching documents and metadata\n  // * get document vectors\n  // * score documents\n\n  var query = new lunr.Query(this.fields),\n      matchingFields = Object.create(null),\n      queryVectors = Object.create(null),\n      termFieldCache = Object.create(null),\n      requiredMatches = Object.create(null),\n      prohibitedMatches = Object.create(null)\n\n  /*\n   * To support field level boosts a query vector is created per\n   * field. An empty vector is eagerly created to support negated\n   * queries.\n   */\n  for (var i = 0; i < this.fields.length; i++) {\n    queryVectors[this.fields[i]] = new lunr.Vector\n  }\n\n  fn.call(query, query)\n\n  for (var i = 0; i < query.clauses.length; i++) {\n    /*\n     * Unless the pipeline has been disabled for this term, which is\n     * the case for terms with wildcards, we need to pass the clause\n     * term through the search pipeline. A pipeline returns an array\n     * of processed terms. Pipeline functions may expand the passed\n     * term, which means we may end up performing multiple index lookups\n     * for a single query term.\n     */\n    var clause = query.clauses[i],\n        terms = null,\n        clauseMatches = lunr.Set.empty\n\n    if (clause.usePipeline) {\n      terms = this.pipeline.runString(clause.term, {\n        fields: clause.fields\n      })\n    } else {\n      terms = [clause.term]\n    }\n\n    for (var m = 0; m < terms.length; m++) {\n      var term = terms[m]\n\n      /*\n       * Each term returned from the pipeline needs to use the same query\n       * clause object, e.g. the same boost and or edit distance. The\n       * simplest way to do this is to re-use the clause object but mutate\n       * its term property.\n       */\n      clause.term = term\n\n      /*\n       * From the term in the clause we create a token set which will then\n       * be used to intersect the indexes token set to get a list of terms\n       * to lookup in the inverted index\n       */\n      var termTokenSet = lunr.TokenSet.fromClause(clause),\n          expandedTerms = this.tokenSet.intersect(termTokenSet).toArray()\n\n      /*\n       * If a term marked as required does not exist in the tokenSet it is\n       * impossible for the search to return any matches. We set all the field\n       * scoped required matches set to empty and stop examining any further\n       * clauses.\n       */\n      if (expandedTerms.length === 0 && clause.presence === lunr.Query.presence.REQUIRED) {\n        for (var k = 0; k < clause.fields.length; k++) {\n          var field = clause.fields[k]\n          requiredMatches[field] = lunr.Set.empty\n        }\n\n        break\n      }\n\n      for (var j = 0; j < expandedTerms.length; j++) {\n        /*\n         * For each term get the posting and termIndex, this is required for\n         * building the query vector.\n         */\n        var expandedTerm = expandedTerms[j],\n            posting = this.invertedIndex[expandedTerm],\n            termIndex = posting._index\n\n        for (var k = 0; k < clause.fields.length; k++) {\n          /*\n           * For each field that this query term is scoped by (by default\n           * all fields are in scope) we need to get all the document refs\n           * that have this term in that field.\n           *\n           * The posting is the entry in the invertedIndex for the matching\n           * term from above.\n           */\n          var field = clause.fields[k],\n              fieldPosting = posting[field],\n              matchingDocumentRefs = Object.keys(fieldPosting),\n              termField = expandedTerm + \"/\" + field,\n              matchingDocumentsSet = new lunr.Set(matchingDocumentRefs)\n\n          /*\n           * if the presence of this term is required ensure that the matching\n           * documents are added to the set of required matches for this clause.\n           *\n           */\n          if (clause.presence == lunr.Query.presence.REQUIRED) {\n            clauseMatches = clauseMatches.union(matchingDocumentsSet)\n\n            if (requiredMatches[field] === undefined) {\n              requiredMatches[field] = lunr.Set.complete\n            }\n          }\n\n          /*\n           * if the presence of this term is prohibited ensure that the matching\n           * documents are added to the set of prohibited matches for this field,\n           * creating that set if it does not yet exist.\n           */\n          if (clause.presence == lunr.Query.presence.PROHIBITED) {\n            if (prohibitedMatches[field] === undefined) {\n              prohibitedMatches[field] = lunr.Set.empty\n            }\n\n            prohibitedMatches[field] = prohibitedMatches[field].union(matchingDocumentsSet)\n\n            /*\n             * Prohibited matches should not be part of the query vector used for\n             * similarity scoring and no metadata should be extracted so we continue\n             * to the next field\n             */\n            continue\n          }\n\n          /*\n           * The query field vector is populated using the termIndex found for\n           * the term and a unit value with the appropriate boost applied.\n           * Using upsert because there could already be an entry in the vector\n           * for the term we are working with. In that case we just add the scores\n           * together.\n           */\n          queryVectors[field].upsert(termIndex, clause.boost, function (a, b) { return a + b })\n\n          /**\n           * If we've already seen this term, field combo then we've already collected\n           * the matching documents and metadata, no need to go through all that again\n           */\n          if (termFieldCache[termField]) {\n            continue\n          }\n\n          for (var l = 0; l < matchingDocumentRefs.length; l++) {\n            /*\n             * All metadata for this term/field/document triple\n             * are then extracted and collected into an instance\n             * of lunr.MatchData ready to be returned in the query\n             * results\n             */\n            var matchingDocumentRef = matchingDocumentRefs[l],\n                matchingFieldRef = new lunr.FieldRef (matchingDocumentRef, field),\n                metadata = fieldPosting[matchingDocumentRef],\n                fieldMatch\n\n            if ((fieldMatch = matchingFields[matchingFieldRef]) === undefined) {\n              matchingFields[matchingFieldRef] = new lunr.MatchData (expandedTerm, field, metadata)\n            } else {\n              fieldMatch.add(expandedTerm, field, metadata)\n            }\n\n          }\n\n          termFieldCache[termField] = true\n        }\n      }\n    }\n\n    /**\n     * If the presence was required we need to update the requiredMatches field sets.\n     * We do this after all fields for the term have collected their matches because\n     * the clause terms presence is required in _any_ of the fields not _all_ of the\n     * fields.\n     */\n    if (clause.presence === lunr.Query.presence.REQUIRED) {\n      for (var k = 0; k < clause.fields.length; k++) {\n        var field = clause.fields[k]\n        requiredMatches[field] = requiredMatches[field].intersect(clauseMatches)\n      }\n    }\n  }\n\n  /**\n   * Need to combine the field scoped required and prohibited\n   * matching documents into a global set of required and prohibited\n   * matches\n   */\n  var allRequiredMatches = lunr.Set.complete,\n      allProhibitedMatches = lunr.Set.empty\n\n  for (var i = 0; i < this.fields.length; i++) {\n    var field = this.fields[i]\n\n    if (requiredMatches[field]) {\n      allRequiredMatches = allRequiredMatches.intersect(requiredMatches[field])\n    }\n\n    if (prohibitedMatches[field]) {\n      allProhibitedMatches = allProhibitedMatches.union(prohibitedMatches[field])\n    }\n  }\n\n  var matchingFieldRefs = Object.keys(matchingFields),\n      results = [],\n      matches = Object.create(null)\n\n  /*\n   * If the query is negated (contains only prohibited terms)\n   * we need to get _all_ fieldRefs currently existing in the\n   * index. This is only done when we know that the query is\n   * entirely prohibited terms to avoid any cost of getting all\n   * fieldRefs unnecessarily.\n   *\n   * Additionally, blank MatchData must be created to correctly\n   * populate the results.\n   */\n  if (query.isNegated()) {\n    matchingFieldRefs = Object.keys(this.fieldVectors)\n\n    for (var i = 0; i < matchingFieldRefs.length; i++) {\n      var matchingFieldRef = matchingFieldRefs[i]\n      var fieldRef = lunr.FieldRef.fromString(matchingFieldRef)\n      matchingFields[matchingFieldRef] = new lunr.MatchData\n    }\n  }\n\n  for (var i = 0; i < matchingFieldRefs.length; i++) {\n    /*\n     * Currently we have document fields that match the query, but we\n     * need to return documents. The matchData and scores are combined\n     * from multiple fields belonging to the same document.\n     *\n     * Scores are calculated by field, using the query vectors created\n     * above, and combined into a final document score using addition.\n     */\n    var fieldRef = lunr.FieldRef.fromString(matchingFieldRefs[i]),\n        docRef = fieldRef.docRef\n\n    if (!allRequiredMatches.contains(docRef)) {\n      continue\n    }\n\n    if (allProhibitedMatches.contains(docRef)) {\n      continue\n    }\n\n    var fieldVector = this.fieldVectors[fieldRef],\n        score = queryVectors[fieldRef.fieldName].similarity(fieldVector),\n        docMatch\n\n    if ((docMatch = matches[docRef]) !== undefined) {\n      docMatch.score += score\n      docMatch.matchData.combine(matchingFields[fieldRef])\n    } else {\n      var match = {\n        ref: docRef,\n        score: score,\n        matchData: matchingFields[fieldRef]\n      }\n      matches[docRef] = match\n      results.push(match)\n    }\n  }\n\n  /*\n   * Sort the results objects by score, highest first.\n   */\n  return results.sort(function (a, b) {\n    return b.score - a.score\n  })\n}\n\n/**\n * Prepares the index for JSON serialization.\n *\n * The schema for this JSON blob will be described in a\n * separate JSON schema file.\n *\n * @returns {Object}\n */\nlunr.Index.prototype.toJSON = function () {\n  var invertedIndex = Object.keys(this.invertedIndex)\n    .sort()\n    .map(function (term) {\n      return [term, this.invertedIndex[term]]\n    }, this)\n\n  var fieldVectors = Object.keys(this.fieldVectors)\n    .map(function (ref) {\n      return [ref, this.fieldVectors[ref].toJSON()]\n    }, this)\n\n  return {\n    version: lunr.version,\n    fields: this.fields,\n    fieldVectors: fieldVectors,\n    invertedIndex: invertedIndex,\n    pipeline: this.pipeline.toJSON()\n  }\n}\n\n/**\n * Loads a previously serialized lunr.Index\n *\n * @param {Object} serializedIndex - A previously serialized lunr.Index\n * @returns {lunr.Index}\n */\nlunr.Index.load = function (serializedIndex) {\n  var attrs = {},\n      fieldVectors = {},\n      serializedVectors = serializedIndex.fieldVectors,\n      invertedIndex = Object.create(null),\n      serializedInvertedIndex = serializedIndex.invertedIndex,\n      tokenSetBuilder = new lunr.TokenSet.Builder,\n      pipeline = lunr.Pipeline.load(serializedIndex.pipeline)\n\n  if (serializedIndex.version != lunr.version) {\n    lunr.utils.warn(\"Version mismatch when loading serialised index. Current version of lunr '\" + lunr.version + \"' does not match serialized index '\" + serializedIndex.version + \"'\")\n  }\n\n  for (var i = 0; i < serializedVectors.length; i++) {\n    var tuple = serializedVectors[i],\n        ref = tuple[0],\n        elements = tuple[1]\n\n    fieldVectors[ref] = new lunr.Vector(elements)\n  }\n\n  for (var i = 0; i < serializedInvertedIndex.length; i++) {\n    var tuple = serializedInvertedIndex[i],\n        term = tuple[0],\n        posting = tuple[1]\n\n    tokenSetBuilder.insert(term)\n    invertedIndex[term] = posting\n  }\n\n  tokenSetBuilder.finish()\n\n  attrs.fields = serializedIndex.fields\n\n  attrs.fieldVectors = fieldVectors\n  attrs.invertedIndex = invertedIndex\n  attrs.tokenSet = tokenSetBuilder.root\n  attrs.pipeline = pipeline\n\n  return new lunr.Index(attrs)\n}\n/*!\n * lunr.Builder\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * lunr.Builder performs indexing on a set of documents and\n * returns instances of lunr.Index ready for querying.\n *\n * All configuration of the index is done via the builder, the\n * fields to index, the document reference, the text processing\n * pipeline and document scoring parameters are all set on the\n * builder before indexing.\n *\n * @constructor\n * @property {string} _ref - Internal reference to the document reference field.\n * @property {string[]} _fields - Internal reference to the document fields to index.\n * @property {object} invertedIndex - The inverted index maps terms to document fields.\n * @property {object} documentTermFrequencies - Keeps track of document term frequencies.\n * @property {object} documentLengths - Keeps track of the length of documents added to the index.\n * @property {lunr.tokenizer} tokenizer - Function for splitting strings into tokens for indexing.\n * @property {lunr.Pipeline} pipeline - The pipeline performs text processing on tokens before indexing.\n * @property {lunr.Pipeline} searchPipeline - A pipeline for processing search terms before querying the index.\n * @property {number} documentCount - Keeps track of the total number of documents indexed.\n * @property {number} _b - A parameter to control field length normalization, setting this to 0 disabled normalization, 1 fully normalizes field lengths, the default value is 0.75.\n * @property {number} _k1 - A parameter to control how quickly an increase in term frequency results in term frequency saturation, the default value is 1.2.\n * @property {number} termIndex - A counter incremented for each unique term, used to identify a terms position in the vector space.\n * @property {array} metadataWhitelist - A list of metadata keys that have been whitelisted for entry in the index.\n */\nlunr.Builder = function () {\n  this._ref = \"id\"\n  this._fields = Object.create(null)\n  this._documents = Object.create(null)\n  this.invertedIndex = Object.create(null)\n  this.fieldTermFrequencies = {}\n  this.fieldLengths = {}\n  this.tokenizer = lunr.tokenizer\n  this.pipeline = new lunr.Pipeline\n  this.searchPipeline = new lunr.Pipeline\n  this.documentCount = 0\n  this._b = 0.75\n  this._k1 = 1.2\n  this.termIndex = 0\n  this.metadataWhitelist = []\n}\n\n/**\n * Sets the document field used as the document reference. Every document must have this field.\n * The type of this field in the document should be a string, if it is not a string it will be\n * coerced into a string by calling toString.\n *\n * The default ref is 'id'.\n *\n * The ref should _not_ be changed during indexing, it should be set before any documents are\n * added to the index. Changing it during indexing can lead to inconsistent results.\n *\n * @param {string} ref - The name of the reference field in the document.\n */\nlunr.Builder.prototype.ref = function (ref) {\n  this._ref = ref\n}\n\n/**\n * A function that is used to extract a field from a document.\n *\n * Lunr expects a field to be at the top level of a document, if however the field\n * is deeply nested within a document an extractor function can be used to extract\n * the right field for indexing.\n *\n * @callback fieldExtractor\n * @param {object} doc - The document being added to the index.\n * @returns {?(string|object|object[])} obj - The object that will be indexed for this field.\n * @example <caption>Extracting a nested field</caption>\n * function (doc) { return doc.nested.field }\n */\n\n/**\n * Adds a field to the list of document fields that will be indexed. Every document being\n * indexed should have this field. Null values for this field in indexed documents will\n * not cause errors but will limit the chance of that document being retrieved by searches.\n *\n * All fields should be added before adding documents to the index. Adding fields after\n * a document has been indexed will have no effect on already indexed documents.\n *\n * Fields can be boosted at build time. This allows terms within that field to have more\n * importance when ranking search results. Use a field boost to specify that matches within\n * one field are more important than other fields.\n *\n * @param {string} fieldName - The name of a field to index in all documents.\n * @param {object} attributes - Optional attributes associated with this field.\n * @param {number} [attributes.boost=1] - Boost applied to all terms within this field.\n * @param {fieldExtractor} [attributes.extractor] - Function to extract a field from a document.\n * @throws {RangeError} fieldName cannot contain unsupported characters '/'\n */\nlunr.Builder.prototype.field = function (fieldName, attributes) {\n  if (/\\//.test(fieldName)) {\n    throw new RangeError (\"Field '\" + fieldName + \"' contains illegal character '/'\")\n  }\n\n  this._fields[fieldName] = attributes || {}\n}\n\n/**\n * A parameter to tune the amount of field length normalisation that is applied when\n * calculating relevance scores. A value of 0 will completely disable any normalisation\n * and a value of 1 will fully normalise field lengths. The default is 0.75. Values of b\n * will be clamped to the range 0 - 1.\n *\n * @param {number} number - The value to set for this tuning parameter.\n */\nlunr.Builder.prototype.b = function (number) {\n  if (number < 0) {\n    this._b = 0\n  } else if (number > 1) {\n    this._b = 1\n  } else {\n    this._b = number\n  }\n}\n\n/**\n * A parameter that controls the speed at which a rise in term frequency results in term\n * frequency saturation. The default value is 1.2. Setting this to a higher value will give\n * slower saturation levels, a lower value will result in quicker saturation.\n *\n * @param {number} number - The value to set for this tuning parameter.\n */\nlunr.Builder.prototype.k1 = function (number) {\n  this._k1 = number\n}\n\n/**\n * Adds a document to the index.\n *\n * Before adding fields to the index the index should have been fully setup, with the document\n * ref and all fields to index already having been specified.\n *\n * The document must have a field name as specified by the ref (by default this is 'id') and\n * it should have all fields defined for indexing, though null or undefined values will not\n * cause errors.\n *\n * Entire documents can be boosted at build time. Applying a boost to a document indicates that\n * this document should rank higher in search results than other documents.\n *\n * @param {object} doc - The document to add to the index.\n * @param {object} attributes - Optional attributes associated with this document.\n * @param {number} [attributes.boost=1] - Boost applied to all terms within this document.\n */\nlunr.Builder.prototype.add = function (doc, attributes) {\n  var docRef = doc[this._ref],\n      fields = Object.keys(this._fields)\n\n  this._documents[docRef] = attributes || {}\n  this.documentCount += 1\n\n  for (var i = 0; i < fields.length; i++) {\n    var fieldName = fields[i],\n        extractor = this._fields[fieldName].extractor,\n        field = extractor ? extractor(doc) : doc[fieldName],\n        tokens = this.tokenizer(field, {\n          fields: [fieldName]\n        }),\n        terms = this.pipeline.run(tokens),\n        fieldRef = new lunr.FieldRef (docRef, fieldName),\n        fieldTerms = Object.create(null)\n\n    this.fieldTermFrequencies[fieldRef] = fieldTerms\n    this.fieldLengths[fieldRef] = 0\n\n    // store the length of this field for this document\n    this.fieldLengths[fieldRef] += terms.length\n\n    // calculate term frequencies for this field\n    for (var j = 0; j < terms.length; j++) {\n      var term = terms[j]\n\n      if (fieldTerms[term] == undefined) {\n        fieldTerms[term] = 0\n      }\n\n      fieldTerms[term] += 1\n\n      // add to inverted index\n      // create an initial posting if one doesn't exist\n      if (this.invertedIndex[term] == undefined) {\n        var posting = Object.create(null)\n        posting[\"_index\"] = this.termIndex\n        this.termIndex += 1\n\n        for (var k = 0; k < fields.length; k++) {\n          posting[fields[k]] = Object.create(null)\n        }\n\n        this.invertedIndex[term] = posting\n      }\n\n      // add an entry for this term/fieldName/docRef to the invertedIndex\n      if (this.invertedIndex[term][fieldName][docRef] == undefined) {\n        this.invertedIndex[term][fieldName][docRef] = Object.create(null)\n      }\n\n      // store all whitelisted metadata about this token in the\n      // inverted index\n      for (var l = 0; l < this.metadataWhitelist.length; l++) {\n        var metadataKey = this.metadataWhitelist[l],\n            metadata = term.metadata[metadataKey]\n\n        if (this.invertedIndex[term][fieldName][docRef][metadataKey] == undefined) {\n          this.invertedIndex[term][fieldName][docRef][metadataKey] = []\n        }\n\n        this.invertedIndex[term][fieldName][docRef][metadataKey].push(metadata)\n      }\n    }\n\n  }\n}\n\n/**\n * Calculates the average document length for this index\n *\n * @private\n */\nlunr.Builder.prototype.calculateAverageFieldLengths = function () {\n\n  var fieldRefs = Object.keys(this.fieldLengths),\n      numberOfFields = fieldRefs.length,\n      accumulator = {},\n      documentsWithField = {}\n\n  for (var i = 0; i < numberOfFields; i++) {\n    var fieldRef = lunr.FieldRef.fromString(fieldRefs[i]),\n        field = fieldRef.fieldName\n\n    documentsWithField[field] || (documentsWithField[field] = 0)\n    documentsWithField[field] += 1\n\n    accumulator[field] || (accumulator[field] = 0)\n    accumulator[field] += this.fieldLengths[fieldRef]\n  }\n\n  var fields = Object.keys(this._fields)\n\n  for (var i = 0; i < fields.length; i++) {\n    var fieldName = fields[i]\n    accumulator[fieldName] = accumulator[fieldName] / documentsWithField[fieldName]\n  }\n\n  this.averageFieldLength = accumulator\n}\n\n/**\n * Builds a vector space model of every document using lunr.Vector\n *\n * @private\n */\nlunr.Builder.prototype.createFieldVectors = function () {\n  var fieldVectors = {},\n      fieldRefs = Object.keys(this.fieldTermFrequencies),\n      fieldRefsLength = fieldRefs.length,\n      termIdfCache = Object.create(null)\n\n  for (var i = 0; i < fieldRefsLength; i++) {\n    var fieldRef = lunr.FieldRef.fromString(fieldRefs[i]),\n        fieldName = fieldRef.fieldName,\n        fieldLength = this.fieldLengths[fieldRef],\n        fieldVector = new lunr.Vector,\n        termFrequencies = this.fieldTermFrequencies[fieldRef],\n        terms = Object.keys(termFrequencies),\n        termsLength = terms.length\n\n\n    var fieldBoost = this._fields[fieldName].boost || 1,\n        docBoost = this._documents[fieldRef.docRef].boost || 1\n\n    for (var j = 0; j < termsLength; j++) {\n      var term = terms[j],\n          tf = termFrequencies[term],\n          termIndex = this.invertedIndex[term]._index,\n          idf, score, scoreWithPrecision\n\n      if (termIdfCache[term] === undefined) {\n        idf = lunr.idf(this.invertedIndex[term], this.documentCount)\n        termIdfCache[term] = idf\n      } else {\n        idf = termIdfCache[term]\n      }\n\n      score = idf * ((this._k1 + 1) * tf) / (this._k1 * (1 - this._b + this._b * (fieldLength / this.averageFieldLength[fieldName])) + tf)\n      score *= fieldBoost\n      score *= docBoost\n      scoreWithPrecision = Math.round(score * 1000) / 1000\n      // Converts 1.23456789 to 1.234.\n      // Reducing the precision so that the vectors take up less\n      // space when serialised. Doing it now so that they behave\n      // the same before and after serialisation. Also, this is\n      // the fastest approach to reducing a number's precision in\n      // JavaScript.\n\n      fieldVector.insert(termIndex, scoreWithPrecision)\n    }\n\n    fieldVectors[fieldRef] = fieldVector\n  }\n\n  this.fieldVectors = fieldVectors\n}\n\n/**\n * Creates a token set of all tokens in the index using lunr.TokenSet\n *\n * @private\n */\nlunr.Builder.prototype.createTokenSet = function () {\n  this.tokenSet = lunr.TokenSet.fromArray(\n    Object.keys(this.invertedIndex).sort()\n  )\n}\n\n/**\n * Builds the index, creating an instance of lunr.Index.\n *\n * This completes the indexing process and should only be called\n * once all documents have been added to the index.\n *\n * @returns {lunr.Index}\n */\nlunr.Builder.prototype.build = function () {\n  this.calculateAverageFieldLengths()\n  this.createFieldVectors()\n  this.createTokenSet()\n\n  return new lunr.Index({\n    invertedIndex: this.invertedIndex,\n    fieldVectors: this.fieldVectors,\n    tokenSet: this.tokenSet,\n    fields: Object.keys(this._fields),\n    pipeline: this.searchPipeline\n  })\n}\n\n/**\n * Applies a plugin to the index builder.\n *\n * A plugin is a function that is called with the index builder as its context.\n * Plugins can be used to customise or extend the behaviour of the index\n * in some way. A plugin is just a function, that encapsulated the custom\n * behaviour that should be applied when building the index.\n *\n * The plugin function will be called with the index builder as its argument, additional\n * arguments can also be passed when calling use. The function will be called\n * with the index builder as its context.\n *\n * @param {Function} plugin The plugin to apply.\n */\nlunr.Builder.prototype.use = function (fn) {\n  var args = Array.prototype.slice.call(arguments, 1)\n  args.unshift(this)\n  fn.apply(this, args)\n}\n/**\n * Contains and collects metadata about a matching document.\n * A single instance of lunr.MatchData is returned as part of every\n * lunr.Index~Result.\n *\n * @constructor\n * @param {string} term - The term this match data is associated with\n * @param {string} field - The field in which the term was found\n * @param {object} metadata - The metadata recorded about this term in this field\n * @property {object} metadata - A cloned collection of metadata associated with this document.\n * @see {@link lunr.Index~Result}\n */\nlunr.MatchData = function (term, field, metadata) {\n  var clonedMetadata = Object.create(null),\n      metadataKeys = Object.keys(metadata || {})\n\n  // Cloning the metadata to prevent the original\n  // being mutated during match data combination.\n  // Metadata is kept in an array within the inverted\n  // index so cloning the data can be done with\n  // Array#slice\n  for (var i = 0; i < metadataKeys.length; i++) {\n    var key = metadataKeys[i]\n    clonedMetadata[key] = metadata[key].slice()\n  }\n\n  this.metadata = Object.create(null)\n\n  if (term !== undefined) {\n    this.metadata[term] = Object.create(null)\n    this.metadata[term][field] = clonedMetadata\n  }\n}\n\n/**\n * An instance of lunr.MatchData will be created for every term that matches a\n * document. However only one instance is required in a lunr.Index~Result. This\n * method combines metadata from another instance of lunr.MatchData with this\n * objects metadata.\n *\n * @param {lunr.MatchData} otherMatchData - Another instance of match data to merge with this one.\n * @see {@link lunr.Index~Result}\n */\nlunr.MatchData.prototype.combine = function (otherMatchData) {\n  var terms = Object.keys(otherMatchData.metadata)\n\n  for (var i = 0; i < terms.length; i++) {\n    var term = terms[i],\n        fields = Object.keys(otherMatchData.metadata[term])\n\n    if (this.metadata[term] == undefined) {\n      this.metadata[term] = Object.create(null)\n    }\n\n    for (var j = 0; j < fields.length; j++) {\n      var field = fields[j],\n          keys = Object.keys(otherMatchData.metadata[term][field])\n\n      if (this.metadata[term][field] == undefined) {\n        this.metadata[term][field] = Object.create(null)\n      }\n\n      for (var k = 0; k < keys.length; k++) {\n        var key = keys[k]\n\n        if (this.metadata[term][field][key] == undefined) {\n          this.metadata[term][field][key] = otherMatchData.metadata[term][field][key]\n        } else {\n          this.metadata[term][field][key] = this.metadata[term][field][key].concat(otherMatchData.metadata[term][field][key])\n        }\n\n      }\n    }\n  }\n}\n\n/**\n * Add metadata for a term/field pair to this instance of match data.\n *\n * @param {string} term - The term this match data is associated with\n * @param {string} field - The field in which the term was found\n * @param {object} metadata - The metadata recorded about this term in this field\n */\nlunr.MatchData.prototype.add = function (term, field, metadata) {\n  if (!(term in this.metadata)) {\n    this.metadata[term] = Object.create(null)\n    this.metadata[term][field] = metadata\n    return\n  }\n\n  if (!(field in this.metadata[term])) {\n    this.metadata[term][field] = metadata\n    return\n  }\n\n  var metadataKeys = Object.keys(metadata)\n\n  for (var i = 0; i < metadataKeys.length; i++) {\n    var key = metadataKeys[i]\n\n    if (key in this.metadata[term][field]) {\n      this.metadata[term][field][key] = this.metadata[term][field][key].concat(metadata[key])\n    } else {\n      this.metadata[term][field][key] = metadata[key]\n    }\n  }\n}\n/**\n * A lunr.Query provides a programmatic way of defining queries to be performed\n * against a {@link lunr.Index}.\n *\n * Prefer constructing a lunr.Query using the {@link lunr.Index#query} method\n * so the query object is pre-initialized with the right index fields.\n *\n * @constructor\n * @property {lunr.Query~Clause[]} clauses - An array of query clauses.\n * @property {string[]} allFields - An array of all available fields in a lunr.Index.\n */\nlunr.Query = function (allFields) {\n  this.clauses = []\n  this.allFields = allFields\n}\n\n/**\n * Constants for indicating what kind of automatic wildcard insertion will be used when constructing a query clause.\n *\n * This allows wildcards to be added to the beginning and end of a term without having to manually do any string\n * concatenation.\n *\n * The wildcard constants can be bitwise combined to select both leading and trailing wildcards.\n *\n * @constant\n * @default\n * @property {number} wildcard.NONE - The term will have no wildcards inserted, this is the default behaviour\n * @property {number} wildcard.LEADING - Prepend the term with a wildcard, unless a leading wildcard already exists\n * @property {number} wildcard.TRAILING - Append a wildcard to the term, unless a trailing wildcard already exists\n * @see lunr.Query~Clause\n * @see lunr.Query#clause\n * @see lunr.Query#term\n * @example <caption>query term with trailing wildcard</caption>\n * query.term('foo', { wildcard: lunr.Query.wildcard.TRAILING })\n * @example <caption>query term with leading and trailing wildcard</caption>\n * query.term('foo', {\n *   wildcard: lunr.Query.wildcard.LEADING | lunr.Query.wildcard.TRAILING\n * })\n */\n\nlunr.Query.wildcard = new String (\"*\")\nlunr.Query.wildcard.NONE = 0\nlunr.Query.wildcard.LEADING = 1\nlunr.Query.wildcard.TRAILING = 2\n\n/**\n * Constants for indicating what kind of presence a term must have in matching documents.\n *\n * @constant\n * @enum {number}\n * @see lunr.Query~Clause\n * @see lunr.Query#clause\n * @see lunr.Query#term\n * @example <caption>query term with required presence</caption>\n * query.term('foo', { presence: lunr.Query.presence.REQUIRED })\n */\nlunr.Query.presence = {\n  /**\n   * Term's presence in a document is optional, this is the default value.\n   */\n  OPTIONAL: 1,\n\n  /**\n   * Term's presence in a document is required, documents that do not contain\n   * this term will not be returned.\n   */\n  REQUIRED: 2,\n\n  /**\n   * Term's presence in a document is prohibited, documents that do contain\n   * this term will not be returned.\n   */\n  PROHIBITED: 3\n}\n\n/**\n * A single clause in a {@link lunr.Query} contains a term and details on how to\n * match that term against a {@link lunr.Index}.\n *\n * @typedef {Object} lunr.Query~Clause\n * @property {string[]} fields - The fields in an index this clause should be matched against.\n * @property {number} [boost=1] - Any boost that should be applied when matching this clause.\n * @property {number} [editDistance] - Whether the term should have fuzzy matching applied, and how fuzzy the match should be.\n * @property {boolean} [usePipeline] - Whether the term should be passed through the search pipeline.\n * @property {number} [wildcard=lunr.Query.wildcard.NONE] - Whether the term should have wildcards appended or prepended.\n * @property {number} [presence=lunr.Query.presence.OPTIONAL] - The terms presence in any matching documents.\n */\n\n/**\n * Adds a {@link lunr.Query~Clause} to this query.\n *\n * Unless the clause contains the fields to be matched all fields will be matched. In addition\n * a default boost of 1 is applied to the clause.\n *\n * @param {lunr.Query~Clause} clause - The clause to add to this query.\n * @see lunr.Query~Clause\n * @returns {lunr.Query}\n */\nlunr.Query.prototype.clause = function (clause) {\n  if (!('fields' in clause)) {\n    clause.fields = this.allFields\n  }\n\n  if (!('boost' in clause)) {\n    clause.boost = 1\n  }\n\n  if (!('usePipeline' in clause)) {\n    clause.usePipeline = true\n  }\n\n  if (!('wildcard' in clause)) {\n    clause.wildcard = lunr.Query.wildcard.NONE\n  }\n\n  if ((clause.wildcard & lunr.Query.wildcard.LEADING) && (clause.term.charAt(0) != lunr.Query.wildcard)) {\n    clause.term = \"*\" + clause.term\n  }\n\n  if ((clause.wildcard & lunr.Query.wildcard.TRAILING) && (clause.term.slice(-1) != lunr.Query.wildcard)) {\n    clause.term = \"\" + clause.term + \"*\"\n  }\n\n  if (!('presence' in clause)) {\n    clause.presence = lunr.Query.presence.OPTIONAL\n  }\n\n  this.clauses.push(clause)\n\n  return this\n}\n\n/**\n * A negated query is one in which every clause has a presence of\n * prohibited. These queries require some special processing to return\n * the expected results.\n *\n * @returns boolean\n */\nlunr.Query.prototype.isNegated = function () {\n  for (var i = 0; i < this.clauses.length; i++) {\n    if (this.clauses[i].presence != lunr.Query.presence.PROHIBITED) {\n      return false\n    }\n  }\n\n  return true\n}\n\n/**\n * Adds a term to the current query, under the covers this will create a {@link lunr.Query~Clause}\n * to the list of clauses that make up this query.\n *\n * The term is used as is, i.e. no tokenization will be performed by this method. Instead conversion\n * to a token or token-like string should be done before calling this method.\n *\n * The term will be converted to a string by calling `toString`. Multiple terms can be passed as an\n * array, each term in the array will share the same options.\n *\n * @param {object|object[]} term - The term(s) to add to the query.\n * @param {object} [options] - Any additional properties to add to the query clause.\n * @returns {lunr.Query}\n * @see lunr.Query#clause\n * @see lunr.Query~Clause\n * @example <caption>adding a single term to a query</caption>\n * query.term(\"foo\")\n * @example <caption>adding a single term to a query and specifying search fields, term boost and automatic trailing wildcard</caption>\n * query.term(\"foo\", {\n *   fields: [\"title\"],\n *   boost: 10,\n *   wildcard: lunr.Query.wildcard.TRAILING\n * })\n * @example <caption>using lunr.tokenizer to convert a string to tokens before using them as terms</caption>\n * query.term(lunr.tokenizer(\"foo bar\"))\n */\nlunr.Query.prototype.term = function (term, options) {\n  if (Array.isArray(term)) {\n    term.forEach(function (t) { this.term(t, lunr.utils.clone(options)) }, this)\n    return this\n  }\n\n  var clause = options || {}\n  clause.term = term.toString()\n\n  this.clause(clause)\n\n  return this\n}\nlunr.QueryParseError = function (message, start, end) {\n  this.name = \"QueryParseError\"\n  this.message = message\n  this.start = start\n  this.end = end\n}\n\nlunr.QueryParseError.prototype = new Error\nlunr.QueryLexer = function (str) {\n  this.lexemes = []\n  this.str = str\n  this.length = str.length\n  this.pos = 0\n  this.start = 0\n  this.escapeCharPositions = []\n}\n\nlunr.QueryLexer.prototype.run = function () {\n  var state = lunr.QueryLexer.lexText\n\n  while (state) {\n    state = state(this)\n  }\n}\n\nlunr.QueryLexer.prototype.sliceString = function () {\n  var subSlices = [],\n      sliceStart = this.start,\n      sliceEnd = this.pos\n\n  for (var i = 0; i < this.escapeCharPositions.length; i++) {\n    sliceEnd = this.escapeCharPositions[i]\n    subSlices.push(this.str.slice(sliceStart, sliceEnd))\n    sliceStart = sliceEnd + 1\n  }\n\n  subSlices.push(this.str.slice(sliceStart, this.pos))\n  this.escapeCharPositions.length = 0\n\n  return subSlices.join('')\n}\n\nlunr.QueryLexer.prototype.emit = function (type) {\n  this.lexemes.push({\n    type: type,\n    str: this.sliceString(),\n    start: this.start,\n    end: this.pos\n  })\n\n  this.start = this.pos\n}\n\nlunr.QueryLexer.prototype.escapeCharacter = function () {\n  this.escapeCharPositions.push(this.pos - 1)\n  this.pos += 1\n}\n\nlunr.QueryLexer.prototype.next = function () {\n  if (this.pos >= this.length) {\n    return lunr.QueryLexer.EOS\n  }\n\n  var char = this.str.charAt(this.pos)\n  this.pos += 1\n  return char\n}\n\nlunr.QueryLexer.prototype.width = function () {\n  return this.pos - this.start\n}\n\nlunr.QueryLexer.prototype.ignore = function () {\n  if (this.start == this.pos) {\n    this.pos += 1\n  }\n\n  this.start = this.pos\n}\n\nlunr.QueryLexer.prototype.backup = function () {\n  this.pos -= 1\n}\n\nlunr.QueryLexer.prototype.acceptDigitRun = function () {\n  var char, charCode\n\n  do {\n    char = this.next()\n    charCode = char.charCodeAt(0)\n  } while (charCode > 47 && charCode < 58)\n\n  if (char != lunr.QueryLexer.EOS) {\n    this.backup()\n  }\n}\n\nlunr.QueryLexer.prototype.more = function () {\n  return this.pos < this.length\n}\n\nlunr.QueryLexer.EOS = 'EOS'\nlunr.QueryLexer.FIELD = 'FIELD'\nlunr.QueryLexer.TERM = 'TERM'\nlunr.QueryLexer.EDIT_DISTANCE = 'EDIT_DISTANCE'\nlunr.QueryLexer.BOOST = 'BOOST'\nlunr.QueryLexer.PRESENCE = 'PRESENCE'\n\nlunr.QueryLexer.lexField = function (lexer) {\n  lexer.backup()\n  lexer.emit(lunr.QueryLexer.FIELD)\n  lexer.ignore()\n  return lunr.QueryLexer.lexText\n}\n\nlunr.QueryLexer.lexTerm = function (lexer) {\n  if (lexer.width() > 1) {\n    lexer.backup()\n    lexer.emit(lunr.QueryLexer.TERM)\n  }\n\n  lexer.ignore()\n\n  if (lexer.more()) {\n    return lunr.QueryLexer.lexText\n  }\n}\n\nlunr.QueryLexer.lexEditDistance = function (lexer) {\n  lexer.ignore()\n  lexer.acceptDigitRun()\n  lexer.emit(lunr.QueryLexer.EDIT_DISTANCE)\n  return lunr.QueryLexer.lexText\n}\n\nlunr.QueryLexer.lexBoost = function (lexer) {\n  lexer.ignore()\n  lexer.acceptDigitRun()\n  lexer.emit(lunr.QueryLexer.BOOST)\n  return lunr.QueryLexer.lexText\n}\n\nlunr.QueryLexer.lexEOS = function (lexer) {\n  if (lexer.width() > 0) {\n    lexer.emit(lunr.QueryLexer.TERM)\n  }\n}\n\n// This matches the separator used when tokenising fields\n// within a document. These should match otherwise it is\n// not possible to search for some tokens within a document.\n//\n// It is possible for the user to change the separator on the\n// tokenizer so it _might_ clash with any other of the special\n// characters already used within the search string, e.g. :.\n//\n// This means that it is possible to change the separator in\n// such a way that makes some words unsearchable using a search\n// string.\nlunr.QueryLexer.termSeparator = lunr.tokenizer.separator\n\nlunr.QueryLexer.lexText = function (lexer) {\n  while (true) {\n    var char = lexer.next()\n\n    if (char == lunr.QueryLexer.EOS) {\n      return lunr.QueryLexer.lexEOS\n    }\n\n    // Escape character is '\\'\n    if (char.charCodeAt(0) == 92) {\n      lexer.escapeCharacter()\n      continue\n    }\n\n    if (char == \":\") {\n      return lunr.QueryLexer.lexField\n    }\n\n    if (char == \"~\") {\n      lexer.backup()\n      if (lexer.width() > 0) {\n        lexer.emit(lunr.QueryLexer.TERM)\n      }\n      return lunr.QueryLexer.lexEditDistance\n    }\n\n    if (char == \"^\") {\n      lexer.backup()\n      if (lexer.width() > 0) {\n        lexer.emit(lunr.QueryLexer.TERM)\n      }\n      return lunr.QueryLexer.lexBoost\n    }\n\n    // \"+\" indicates term presence is required\n    // checking for length to ensure that only\n    // leading \"+\" are considered\n    if (char == \"+\" && lexer.width() === 1) {\n      lexer.emit(lunr.QueryLexer.PRESENCE)\n      return lunr.QueryLexer.lexText\n    }\n\n    // \"-\" indicates term presence is prohibited\n    // checking for length to ensure that only\n    // leading \"-\" are considered\n    if (char == \"-\" && lexer.width() === 1) {\n      lexer.emit(lunr.QueryLexer.PRESENCE)\n      return lunr.QueryLexer.lexText\n    }\n\n    if (char.match(lunr.QueryLexer.termSeparator)) {\n      return lunr.QueryLexer.lexTerm\n    }\n  }\n}\n\nlunr.QueryParser = function (str, query) {\n  this.lexer = new lunr.QueryLexer (str)\n  this.query = query\n  this.currentClause = {}\n  this.lexemeIdx = 0\n}\n\nlunr.QueryParser.prototype.parse = function () {\n  this.lexer.run()\n  this.lexemes = this.lexer.lexemes\n\n  var state = lunr.QueryParser.parseClause\n\n  while (state) {\n    state = state(this)\n  }\n\n  return this.query\n}\n\nlunr.QueryParser.prototype.peekLexeme = function () {\n  return this.lexemes[this.lexemeIdx]\n}\n\nlunr.QueryParser.prototype.consumeLexeme = function () {\n  var lexeme = this.peekLexeme()\n  this.lexemeIdx += 1\n  return lexeme\n}\n\nlunr.QueryParser.prototype.nextClause = function () {\n  var completedClause = this.currentClause\n  this.query.clause(completedClause)\n  this.currentClause = {}\n}\n\nlunr.QueryParser.parseClause = function (parser) {\n  var lexeme = parser.peekLexeme()\n\n  if (lexeme == undefined) {\n    return\n  }\n\n  switch (lexeme.type) {\n    case lunr.QueryLexer.PRESENCE:\n      return lunr.QueryParser.parsePresence\n    case lunr.QueryLexer.FIELD:\n      return lunr.QueryParser.parseField\n    case lunr.QueryLexer.TERM:\n      return lunr.QueryParser.parseTerm\n    default:\n      var errorMessage = \"expected either a field or a term, found \" + lexeme.type\n\n      if (lexeme.str.length >= 1) {\n        errorMessage += \" with value '\" + lexeme.str + \"'\"\n      }\n\n      throw new lunr.QueryParseError (errorMessage, lexeme.start, lexeme.end)\n  }\n}\n\nlunr.QueryParser.parsePresence = function (parser) {\n  var lexeme = parser.consumeLexeme()\n\n  if (lexeme == undefined) {\n    return\n  }\n\n  switch (lexeme.str) {\n    case \"-\":\n      parser.currentClause.presence = lunr.Query.presence.PROHIBITED\n      break\n    case \"+\":\n      parser.currentClause.presence = lunr.Query.presence.REQUIRED\n      break\n    default:\n      var errorMessage = \"unrecognised presence operator'\" + lexeme.str + \"'\"\n      throw new lunr.QueryParseError (errorMessage, lexeme.start, lexeme.end)\n  }\n\n  var nextLexeme = parser.peekLexeme()\n\n  if (nextLexeme == undefined) {\n    var errorMessage = \"expecting term or field, found nothing\"\n    throw new lunr.QueryParseError (errorMessage, lexeme.start, lexeme.end)\n  }\n\n  switch (nextLexeme.type) {\n    case lunr.QueryLexer.FIELD:\n      return lunr.QueryParser.parseField\n    case lunr.QueryLexer.TERM:\n      return lunr.QueryParser.parseTerm\n    default:\n      var errorMessage = \"expecting term or field, found '\" + nextLexeme.type + \"'\"\n      throw new lunr.QueryParseError (errorMessage, nextLexeme.start, nextLexeme.end)\n  }\n}\n\nlunr.QueryParser.parseField = function (parser) {\n  var lexeme = parser.consumeLexeme()\n\n  if (lexeme == undefined) {\n    return\n  }\n\n  if (parser.query.allFields.indexOf(lexeme.str) == -1) {\n    var possibleFields = parser.query.allFields.map(function (f) { return \"'\" + f + \"'\" }).join(', '),\n        errorMessage = \"unrecognised field '\" + lexeme.str + \"', possible fields: \" + possibleFields\n\n    throw new lunr.QueryParseError (errorMessage, lexeme.start, lexeme.end)\n  }\n\n  parser.currentClause.fields = [lexeme.str]\n\n  var nextLexeme = parser.peekLexeme()\n\n  if (nextLexeme == undefined) {\n    var errorMessage = \"expecting term, found nothing\"\n    throw new lunr.QueryParseError (errorMessage, lexeme.start, lexeme.end)\n  }\n\n  switch (nextLexeme.type) {\n    case lunr.QueryLexer.TERM:\n      return lunr.QueryParser.parseTerm\n    default:\n      var errorMessage = \"expecting term, found '\" + nextLexeme.type + \"'\"\n      throw new lunr.QueryParseError (errorMessage, nextLexeme.start, nextLexeme.end)\n  }\n}\n\nlunr.QueryParser.parseTerm = function (parser) {\n  var lexeme = parser.consumeLexeme()\n\n  if (lexeme == undefined) {\n    return\n  }\n\n  parser.currentClause.term = lexeme.str.toLowerCase()\n\n  if (lexeme.str.indexOf(\"*\") != -1) {\n    parser.currentClause.usePipeline = false\n  }\n\n  var nextLexeme = parser.peekLexeme()\n\n  if (nextLexeme == undefined) {\n    parser.nextClause()\n    return\n  }\n\n  switch (nextLexeme.type) {\n    case lunr.QueryLexer.TERM:\n      parser.nextClause()\n      return lunr.QueryParser.parseTerm\n    case lunr.QueryLexer.FIELD:\n      parser.nextClause()\n      return lunr.QueryParser.parseField\n    case lunr.QueryLexer.EDIT_DISTANCE:\n      return lunr.QueryParser.parseEditDistance\n    case lunr.QueryLexer.BOOST:\n      return lunr.QueryParser.parseBoost\n    case lunr.QueryLexer.PRESENCE:\n      parser.nextClause()\n      return lunr.QueryParser.parsePresence\n    default:\n      var errorMessage = \"Unexpected lexeme type '\" + nextLexeme.type + \"'\"\n      throw new lunr.QueryParseError (errorMessage, nextLexeme.start, nextLexeme.end)\n  }\n}\n\nlunr.QueryParser.parseEditDistance = function (parser) {\n  var lexeme = parser.consumeLexeme()\n\n  if (lexeme == undefined) {\n    return\n  }\n\n  var editDistance = parseInt(lexeme.str, 10)\n\n  if (isNaN(editDistance)) {\n    var errorMessage = \"edit distance must be numeric\"\n    throw new lunr.QueryParseError (errorMessage, lexeme.start, lexeme.end)\n  }\n\n  parser.currentClause.editDistance = editDistance\n\n  var nextLexeme = parser.peekLexeme()\n\n  if (nextLexeme == undefined) {\n    parser.nextClause()\n    return\n  }\n\n  switch (nextLexeme.type) {\n    case lunr.QueryLexer.TERM:\n      parser.nextClause()\n      return lunr.QueryParser.parseTerm\n    case lunr.QueryLexer.FIELD:\n      parser.nextClause()\n      return lunr.QueryParser.parseField\n    case lunr.QueryLexer.EDIT_DISTANCE:\n      return lunr.QueryParser.parseEditDistance\n    case lunr.QueryLexer.BOOST:\n      return lunr.QueryParser.parseBoost\n    case lunr.QueryLexer.PRESENCE:\n      parser.nextClause()\n      return lunr.QueryParser.parsePresence\n    default:\n      var errorMessage = \"Unexpected lexeme type '\" + nextLexeme.type + \"'\"\n      throw new lunr.QueryParseError (errorMessage, nextLexeme.start, nextLexeme.end)\n  }\n}\n\nlunr.QueryParser.parseBoost = function (parser) {\n  var lexeme = parser.consumeLexeme()\n\n  if (lexeme == undefined) {\n    return\n  }\n\n  var boost = parseInt(lexeme.str, 10)\n\n  if (isNaN(boost)) {\n    var errorMessage = \"boost must be numeric\"\n    throw new lunr.QueryParseError (errorMessage, lexeme.start, lexeme.end)\n  }\n\n  parser.currentClause.boost = boost\n\n  var nextLexeme = parser.peekLexeme()\n\n  if (nextLexeme == undefined) {\n    parser.nextClause()\n    return\n  }\n\n  switch (nextLexeme.type) {\n    case lunr.QueryLexer.TERM:\n      parser.nextClause()\n      return lunr.QueryParser.parseTerm\n    case lunr.QueryLexer.FIELD:\n      parser.nextClause()\n      return lunr.QueryParser.parseField\n    case lunr.QueryLexer.EDIT_DISTANCE:\n      return lunr.QueryParser.parseEditDistance\n    case lunr.QueryLexer.BOOST:\n      return lunr.QueryParser.parseBoost\n    case lunr.QueryLexer.PRESENCE:\n      parser.nextClause()\n      return lunr.QueryParser.parsePresence\n    default:\n      var errorMessage = \"Unexpected lexeme type '\" + nextLexeme.type + \"'\"\n      throw new lunr.QueryParseError (errorMessage, nextLexeme.start, nextLexeme.end)\n  }\n}\n\n  /**\n   * export the module via AMD, CommonJS or as a browser global\n   * Export code from https://github.com/umdjs/umd/blob/master/returnExports.js\n   */\n  ;(function (root, factory) {\n    if (typeof define === 'function' && define.amd) {\n      // AMD. Register as an anonymous module.\n      define(factory)\n    } else if (typeof exports === 'object') {\n      /**\n       * Node. Does not work with strict CommonJS, but\n       * only CommonJS-like enviroments that support module.exports,\n       * like Node.\n       */\n      module.exports = factory()\n    } else {\n      // Browser globals (root is window)\n      root.lunr = factory()\n    }\n  }(this, function () {\n    /**\n     * Just return a value to define the module export.\n     * This example returns an object, but the module\n     * can return a function as the exported value.\n     */\n    return lunr\n  }))\n})();\n", "/*!\n * escape-html\n * Copyright(c) 2012-2013 TJ Holowaychuk\n * Copyright(c) 2015 Andreas Lubbe\n * Copyright(c) 2015 Tiancheng \"Timothy\" Gu\n * MIT Licensed\n */\n\n'use strict';\n\n/**\n * Module variables.\n * @private\n */\n\nvar matchHtmlRegExp = /[\"'&<>]/;\n\n/**\n * Module exports.\n * @public\n */\n\nmodule.exports = escapeHtml;\n\n/**\n * Escape special characters in the given string of html.\n *\n * @param  {string} string The string to escape for inserting into HTML\n * @return {string}\n * @public\n */\n\nfunction escapeHtml(string) {\n  var str = '' + string;\n  var match = matchHtmlRegExp.exec(str);\n\n  if (!match) {\n    return str;\n  }\n\n  var escape;\n  var html = '';\n  var index = 0;\n  var lastIndex = 0;\n\n  for (index = match.index; index < str.length; index++) {\n    switch (str.charCodeAt(index)) {\n      case 34: // \"\n        escape = '&quot;';\n        break;\n      case 38: // &\n        escape = '&amp;';\n        break;\n      case 39: // '\n        escape = '&#39;';\n        break;\n      case 60: // <\n        escape = '&lt;';\n        break;\n      case 62: // >\n        escape = '&gt;';\n        break;\n      default:\n        continue;\n    }\n\n    if (lastIndex !== index) {\n      html += str.substring(lastIndex, index);\n    }\n\n    lastIndex = index + 1;\n    html += escape;\n  }\n\n  return lastIndex !== index\n    ? html + str.substring(lastIndex, index)\n    : html;\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A RTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport lunr from \"lunr\"\n\nimport \"~/polyfills\"\n\nimport { Search, SearchIndexConfig } from \"../../_\"\nimport {\n  SearchMessage,\n  SearchMessageType\n} from \"../message\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Add support for usage with `iframe-worker` polyfill\n *\n * While `importScripts` is synchronous when executed inside of a web worker,\n * it's not possible to provide a synchronous polyfilled implementation. The\n * cool thing is that awaiting a non-Promise is a noop, so extending the type\n * definition to return a `Promise` shouldn't break anything.\n *\n * @see https://bit.ly/2PjDnXi - GitHub comment\n */\ndeclare global {\n  function importScripts(...urls: string[]): Promise<void> | void\n}\n\n/* ----------------------------------------------------------------------------\n * Data\n * ------------------------------------------------------------------------- */\n\n/**\n * Search index\n */\nlet index: Search\n\n/* ----------------------------------------------------------------------------\n * Helper functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Fetch (= import) multi-language support through `lunr-languages`\n *\n * This function automatically imports the stemmers necessary to process the\n * languages, which are defined through the search index configuration.\n *\n * If the worker runs inside of an `iframe` (when using `iframe-worker` as\n * a shim), the base URL for the stemmers to be loaded must be determined by\n * searching for the first `script` element with a `src` attribute, which will\n * contain the contents of this script.\n *\n * @param config - Search index configuration\n *\n * @returns Promise resolving with no result\n */\nasync function setupSearchLanguages(\n  config: SearchIndexConfig\n): Promise<void> {\n  let base = \"../lunr\"\n\n  /* Detect `iframe-worker` and fix base URL */\n  if (typeof parent !== \"undefined\" && \"IFrameWorker\" in parent) {\n    const worker = document.querySelector<HTMLScriptElement>(\"script[src]\")!\n    const [path] = worker.src.split(\"/worker\")\n\n    /* Prefix base with path */\n    base = base.replace(\"..\", path)\n  }\n\n  /* Add scripts for languages */\n  const scripts = []\n  for (const lang of config.lang) {\n    switch (lang) {\n\n      /* Add segmenter for Japanese */\n      case \"ja\":\n        scripts.push(`${base}/tinyseg.js`)\n        break\n\n      /* Add segmenter for Hindi and Thai */\n      case \"hi\":\n      case \"th\":\n        scripts.push(`${base}/wordcut.js`)\n        break\n    }\n\n    /* Add language support */\n    if (lang !== \"en\")\n      scripts.push(`${base}/min/lunr.${lang}.min.js`)\n  }\n\n  /* Add multi-language support */\n  if (config.lang.length > 1)\n    scripts.push(`${base}/min/lunr.multi.min.js`)\n\n  /* Load scripts synchronously */\n  if (scripts.length)\n    await importScripts(\n      `${base}/min/lunr.stemmer.support.min.js`,\n      ...scripts\n    )\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Message handler\n *\n * @param message - Source message\n *\n * @returns Target message\n */\nexport async function handler(\n  message: SearchMessage\n): Promise<SearchMessage> {\n  switch (message.type) {\n\n    /* Search setup message */\n    case SearchMessageType.SETUP:\n      await setupSearchLanguages(message.data.config)\n      index = new Search(message.data)\n      return {\n        type: SearchMessageType.READY\n      }\n\n    /* Search query message */\n    case SearchMessageType.QUERY:\n      return {\n        type: SearchMessageType.RESULT,\n        data: index ? index.search(message.data) : { items: [] }\n      }\n\n    /* All other messages */\n    default:\n      throw new TypeError(\"Invalid message type\")\n  }\n}\n\n/* ----------------------------------------------------------------------------\n * Worker\n * ------------------------------------------------------------------------- */\n\n/* @ts-expect-error - expose Lunr.js in global scope, or stemmers won't work */\nself.lunr = lunr\n\n/* Handle messages */\naddEventListener(\"message\", async ev => {\n  postMessage(await handler(ev.data))\n})\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\n/* ----------------------------------------------------------------------------\n * Polyfills\n * ------------------------------------------------------------------------- */\n\n/* Polyfill `Object.entries` */\nif (!Object.entries)\n  Object.entries = function (obj: object) {\n    const data: [string, string][] = []\n    for (const key of Object.keys(obj))\n      // @ts-expect-error - ignore property access warning\n      data.push([key, obj[key]])\n\n    /* Return entries */\n    return data\n  }\n\n/* Polyfill `Object.values` */\nif (!Object.values)\n  Object.values = function (obj: object) {\n    const data: string[] = []\n    for (const key of Object.keys(obj))\n      // @ts-expect-error - ignore property access warning\n      data.push(obj[key])\n\n    /* Return values */\n    return data\n  }\n\n/* ------------------------------------------------------------------------- */\n\n/* Polyfills for `Element` */\nif (typeof Element !== \"undefined\") {\n\n  /* Polyfill `Element.scrollTo` */\n  if (!Element.prototype.scrollTo)\n    Element.prototype.scrollTo = function (\n      x?: ScrollToOptions | number, y?: number\n    ): void {\n      if (typeof x === \"object\") {\n        this.scrollLeft = x.left!\n        this.scrollTop = x.top!\n      } else {\n        this.scrollLeft = x!\n        this.scrollTop = y!\n      }\n    }\n\n  /* Polyfill `Element.replaceWith` */\n  if (!Element.prototype.replaceWith)\n    Element.prototype.replaceWith = function (\n      ...nodes: Array<string | Node>\n    ): void {\n      const parent = this.parentNode\n      if (parent) {\n        if (nodes.length === 0)\n          parent.removeChild(this)\n\n        /* Replace children and create text nodes */\n        for (let i = nodes.length - 1; i >= 0; i--) {\n          let node = nodes[i]\n          if (typeof node !== \"object\")\n            node = document.createTextNode(node)\n          else if (node.parentNode)\n            node.parentNode.removeChild(node)\n\n          /* Replace child or insert before previous sibling */\n          if (!i)\n            parent.replaceChild(node, this)\n          else\n            parent.insertBefore(this.previousSibling!, node)\n        }\n      }\n    }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport escapeHTML from \"escape-html\"\n\nimport { SearchIndexDocument } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search document\n */\nexport interface SearchDocument extends SearchIndexDocument {\n  parent?: SearchIndexDocument         /* Parent article */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Search document mapping\n */\nexport type SearchDocumentMap = Map<string, SearchDocument>\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Create a search document mapping\n *\n * @param docs - Search index documents\n *\n * @returns Search document map\n */\nexport function setupSearchDocumentMap(\n  docs: SearchIndexDocument[]\n): SearchDocumentMap {\n  const documents = new Map<string, SearchDocument>()\n  const parents   = new Set<SearchDocument>()\n  for (const doc of docs) {\n    const [path, hash] = doc.location.split(\"#\")\n\n    /* Extract location, title and tags */\n    const location = doc.location\n    const title    = doc.title\n    const tags     = doc.tags\n\n    /* Escape and cleanup text */\n    const text = escapeHTML(doc.text)\n      .replace(/\\s+(?=[,.:;!?])/g, \"\")\n      .replace(/\\s+/g, \" \")\n\n    /* Handle section */\n    if (hash) {\n      const parent = documents.get(path)!\n\n      /* Ignore first section, override article */\n      if (!parents.has(parent)) {\n        parent.title = doc.title\n        parent.text  = text\n\n        /* Remember that we processed the article */\n        parents.add(parent)\n\n      /* Add subsequent section */\n      } else {\n        documents.set(location, {\n          location,\n          title,\n          text,\n          parent\n        })\n      }\n\n    /* Add article */\n    } else {\n      documents.set(location, {\n        location,\n        title,\n        text,\n        ...tags && { tags }\n      })\n    }\n  }\n  return documents\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport escapeHTML from \"escape-html\"\n\nimport { SearchIndexConfig } from \"../_\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search highlight function\n *\n * @param value - Value\n *\n * @returns Highlighted value\n */\nexport type SearchHighlightFn = (value: string) => string\n\n/**\n * Search highlight factory function\n *\n * @param query - Query value\n *\n * @returns Search highlight function\n */\nexport type SearchHighlightFactoryFn = (query: string) => SearchHighlightFn\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Create a search highlighter\n *\n * @param config - Search index configuration\n * @param escape - Whether to escape HTML\n *\n * @returns Search highlight factory function\n */\nexport function setupSearchHighlighter(\n  config: SearchIndexConfig, escape: boolean\n): SearchHighlightFactoryFn {\n  const separator = new RegExp(config.separator, \"img\")\n  const highlight = (_: unknown, data: string, term: string) => {\n    return `${data}<mark data-md-highlight>${term}</mark>`\n  }\n\n  /* Return factory function */\n  return (query: string) => {\n    query = query\n      .replace(/[\\s*+\\-:~^]+/g, \" \")\n      .trim()\n\n    /* Create search term match expression */\n    const match = new RegExp(`(^|${config.separator})(${\n      query\n        .replace(/[|\\\\{}()[\\]^$+*?.-]/g, \"\\\\$&\")\n        .replace(separator, \"|\")\n    })`, \"img\")\n\n    /* Highlight string value */\n    return value => (\n      escape\n        ? escapeHTML(value)\n        : value\n      )\n        .replace(match, highlight)\n        .replace(/<\\/mark>(\\s+)<mark[^>]*>/img, \"$1\")\n  }\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search query clause\n */\nexport interface SearchQueryClause {\n  presence: lunr.Query.presence        /* Clause presence */\n  term: string                         /* Clause term */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Search query terms\n */\nexport type SearchQueryTerms = Record<string, boolean>\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Parse a search query for analysis\n *\n * @param value - Query value\n *\n * @returns Search query clauses\n */\nexport function parseSearchQuery(\n  value: string\n): SearchQueryClause[] {\n  const query  = new (lunr as any).Query([\"title\", \"text\"])\n  const parser = new (lunr as any).QueryParser(value, query)\n\n  /* Parse and return query clauses */\n  parser.parse()\n  return query.clauses\n}\n\n/**\n * Analyze the search query clauses in regard to the search terms found\n *\n * @param query - Search query clauses\n * @param terms - Search terms\n *\n * @returns Search query terms\n */\nexport function getSearchQueryTerms(\n  query: SearchQueryClause[], terms: string[]\n): SearchQueryTerms {\n  const clauses = new Set<SearchQueryClause>(query)\n\n  /* Match query clauses against terms */\n  const result: SearchQueryTerms = {}\n  for (let t = 0; t < terms.length; t++)\n    for (const clause of clauses)\n      if (terms[t].startsWith(clause.term)) {\n        result[clause.term] = true\n        clauses.delete(clause)\n      }\n\n  /* Annotate unmatched non-stopword query clauses */\n  for (const clause of clauses)\n    if (lunr.stopWordFilter?.(clause.term as any))\n      result[clause.term] = false\n\n  /* Return query terms */\n  return result\n}\n", "/*\n * Copyright (c) 2016-2022 Martin Donath <martin.donath@squidfunk.com>\n *\n * Permission is hereby granted, free of charge, to any person obtaining a copy\n * of this software and associated documentation files (the \"Software\"), to\n * deal in the Software without restriction, including without limitation the\n * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or\n * sell copies of the Software, and to permit persons to whom the Software is\n * furnished to do so, subject to the following conditions:\n *\n * The above copyright notice and this permission notice shall be included in\n * all copies or substantial portions of the Software.\n *\n * THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n * FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE\n * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n * IN THE SOFTWARE.\n */\n\nimport {\n  SearchDocument,\n  SearchDocumentMap,\n  setupSearchDocumentMap\n} from \"../document\"\nimport {\n  SearchHighlightFactoryFn,\n  setupSearchHighlighter\n} from \"../highlighter\"\nimport { SearchOptions } from \"../options\"\nimport {\n  SearchQueryTerms,\n  getSearchQueryTerms,\n  parseSearchQuery\n} from \"../query\"\n\n/* ----------------------------------------------------------------------------\n * Types\n * ------------------------------------------------------------------------- */\n\n/**\n * Search index configuration\n */\nexport interface SearchIndexConfig {\n  lang: string[]                       /* Search languages */\n  separator: string                    /* Search separator */\n}\n\n/**\n * Search index document\n */\nexport interface SearchIndexDocument {\n  location: string                     /* Document location */\n  title: string                        /* Document title */\n  text: string                         /* Document text */\n  tags?: string[]                      /* Document tags */\n  boost?: number                       /* Document boost */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Search index\n *\n * This interfaces describes the format of the `search_index.json` file which\n * is automatically built by the MkDocs search plugin.\n */\nexport interface SearchIndex {\n  config: SearchIndexConfig            /* Search index configuration */\n  docs: SearchIndexDocument[]          /* Search index documents */\n  options: SearchOptions               /* Search options */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Search metadata\n */\nexport interface SearchMetadata {\n  score: number                        /* Score (relevance) */\n  terms: SearchQueryTerms              /* Search query terms */\n}\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Search result document\n */\nexport type SearchResultDocument = SearchDocument & SearchMetadata\n\n/**\n * Search result item\n */\nexport type SearchResultItem = SearchResultDocument[]\n\n/* ------------------------------------------------------------------------- */\n\n/**\n * Search result\n */\nexport interface SearchResult {\n  items: SearchResultItem[]            /* Search result items */\n  suggestions?: string[]               /* Search suggestions */\n}\n\n/* ----------------------------------------------------------------------------\n * Functions\n * ------------------------------------------------------------------------- */\n\n/**\n * Compute the difference of two lists of strings\n *\n * @param a - 1st list of strings\n * @param b - 2nd list of strings\n *\n * @returns Difference\n */\nfunction difference(a: string[], b: string[]): string[] {\n  const [x, y] = [new Set(a), new Set(b)]\n  return [\n    ...new Set([...x].filter(value => !y.has(value)))\n  ]\n}\n\n/* ----------------------------------------------------------------------------\n * Class\n * ------------------------------------------------------------------------- */\n\n/**\n * Search index\n */\nexport class Search {\n\n  /**\n   * Search document mapping\n   *\n   * A mapping of URLs (including hash fragments) to the actual articles and\n   * sections of the documentation. The search document mapping must be created\n   * regardless of whether the index was prebuilt or not, as Lunr.js itself\n   * only stores the actual index.\n   */\n  protected documents: SearchDocumentMap\n\n  /**\n   * Search highlight factory function\n   */\n  protected highlight: SearchHighlightFactoryFn\n\n  /**\n   * The underlying Lunr.js search index\n   */\n  protected index: lunr.Index\n\n  /**\n   * Search options\n   */\n  protected options: SearchOptions\n\n  /**\n   * Create the search integration\n   *\n   * @param data - Search index\n   */\n  public constructor({ config, docs, options }: SearchIndex) {\n    this.options = options\n\n    /* Set up document map and highlighter factory */\n    this.documents = setupSearchDocumentMap(docs)\n    this.highlight = setupSearchHighlighter(config, false)\n\n    /* Set separator for tokenizer */\n    lunr.tokenizer.separator = new RegExp(config.separator)\n\n    /* Create search index */\n    this.index = lunr(function () {\n\n      /* Set up multi-language support */\n      if (config.lang.length === 1 && config.lang[0] !== \"en\") {\n        this.use((lunr as any)[config.lang[0]])\n      } else if (config.lang.length > 1) {\n        this.use((lunr as any).multiLanguage(...config.lang))\n      }\n\n      /* Compute functions to be removed from the pipeline */\n      const fns = difference([\n        \"trimmer\", \"stopWordFilter\", \"stemmer\"\n      ], options.pipeline)\n\n      /* Remove functions from the pipeline for registered languages */\n      for (const lang of config.lang.map(language => (\n        language === \"en\" ? lunr : (lunr as any)[language]\n      ))) {\n        for (const fn of fns) {\n          this.pipeline.remove(lang[fn])\n          this.searchPipeline.remove(lang[fn])\n        }\n      }\n\n      /* Set up reference */\n      this.ref(\"location\")\n\n      /* Set up fields */\n      this.field(\"title\", { boost: 1e3 })\n      this.field(\"text\")\n      this.field(\"tags\", { boost: 1e6, extractor: doc => {\n        const { tags = [] } = doc as SearchDocument\n        return tags.reduce((list, tag) => [\n          ...list,\n          ...lunr.tokenizer(tag)\n        ], [] as lunr.Token[])\n      } })\n\n      /* Index documents */\n      for (const doc of docs)\n        this.add(doc, { boost: doc.boost })\n    })\n  }\n\n  /**\n   * Search for matching documents\n   *\n   * The search index which MkDocs provides is divided up into articles, which\n   * contain the whole content of the individual pages, and sections, which only\n   * contain the contents of the subsections obtained by breaking the individual\n   * pages up at `h1` ... `h6`. As there may be many sections on different pages\n   * with identical titles (for example within this very project, e.g. \"Usage\"\n   * or \"Installation\"), they need to be put into the context of the containing\n   * page. For this reason, section results are grouped within their respective\n   * articles which are the top-level results that are returned.\n   *\n   * @param query - Query value\n   *\n   * @returns Search results\n   */\n  public search(query: string): SearchResult {\n    if (query) {\n      try {\n        const highlight = this.highlight(query)\n\n        /* Parse query to extract clauses for analysis */\n        const clauses = parseSearchQuery(query)\n          .filter(clause => (\n            clause.presence !== lunr.Query.presence.PROHIBITED\n          ))\n\n        /* Perform search and post-process results */\n        const groups = this.index.search(`${query}*`)\n\n          /* Apply post-query boosts based on title and search query terms */\n          .reduce<SearchResultItem>((item, { ref, score, matchData }) => {\n            const document = this.documents.get(ref)\n            if (typeof document !== \"undefined\") {\n              const { location, title, text, tags, parent } = document\n\n              /* Compute and analyze search query terms */\n              const terms = getSearchQueryTerms(\n                clauses,\n                Object.keys(matchData.metadata)\n              )\n\n              /* Highlight title and text and apply post-query boosts */\n              const boost = +!parent + +Object.values(terms).every(t => t)\n              item.push({\n                location,\n                title: highlight(title),\n                text:  highlight(text),\n                ...tags && { tags: tags.map(highlight) },\n                score: score * (1 + boost),\n                terms\n              })\n            }\n            return item\n          }, [])\n\n          /* Sort search results again after applying boosts */\n          .sort((a, b) => b.score - a.score)\n\n          /* Group search results by page */\n          .reduce((items, result) => {\n            const document = this.documents.get(result.location)\n            if (typeof document !== \"undefined\") {\n              const ref = \"parent\" in document\n                ? document.parent!.location\n                : document.location\n              items.set(ref, [...items.get(ref) || [], result])\n            }\n            return items\n          }, new Map<string, SearchResultItem>())\n\n        /* Generate search suggestions, if desired */\n        let suggestions: string[] | undefined\n        if (this.options.suggestions) {\n          const titles = this.index.query(builder => {\n            for (const clause of clauses)\n              builder.term(clause.term, {\n                fields: [\"title\"],\n                presence: lunr.Query.presence.REQUIRED,\n                wildcard: lunr.Query.wildcard.TRAILING\n              })\n          })\n\n          /* Retrieve suggestions for best match */\n          suggestions = titles.length\n            ? Object.keys(titles[0].matchData.metadata)\n            : []\n        }\n\n        /* Return items and suggestions */\n        return {\n          items: [...groups.values()],\n          ...typeof suggestions !== \"undefined\" && { suggestions }\n        }\n\n      /* Log errors to console (for now) */\n      } catch {\n        console.warn(`Invalid query: ${query} \u2013 see https://bit.ly/2s3ChXG`)\n      }\n    }\n\n    /* Return nothing in case of error or empty query */\n    return { items: [] }\n  }\n}\n"],
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diff --git a/docs/assets/stylesheets/main.1d29e8d0.min.css b/docs/assets/stylesheets/main.1d29e8d0.min.css
deleted file mode 100644
index 2730c642..00000000
--- a/docs/assets/stylesheets/main.1d29e8d0.min.css
+++ /dev/null
@@ -1 +0,0 @@
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diff --git a/docs/assets/stylesheets/palette.cbb835fc.min.css b/docs/assets/stylesheets/palette.cbb835fc.min.css
deleted file mode 100644
index 30f9264c..00000000
--- a/docs/assets/stylesheets/palette.cbb835fc.min.css
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deleted file mode 100644
index 96e380c8..00000000
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diff --git a/docs/search/search_index.json b/docs/search/search_index.json
index 5126890c..c2cbee7d 100644
--- a/docs/search/search_index.json
+++ b/docs/search/search_index.json
@@ -1 +1 @@
-{"config":{"indexing":"full","lang":["en"],"min_search_length":3,"prebuild_index":false,"separator":"[\\s\\-]+"},"docs":[{"location":"","text":"LinkML Schema Metamodel The metamodel for schemas defined using the Linked Data Modeling Language framework. For more information on LinkML: linkml.io main website specification LinkML is self-describing. Every LinkML schema consists of elements that instantiate classes in this metamodel. Core metaclasses: SchemaDefinition ClassDefinition SlotDefinition TypeDefinition There are many subsets of profiles of the metamodel, for different purposes: MinimalSubset BasicSubset BasicSubset For canonical reference documentation on any metamodel construct, refer to the official URI for each construct, e.g. https://w3id.org/linkml/is_a URI: https://w3id.org/linkml/meta Name: meta Classes Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class CommonMetadata Generic metadata shared across definitions Element a named element in the model TypeExpression AnonymousTypeExpression Definition abstract base class for core metaclasses EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... StructuredAlias object that contains meta data about a synonym or alias including where it ca... Expression general mixin for any class that can represent some form of expression AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousClassExpression ClassLevelRule A rule that is applied to classes ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import Setting assignment of a key to a value LocalName an attributed label Example usage example and description AltDescription an attributed description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Annotatable mixin for classes that support annotations Annotation a tag/value pair with the semantics of OWL Annotation Extension a tag/value pair used to add non-model information to an entry Extensible mixin for classes that support extension Slots Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix title the official title of the element classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema description a description of the element's purpose and use enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container types An index to the collection of all type definitions in the schema alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class settings A collection of global variable settings text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots license license for the schema tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... any_of holds if at least one of the expressions hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element definition_uri the \"native\" URI of the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... structured_aliases A list of structured_alias objects aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external consumption in_subset used to indicate membership of a term in a defined subset of terms used for a... from_schema id of the schema that defined the element imported_from the imports entry that this element was derived from see_also a reference owned_by agent that owns or is the steward of the element created_by agent that created the element created_on time at which the element was created last_updated_on time at which the element was last updated modified_by agent that modified the element status status of the element literal_form The literal lexical form of a structured alias alias_predicate The relationship between an element and its alias in_language source A related resource from which the element is derived publisher An entity responsible for making the resource available abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... apply_to Used to extend class or slot definitions values_from The identifier of a \"value set\" -- a set of identifiers that form the possibl... code_set the identifier of an enumeration code set code_set_version the version identifier of the enumeration code set code_set_tag the version tag of the enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query emit_prefixes a list of Curie prefixes that are used in the representation of instances of ... version particular version of schema structured_imports other schemas that are included in this schema default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version Version of the metamodel used to load the schema source_file name, uri or description of the source of the schema source_file_date modification date of the source of the schema source_file_size size in bytes of the source of the schema generation_date date and time that the schema was loaded/generated enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges boolean_slot A grouping of slots that expression a boolean operator over a list of operand... bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... deactivated a deactivated rule is not executed by the rules engine rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression subclass_of rdfs:subClassOf to be emitted in OWL generation defining_slots The combination of is a plus defining slots form a genus-differentia definiti... union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key slot_names_unique if true then induced/mangled slot names are not created for class_usage and a... domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses readonly If present, slot is read only ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... value_specification_constant Grouping for metamodel slots that constrain the a slot value to equal a speci... list_value_specification_constant Grouping for metamodel slots that constrain members of a multivalued slot val... value_presence if true then a value must be present (for lists there must be at least one va... equals_string the slot must have range string and the value of the slot must equal the spec... equals_number the slot must have range of a number and the value of the slot must equal the... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... singular_name a name that is used in the singular form inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... owner the \"owner\" of the slot domain_of the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context is_usage_slot True means that this slot was defined in a slot_usage situation usage_slot_name The name of the slot referenced in the slot_usage subproperty_of Ontology property which this slot is a subproperty of disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... children_are_mutually_disjoint If true then all direct is_a children are mutually disjoint and share no inst... relational_logical_characteristic A property of a slot that pertains to its logical properties symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... is_class_field indicates that for any instance, i, the domain of this slot will include an a... role a textual descriptor that indicates the role played by the slot range minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... interpolated if true then the pattern is first string interpolated partial_match if true then the pattern must match the whole string, as if enclosed in ^ syntax the string value of the slot must conform to this regular expression expresse... structured_pattern the string value of the slot must conform to the regular expression in the pa... string_serialization Used on a slot that stores the string serialization of the containing object alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element setting_key the variable name for a setting setting_value The value assigned for a setting import_from import_as import_map local_name_source the ncname of the source of the name local_name_value a name assigned to an element in a given ontology local_names slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot followed_by in a sequential list, this indicates the next member reversed true if the slot is to be inversed traverse the slot to traverse path_rule a rule for inferring a slot assignment based on evaluating a path through a s... represents_relationship true if this class represents a relationship rather than an entity relational_role the role a slot on a relationship class plays, for example, the subject, obje... unit an encoding of a unit ucum_code associates a QUDT unit with its UCUM code (case-sensitive) derivation Expression for deriving this unit from other units has_quantity_kind Concept in a vocabulary or ontology that denotes the kind of quanity being me... iec61360code symbol name of the unit encoded as a symbol mappings A list of terms from different schemas or terminology systems that have compa... exact_mappings A list of terms from different schemas or terminology systems that have ident... close_mappings A list of terms from different schemas or terminology systems that have close... related_mappings A list of terms from different schemas or terminology systems that have relat... narrow_mappings A list of terms from different schemas or terminology systems that have narro... broad_mappings A list of terms from different schemas or terminology systems that have broad... deprecated_element_has_exact_replacement When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement When an element is deprecated, it can be potentially replaced by this uri or ... annotations a collection of tag/text tuples with the semantics of OWL Annotation extensions a tag/text tuple attached to an arbitrary element extension_tag a tag associated with an extension extension_value the actual annotation Enumerations Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ... RelationalRoleEnum enumeration of roles a slot on a relationship class can play AliasPredicateEnum PresenceEnum enumeration of conditions by which a slot value should be set Types Type Description String A character string Integer An integer Boolean A binary (true or false) value Float A real number that conforms to the xsd:float specification Double A real number that conforms to the xsd:double specification Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Time A time object represents a (local) time of day, independent of any particular... Date a date (year, month and day) in an idealized calendar Datetime The combination of a date and time DateOrDatetime Either a date or a datetime Uriorcurie a URI or a CURIE Uri a complete URI Ncname Prefix part of CURIE Objectidentifier A URI or CURIE that represents an object in the model Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Subsets Subset Description BasicSubset An extension of MinimalSubset that avoids advanced constructs and can be impl... MinimalSubset The absolute minimal set of elements necessary for defining any schema ObjectOrientedProfile A profile that includes all the metamodel elements whose semantics can be exp... OwlProfile A profile that includes all the metamodel elements whose semantics can be exp... RelationalModelProfile A profile that includes all the metamodel elements whose semantics can be exp... SpecificationSubset A subset that includes all the metamodel elements that form part of the norma...","title":"Metamodel Index"},{"location":"#linkml-schema-metamodel","text":"The metamodel for schemas defined using the Linked Data Modeling Language framework. For more information on LinkML: linkml.io main website specification LinkML is self-describing. Every LinkML schema consists of elements that instantiate classes in this metamodel. Core metaclasses: SchemaDefinition ClassDefinition SlotDefinition TypeDefinition There are many subsets of profiles of the metamodel, for different purposes: MinimalSubset BasicSubset BasicSubset For canonical reference documentation on any metamodel construct, refer to the official URI for each construct, e.g. https://w3id.org/linkml/is_a URI: https://w3id.org/linkml/meta Name: meta","title":"LinkML Schema Metamodel"},{"location":"#classes","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class CommonMetadata Generic metadata shared across definitions Element a named element in the model TypeExpression AnonymousTypeExpression Definition abstract base class for core metaclasses EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... StructuredAlias object that contains meta data about a synonym or alias including where it ca... Expression general mixin for any class that can represent some form of expression AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousClassExpression ClassLevelRule A rule that is applied to classes ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import Setting assignment of a key to a value LocalName an attributed label Example usage example and description AltDescription an attributed description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Annotatable mixin for classes that support annotations Annotation a tag/value pair with the semantics of OWL Annotation Extension a tag/value pair used to add non-model information to an entry Extensible mixin for classes that support extension","title":"Classes"},{"location":"#slots","text":"Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix title the official title of the element classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema description a description of the element's purpose and use enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container types An index to the collection of all type definitions in the schema alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class settings A collection of global variable settings text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots license license for the schema tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... any_of holds if at least one of the expressions hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element definition_uri the \"native\" URI of the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... structured_aliases A list of structured_alias objects aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external consumption in_subset used to indicate membership of a term in a defined subset of terms used for a... from_schema id of the schema that defined the element imported_from the imports entry that this element was derived from see_also a reference owned_by agent that owns or is the steward of the element created_by agent that created the element created_on time at which the element was created last_updated_on time at which the element was last updated modified_by agent that modified the element status status of the element literal_form The literal lexical form of a structured alias alias_predicate The relationship between an element and its alias in_language source A related resource from which the element is derived publisher An entity responsible for making the resource available abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... apply_to Used to extend class or slot definitions values_from The identifier of a \"value set\" -- a set of identifiers that form the possibl... code_set the identifier of an enumeration code set code_set_version the version identifier of the enumeration code set code_set_tag the version tag of the enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query emit_prefixes a list of Curie prefixes that are used in the representation of instances of ... version particular version of schema structured_imports other schemas that are included in this schema default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version Version of the metamodel used to load the schema source_file name, uri or description of the source of the schema source_file_date modification date of the source of the schema source_file_size size in bytes of the source of the schema generation_date date and time that the schema was loaded/generated enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges boolean_slot A grouping of slots that expression a boolean operator over a list of operand... bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... deactivated a deactivated rule is not executed by the rules engine rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression subclass_of rdfs:subClassOf to be emitted in OWL generation defining_slots The combination of is a plus defining slots form a genus-differentia definiti... union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key slot_names_unique if true then induced/mangled slot names are not created for class_usage and a... domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses readonly If present, slot is read only ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... value_specification_constant Grouping for metamodel slots that constrain the a slot value to equal a speci... list_value_specification_constant Grouping for metamodel slots that constrain members of a multivalued slot val... value_presence if true then a value must be present (for lists there must be at least one va... equals_string the slot must have range string and the value of the slot must equal the spec... equals_number the slot must have range of a number and the value of the slot must equal the... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... singular_name a name that is used in the singular form inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... owner the \"owner\" of the slot domain_of the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context is_usage_slot True means that this slot was defined in a slot_usage situation usage_slot_name The name of the slot referenced in the slot_usage subproperty_of Ontology property which this slot is a subproperty of disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... children_are_mutually_disjoint If true then all direct is_a children are mutually disjoint and share no inst... relational_logical_characteristic A property of a slot that pertains to its logical properties symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... is_class_field indicates that for any instance, i, the domain of this slot will include an a... role a textual descriptor that indicates the role played by the slot range minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... interpolated if true then the pattern is first string interpolated partial_match if true then the pattern must match the whole string, as if enclosed in ^ syntax the string value of the slot must conform to this regular expression expresse... structured_pattern the string value of the slot must conform to the regular expression in the pa... string_serialization Used on a slot that stores the string serialization of the containing object alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element setting_key the variable name for a setting setting_value The value assigned for a setting import_from import_as import_map local_name_source the ncname of the source of the name local_name_value a name assigned to an element in a given ontology local_names slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot followed_by in a sequential list, this indicates the next member reversed true if the slot is to be inversed traverse the slot to traverse path_rule a rule for inferring a slot assignment based on evaluating a path through a s... represents_relationship true if this class represents a relationship rather than an entity relational_role the role a slot on a relationship class plays, for example, the subject, obje... unit an encoding of a unit ucum_code associates a QUDT unit with its UCUM code (case-sensitive) derivation Expression for deriving this unit from other units has_quantity_kind Concept in a vocabulary or ontology that denotes the kind of quanity being me... iec61360code symbol name of the unit encoded as a symbol mappings A list of terms from different schemas or terminology systems that have compa... exact_mappings A list of terms from different schemas or terminology systems that have ident... close_mappings A list of terms from different schemas or terminology systems that have close... related_mappings A list of terms from different schemas or terminology systems that have relat... narrow_mappings A list of terms from different schemas or terminology systems that have narro... broad_mappings A list of terms from different schemas or terminology systems that have broad... deprecated_element_has_exact_replacement When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement When an element is deprecated, it can be potentially replaced by this uri or ... annotations a collection of tag/text tuples with the semantics of OWL Annotation extensions a tag/text tuple attached to an arbitrary element extension_tag a tag associated with an extension extension_value the actual annotation","title":"Slots"},{"location":"#enumerations","text":"Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ... RelationalRoleEnum enumeration of roles a slot on a relationship class can play AliasPredicateEnum PresenceEnum enumeration of conditions by which a slot value should be set","title":"Enumerations"},{"location":"#types","text":"Type Description String A character string Integer An integer Boolean A binary (true or false) value Float A real number that conforms to the xsd:float specification Double A real number that conforms to the xsd:double specification Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Time A time object represents a (local) time of day, independent of any particular... Date a date (year, month and day) in an idealized calendar Datetime The combination of a date and time DateOrDatetime Either a date or a datetime Uriorcurie a URI or a CURIE Uri a complete URI Ncname Prefix part of CURIE Objectidentifier A URI or CURIE that represents an object in the model Nodeidentifier A URI, CURIE or BNODE that represents a node in a model","title":"Types"},{"location":"#subsets","text":"Subset Description BasicSubset An extension of MinimalSubset that avoids advanced constructs and can be impl... MinimalSubset The absolute minimal set of elements necessary for defining any schema ObjectOrientedProfile A profile that includes all the metamodel elements whose semantics can be exp... OwlProfile A profile that includes all the metamodel elements whose semantics can be exp... RelationalModelProfile A profile that includes all the metamodel elements whose semantics can be exp... SpecificationSubset A subset that includes all the metamodel elements that form part of the norma...","title":"Subsets"},{"location":"AliasPredicateEnum/","text":"Enum: AliasPredicateEnum URI: AliasPredicateEnum Permissible Values Value Meaning Description EXACT_SYNONYM skos:exactMatch RELATED_SYNONYM skos:relatedMatch BROAD_SYNONYM skos:broaderMatch NARROW_SYNONYM skos:narrowerMatch Slots Name Description alias_predicate The relationship between an element and its alias Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: alias_predicate_enum from_schema: https://w3id.org/linkml/meta rank: 5 permissible_values: EXACT_SYNONYM: text: EXACT_SYNONYM meaning: skos:exactMatch RELATED_SYNONYM: text: RELATED_SYNONYM meaning: skos:relatedMatch BROAD_SYNONYM: text: BROAD_SYNONYM meaning: skos:broaderMatch NARROW_SYNONYM: text: NARROW_SYNONYM meaning: skos:narrowerMatch","title":"Enum: AliasPredicateEnum"},{"location":"AliasPredicateEnum/#enum-aliaspredicateenum","text":"URI: AliasPredicateEnum","title":"Enum: AliasPredicateEnum"},{"location":"AliasPredicateEnum/#permissible-values","text":"Value Meaning Description EXACT_SYNONYM skos:exactMatch RELATED_SYNONYM skos:relatedMatch BROAD_SYNONYM skos:broaderMatch NARROW_SYNONYM skos:narrowerMatch","title":"Permissible Values"},{"location":"AliasPredicateEnum/#slots","text":"Name Description alias_predicate The relationship between an element and its alias","title":"Slots"},{"location":"AliasPredicateEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AliasPredicateEnum/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AliasPredicateEnum/#linkml-source","text":"name: alias_predicate_enum from_schema: https://w3id.org/linkml/meta rank: 5 permissible_values: EXACT_SYNONYM: text: EXACT_SYNONYM meaning: skos:exactMatch RELATED_SYNONYM: text: RELATED_SYNONYM meaning: skos:relatedMatch BROAD_SYNONYM: text: BROAD_SYNONYM meaning: skos:broaderMatch NARROW_SYNONYM: text: NARROW_SYNONYM meaning: skos:narrowerMatch","title":"LinkML Source"},{"location":"AltDescription/","text":"Class: AltDescription an attributed description URI: linkml:AltDescription classDiagram class AltDescription AltDescription : alt_description_source AltDescription : alt_description_text Slots Name Cardinality and Range Description Inheritance alt_description_source 0..1 String the source of an attributed description direct alt_description_text 1..1 String text of an attributed description direct Usages used by used in type used CommonMetadata alt_descriptions range AltDescription Element alt_descriptions range AltDescription SchemaDefinition alt_descriptions range AltDescription TypeDefinition alt_descriptions range AltDescription SubsetDefinition alt_descriptions range AltDescription Definition alt_descriptions range AltDescription EnumDefinition alt_descriptions range AltDescription StructuredAlias alt_descriptions range AltDescription AnonymousExpression alt_descriptions range AltDescription PathExpression alt_descriptions range AltDescription AnonymousSlotExpression alt_descriptions range AltDescription SlotDefinition alt_descriptions range AltDescription AnonymousClassExpression alt_descriptions range AltDescription ClassDefinition alt_descriptions range AltDescription ClassRule alt_descriptions range AltDescription PatternExpression alt_descriptions range AltDescription ImportExpression alt_descriptions range AltDescription AltDescription alt_description_source domain AltDescription AltDescription alt_description_text domain AltDescription PermissibleValue alt_descriptions range AltDescription UniqueKey alt_descriptions range AltDescription Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AltDescription native linkml:AltDescription LinkML Source Direct name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - alt_description_source - alt_description_text Induced name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: alt_description_source: name: alt_description_source description: the source of an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: alt_description key: true alias: source owner: alt_description domain_of: - alt_description range: string alt_description_text: name: alt_description_text description: text of an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: alt_description alias: description owner: alt_description domain_of: - alt_description range: string required: true","title":"Class: AltDescription"},{"location":"AltDescription/#class-altdescription","text":"an attributed description URI: linkml:AltDescription classDiagram class AltDescription AltDescription : alt_description_source AltDescription : alt_description_text","title":"Class: AltDescription"},{"location":"AltDescription/#slots","text":"Name Cardinality and Range Description Inheritance alt_description_source 0..1 String the source of an attributed description direct alt_description_text 1..1 String text of an attributed description direct","title":"Slots"},{"location":"AltDescription/#usages","text":"used by used in type used CommonMetadata alt_descriptions range AltDescription Element alt_descriptions range AltDescription SchemaDefinition alt_descriptions range AltDescription TypeDefinition alt_descriptions range AltDescription SubsetDefinition alt_descriptions range AltDescription Definition alt_descriptions range AltDescription EnumDefinition alt_descriptions range AltDescription StructuredAlias alt_descriptions range AltDescription AnonymousExpression alt_descriptions range AltDescription PathExpression alt_descriptions range AltDescription AnonymousSlotExpression alt_descriptions range AltDescription SlotDefinition alt_descriptions range AltDescription AnonymousClassExpression alt_descriptions range AltDescription ClassDefinition alt_descriptions range AltDescription ClassRule alt_descriptions range AltDescription PatternExpression alt_descriptions range AltDescription ImportExpression alt_descriptions range AltDescription AltDescription alt_description_source domain AltDescription AltDescription alt_description_text domain AltDescription PermissibleValue alt_descriptions range AltDescription UniqueKey alt_descriptions range AltDescription","title":"Usages"},{"location":"AltDescription/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AltDescription/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AltDescription/#mappings","text":"Mapping Type Mapped Value self linkml:AltDescription native linkml:AltDescription","title":"Mappings"},{"location":"AltDescription/#linkml-source","text":"","title":"LinkML Source"},{"location":"AltDescription/#direct","text":"name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - alt_description_source - alt_description_text","title":"Direct"},{"location":"AltDescription/#induced","text":"name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: alt_description_source: name: alt_description_source description: the source of an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: alt_description key: true alias: source owner: alt_description domain_of: - alt_description range: string alt_description_text: name: alt_description_text description: text of an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: alt_description alias: description owner: alt_description domain_of: - alt_description range: string required: true","title":"Induced"},{"location":"Annotatable/","text":"Class: Annotatable mixin for classes that support annotations URI: linkml:Annotatable classDiagram class Annotatable Annotatable <|-- Element Annotatable <|-- StructuredAlias Annotatable <|-- AnonymousExpression Annotatable <|-- PathExpression Annotatable <|-- ClassRule Annotatable <|-- PatternExpression Annotatable <|-- ImportExpression Annotatable <|-- PermissibleValue Annotatable <|-- UniqueKey Annotatable <|-- Annotation Annotatable : annotations Slots Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct Mixin Usage mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Annotation a tag/value pair with the semantics of OWL Annotation Usages used by used in type used Element annotations domain Annotatable SchemaDefinition annotations domain Annotatable TypeDefinition annotations domain Annotatable SubsetDefinition annotations domain Annotatable Definition annotations domain Annotatable EnumDefinition annotations domain Annotatable StructuredAlias annotations domain Annotatable AnonymousExpression annotations domain Annotatable PathExpression annotations domain Annotatable AnonymousSlotExpression annotations domain Annotatable SlotDefinition annotations domain Annotatable AnonymousClassExpression annotations domain Annotatable ClassDefinition annotations domain Annotatable ClassRule annotations domain Annotatable PatternExpression annotations domain Annotatable ImportExpression annotations domain Annotatable PermissibleValue annotations domain Annotatable UniqueKey annotations domain Annotatable Annotatable annotations domain Annotatable Annotation annotations domain Annotatable Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/annotations Mappings Mapping Type Mapped Value self linkml:Annotatable native linkml:Annotatable LinkML Source Direct name: annotatable description: mixin for classes that support annotations from_schema: https://w3id.org/linkml/annotations rank: 1000 mixin: true slots: - annotations Induced name: annotatable description: mixin for classes that support annotations from_schema: https://w3id.org/linkml/annotations rank: 1000 mixin: true attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotatable domain_of: - annotatable - annotation range: annotation inlined: true","title":"Class: Annotatable"},{"location":"Annotatable/#class-annotatable","text":"mixin for classes that support annotations URI: linkml:Annotatable classDiagram class Annotatable Annotatable <|-- Element Annotatable <|-- StructuredAlias Annotatable <|-- AnonymousExpression Annotatable <|-- PathExpression Annotatable <|-- ClassRule Annotatable <|-- PatternExpression Annotatable <|-- ImportExpression Annotatable <|-- PermissibleValue Annotatable <|-- UniqueKey Annotatable <|-- Annotation Annotatable : annotations","title":"Class: Annotatable"},{"location":"Annotatable/#slots","text":"Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct","title":"Slots"},{"location":"Annotatable/#mixin-usage","text":"mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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annotations","title":"Direct"},{"location":"Annotatable/#induced","text":"name: annotatable description: mixin for classes that support annotations from_schema: https://w3id.org/linkml/annotations rank: 1000 mixin: true attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotatable domain_of: - annotatable - annotation range: annotation inlined: true","title":"Induced"},{"location":"Annotation/","text":"Class: Annotation a tag/value pair with the semantics of OWL Annotation URI: linkml:Annotation classDiagram class Annotation Annotatable <|-- Annotation Extension <|-- Annotation Annotation : annotations Annotation : extension_tag Annotation : extension_value Annotation : extensions Inheritance Extension Annotation [ Annotatable ] Slots Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct extension_tag 1..1 Uriorcurie a tag associated with an extension Extension extension_value 1..1 NONE the actual annotation Extension extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extension Usages used by used in type used Element annotations range Annotation SchemaDefinition annotations range Annotation TypeDefinition annotations range Annotation SubsetDefinition annotations range Annotation Definition annotations range Annotation EnumDefinition annotations range Annotation StructuredAlias annotations range Annotation AnonymousExpression annotations range Annotation PathExpression annotations range Annotation AnonymousSlotExpression annotations range Annotation SlotDefinition annotations range Annotation AnonymousClassExpression annotations range Annotation ClassDefinition annotations range Annotation ClassRule annotations range Annotation PatternExpression annotations range Annotation ImportExpression annotations range Annotation PermissibleValue annotations range Annotation UniqueKey annotations range Annotation Annotatable annotations range Annotation Annotation annotations range Annotation Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/annotations Mappings Mapping Type Mapped Value self linkml:Annotation native linkml:Annotation LinkML Source Direct name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable slots: - annotations Induced name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotation domain_of: - annotatable - annotation range: annotation inlined: true extension_tag: name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag owner: annotation domain_of: - extension range: uriorcurie required: true extension_value: name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value owner: annotation domain_of: - extension range: string required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: annotation domain_of: - extension - extensible range: extension inlined: true","title":"Class: Annotation"},{"location":"Annotation/#class-annotation","text":"a tag/value pair with the semantics of OWL Annotation URI: linkml:Annotation classDiagram class Annotation Annotatable <|-- Annotation Extension <|-- Annotation Annotation : annotations Annotation : extension_tag Annotation : extension_value Annotation : extensions","title":"Class: Annotation"},{"location":"Annotation/#inheritance","text":"Extension Annotation [ Annotatable ]","title":"Inheritance"},{"location":"Annotation/#slots","text":"Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct extension_tag 1..1 Uriorcurie a tag associated with an extension Extension extension_value 1..1 NONE the actual annotation Extension extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extension","title":"Slots"},{"location":"Annotation/#usages","text":"used by used in type used Element annotations range Annotation SchemaDefinition annotations range Annotation TypeDefinition annotations range Annotation SubsetDefinition annotations range Annotation Definition annotations range Annotation EnumDefinition annotations range Annotation StructuredAlias annotations range Annotation AnonymousExpression annotations range Annotation PathExpression annotations range Annotation AnonymousSlotExpression annotations range Annotation SlotDefinition annotations range Annotation AnonymousClassExpression annotations range Annotation ClassDefinition annotations range Annotation ClassRule annotations range Annotation PatternExpression annotations range Annotation ImportExpression annotations range Annotation PermissibleValue annotations range Annotation UniqueKey annotations range Annotation Annotatable annotations range Annotation Annotation annotations range Annotation","title":"Usages"},{"location":"Annotation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Annotation/#schema-source","text":"from schema: https://w3id.org/linkml/annotations","title":"Schema Source"},{"location":"Annotation/#mappings","text":"Mapping Type Mapped Value self linkml:Annotation native linkml:Annotation","title":"Mappings"},{"location":"Annotation/#linkml-source","text":"","title":"LinkML Source"},{"location":"Annotation/#direct","text":"name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable slots: - annotations","title":"Direct"},{"location":"Annotation/#induced","text":"name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotation domain_of: - annotatable - annotation range: annotation inlined: true extension_tag: name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag owner: annotation domain_of: - extension range: uriorcurie required: true extension_value: name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value owner: annotation domain_of: - extension range: string required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: annotation domain_of: - extension - extensible range: extension inlined: true","title":"Induced"},{"location":"AnonymousClassExpression/","text":"Class: AnonymousClassExpression URI: linkml:AnonymousClassExpression classDiagram class AnonymousClassExpression ClassExpression <|-- AnonymousClassExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousClassExpression : aliases AnonymousClassExpression : all_of AnonymousClassExpression : alt_descriptions AnonymousClassExpression : annotations AnonymousClassExpression : any_of AnonymousClassExpression : broad_mappings AnonymousClassExpression : close_mappings AnonymousClassExpression : comments AnonymousClassExpression : deprecated AnonymousClassExpression : deprecated_element_has_exact_replacement AnonymousClassExpression : deprecated_element_has_possible_replacement AnonymousClassExpression : description AnonymousClassExpression : exact_mappings AnonymousClassExpression : exactly_one_of AnonymousClassExpression : examples AnonymousClassExpression : extensions AnonymousClassExpression : from_schema AnonymousClassExpression : imported_from AnonymousClassExpression : in_language AnonymousClassExpression : in_subset AnonymousClassExpression : is_a AnonymousClassExpression : mappings AnonymousClassExpression : narrow_mappings AnonymousClassExpression : none_of AnonymousClassExpression : notes AnonymousClassExpression : rank AnonymousClassExpression : related_mappings AnonymousClassExpression : see_also AnonymousClassExpression : slot_conditions AnonymousClassExpression : source AnonymousClassExpression : structured_aliases AnonymousClassExpression : title AnonymousClassExpression : todos Inheritance AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousClassExpression [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct exactly_one_of 0..1 Expression holds if only one of the expressions hold ClassExpression in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata any_of 0..1 Expression holds if at least one of the expressions hold ClassExpression broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata all_of 0..1 Expression holds if all of the expressions hold ClassExpression narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata none_of 0..1 Expression holds if none of the expressions hold ClassExpression rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used PathExpression range_expression range AnonymousClassExpression SlotExpression range_expression range AnonymousClassExpression AnonymousSlotExpression range_expression range AnonymousClassExpression SlotDefinition range_expression range AnonymousClassExpression ClassExpression any_of range AnonymousClassExpression ClassExpression exactly_one_of range AnonymousClassExpression ClassExpression none_of range AnonymousClassExpression ClassExpression all_of range AnonymousClassExpression AnonymousClassExpression any_of range AnonymousClassExpression AnonymousClassExpression exactly_one_of range AnonymousClassExpression AnonymousClassExpression none_of range AnonymousClassExpression AnonymousClassExpression all_of range AnonymousClassExpression ClassDefinition classification_rules range AnonymousClassExpression ClassDefinition any_of range AnonymousClassExpression ClassDefinition exactly_one_of range AnonymousClassExpression ClassDefinition none_of range AnonymousClassExpression ClassDefinition all_of range AnonymousClassExpression ClassRule preconditions range AnonymousClassExpression ClassRule postconditions range AnonymousClassExpression ClassRule elseconditions range AnonymousClassExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousClassExpression native linkml:AnonymousClassExpression LinkML Source Direct name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing slots: - is_a Induced name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: anonymous_class_expression domain_of: - definition - anonymous_class_expression range: definition any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: anonymous_class_expression domain_of: - class_expression range: slot_definition inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_class_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_class_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_class_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_class_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_class_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_class_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_class_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_class_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_class_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_class_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_class_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_class_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_class_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_class_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_class_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_class_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_class_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_class_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: AnonymousClassExpression"},{"location":"AnonymousClassExpression/#class-anonymousclassexpression","text":"URI: linkml:AnonymousClassExpression classDiagram class AnonymousClassExpression ClassExpression <|-- AnonymousClassExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousClassExpression : aliases AnonymousClassExpression : all_of AnonymousClassExpression : alt_descriptions AnonymousClassExpression : annotations AnonymousClassExpression : any_of AnonymousClassExpression : broad_mappings AnonymousClassExpression : close_mappings AnonymousClassExpression : comments AnonymousClassExpression : deprecated AnonymousClassExpression : deprecated_element_has_exact_replacement AnonymousClassExpression : deprecated_element_has_possible_replacement AnonymousClassExpression : description AnonymousClassExpression : exact_mappings AnonymousClassExpression : exactly_one_of AnonymousClassExpression : examples AnonymousClassExpression : extensions AnonymousClassExpression : from_schema AnonymousClassExpression : imported_from AnonymousClassExpression : in_language AnonymousClassExpression : in_subset AnonymousClassExpression : is_a AnonymousClassExpression : mappings AnonymousClassExpression : narrow_mappings AnonymousClassExpression : none_of AnonymousClassExpression : notes AnonymousClassExpression : rank AnonymousClassExpression : related_mappings AnonymousClassExpression : see_also AnonymousClassExpression : slot_conditions AnonymousClassExpression : source AnonymousClassExpression : structured_aliases AnonymousClassExpression : title AnonymousClassExpression : todos","title":"Class: AnonymousClassExpression"},{"location":"AnonymousClassExpression/#inheritance","text":"AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousClassExpression [ ClassExpression ]","title":"Inheritance"},{"location":"AnonymousClassExpression/#slots","text":"Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct exactly_one_of 0..1 Expression holds if only one of the expressions hold ClassExpression in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata any_of 0..1 Expression holds if at least one of the expressions hold ClassExpression broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata all_of 0..1 Expression holds if all of the expressions hold ClassExpression narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata none_of 0..1 Expression holds if none of the expressions hold ClassExpression rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"AnonymousClassExpression/#usages","text":"used by used in type used PathExpression range_expression range AnonymousClassExpression SlotExpression range_expression range AnonymousClassExpression AnonymousSlotExpression range_expression range AnonymousClassExpression SlotDefinition range_expression range AnonymousClassExpression ClassExpression any_of range AnonymousClassExpression ClassExpression exactly_one_of range AnonymousClassExpression ClassExpression none_of range AnonymousClassExpression ClassExpression all_of range AnonymousClassExpression AnonymousClassExpression any_of range AnonymousClassExpression AnonymousClassExpression exactly_one_of range AnonymousClassExpression AnonymousClassExpression none_of range AnonymousClassExpression AnonymousClassExpression all_of range AnonymousClassExpression ClassDefinition classification_rules range AnonymousClassExpression ClassDefinition any_of range AnonymousClassExpression ClassDefinition exactly_one_of range AnonymousClassExpression ClassDefinition none_of range AnonymousClassExpression ClassDefinition all_of range AnonymousClassExpression ClassRule preconditions range AnonymousClassExpression ClassRule postconditions range AnonymousClassExpression ClassRule elseconditions range AnonymousClassExpression","title":"Usages"},{"location":"AnonymousClassExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousClassExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousClassExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousClassExpression native linkml:AnonymousClassExpression","title":"Mappings"},{"location":"AnonymousClassExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousClassExpression/#direct","text":"name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing slots: - is_a","title":"Direct"},{"location":"AnonymousClassExpression/#induced","text":"name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: anonymous_class_expression domain_of: - definition - anonymous_class_expression range: definition any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: anonymous_class_expression domain_of: - class_expression range: slot_definition inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_class_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_class_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_class_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_class_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_class_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_class_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_class_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_class_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_class_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_class_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_class_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_class_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_class_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_class_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_class_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_class_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_class_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_class_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"AnonymousEnumExpression/","text":"Class: AnonymousEnumExpression An enum_expression that is not named URI: linkml:AnonymousEnumExpression classDiagram class AnonymousEnumExpression EnumExpression <|-- AnonymousEnumExpression AnonymousEnumExpression : code_set AnonymousEnumExpression : code_set_tag AnonymousEnumExpression : code_set_version AnonymousEnumExpression : concepts AnonymousEnumExpression : include AnonymousEnumExpression : inherits AnonymousEnumExpression : matches AnonymousEnumExpression : minus AnonymousEnumExpression : permissible_values AnonymousEnumExpression : pv_formula AnonymousEnumExpression : reachable_from Inheritance AnonymousEnumExpression [ EnumExpression ] Slots Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression Usages used by used in type used EnumExpression include range AnonymousEnumExpression EnumExpression minus range AnonymousEnumExpression AnonymousEnumExpression include range AnonymousEnumExpression AnonymousEnumExpression minus range AnonymousEnumExpression EnumDefinition include range AnonymousEnumExpression EnumDefinition minus range AnonymousEnumExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousEnumExpression native linkml:AnonymousEnumExpression LinkML Source Direct name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression Induced name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: anonymous_enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: anonymous_enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: anonymous_enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: anonymous_enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: anonymous_enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: anonymous_enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: anonymous_enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie","title":"Class: AnonymousEnumExpression"},{"location":"AnonymousEnumExpression/#class-anonymousenumexpression","text":"An enum_expression that is not named URI: linkml:AnonymousEnumExpression classDiagram class AnonymousEnumExpression EnumExpression <|-- AnonymousEnumExpression AnonymousEnumExpression : code_set AnonymousEnumExpression : code_set_tag AnonymousEnumExpression : code_set_version AnonymousEnumExpression : concepts AnonymousEnumExpression : include AnonymousEnumExpression : inherits AnonymousEnumExpression : matches AnonymousEnumExpression : minus AnonymousEnumExpression : permissible_values AnonymousEnumExpression : pv_formula AnonymousEnumExpression : reachable_from","title":"Class: AnonymousEnumExpression"},{"location":"AnonymousEnumExpression/#inheritance","text":"AnonymousEnumExpression [ EnumExpression ]","title":"Inheritance"},{"location":"AnonymousEnumExpression/#slots","text":"Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression","title":"Slots"},{"location":"AnonymousEnumExpression/#usages","text":"used by used in type used EnumExpression include range AnonymousEnumExpression EnumExpression minus range AnonymousEnumExpression AnonymousEnumExpression include range AnonymousEnumExpression AnonymousEnumExpression minus range AnonymousEnumExpression EnumDefinition include range AnonymousEnumExpression EnumDefinition minus range AnonymousEnumExpression","title":"Usages"},{"location":"AnonymousEnumExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousEnumExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousEnumExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousEnumExpression native linkml:AnonymousEnumExpression","title":"Mappings"},{"location":"AnonymousEnumExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousEnumExpression/#direct","text":"name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression","title":"Direct"},{"location":"AnonymousEnumExpression/#induced","text":"name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: anonymous_enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: anonymous_enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: anonymous_enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: anonymous_enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: anonymous_enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: anonymous_enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: anonymous_enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie","title":"Induced"},{"location":"AnonymousExpression/","text":"Class: AnonymousExpression NOTE : this is an abstract class and should not be instantiated directly URI: linkml:AnonymousExpression classDiagram class AnonymousExpression Expression <|-- AnonymousExpression Extensible <|-- AnonymousExpression Annotatable <|-- AnonymousExpression CommonMetadata <|-- AnonymousExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos AnonymousExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos Inheritance AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ] AnonymousClassExpression [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousExpression native linkml:AnonymousExpression LinkML Source Direct name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing Induced name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing attributes: extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: AnonymousExpression"},{"location":"AnonymousExpression/#class-anonymousexpression","text":"NOTE : this is an abstract class and should not be instantiated directly URI: linkml:AnonymousExpression classDiagram class AnonymousExpression Expression <|-- AnonymousExpression Extensible <|-- AnonymousExpression Annotatable <|-- AnonymousExpression CommonMetadata <|-- AnonymousExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos AnonymousExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos","title":"Class: AnonymousExpression"},{"location":"AnonymousExpression/#inheritance","text":"AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ] AnonymousClassExpression [ ClassExpression ]","title":"Inheritance"},{"location":"AnonymousExpression/#slots","text":"Name Cardinality and Range Description Inheritance broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"AnonymousExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousExpression native linkml:AnonymousExpression","title":"Mappings"},{"location":"AnonymousExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousExpression/#direct","text":"name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing","title":"Direct"},{"location":"AnonymousExpression/#induced","text":"name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing attributes: extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"AnonymousSlotExpression/","text":"Class: AnonymousSlotExpression URI: linkml:AnonymousSlotExpression classDiagram class AnonymousSlotExpression SlotExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousSlotExpression AnonymousSlotExpression : aliases AnonymousSlotExpression : all_members AnonymousSlotExpression : all_of AnonymousSlotExpression : alt_descriptions AnonymousSlotExpression : annotations AnonymousSlotExpression : any_of AnonymousSlotExpression : broad_mappings AnonymousSlotExpression : close_mappings AnonymousSlotExpression : comments AnonymousSlotExpression : deprecated AnonymousSlotExpression : deprecated_element_has_exact_replacement AnonymousSlotExpression : deprecated_element_has_possible_replacement AnonymousSlotExpression : description AnonymousSlotExpression : enum_range AnonymousSlotExpression : equals_expression AnonymousSlotExpression : equals_number AnonymousSlotExpression : equals_string AnonymousSlotExpression : equals_string_in AnonymousSlotExpression : exact_mappings AnonymousSlotExpression : exactly_one_of AnonymousSlotExpression : examples AnonymousSlotExpression : extensions AnonymousSlotExpression : from_schema AnonymousSlotExpression : has_member AnonymousSlotExpression : implicit_prefix AnonymousSlotExpression : imported_from AnonymousSlotExpression : in_language AnonymousSlotExpression : in_subset AnonymousSlotExpression : inlined AnonymousSlotExpression : inlined_as_list AnonymousSlotExpression : mappings AnonymousSlotExpression : maximum_cardinality AnonymousSlotExpression : maximum_value AnonymousSlotExpression : minimum_cardinality AnonymousSlotExpression : minimum_value AnonymousSlotExpression : narrow_mappings AnonymousSlotExpression : none_of AnonymousSlotExpression : notes AnonymousSlotExpression : pattern AnonymousSlotExpression : range AnonymousSlotExpression : range_expression AnonymousSlotExpression : rank AnonymousSlotExpression : recommended AnonymousSlotExpression : related_mappings AnonymousSlotExpression : required AnonymousSlotExpression : see_also AnonymousSlotExpression : source AnonymousSlotExpression : structured_aliases AnonymousSlotExpression : structured_pattern AnonymousSlotExpression : title AnonymousSlotExpression : todos AnonymousSlotExpression : unit AnonymousSlotExpression : value_presence Inheritance AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ] Slots Name Cardinality and Range Description Inheritance exactly_one_of 0..1 Expression holds if only one of the expressions hold SlotExpression in_language 0..1 String CommonMetadata minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression see_also 0..* Uriorcurie a reference CommonMetadata pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata any_of 0..1 Expression holds if at least one of the expressions hold SlotExpression broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression all_of 0..1 Expression holds if all of the expressions hold SlotExpression narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression none_of 0..1 Expression holds if none of the expressions hold SlotExpression unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata range 0..1 Element defines the type of the object of the slot SlotExpression Usages used by used in type used SlotExpression has_member range AnonymousSlotExpression SlotExpression all_members range AnonymousSlotExpression SlotExpression none_of range AnonymousSlotExpression SlotExpression exactly_one_of range AnonymousSlotExpression SlotExpression any_of range AnonymousSlotExpression SlotExpression all_of range AnonymousSlotExpression AnonymousSlotExpression has_member range AnonymousSlotExpression AnonymousSlotExpression all_members range AnonymousSlotExpression AnonymousSlotExpression none_of range AnonymousSlotExpression AnonymousSlotExpression exactly_one_of range AnonymousSlotExpression AnonymousSlotExpression any_of range AnonymousSlotExpression AnonymousSlotExpression all_of range AnonymousSlotExpression SlotDefinition has_member range AnonymousSlotExpression SlotDefinition all_members range AnonymousSlotExpression SlotDefinition none_of range AnonymousSlotExpression SlotDefinition exactly_one_of range AnonymousSlotExpression SlotDefinition any_of range AnonymousSlotExpression SlotDefinition all_of range AnonymousSlotExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousSlotExpression native linkml:AnonymousSlotExpression LinkML Source Direct name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing Induced name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: anonymous_slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: anonymous_slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: anonymous_slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: anonymous_slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: anonymous_slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: anonymous_slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: anonymous_slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_slot_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_slot_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_slot_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_slot_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_slot_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_slot_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_slot_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_slot_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_slot_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_slot_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_slot_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_slot_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_slot_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_slot_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_slot_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_slot_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_slot_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_slot_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: AnonymousSlotExpression"},{"location":"AnonymousSlotExpression/#class-anonymousslotexpression","text":"URI: linkml:AnonymousSlotExpression classDiagram class AnonymousSlotExpression SlotExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousSlotExpression AnonymousSlotExpression : aliases AnonymousSlotExpression : all_members AnonymousSlotExpression : all_of AnonymousSlotExpression : alt_descriptions AnonymousSlotExpression : annotations AnonymousSlotExpression : any_of AnonymousSlotExpression : broad_mappings AnonymousSlotExpression : close_mappings AnonymousSlotExpression : comments AnonymousSlotExpression : deprecated AnonymousSlotExpression : deprecated_element_has_exact_replacement AnonymousSlotExpression : deprecated_element_has_possible_replacement AnonymousSlotExpression : description AnonymousSlotExpression : enum_range AnonymousSlotExpression : equals_expression AnonymousSlotExpression : equals_number AnonymousSlotExpression : equals_string AnonymousSlotExpression : equals_string_in AnonymousSlotExpression : exact_mappings AnonymousSlotExpression : exactly_one_of AnonymousSlotExpression : examples AnonymousSlotExpression : extensions AnonymousSlotExpression : from_schema AnonymousSlotExpression : has_member AnonymousSlotExpression : implicit_prefix AnonymousSlotExpression : imported_from AnonymousSlotExpression : in_language AnonymousSlotExpression : in_subset AnonymousSlotExpression : inlined AnonymousSlotExpression : inlined_as_list AnonymousSlotExpression : mappings AnonymousSlotExpression : maximum_cardinality AnonymousSlotExpression : maximum_value AnonymousSlotExpression : minimum_cardinality AnonymousSlotExpression : minimum_value AnonymousSlotExpression : narrow_mappings AnonymousSlotExpression : none_of AnonymousSlotExpression : notes AnonymousSlotExpression : pattern AnonymousSlotExpression : range AnonymousSlotExpression : range_expression AnonymousSlotExpression : rank AnonymousSlotExpression : recommended AnonymousSlotExpression : related_mappings AnonymousSlotExpression : required AnonymousSlotExpression : see_also AnonymousSlotExpression : source AnonymousSlotExpression : structured_aliases AnonymousSlotExpression : structured_pattern AnonymousSlotExpression : title AnonymousSlotExpression : todos AnonymousSlotExpression : unit AnonymousSlotExpression : value_presence","title":"Class: AnonymousSlotExpression"},{"location":"AnonymousSlotExpression/#inheritance","text":"AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ]","title":"Inheritance"},{"location":"AnonymousSlotExpression/#slots","text":"Name Cardinality and Range Description Inheritance exactly_one_of 0..1 Expression holds if only one of the expressions hold SlotExpression in_language 0..1 String CommonMetadata minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression see_also 0..* Uriorcurie a reference CommonMetadata pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata any_of 0..1 Expression holds if at least one of the expressions hold SlotExpression broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression all_of 0..1 Expression holds if all of the expressions hold SlotExpression narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression none_of 0..1 Expression holds if none of the expressions hold SlotExpression unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata range 0..1 Element defines the type of the object of the slot SlotExpression","title":"Slots"},{"location":"AnonymousSlotExpression/#usages","text":"used by used in type used SlotExpression has_member range AnonymousSlotExpression SlotExpression all_members range AnonymousSlotExpression SlotExpression none_of range AnonymousSlotExpression SlotExpression exactly_one_of range AnonymousSlotExpression SlotExpression any_of range AnonymousSlotExpression SlotExpression all_of range AnonymousSlotExpression AnonymousSlotExpression has_member range AnonymousSlotExpression AnonymousSlotExpression all_members range AnonymousSlotExpression AnonymousSlotExpression none_of range AnonymousSlotExpression AnonymousSlotExpression exactly_one_of range AnonymousSlotExpression AnonymousSlotExpression any_of range AnonymousSlotExpression AnonymousSlotExpression all_of range AnonymousSlotExpression SlotDefinition has_member range AnonymousSlotExpression SlotDefinition all_members range AnonymousSlotExpression SlotDefinition none_of range AnonymousSlotExpression SlotDefinition exactly_one_of range AnonymousSlotExpression SlotDefinition any_of range AnonymousSlotExpression SlotDefinition all_of range AnonymousSlotExpression","title":"Usages"},{"location":"AnonymousSlotExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousSlotExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousSlotExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousSlotExpression native linkml:AnonymousSlotExpression","title":"Mappings"},{"location":"AnonymousSlotExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousSlotExpression/#direct","text":"name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing","title":"Direct"},{"location":"AnonymousSlotExpression/#induced","text":"name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: anonymous_slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: anonymous_slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: anonymous_slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: anonymous_slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: anonymous_slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: anonymous_slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: anonymous_slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_slot_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_slot_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_slot_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_slot_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_slot_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_slot_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_slot_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_slot_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_slot_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_slot_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_slot_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_slot_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_slot_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_slot_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_slot_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_slot_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_slot_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_slot_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"AnonymousTypeExpression/","text":"Class: AnonymousTypeExpression URI: linkml:AnonymousTypeExpression classDiagram class AnonymousTypeExpression TypeExpression <|-- AnonymousTypeExpression AnonymousTypeExpression : all_of AnonymousTypeExpression : any_of AnonymousTypeExpression : equals_number AnonymousTypeExpression : equals_string AnonymousTypeExpression : equals_string_in AnonymousTypeExpression : exactly_one_of AnonymousTypeExpression : implicit_prefix AnonymousTypeExpression : maximum_value AnonymousTypeExpression : minimum_value AnonymousTypeExpression : none_of AnonymousTypeExpression : pattern AnonymousTypeExpression : structured_pattern AnonymousTypeExpression : unit Inheritance AnonymousTypeExpression [ TypeExpression ] Slots Name Cardinality and Range Description Inheritance any_of 0..1 Expression holds if at least one of the expressions hold TypeExpression exactly_one_of 0..1 Expression holds if only one of the expressions hold TypeExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression none_of 0..1 Expression holds if none of the expressions hold TypeExpression all_of 0..1 Expression holds if all of the expressions hold TypeExpression unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression pattern 0..1 String the string value of the slot must conform to this regular expression expresse... TypeExpression Usages used by used in type used TypeExpression none_of range AnonymousTypeExpression TypeExpression exactly_one_of range AnonymousTypeExpression TypeExpression any_of range AnonymousTypeExpression TypeExpression all_of range AnonymousTypeExpression AnonymousTypeExpression none_of range AnonymousTypeExpression AnonymousTypeExpression exactly_one_of range AnonymousTypeExpression AnonymousTypeExpression any_of range AnonymousTypeExpression AnonymousTypeExpression all_of range AnonymousTypeExpression TypeDefinition none_of range AnonymousTypeExpression TypeDefinition exactly_one_of range AnonymousTypeExpression TypeDefinition any_of range AnonymousTypeExpression TypeDefinition all_of range AnonymousTypeExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousTypeExpression native linkml:AnonymousTypeExpression LinkML Source Direct name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression Induced name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_type_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Class: AnonymousTypeExpression"},{"location":"AnonymousTypeExpression/#class-anonymoustypeexpression","text":"URI: linkml:AnonymousTypeExpression classDiagram class AnonymousTypeExpression TypeExpression <|-- AnonymousTypeExpression AnonymousTypeExpression : all_of AnonymousTypeExpression : any_of AnonymousTypeExpression : equals_number AnonymousTypeExpression : equals_string AnonymousTypeExpression : equals_string_in AnonymousTypeExpression : exactly_one_of AnonymousTypeExpression : implicit_prefix AnonymousTypeExpression : maximum_value AnonymousTypeExpression : minimum_value AnonymousTypeExpression : none_of AnonymousTypeExpression : pattern AnonymousTypeExpression : structured_pattern AnonymousTypeExpression : unit","title":"Class: AnonymousTypeExpression"},{"location":"AnonymousTypeExpression/#inheritance","text":"AnonymousTypeExpression [ TypeExpression ]","title":"Inheritance"},{"location":"AnonymousTypeExpression/#slots","text":"Name Cardinality and Range Description Inheritance any_of 0..1 Expression holds if at least one of the expressions hold TypeExpression exactly_one_of 0..1 Expression holds if only one of the expressions hold TypeExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression none_of 0..1 Expression holds if none of the expressions hold TypeExpression all_of 0..1 Expression holds if all of the expressions hold TypeExpression unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression pattern 0..1 String the string value of the slot must conform to this regular expression expresse... TypeExpression","title":"Slots"},{"location":"AnonymousTypeExpression/#usages","text":"used by used in type used TypeExpression none_of range AnonymousTypeExpression TypeExpression exactly_one_of range AnonymousTypeExpression TypeExpression any_of range AnonymousTypeExpression TypeExpression all_of range AnonymousTypeExpression AnonymousTypeExpression none_of range AnonymousTypeExpression AnonymousTypeExpression exactly_one_of range AnonymousTypeExpression AnonymousTypeExpression any_of range AnonymousTypeExpression AnonymousTypeExpression all_of range AnonymousTypeExpression TypeDefinition none_of range AnonymousTypeExpression TypeDefinition exactly_one_of range AnonymousTypeExpression TypeDefinition any_of range AnonymousTypeExpression TypeDefinition all_of range AnonymousTypeExpression","title":"Usages"},{"location":"AnonymousTypeExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousTypeExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousTypeExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousTypeExpression native linkml:AnonymousTypeExpression","title":"Mappings"},{"location":"AnonymousTypeExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousTypeExpression/#direct","text":"name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression","title":"Direct"},{"location":"AnonymousTypeExpression/#induced","text":"name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_type_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Induced"},{"location":"BasicSubset/","text":"Subset: BasicSubset _An extension of MinimalSubset that avoids advanced constructs and can be implemented by a broad variety of tools. This subset roughly corresponds to the union of most standard constructs used in relational datamodel modeling, object oriented modeling, and simple JSON-style modeling, while avoiding more advanced constructs from these languages. It is often possible to translate from a more expressive schema to a BasicSubset schema, through a schema derivation process_ URI: BasicSubset Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class CommonMetadata Generic metadata shared across definitions Element a named element in the model Definition abstract base class for core metaclasses Example usage example and description AltDescription an attributed description SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema title 0..1 String the official title of the element slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema description 0..1 recommended String a description of the element's purpose and use types 0..* TypeDefinition An index to the collection of all type definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... imports 0..* Uriorcurie other schemas that are included in this schema license 0..1 String license for the schema rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... version 0..1 String particular version of schema default_curi_maps 0..* String ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version 0..1 String Version of the metamodel used to load the schema source_file 0..1 String name, uri or description of the source of the schema source_file_date 0..1 Datetime modification date of the source of the schema source_file_size 0..1 Integer size in bytes of the source of the schema generation_date 0..1 Datetime date and time that the schema was loaded/generated categories 0..* Uriorcurie controlled terms used to categorize an element keywords 0..* String Keywords or tags used to describe the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element ClassDefinition an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 Boolean indicator that this is the root class in tree structures rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_keys 0..* UniqueKey A collection of unique keys for this class abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element SlotDefinition an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application title 0..1 String the official title of the element identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container description 0..1 recommended String a description of the element's purpose and use multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... singular_name 0..1 String a name that is used in the singular form key 0..1 Boolean True means that the key slot(s) uniquely identify the container slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 Boolean true if this slot is a grouping slot range 0..1 Element defines the type of the object of the slot minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element TypeDefinition an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use typeof 0..1 TypeDefinition Names a parent type base 0..1 String python base type that implements this type definition repr 0..1 String the name of the python object that implements this type definition pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element EnumDefinition an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set code_set_tag 0..1 String the version tag of the enumeration code set code_set_version 0..1 String the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element SubsetDefinition an element that can be used to group other metamodel elements Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element Prefix prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) prefix_reference 1..1 Uri A URI associated with a given prefix PermissibleValue a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use text 1..1 String identifier meaning 0..1 Uriorcurie the value meaning of a permissible value rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element UniqueKey a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element CommonMetadata Generic metadata shared across definitions Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element Element a named element in the model Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element Definition abstract base class for core metaclasses Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element Example usage example and description Name Cardinality and Range Description value 0..1 String example value value_description 0..1 String description of what the value is doing AltDescription an attributed description Name Cardinality and Range Description alt_description_source 0..1 String the source of an attributed description alt_description_text 1..1 String text of an attributed description Slots in subset Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix title the official title of the element classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema description a description of the element's purpose and use enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container types An index to the collection of all type definitions in the schema multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots license license for the schema tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external consumption in_subset used to indicate membership of a term in a defined subset of terms used for a... see_also a reference owned_by agent that owns or is the steward of the element created_by agent that created the element created_on time at which the element was created last_updated_on time at which the element was last updated modified_by agent that modified the element status status of the element source A related resource from which the element is derived publisher An entity responsible for making the resource available abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... code_set the identifier of an enumeration code set code_set_version the version identifier of the enumeration code set code_set_tag the version tag of the enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... version particular version of schema default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version Version of the metamodel used to load the schema source_file name, uri or description of the source of the schema source_file_date modification date of the source of the schema source_file_size size in bytes of the source of the schema generation_date date and time that the schema was loaded/generated unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key range defines the type of the object of the slot singular_name a name that is used in the singular form key True means that the key slot(s) uniquely identify the container minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot Enumerations in subset Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"BasicSubset"},{"location":"BasicSubset/#subset-basicsubset","text":"_An extension of MinimalSubset that avoids advanced constructs and can be implemented by a broad variety of tools. This subset roughly corresponds to the union of most standard constructs used in relational datamodel modeling, object oriented modeling, and simple JSON-style modeling, while avoiding more advanced constructs from these languages. It is often possible to translate from a more expressive schema to a BasicSubset schema, through a schema derivation process_ URI: BasicSubset","title":"Subset: BasicSubset"},{"location":"BasicSubset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"BasicSubset/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"BasicSubset/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class CommonMetadata Generic metadata shared across definitions Element a named element in the model Definition abstract base class for core metaclasses Example usage example and description AltDescription an attributed description","title":"Classes in subset"},{"location":"BasicSubset/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema title 0..1 String the official title of the element slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema description 0..1 recommended String a description of the element's purpose and use types 0..* TypeDefinition An index to the collection of all type definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... imports 0..* Uriorcurie other schemas that are included in this schema license 0..1 String license for the schema rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... version 0..1 String particular version of schema default_curi_maps 0..* String ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version 0..1 String Version of the metamodel used to load the schema source_file 0..1 String name, uri or description of the source of the schema source_file_date 0..1 Datetime modification date of the source of the schema source_file_size 0..1 Integer size in bytes of the source of the schema generation_date 0..1 Datetime date and time that the schema was loaded/generated categories 0..* Uriorcurie controlled terms used to categorize an element keywords 0..* String Keywords or tags used to describe the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element","title":"SchemaDefinition"},{"location":"BasicSubset/#classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 Boolean indicator that this is the root class in tree structures rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_keys 0..* UniqueKey A collection of unique keys for this class abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element","title":"ClassDefinition"},{"location":"BasicSubset/#slotdefinition","text":"an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application title 0..1 String the official title of the element identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container description 0..1 recommended String a description of the element's purpose and use multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... singular_name 0..1 String a name that is used in the singular form key 0..1 Boolean True means that the key slot(s) uniquely identify the container slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 Boolean true if this slot is a grouping slot range 0..1 Element defines the type of the object of the slot minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String 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String a description of the element's purpose and use is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set code_set_tag 0..1 String the version tag of the enumeration code set code_set_version 0..1 String the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example 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alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element","title":"SubsetDefinition"},{"location":"BasicSubset/#prefix","text":"prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) prefix_reference 1..1 Uri A URI associated with a given prefix","title":"Prefix"},{"location":"BasicSubset/#permissiblevalue","text":"a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use text 1..1 String identifier meaning 0..1 Uriorcurie the value meaning of a permissible value rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element","title":"PermissibleValue"},{"location":"BasicSubset/#uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used 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alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element","title":"CommonMetadata"},{"location":"BasicSubset/#element","text":"a named element in the model Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended 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Uriorcurie a reference aliases 0..* String Alaternate names for the element","title":"Element"},{"location":"BasicSubset/#definition","text":"abstract base class for core metaclasses Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element","title":"Definition"},{"location":"BasicSubset/#example","text":"usage example and description Name Cardinality and Range Description value 0..1 String example value value_description 0..1 String description of what the value is doing","title":"Example"},{"location":"BasicSubset/#altdescription","text":"an attributed description Name Cardinality and Range Description alt_description_source 0..1 String the source of an attributed description alt_description_text 1..1 String text of an attributed description","title":"AltDescription"},{"location":"BasicSubset/#slots-in-subset","text":"Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix title the official title of the element classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema description a description of the element's purpose and use enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container types An index to the collection of all type definitions in the schema multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots license license for the schema tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external consumption in_subset used to indicate membership of a term in a defined subset of terms used for a... see_also a reference owned_by agent that owns or is the steward of the element created_by agent that created the element created_on time at which the element was created last_updated_on time at which the element was last updated modified_by agent that modified the element status status of the element source A related resource from which the element is derived publisher An entity responsible for making the resource available abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... code_set the identifier of an enumeration code set code_set_version the version identifier of the enumeration code set code_set_tag the version tag of the enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... version particular version of schema default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version Version of the metamodel used to load the schema source_file name, uri or description of the source of the schema source_file_date modification date of the source of the schema source_file_size size in bytes of the source of the schema generation_date date and time that the schema was loaded/generated unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key range defines the type of the object of the slot singular_name a name that is used in the singular form key True means that the key slot(s) uniquely identify the container minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot","title":"Slots in subset"},{"location":"BasicSubset/#enumerations-in-subset","text":"Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"Enumerations in subset"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"ClassDefinition/","text":"Class: ClassDefinition an element whose instances are complex objects that may have slot-value assignments URI: linkml:ClassDefinition classDiagram class ClassDefinition ClassExpression <|-- ClassDefinition Definition <|-- ClassDefinition ClassDefinition : abstract ClassDefinition : aliases ClassDefinition : all_of ClassDefinition : alt_descriptions ClassDefinition : annotations ClassDefinition : any_of ClassDefinition : apply_to ClassDefinition : attributes ClassDefinition : broad_mappings ClassDefinition : children_are_mutually_disjoint ClassDefinition : class_uri ClassDefinition : classification_rules ClassDefinition : close_mappings ClassDefinition : comments ClassDefinition : conforms_to ClassDefinition : created_by ClassDefinition : created_on ClassDefinition : defining_slots ClassDefinition : definition_uri ClassDefinition : deprecated ClassDefinition : deprecated_element_has_exact_replacement ClassDefinition : deprecated_element_has_possible_replacement ClassDefinition : description ClassDefinition : disjoint_with ClassDefinition : exact_mappings ClassDefinition : exactly_one_of ClassDefinition : examples ClassDefinition : extensions ClassDefinition : from_schema ClassDefinition : id_prefixes ClassDefinition : imported_from ClassDefinition : in_language ClassDefinition : in_subset ClassDefinition : is_a ClassDefinition : last_updated_on ClassDefinition : local_names ClassDefinition : mappings ClassDefinition : mixin ClassDefinition : mixins ClassDefinition : modified_by ClassDefinition : name ClassDefinition : narrow_mappings ClassDefinition : none_of ClassDefinition : notes ClassDefinition : rank ClassDefinition : related_mappings ClassDefinition : represents_relationship ClassDefinition : rules ClassDefinition : see_also ClassDefinition : slot_conditions ClassDefinition : slot_names_unique ClassDefinition : slot_usage ClassDefinition : slots ClassDefinition : source ClassDefinition : status ClassDefinition : string_serialization ClassDefinition : structured_aliases ClassDefinition : subclass_of ClassDefinition : title ClassDefinition : todos ClassDefinition : tree_root ClassDefinition : union_of ClassDefinition : unique_keys ClassDefinition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition ClassDefinition [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance slots 0..* SlotDefinition collection of slot names that are applicable to a class direct slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition direct attributes 0..* SlotDefinition Inline definition of slots direct class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... direct subclass_of 0..1 Uriorcurie rdfs:subClassOf to be emitted in OWL generation direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct defining_slots 0..* SlotDefinition The combination of is a plus defining slots form a genus-differentia definiti... direct tree_root 0..1 Boolean indicator that this is the root class in tree structures direct unique_keys 0..* UniqueKey A collection of unique keys for this class direct rules 0..* ClassRule the collection of rules that apply to all members of this class direct classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct represents_relationship 0..1 Boolean true if this class represents a relationship rather than an entity direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition status 0..1 Uriorcurie status of the element Definition alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata last_updated_on 0..1 Datetime time at which the element was last updated Definition see_also 0..* Uriorcurie a reference CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata created_on 0..1 Datetime time at which the element was created Definition any_of 0..1 Expression holds if at least one of the expressions hold ClassExpression id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition name 1..1 NONE the unique name of the element within the context of the schema Element is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition exactly_one_of 0..1 Expression holds if only one of the expressions hold ClassExpression in_language 0..1 String CommonMetadata slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata modified_by 0..1 Uriorcurie agent that modified the element Definition in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata all_of 0..1 Expression holds if all of the expressions hold ClassExpression notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element none_of 0..1 Expression holds if none of the expressions hold ClassExpression created_by 0..1 Uriorcurie agent that created the element Definition rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used SchemaDefinition classes range ClassDefinition SlotDefinition domain range ClassDefinition SlotDefinition domain_of range ClassDefinition ClassDefinition slots domain ClassDefinition ClassDefinition slot_usage domain ClassDefinition ClassDefinition attributes domain ClassDefinition ClassDefinition class_uri domain ClassDefinition ClassDefinition subclass_of domain ClassDefinition ClassDefinition union_of range ClassDefinition ClassDefinition defining_slots domain ClassDefinition ClassDefinition tree_root domain ClassDefinition ClassDefinition unique_keys domain ClassDefinition ClassDefinition rules domain ClassDefinition ClassDefinition classification_rules domain ClassDefinition ClassDefinition represents_relationship domain ClassDefinition ClassDefinition disjoint_with range ClassDefinition ClassDefinition is_a range ClassDefinition ClassDefinition mixins range ClassDefinition ClassDefinition apply_to range ClassDefinition Aliases table record template message observation Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassDefinition native linkml:ClassDefinition close owl:Class LinkML Source Direct name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slots: - slots - slot_usage - attributes - class_uri - subclass_of - union_of - defining_slots - tree_root - unique_keys - rules - classification_rules - slot_names_unique - represents_relationship - disjoint_with - children_are_mutually_disjoint slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition Induced name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition attributes: slots: name: slots description: collection of slot names that are applicable to a class comments: - This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally, in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 19 domain: class_definition multivalued: true alias: slots owner: class_definition domain_of: - class_definition range: slot_definition slot_usage: name: slot_usage description: the refinement of a slot in the context of the containing class definition. comments: - Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 23 domain: class_definition multivalued: true alias: slot_usage owner: class_definition domain_of: - class_definition range: slot_definition inlined: true attributes: name: attributes description: Inline definition of slots comments: - attributes are an alternative way of defining new slots. An attribute adds a slot to the global space in the form <class_name>__<slot_name> (lower case, double underscores). Attributes can be specialized via slot_usage. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 29 domain: class_definition multivalued: true alias: attributes owner: class_definition domain_of: - class_definition range: slot_definition inlined: true class_uri: name: class_uri description: URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: class_definition ifabsent: class_curie alias: class_uri owner: class_definition domain_of: - class_definition range: uriorcurie subclass_of: name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of owner: class_definition domain_of: - class_definition range: uriorcurie union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: class_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition defining_slots: name: defining_slots description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true inherited: true alias: defining_slots owner: class_definition domain_of: - class_definition range: slot_definition tree_root: name: tree_root description: indicator that this is the root class in tree structures notes: - each schema should have at most one tree root in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: class_definition alias: tree_root owner: class_definition domain_of: - class_definition range: boolean unique_keys: name: unique_keys description: A collection of unique keys for this class. Unique keys may be singular or compound. in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta exact_mappings: - owl:hasKey rank: 1000 domain: class_definition multivalued: true alias: unique_keys owner: class_definition domain_of: - class_definition range: unique_key inlined: true rules: name: rules description: the collection of rules that apply to all members of this class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: sh:rule multivalued: true alias: rules owner: class_definition domain_of: - class_definition - class_definition range: class_rule inlined: true classification_rules: name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules owner: class_definition domain_of: - class_definition range: anonymous_class_expression inlined: true slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: class_definition domain_of: - schema_definition - class_definition range: boolean represents_relationship: name: represents_relationship description: true if this class represents a relationship rather than an entity comments: - in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond - in the context of RDF, this should be used when instances of the class are `rdf:Statement`s - in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes from_schema: https://w3id.org/linkml/meta see_also: - rdf:Statement - https://patterns.dataincubator.org/book/qualified-relation.html aliases: - is_reified rank: 1000 status: testing domain: class_definition inherited: true alias: represents_relationship owner: class_definition domain_of: - class_definition range: boolean disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: class_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: class_definition domain_of: - slot_definition - class_definition range: boolean any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_definition domain_of: - class_expression range: slot_definition inlined: true is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: class_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: class_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: class_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: class_definition domain_of: - definition - definition range: class_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: class_definition domain_of: - definition - definition range: class_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: class_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: class_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: class_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: class_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: class_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: class_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: class_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: class_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: class_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: class_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: class_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: class_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: ClassDefinition"},{"location":"ClassDefinition/#class-classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments URI: linkml:ClassDefinition classDiagram class ClassDefinition ClassExpression <|-- ClassDefinition Definition <|-- ClassDefinition ClassDefinition : abstract ClassDefinition : aliases ClassDefinition : all_of ClassDefinition : alt_descriptions ClassDefinition : annotations ClassDefinition : any_of ClassDefinition : apply_to ClassDefinition : attributes ClassDefinition : broad_mappings ClassDefinition : children_are_mutually_disjoint ClassDefinition : class_uri ClassDefinition : classification_rules ClassDefinition : close_mappings ClassDefinition : comments ClassDefinition : conforms_to ClassDefinition : created_by ClassDefinition : created_on ClassDefinition : defining_slots ClassDefinition : definition_uri ClassDefinition : deprecated ClassDefinition : deprecated_element_has_exact_replacement ClassDefinition : deprecated_element_has_possible_replacement ClassDefinition : description ClassDefinition : disjoint_with ClassDefinition : exact_mappings ClassDefinition : exactly_one_of ClassDefinition : examples ClassDefinition : extensions ClassDefinition : from_schema ClassDefinition : id_prefixes ClassDefinition : imported_from ClassDefinition : in_language ClassDefinition : in_subset ClassDefinition : is_a ClassDefinition : last_updated_on ClassDefinition : local_names ClassDefinition : mappings ClassDefinition : mixin ClassDefinition : mixins ClassDefinition : modified_by ClassDefinition : name ClassDefinition : narrow_mappings ClassDefinition : none_of ClassDefinition : notes ClassDefinition : rank ClassDefinition : related_mappings ClassDefinition : represents_relationship ClassDefinition : rules ClassDefinition : see_also ClassDefinition : slot_conditions ClassDefinition : slot_names_unique ClassDefinition : slot_usage ClassDefinition : slots ClassDefinition : source ClassDefinition : status ClassDefinition : string_serialization ClassDefinition : structured_aliases ClassDefinition : subclass_of ClassDefinition : title ClassDefinition : todos ClassDefinition : tree_root ClassDefinition : union_of ClassDefinition : unique_keys ClassDefinition : values_from","title":"Class: ClassDefinition"},{"location":"ClassDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition ClassDefinition [ ClassExpression ]","title":"Inheritance"},{"location":"ClassDefinition/#slots","text":"Name Cardinality and Range Description Inheritance slots 0..* SlotDefinition collection of slot names that are applicable to a class direct slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition direct attributes 0..* SlotDefinition Inline definition of slots direct class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... direct subclass_of 0..1 Uriorcurie rdfs:subClassOf to be emitted in OWL generation direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct defining_slots 0..* SlotDefinition The combination of is a plus defining slots form a genus-differentia definiti... direct tree_root 0..1 Boolean indicator that this is the root class in tree structures direct unique_keys 0..* UniqueKey A collection of unique keys for this class direct rules 0..* ClassRule the collection of rules that apply to all members of this class direct classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct represents_relationship 0..1 Boolean true if this class represents a relationship rather than an entity direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition status 0..1 Uriorcurie status of the element Definition alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata last_updated_on 0..1 Datetime time at which the element was last updated Definition see_also 0..* Uriorcurie a reference CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata created_on 0..1 Datetime time at which the element was created Definition any_of 0..1 Expression holds if at least one of the expressions hold ClassExpression id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition name 1..1 NONE the unique name of the element within the context of the schema Element is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition exactly_one_of 0..1 Expression holds if only one of the expressions hold ClassExpression in_language 0..1 String CommonMetadata slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata modified_by 0..1 Uriorcurie agent that modified the element Definition in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata all_of 0..1 Expression holds if all of the expressions hold ClassExpression notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element none_of 0..1 Expression holds if none of the expressions hold ClassExpression created_by 0..1 Uriorcurie agent that created the element Definition rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"ClassDefinition/#usages","text":"used by used in type used SchemaDefinition classes range ClassDefinition SlotDefinition domain range ClassDefinition SlotDefinition domain_of range ClassDefinition ClassDefinition slots domain ClassDefinition ClassDefinition slot_usage domain ClassDefinition ClassDefinition attributes domain ClassDefinition ClassDefinition class_uri domain ClassDefinition ClassDefinition subclass_of domain ClassDefinition ClassDefinition union_of range ClassDefinition ClassDefinition defining_slots domain ClassDefinition ClassDefinition tree_root domain ClassDefinition ClassDefinition unique_keys domain ClassDefinition ClassDefinition rules domain ClassDefinition ClassDefinition classification_rules domain ClassDefinition ClassDefinition represents_relationship domain ClassDefinition ClassDefinition disjoint_with range ClassDefinition ClassDefinition is_a range ClassDefinition ClassDefinition mixins range ClassDefinition ClassDefinition apply_to range ClassDefinition","title":"Usages"},{"location":"ClassDefinition/#aliases","text":"table record template message observation","title":"Aliases"},{"location":"ClassDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:ClassDefinition native linkml:ClassDefinition close owl:Class","title":"Mappings"},{"location":"ClassDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassDefinition/#direct","text":"name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slots: - slots - slot_usage - attributes - class_uri - subclass_of - union_of - defining_slots - tree_root - unique_keys - rules - classification_rules - slot_names_unique - represents_relationship - disjoint_with - children_are_mutually_disjoint slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition","title":"Direct"},{"location":"ClassDefinition/#induced","text":"name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition attributes: slots: name: slots description: collection of slot names that are applicable to a class comments: - This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally, in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 19 domain: class_definition multivalued: true alias: slots owner: class_definition domain_of: - class_definition range: slot_definition slot_usage: name: slot_usage description: the refinement of a slot in the context of the containing class definition. comments: - Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 23 domain: class_definition multivalued: true alias: slot_usage owner: class_definition domain_of: - class_definition range: slot_definition inlined: true attributes: name: attributes description: Inline definition of slots comments: - attributes are an alternative way of defining new slots. An attribute adds a slot to the global space in the form <class_name>__<slot_name> (lower case, double underscores). Attributes can be specialized via slot_usage. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 29 domain: class_definition multivalued: true alias: attributes owner: class_definition domain_of: - class_definition range: slot_definition inlined: true class_uri: name: class_uri description: URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: class_definition ifabsent: class_curie alias: class_uri owner: class_definition domain_of: - class_definition range: uriorcurie subclass_of: name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of owner: class_definition domain_of: - class_definition range: uriorcurie union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: class_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition defining_slots: name: defining_slots description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true inherited: true alias: defining_slots owner: class_definition domain_of: - class_definition range: slot_definition tree_root: name: tree_root description: indicator that this is the root class in tree structures notes: - each schema should have at most one tree root in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: class_definition alias: tree_root owner: class_definition domain_of: - class_definition range: boolean unique_keys: name: unique_keys description: A collection of unique keys for this class. Unique keys may be singular or compound. in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta exact_mappings: - owl:hasKey rank: 1000 domain: class_definition multivalued: true alias: unique_keys owner: class_definition domain_of: - class_definition range: unique_key inlined: true rules: name: rules description: the collection of rules that apply to all members of this class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: sh:rule multivalued: true alias: rules owner: class_definition domain_of: - class_definition - class_definition range: class_rule inlined: true classification_rules: name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules owner: class_definition domain_of: - class_definition range: anonymous_class_expression inlined: true slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: class_definition domain_of: - schema_definition - class_definition range: boolean represents_relationship: name: represents_relationship description: true if this class represents a relationship rather than an entity comments: - in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond - in the context of RDF, this should be used when instances of the class are `rdf:Statement`s - in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes from_schema: https://w3id.org/linkml/meta see_also: - rdf:Statement - https://patterns.dataincubator.org/book/qualified-relation.html aliases: - is_reified rank: 1000 status: testing domain: class_definition inherited: true alias: represents_relationship owner: class_definition domain_of: - class_definition range: boolean disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: class_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: class_definition domain_of: - slot_definition - class_definition range: boolean any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_definition domain_of: - class_expression range: slot_definition inlined: true is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: class_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: class_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: class_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: class_definition domain_of: - definition - definition range: class_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: class_definition domain_of: - definition - definition range: class_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: class_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: class_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: class_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: class_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: class_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: class_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: class_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: class_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: class_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: class_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: class_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: class_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"ClassExpression/","text":"Class: ClassExpression A boolean expression that can be used to dynamically determine membership of a class URI: linkml:ClassExpression classDiagram class ClassExpression ClassExpression <|-- AnonymousClassExpression ClassExpression <|-- ClassDefinition ClassExpression : all_of ClassExpression : any_of ClassExpression : exactly_one_of ClassExpression : none_of ClassExpression : slot_conditions Slots Name Cardinality and Range Description Inheritance any_of 0..1 Expression holds if at least one of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct none_of 0..1 Expression holds if none of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression direct Mixin Usage mixed into description AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... Usages used by used in type used ClassExpression slot_conditions domain ClassExpression AnonymousClassExpression slot_conditions domain ClassExpression ClassDefinition slot_conditions domain ClassExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassExpression native linkml:ClassExpression LinkML Source Direct name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slots: - any_of - exactly_one_of - none_of - all_of - slot_conditions slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression Induced name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression attributes: any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_expression domain_of: - class_expression range: slot_definition inlined: true","title":"Class: ClassExpression"},{"location":"ClassExpression/#class-classexpression","text":"A boolean expression that can be used to dynamically determine membership of a class URI: linkml:ClassExpression classDiagram class ClassExpression ClassExpression <|-- AnonymousClassExpression ClassExpression <|-- ClassDefinition ClassExpression : all_of ClassExpression : any_of ClassExpression : exactly_one_of ClassExpression : none_of ClassExpression : slot_conditions","title":"Class: ClassExpression"},{"location":"ClassExpression/#slots","text":"Name Cardinality and Range Description Inheritance any_of 0..1 Expression holds if at least one of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct none_of 0..1 Expression holds if none of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression direct","title":"Slots"},{"location":"ClassExpression/#mixin-usage","text":"mixed into description AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Mixin Usage"},{"location":"ClassExpression/#usages","text":"used by used in type used ClassExpression slot_conditions domain ClassExpression AnonymousClassExpression slot_conditions domain ClassExpression ClassDefinition slot_conditions domain ClassExpression","title":"Usages"},{"location":"ClassExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassExpression/#mappings","text":"Mapping Type Mapped Value self linkml:ClassExpression native linkml:ClassExpression","title":"Mappings"},{"location":"ClassExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassExpression/#direct","text":"name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slots: - any_of - exactly_one_of - none_of - all_of - slot_conditions slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression","title":"Direct"},{"location":"ClassExpression/#induced","text":"name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression attributes: any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_expression domain_of: - class_expression range: slot_definition inlined: true","title":"Induced"},{"location":"ClassLevelRule/","text":"Class: ClassLevelRule A rule that is applied to classes NOTE : this is an abstract class and should not be instantiated directly URI: linkml:ClassLevelRule classDiagram class ClassLevelRule ClassLevelRule <|-- ClassRule Inheritance ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassLevelRule native linkml:ClassLevelRule LinkML Source Direct name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing Induced name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing","title":"Class: ClassLevelRule"},{"location":"ClassLevelRule/#class-classlevelrule","text":"A rule that is applied to classes NOTE : this is an abstract class and should not be instantiated directly URI: linkml:ClassLevelRule classDiagram class ClassLevelRule ClassLevelRule <|-- ClassRule","title":"Class: ClassLevelRule"},{"location":"ClassLevelRule/#inheritance","text":"ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"ClassLevelRule/#slots","text":"Name Cardinality and Range Description Inheritance","title":"Slots"},{"location":"ClassLevelRule/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassLevelRule/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassLevelRule/#mappings","text":"Mapping Type Mapped Value self linkml:ClassLevelRule native linkml:ClassLevelRule","title":"Mappings"},{"location":"ClassLevelRule/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassLevelRule/#direct","text":"name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing","title":"Direct"},{"location":"ClassLevelRule/#induced","text":"name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing","title":"Induced"},{"location":"ClassRule/","text":"Class: ClassRule A rule that applies to instances of a class URI: linkml:ClassRule classDiagram class ClassRule Extensible <|-- ClassRule Annotatable <|-- ClassRule CommonMetadata <|-- ClassRule ClassLevelRule <|-- ClassRule ClassRule : aliases ClassRule : alt_descriptions ClassRule : annotations ClassRule : bidirectional ClassRule : broad_mappings ClassRule : close_mappings ClassRule : comments ClassRule : deactivated ClassRule : deprecated ClassRule : deprecated_element_has_exact_replacement ClassRule : deprecated_element_has_possible_replacement ClassRule : description ClassRule : elseconditions ClassRule : exact_mappings ClassRule : examples ClassRule : extensions ClassRule : from_schema ClassRule : imported_from ClassRule : in_language ClassRule : in_subset ClassRule : mappings ClassRule : narrow_mappings ClassRule : notes ClassRule : open_world ClassRule : postconditions ClassRule : preconditions ClassRule : rank ClassRule : related_mappings ClassRule : see_also ClassRule : source ClassRule : structured_aliases ClassRule : title ClassRule : todos Inheritance ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... direct postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... direct elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... direct bidirectional 0..1 Boolean in addition to preconditions entailing postconditions, the postconditions ent... direct open_world 0..1 Boolean if true, the the postconditions may be omitted in instance data, but it is va... direct rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... direct deactivated 0..1 Boolean a deactivated rule is not executed by the rules engine direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used ClassDefinition rules range ClassRule Aliases if rule Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassRule native linkml:ClassRule close sh:TripleRule, swrl:Imp LinkML Source Direct name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing slots: - preconditions - postconditions - elseconditions - bidirectional - open_world - rank - deactivated Induced name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing attributes: preconditions: name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true postconditions: name: postconditions description: an expression that must hold for an instance of the class, if the preconditions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - then - head - consequents close_mappings: - swrl:body rank: 113 alias: postconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true elseconditions: name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true bidirectional: name: bidirectional description: in addition to preconditions entailing postconditions, the postconditions entail the preconditions in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - iff - if and only if rank: 1000 alias: bidirectional owner: class_rule domain_of: - class_rule range: boolean open_world: name: open_world description: if true, the the postconditions may be omitted in instance data, but it is valid for an inference engine to add these in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: open_world owner: class_rule domain_of: - class_rule range: boolean rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_rule domain_of: - common_metadata - class_rule range: integer deactivated: name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated owner: class_rule domain_of: - class_rule range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_rule domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_rule domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_rule domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_rule domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_rule domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_rule domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_rule domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_rule domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_rule domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_rule domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_rule domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_rule domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_rule domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_rule domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_rule domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_rule domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_rule domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_rule domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_rule domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie","title":"Class: ClassRule"},{"location":"ClassRule/#class-classrule","text":"A rule that applies to instances of a class URI: linkml:ClassRule classDiagram class ClassRule Extensible <|-- ClassRule Annotatable <|-- ClassRule CommonMetadata <|-- ClassRule ClassLevelRule <|-- ClassRule ClassRule : aliases ClassRule : alt_descriptions ClassRule : annotations ClassRule : bidirectional ClassRule : broad_mappings ClassRule : close_mappings ClassRule : comments ClassRule : deactivated ClassRule : deprecated ClassRule : deprecated_element_has_exact_replacement ClassRule : deprecated_element_has_possible_replacement ClassRule : description ClassRule : elseconditions ClassRule : exact_mappings ClassRule : examples ClassRule : extensions ClassRule : from_schema ClassRule : imported_from ClassRule : in_language ClassRule : in_subset ClassRule : mappings ClassRule : narrow_mappings ClassRule : notes ClassRule : open_world ClassRule : postconditions ClassRule : preconditions ClassRule : rank ClassRule : related_mappings ClassRule : see_also ClassRule : source ClassRule : structured_aliases ClassRule : title ClassRule : todos","title":"Class: ClassRule"},{"location":"ClassRule/#inheritance","text":"ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"ClassRule/#slots","text":"Name Cardinality and Range Description Inheritance preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... direct postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... direct elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... direct bidirectional 0..1 Boolean in addition to preconditions entailing postconditions, the postconditions ent... direct open_world 0..1 Boolean if true, the the postconditions may be omitted in instance data, but it is va... direct rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... direct deactivated 0..1 Boolean a deactivated rule is not executed by the rules engine direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"ClassRule/#usages","text":"used by used in type used ClassDefinition rules range ClassRule","title":"Usages"},{"location":"ClassRule/#aliases","text":"if rule","title":"Aliases"},{"location":"ClassRule/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassRule/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassRule/#mappings","text":"Mapping Type Mapped Value self linkml:ClassRule native linkml:ClassRule close sh:TripleRule, swrl:Imp","title":"Mappings"},{"location":"ClassRule/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassRule/#direct","text":"name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing slots: - preconditions - postconditions - elseconditions - bidirectional - open_world - rank - deactivated","title":"Direct"},{"location":"ClassRule/#induced","text":"name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing attributes: preconditions: name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true postconditions: name: postconditions description: an expression that must hold for an instance of the class, if the preconditions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - then - head - consequents close_mappings: - swrl:body rank: 113 alias: postconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true elseconditions: name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true bidirectional: name: bidirectional description: in addition to preconditions entailing postconditions, the postconditions entail the preconditions in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - iff - if and only if rank: 1000 alias: bidirectional owner: class_rule domain_of: - class_rule range: boolean open_world: name: open_world description: if true, the the postconditions may be omitted in instance data, but it is valid for an inference engine to add these in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: open_world owner: class_rule domain_of: - class_rule range: boolean rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_rule domain_of: - common_metadata - class_rule range: integer deactivated: name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated owner: class_rule domain_of: - class_rule range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_rule domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_rule domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_rule domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_rule domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_rule domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_rule domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_rule domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_rule domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_rule domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_rule domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_rule domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_rule domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_rule domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_rule domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_rule domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_rule domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_rule domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_rule domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_rule domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie","title":"Induced"},{"location":"CommonMetadata/","text":"Class: CommonMetadata Generic metadata shared across definitions URI: linkml:CommonMetadata classDiagram class CommonMetadata CommonMetadata <|-- Element CommonMetadata <|-- StructuredAlias CommonMetadata <|-- AnonymousExpression CommonMetadata <|-- PathExpression CommonMetadata <|-- ClassRule CommonMetadata <|-- PatternExpression CommonMetadata <|-- ImportExpression CommonMetadata <|-- PermissibleValue CommonMetadata <|-- UniqueKey CommonMetadata : aliases CommonMetadata : alt_descriptions CommonMetadata : broad_mappings CommonMetadata : close_mappings CommonMetadata : comments CommonMetadata : deprecated CommonMetadata : deprecated_element_has_exact_replacement CommonMetadata : deprecated_element_has_possible_replacement CommonMetadata : description CommonMetadata : exact_mappings CommonMetadata : examples CommonMetadata : from_schema CommonMetadata : imported_from CommonMetadata : in_language CommonMetadata : in_subset CommonMetadata : mappings CommonMetadata : narrow_mappings CommonMetadata : notes CommonMetadata : rank CommonMetadata : related_mappings CommonMetadata : see_also CommonMetadata : source CommonMetadata : structured_aliases CommonMetadata : title CommonMetadata : todos Slots Name Cardinality and Range Description Inheritance description 0..1 recommended NONE a description of the element's purpose and use direct alt_descriptions 0..* AltDescription A sourced alternative description for an element direct title 0..1 NONE the official title of the element direct deprecated 0..1 String Description of why and when this element will no longer be used direct todos 0..* String Outstanding issue that needs resolution direct notes 0..* NONE editorial notes about an element intended for internal consumption direct comments 0..* NONE notes and comments about an element intended for external consumption direct examples 0..* Example example usages of an element direct in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... direct from_schema 0..1 Uri id of the schema that defined the element direct imported_from 0..1 String the imports entry that this element was derived from direct source 0..1 Uriorcurie A related resource from which the element is derived direct in_language 0..1 String direct see_also 0..* Uriorcurie a reference direct deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... direct deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... direct aliases 0..* String Alaternate names for the element direct structured_aliases 0..* StructuredAlias A list of structured_alias objects direct mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... direct exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... direct close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... direct related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... direct narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... direct rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... direct Mixin Usage mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:CommonMetadata native linkml:CommonMetadata LinkML Source Direct name: common_metadata description: Generic metadata shared across definitions in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true slots: - description - alt_descriptions - title - deprecated - todos - notes - comments - examples - in_subset - from_schema - imported_from - source - in_language - see_also - deprecated element has exact replacement - deprecated element has possible replacement - aliases - structured_aliases - mappings - exact mappings - close mappings - related mappings - narrow mappings - broad mappings - rank Induced name: common_metadata description: Generic metadata shared across definitions in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true attributes: description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: common_metadata domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: common_metadata domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: common_metadata domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: common_metadata domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: common_metadata domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: common_metadata domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: common_metadata domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: common_metadata domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: common_metadata domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: common_metadata domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: common_metadata domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: common_metadata domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: common_metadata domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: common_metadata domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: common_metadata domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: common_metadata domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: common_metadata domain_of: - 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AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: common_metadata domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: common_metadata domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: common_metadata domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: common_metadata domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: common_metadata domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: common_metadata domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: common_metadata domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: common_metadata domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: common_metadata domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: common_metadata domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: common_metadata domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: common_metadata domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: common_metadata domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: common_metadata domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: common_metadata domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: 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Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str","title":"Type: Date"},{"location":"Date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Date/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"DateOrDatetime/","text":"Type: DateOrDatetime Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#type-dateordatetime","text":"Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DateOrDatetime/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Datetime/","text":"Type: Datetime The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str","title":"Type: Datetime"},{"location":"Datetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Datetime/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Decimal/","text":"Type: Decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal","title":"Type: Decimal"},{"location":"Decimal/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Decimal/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Definition/","text":"Class: Definition abstract base class for core metaclasses NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Definition classDiagram class Definition Element <|-- Definition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from Definition <|-- EnumDefinition Definition <|-- SlotDefinition Definition <|-- ClassDefinition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ] SlotDefinition [ SlotExpression ] ClassDefinition [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... direct mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... direct apply_to 0..* Definition Used to extend class or slot definitions direct values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... direct created_by 0..1 Uriorcurie agent that created the element direct created_on 0..1 Datetime time at which the element was created direct last_updated_on 0..1 Datetime time at which the element was last updated direct modified_by 0..1 Uriorcurie agent that modified the element direct status 0..1 Uriorcurie status of the element direct string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element name 1..1 NONE the unique name of the element within the context of the schema Element rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used SchemaDefinition slot_names_unique domain Definition TypeExpression pattern domain Definition TypeExpression structured_pattern domain Definition AnonymousTypeExpression pattern domain Definition AnonymousTypeExpression structured_pattern domain Definition TypeDefinition pattern domain Definition TypeDefinition structured_pattern domain Definition Definition is_a domain Definition Definition is_a range Definition Definition abstract domain Definition Definition mixin domain Definition Definition mixins domain Definition Definition mixins range Definition Definition apply_to domain Definition Definition apply_to range Definition Definition values_from domain Definition Definition string_serialization domain Definition EnumDefinition is_a domain Definition EnumDefinition is_a range Definition EnumDefinition abstract domain Definition EnumDefinition mixin domain Definition EnumDefinition mixins domain Definition EnumDefinition mixins range Definition EnumDefinition apply_to domain Definition EnumDefinition apply_to range Definition EnumDefinition values_from domain Definition EnumDefinition string_serialization domain Definition SlotExpression pattern domain Definition SlotExpression structured_pattern domain Definition AnonymousSlotExpression pattern domain Definition AnonymousSlotExpression structured_pattern domain Definition SlotDefinition owner range Definition SlotDefinition disjoint_with domain Definition SlotDefinition children_are_mutually_disjoint domain Definition SlotDefinition pattern domain Definition SlotDefinition structured_pattern domain Definition SlotDefinition is_a domain Definition SlotDefinition abstract domain Definition SlotDefinition mixin domain Definition SlotDefinition mixins domain Definition SlotDefinition apply_to domain Definition SlotDefinition values_from domain Definition SlotDefinition string_serialization domain Definition AnonymousClassExpression is_a domain Definition AnonymousClassExpression is_a range Definition ClassDefinition slot_names_unique domain Definition ClassDefinition disjoint_with domain Definition ClassDefinition children_are_mutually_disjoint domain Definition ClassDefinition is_a domain Definition ClassDefinition abstract domain Definition ClassDefinition mixin domain Definition ClassDefinition mixins domain Definition ClassDefinition apply_to domain Definition ClassDefinition values_from domain Definition ClassDefinition string_serialization domain Definition See Also https://en.wikipedia.org/wiki/Data_element_definition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Definition native linkml:Definition LinkML Source Direct name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true slots: - is_a - abstract - mixin - mixins - apply_to - values_from - created_by - created_on - last_updated_on - modified_by - status - string_serialization Induced name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: definition domain_of: - common_metadata - class_rule range: integer","title":"Class: Definition"},{"location":"Definition/#class-definition","text":"abstract base class for core metaclasses NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Definition classDiagram class Definition Element <|-- Definition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from Definition <|-- EnumDefinition Definition <|-- SlotDefinition Definition <|-- ClassDefinition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from","title":"Class: Definition"},{"location":"Definition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ] SlotDefinition [ SlotExpression ] ClassDefinition [ ClassExpression ]","title":"Inheritance"},{"location":"Definition/#slots","text":"Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... direct mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... direct apply_to 0..* Definition Used to extend class or slot definitions direct values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... direct created_by 0..1 Uriorcurie agent that created the element direct created_on 0..1 Datetime time at which the element was created direct last_updated_on 0..1 Datetime time at which the element was last updated direct modified_by 0..1 Uriorcurie agent that modified the element direct status 0..1 Uriorcurie status of the element direct string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element name 1..1 NONE the unique name of the element within the context of the schema Element rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"Definition/#usages","text":"used by used in type used SchemaDefinition slot_names_unique domain Definition TypeExpression pattern domain Definition TypeExpression structured_pattern domain Definition AnonymousTypeExpression pattern domain Definition AnonymousTypeExpression structured_pattern domain Definition TypeDefinition pattern domain Definition TypeDefinition structured_pattern domain Definition Definition is_a domain Definition Definition is_a range Definition Definition abstract domain Definition Definition mixin domain Definition Definition mixins domain Definition Definition mixins range Definition Definition apply_to domain Definition Definition apply_to range Definition Definition values_from domain Definition Definition string_serialization domain Definition EnumDefinition is_a domain Definition EnumDefinition is_a range Definition EnumDefinition abstract domain Definition EnumDefinition mixin domain Definition EnumDefinition mixins domain Definition EnumDefinition mixins range Definition EnumDefinition apply_to domain Definition EnumDefinition apply_to range Definition EnumDefinition values_from domain Definition EnumDefinition string_serialization domain Definition SlotExpression pattern domain Definition SlotExpression structured_pattern domain Definition AnonymousSlotExpression pattern domain Definition AnonymousSlotExpression structured_pattern domain Definition SlotDefinition owner range Definition SlotDefinition disjoint_with domain Definition SlotDefinition children_are_mutually_disjoint domain Definition SlotDefinition pattern domain Definition SlotDefinition structured_pattern domain Definition SlotDefinition is_a domain Definition SlotDefinition abstract domain Definition SlotDefinition mixin domain Definition SlotDefinition mixins domain Definition SlotDefinition apply_to domain Definition SlotDefinition values_from domain Definition SlotDefinition string_serialization domain Definition AnonymousClassExpression is_a domain Definition AnonymousClassExpression is_a range Definition ClassDefinition slot_names_unique domain Definition ClassDefinition disjoint_with domain Definition ClassDefinition children_are_mutually_disjoint domain Definition ClassDefinition is_a domain Definition ClassDefinition abstract domain Definition ClassDefinition mixin domain Definition ClassDefinition mixins domain Definition ClassDefinition apply_to domain Definition ClassDefinition values_from domain Definition ClassDefinition string_serialization domain Definition","title":"Usages"},{"location":"Definition/#see-also","text":"https://en.wikipedia.org/wiki/Data_element_definition","title":"See Also"},{"location":"Definition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Definition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Definition/#mappings","text":"Mapping Type Mapped Value self linkml:Definition native linkml:Definition","title":"Mappings"},{"location":"Definition/#linkml-source","text":"","title":"LinkML Source"},{"location":"Definition/#direct","text":"name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true slots: - is_a - abstract - mixin - mixins - apply_to - values_from - created_by - created_on - last_updated_on - modified_by - status - string_serialization","title":"Direct"},{"location":"Definition/#induced","text":"name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Double/","text":"Type: Double A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double","title":"Type: Double"},{"location":"Double/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Double/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Element/","text":"Class: Element a named element in the model NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Element classDiagram class Element Extensible <|-- Element Annotatable <|-- Element CommonMetadata <|-- Element Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos Element <|-- SchemaDefinition Element <|-- TypeDefinition Element <|-- SubsetDefinition Element <|-- Definition Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos Inheritance Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition TypeDefinition [ TypeExpression ] SubsetDefinition Definition Slots Name Cardinality and Range Description Inheritance name 1..1 NONE the unique name of the element within the context of the schema direct id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... direct definition_uri 0..1 Uriorcurie the \"native\" URI of the element direct local_names 0..* LocalName direct conforms_to 0..1 NONE An established standard to which the element conforms direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used CommonMetadata description domain Element CommonMetadata alt_descriptions domain Element CommonMetadata title domain Element CommonMetadata deprecated domain Element CommonMetadata todos domain Element CommonMetadata notes domain Element CommonMetadata comments domain Element CommonMetadata examples domain Element CommonMetadata in_subset domain Element CommonMetadata from_schema domain Element CommonMetadata imported_from domain Element CommonMetadata source domain Element CommonMetadata see_also domain Element CommonMetadata aliases domain Element Element name domain Element Element id_prefixes domain Element Element definition_uri domain Element Element local_names domain Element Element conforms_to domain Element Element description domain Element Element alt_descriptions domain Element Element title domain Element Element deprecated domain Element Element todos domain Element Element notes domain Element Element comments domain Element Element examples domain Element Element in_subset domain Element Element from_schema domain Element Element imported_from domain Element Element source domain Element Element see_also domain Element Element aliases domain Element SchemaDefinition keywords domain Element SchemaDefinition name domain Element SchemaDefinition id_prefixes domain Element SchemaDefinition definition_uri domain Element SchemaDefinition local_names domain Element SchemaDefinition conforms_to domain Element SchemaDefinition description domain Element SchemaDefinition alt_descriptions domain Element SchemaDefinition title domain Element SchemaDefinition deprecated domain Element SchemaDefinition todos domain Element SchemaDefinition notes domain Element SchemaDefinition comments domain Element SchemaDefinition examples domain Element SchemaDefinition in_subset domain Element SchemaDefinition from_schema domain Element SchemaDefinition imported_from domain Element SchemaDefinition source domain Element SchemaDefinition see_also domain Element SchemaDefinition aliases domain Element TypeDefinition union_of domain Element TypeDefinition name domain Element TypeDefinition id_prefixes domain Element TypeDefinition definition_uri domain Element TypeDefinition local_names domain Element TypeDefinition conforms_to domain Element TypeDefinition description domain Element TypeDefinition alt_descriptions domain Element TypeDefinition title domain Element TypeDefinition deprecated domain Element TypeDefinition todos domain Element TypeDefinition notes domain Element TypeDefinition comments domain Element TypeDefinition examples domain Element TypeDefinition in_subset domain Element TypeDefinition from_schema domain Element TypeDefinition imported_from domain Element TypeDefinition source domain Element TypeDefinition see_also domain Element TypeDefinition aliases domain Element SubsetDefinition name domain Element SubsetDefinition id_prefixes domain Element SubsetDefinition definition_uri domain Element SubsetDefinition local_names domain Element SubsetDefinition conforms_to domain Element SubsetDefinition description domain Element SubsetDefinition alt_descriptions domain Element SubsetDefinition title domain Element SubsetDefinition deprecated domain Element SubsetDefinition todos domain Element SubsetDefinition notes domain Element SubsetDefinition comments domain Element SubsetDefinition examples domain Element SubsetDefinition in_subset domain Element SubsetDefinition from_schema domain Element SubsetDefinition imported_from domain Element SubsetDefinition source domain Element SubsetDefinition see_also domain Element SubsetDefinition aliases domain Element Definition created_by domain Element Definition created_on domain Element Definition last_updated_on domain Element Definition modified_by domain Element Definition status domain Element Definition name domain Element Definition id_prefixes domain Element Definition definition_uri domain Element Definition local_names domain Element Definition conforms_to domain Element Definition description domain Element Definition alt_descriptions domain Element Definition title domain Element Definition deprecated domain Element Definition todos domain Element Definition notes domain Element Definition comments domain Element Definition examples domain Element Definition in_subset domain Element Definition from_schema domain Element Definition imported_from domain Element Definition source domain Element Definition see_also domain Element Definition aliases domain Element EnumDefinition created_by domain Element EnumDefinition created_on domain Element EnumDefinition last_updated_on domain Element EnumDefinition modified_by domain Element EnumDefinition status domain Element EnumDefinition name domain Element EnumDefinition id_prefixes domain Element EnumDefinition definition_uri domain Element EnumDefinition local_names domain Element EnumDefinition conforms_to domain Element EnumDefinition description domain Element EnumDefinition alt_descriptions domain Element EnumDefinition title domain Element EnumDefinition deprecated domain Element EnumDefinition todos domain Element EnumDefinition notes domain Element EnumDefinition comments domain Element EnumDefinition examples domain Element EnumDefinition in_subset domain Element EnumDefinition from_schema domain Element EnumDefinition imported_from domain Element EnumDefinition source domain Element EnumDefinition see_also domain Element EnumDefinition aliases domain Element StructuredAlias description domain Element StructuredAlias alt_descriptions domain Element StructuredAlias title domain Element StructuredAlias deprecated domain Element StructuredAlias todos domain Element StructuredAlias notes domain Element StructuredAlias comments domain Element StructuredAlias examples domain Element StructuredAlias in_subset domain Element StructuredAlias from_schema domain Element StructuredAlias imported_from domain Element StructuredAlias source domain Element StructuredAlias see_also domain Element StructuredAlias aliases domain Element AnonymousExpression description domain Element AnonymousExpression alt_descriptions domain Element AnonymousExpression title domain Element AnonymousExpression deprecated domain Element AnonymousExpression todos domain Element AnonymousExpression notes domain Element AnonymousExpression comments domain Element AnonymousExpression examples domain Element AnonymousExpression in_subset domain Element AnonymousExpression from_schema domain Element AnonymousExpression imported_from domain Element AnonymousExpression source domain Element AnonymousExpression see_also domain Element AnonymousExpression aliases domain Element PathExpression description domain Element PathExpression alt_descriptions domain Element PathExpression title domain Element PathExpression deprecated domain Element PathExpression todos domain Element PathExpression notes domain Element PathExpression comments domain Element PathExpression examples domain Element PathExpression in_subset domain Element PathExpression from_schema domain Element PathExpression imported_from domain Element PathExpression source domain Element PathExpression see_also domain Element PathExpression aliases domain Element SlotExpression range range Element AnonymousSlotExpression range range Element AnonymousSlotExpression description domain Element AnonymousSlotExpression alt_descriptions domain Element AnonymousSlotExpression title domain Element AnonymousSlotExpression deprecated domain Element AnonymousSlotExpression todos domain Element AnonymousSlotExpression notes domain Element AnonymousSlotExpression comments domain Element AnonymousSlotExpression examples domain Element AnonymousSlotExpression in_subset domain Element AnonymousSlotExpression from_schema domain Element AnonymousSlotExpression imported_from domain Element AnonymousSlotExpression source domain Element AnonymousSlotExpression see_also domain Element AnonymousSlotExpression aliases domain Element SlotDefinition union_of domain Element SlotDefinition range range Element SlotDefinition created_by domain Element SlotDefinition created_on domain Element SlotDefinition last_updated_on domain Element SlotDefinition modified_by domain Element SlotDefinition status domain Element SlotDefinition name domain Element SlotDefinition id_prefixes domain Element SlotDefinition definition_uri domain Element SlotDefinition local_names domain Element SlotDefinition conforms_to domain Element SlotDefinition description domain Element SlotDefinition alt_descriptions domain Element SlotDefinition title domain Element SlotDefinition deprecated domain Element SlotDefinition todos domain Element SlotDefinition notes domain Element SlotDefinition comments domain Element SlotDefinition examples domain Element SlotDefinition in_subset domain Element SlotDefinition from_schema domain Element SlotDefinition imported_from domain Element SlotDefinition source domain Element SlotDefinition see_also domain Element SlotDefinition aliases domain Element AnonymousClassExpression description domain Element AnonymousClassExpression alt_descriptions domain Element AnonymousClassExpression title domain Element AnonymousClassExpression deprecated domain Element AnonymousClassExpression todos domain Element AnonymousClassExpression notes domain Element AnonymousClassExpression comments domain Element AnonymousClassExpression examples domain Element AnonymousClassExpression in_subset domain Element AnonymousClassExpression from_schema domain Element AnonymousClassExpression imported_from domain Element AnonymousClassExpression source domain Element AnonymousClassExpression see_also domain Element AnonymousClassExpression aliases domain Element ClassDefinition union_of domain Element ClassDefinition created_by domain Element ClassDefinition created_on domain Element ClassDefinition last_updated_on domain Element ClassDefinition modified_by domain Element ClassDefinition status domain Element ClassDefinition name domain Element ClassDefinition id_prefixes domain Element ClassDefinition definition_uri domain Element ClassDefinition local_names domain Element ClassDefinition conforms_to domain Element ClassDefinition description domain Element ClassDefinition alt_descriptions domain Element ClassDefinition title domain Element ClassDefinition deprecated domain Element ClassDefinition todos domain Element ClassDefinition notes domain Element ClassDefinition comments domain Element ClassDefinition examples domain Element ClassDefinition in_subset domain Element ClassDefinition from_schema domain Element ClassDefinition imported_from domain Element ClassDefinition source domain Element ClassDefinition see_also domain Element ClassDefinition aliases domain Element ClassRule description domain Element ClassRule alt_descriptions domain Element ClassRule title domain Element ClassRule deprecated domain Element ClassRule todos domain Element ClassRule notes domain Element ClassRule comments domain Element ClassRule examples domain Element ClassRule in_subset domain Element ClassRule from_schema domain Element ClassRule imported_from domain Element ClassRule source domain Element ClassRule see_also domain Element ClassRule aliases domain Element PatternExpression description domain Element PatternExpression alt_descriptions domain Element PatternExpression title domain Element PatternExpression deprecated domain Element PatternExpression todos domain Element PatternExpression notes domain Element PatternExpression comments domain Element PatternExpression examples domain Element PatternExpression in_subset domain Element PatternExpression from_schema domain Element PatternExpression imported_from domain Element PatternExpression source domain Element PatternExpression see_also domain Element PatternExpression aliases domain Element ImportExpression description domain Element ImportExpression alt_descriptions domain Element ImportExpression title domain Element ImportExpression deprecated domain Element ImportExpression todos domain Element ImportExpression notes domain Element ImportExpression comments domain Element ImportExpression examples domain Element ImportExpression in_subset domain Element ImportExpression from_schema domain Element ImportExpression imported_from domain Element ImportExpression source domain Element ImportExpression see_also domain Element ImportExpression aliases domain Element PermissibleValue description domain Element PermissibleValue alt_descriptions domain Element PermissibleValue title domain Element PermissibleValue deprecated domain Element PermissibleValue todos domain Element PermissibleValue notes domain Element PermissibleValue comments domain Element PermissibleValue examples domain Element PermissibleValue in_subset domain Element PermissibleValue from_schema domain Element PermissibleValue imported_from domain Element PermissibleValue source domain Element PermissibleValue see_also domain Element PermissibleValue aliases domain Element UniqueKey description domain Element UniqueKey alt_descriptions domain Element UniqueKey title domain Element UniqueKey deprecated domain Element UniqueKey todos domain Element UniqueKey notes domain Element UniqueKey comments domain Element UniqueKey examples domain Element UniqueKey in_subset domain Element UniqueKey from_schema domain Element UniqueKey imported_from domain Element UniqueKey source domain Element UniqueKey see_also domain Element UniqueKey aliases domain Element Aliases data element object See Also https://en.wikipedia.org/wiki/Data_element Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Element native linkml:Element LinkML Source Direct name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata slots: - name - id_prefixes - definition_uri - local_names - conforms_to Induced name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: element domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: element domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: element domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: element domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: element domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: element domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: element domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: element domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: element domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: element domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: element domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: element domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: element domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: element domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: element domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: element domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: element domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: element domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: element domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: element domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: element domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: element domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: element domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: element domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: element domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: element domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: element domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: element domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: element domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: element domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: element domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: element domain_of: - common_metadata - class_rule range: integer","title":"Class: Element"},{"location":"Element/#class-element","text":"a named element in the model NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Element classDiagram class Element Extensible <|-- Element Annotatable <|-- Element CommonMetadata <|-- Element Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos Element <|-- SchemaDefinition Element <|-- TypeDefinition Element <|-- SubsetDefinition Element <|-- Definition Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos","title":"Class: Element"},{"location":"Element/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition TypeDefinition [ TypeExpression ] SubsetDefinition Definition","title":"Inheritance"},{"location":"Element/#slots","text":"Name Cardinality and Range Description Inheritance name 1..1 NONE the unique name of the element within the context of the schema direct id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... direct definition_uri 0..1 Uriorcurie the \"native\" URI of the element direct local_names 0..* LocalName direct conforms_to 0..1 NONE An established standard to which the element conforms direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"Element/#usages","text":"used by used in type used CommonMetadata description domain Element CommonMetadata alt_descriptions domain Element CommonMetadata title domain Element CommonMetadata deprecated domain Element CommonMetadata todos domain Element CommonMetadata notes domain Element CommonMetadata comments domain Element CommonMetadata examples domain Element CommonMetadata in_subset domain Element CommonMetadata from_schema domain Element CommonMetadata imported_from domain Element CommonMetadata source domain Element CommonMetadata see_also domain Element CommonMetadata aliases domain Element Element name domain Element Element id_prefixes domain Element Element definition_uri domain Element Element local_names domain Element Element conforms_to domain Element Element description domain Element Element alt_descriptions domain Element Element title domain Element Element deprecated domain Element Element todos domain Element Element notes domain Element Element comments domain Element Element examples domain Element Element in_subset domain Element Element from_schema domain Element Element imported_from domain Element Element source domain Element Element see_also domain Element Element aliases domain Element SchemaDefinition keywords domain Element SchemaDefinition name domain Element SchemaDefinition id_prefixes domain Element SchemaDefinition definition_uri domain Element SchemaDefinition local_names domain Element SchemaDefinition conforms_to domain Element SchemaDefinition description domain Element SchemaDefinition alt_descriptions domain Element SchemaDefinition title domain Element SchemaDefinition deprecated domain Element SchemaDefinition todos domain Element SchemaDefinition notes domain Element SchemaDefinition comments domain Element SchemaDefinition examples domain Element SchemaDefinition in_subset domain Element SchemaDefinition from_schema domain Element SchemaDefinition imported_from domain Element SchemaDefinition source domain Element SchemaDefinition see_also domain Element SchemaDefinition aliases domain Element TypeDefinition union_of domain Element TypeDefinition name domain Element TypeDefinition id_prefixes domain Element TypeDefinition definition_uri domain Element TypeDefinition local_names domain Element TypeDefinition conforms_to domain Element TypeDefinition description domain Element TypeDefinition alt_descriptions domain Element TypeDefinition title domain Element TypeDefinition deprecated domain Element TypeDefinition todos domain Element TypeDefinition notes domain Element TypeDefinition comments domain Element TypeDefinition examples domain Element TypeDefinition in_subset domain Element TypeDefinition from_schema domain Element TypeDefinition imported_from domain Element TypeDefinition source domain Element TypeDefinition see_also domain Element TypeDefinition aliases domain Element SubsetDefinition name domain Element SubsetDefinition id_prefixes domain Element SubsetDefinition definition_uri domain Element SubsetDefinition local_names domain Element SubsetDefinition conforms_to domain Element SubsetDefinition description domain Element SubsetDefinition alt_descriptions domain Element SubsetDefinition title domain Element SubsetDefinition deprecated domain Element SubsetDefinition todos domain Element SubsetDefinition notes domain Element SubsetDefinition comments domain Element SubsetDefinition examples domain Element SubsetDefinition in_subset domain Element SubsetDefinition from_schema domain Element SubsetDefinition imported_from domain Element SubsetDefinition source domain Element SubsetDefinition see_also domain Element SubsetDefinition aliases domain Element Definition created_by domain Element Definition created_on domain Element Definition last_updated_on domain Element Definition modified_by domain Element Definition status domain Element Definition name domain Element Definition id_prefixes domain Element Definition definition_uri domain Element Definition local_names domain Element Definition conforms_to domain Element Definition description domain Element Definition alt_descriptions domain Element Definition title domain Element Definition deprecated domain Element Definition todos domain Element Definition notes domain Element Definition comments domain Element Definition examples domain Element Definition in_subset domain Element Definition from_schema domain Element Definition imported_from domain Element Definition source domain Element Definition see_also domain Element Definition aliases domain Element EnumDefinition created_by domain Element EnumDefinition created_on domain Element EnumDefinition last_updated_on domain Element EnumDefinition modified_by domain Element EnumDefinition status domain Element EnumDefinition name domain Element EnumDefinition id_prefixes domain Element EnumDefinition definition_uri domain Element EnumDefinition local_names domain Element EnumDefinition conforms_to domain Element EnumDefinition description domain Element EnumDefinition alt_descriptions domain Element EnumDefinition title domain Element EnumDefinition deprecated domain Element EnumDefinition todos domain Element EnumDefinition notes domain Element EnumDefinition comments domain Element EnumDefinition examples domain Element EnumDefinition in_subset domain Element EnumDefinition from_schema domain Element EnumDefinition imported_from domain Element EnumDefinition source domain Element EnumDefinition see_also domain Element EnumDefinition aliases domain Element StructuredAlias description domain Element StructuredAlias alt_descriptions domain Element StructuredAlias title domain Element StructuredAlias deprecated domain Element StructuredAlias todos domain Element StructuredAlias notes domain Element StructuredAlias comments domain Element StructuredAlias examples domain Element StructuredAlias in_subset domain Element StructuredAlias from_schema domain Element StructuredAlias imported_from domain Element StructuredAlias source domain Element StructuredAlias see_also domain Element StructuredAlias aliases domain Element AnonymousExpression description domain Element AnonymousExpression alt_descriptions domain Element AnonymousExpression title domain Element AnonymousExpression deprecated domain Element AnonymousExpression todos domain Element AnonymousExpression notes domain Element AnonymousExpression comments domain Element AnonymousExpression examples domain Element AnonymousExpression in_subset domain Element AnonymousExpression from_schema domain Element AnonymousExpression imported_from domain Element AnonymousExpression source domain Element AnonymousExpression see_also domain Element AnonymousExpression aliases domain Element PathExpression description domain Element PathExpression alt_descriptions domain Element PathExpression title domain Element PathExpression deprecated domain Element PathExpression todos domain Element PathExpression notes domain Element PathExpression comments domain Element PathExpression examples domain Element PathExpression in_subset domain Element PathExpression from_schema domain Element PathExpression imported_from domain Element PathExpression source domain Element PathExpression see_also domain Element PathExpression aliases domain Element SlotExpression range range Element AnonymousSlotExpression range range Element AnonymousSlotExpression description domain Element AnonymousSlotExpression alt_descriptions domain Element AnonymousSlotExpression title domain Element AnonymousSlotExpression deprecated domain Element AnonymousSlotExpression todos domain Element AnonymousSlotExpression notes domain Element AnonymousSlotExpression comments domain Element AnonymousSlotExpression examples domain Element AnonymousSlotExpression in_subset domain Element AnonymousSlotExpression from_schema domain Element AnonymousSlotExpression imported_from domain Element AnonymousSlotExpression source domain Element AnonymousSlotExpression see_also domain Element AnonymousSlotExpression aliases domain Element SlotDefinition union_of domain Element SlotDefinition range range Element SlotDefinition created_by domain Element SlotDefinition created_on domain Element SlotDefinition last_updated_on domain Element SlotDefinition modified_by domain Element SlotDefinition status domain Element SlotDefinition name domain Element SlotDefinition id_prefixes domain Element SlotDefinition definition_uri domain Element SlotDefinition local_names domain Element SlotDefinition conforms_to domain Element SlotDefinition description domain Element SlotDefinition alt_descriptions domain Element SlotDefinition title domain Element SlotDefinition deprecated domain Element SlotDefinition todos domain Element SlotDefinition notes domain Element SlotDefinition comments domain Element SlotDefinition examples domain Element SlotDefinition in_subset domain Element SlotDefinition from_schema domain Element SlotDefinition imported_from domain Element SlotDefinition source domain Element SlotDefinition see_also domain Element SlotDefinition aliases domain Element AnonymousClassExpression description domain Element AnonymousClassExpression alt_descriptions domain Element AnonymousClassExpression title domain Element AnonymousClassExpression deprecated domain Element AnonymousClassExpression todos domain Element AnonymousClassExpression notes domain Element AnonymousClassExpression comments domain Element AnonymousClassExpression examples domain Element AnonymousClassExpression in_subset domain Element AnonymousClassExpression from_schema domain Element AnonymousClassExpression imported_from domain Element AnonymousClassExpression source domain Element AnonymousClassExpression see_also domain Element AnonymousClassExpression aliases domain Element ClassDefinition union_of domain Element ClassDefinition created_by domain Element ClassDefinition created_on domain Element ClassDefinition last_updated_on domain Element ClassDefinition modified_by domain Element ClassDefinition status domain Element ClassDefinition name domain Element ClassDefinition id_prefixes domain Element ClassDefinition definition_uri domain Element ClassDefinition local_names domain Element ClassDefinition conforms_to domain Element ClassDefinition description domain Element ClassDefinition alt_descriptions domain Element ClassDefinition title domain Element ClassDefinition deprecated domain Element ClassDefinition todos domain Element ClassDefinition notes domain Element ClassDefinition comments domain Element ClassDefinition examples domain Element ClassDefinition in_subset domain Element ClassDefinition from_schema domain Element ClassDefinition imported_from domain Element ClassDefinition source domain Element ClassDefinition see_also domain Element ClassDefinition aliases domain Element ClassRule description domain Element ClassRule alt_descriptions domain Element ClassRule title domain Element ClassRule deprecated domain Element ClassRule todos domain Element ClassRule notes domain Element ClassRule comments domain Element ClassRule examples domain Element ClassRule in_subset domain Element ClassRule from_schema domain Element ClassRule imported_from domain Element ClassRule source domain Element ClassRule see_also domain Element ClassRule aliases domain Element PatternExpression description domain Element PatternExpression alt_descriptions domain Element PatternExpression title domain Element PatternExpression deprecated domain Element PatternExpression todos domain Element PatternExpression notes domain Element PatternExpression comments domain Element PatternExpression examples domain Element PatternExpression in_subset domain Element PatternExpression from_schema domain Element PatternExpression imported_from domain Element PatternExpression source domain Element PatternExpression see_also domain Element PatternExpression aliases domain Element ImportExpression description domain Element ImportExpression alt_descriptions domain Element ImportExpression title domain Element ImportExpression deprecated domain Element ImportExpression todos domain Element ImportExpression notes domain Element ImportExpression comments domain Element ImportExpression examples domain Element ImportExpression in_subset domain Element ImportExpression from_schema domain Element ImportExpression imported_from domain Element ImportExpression source domain Element ImportExpression see_also domain Element ImportExpression aliases domain Element PermissibleValue description domain Element PermissibleValue alt_descriptions domain Element PermissibleValue title domain Element PermissibleValue deprecated domain Element PermissibleValue todos domain Element PermissibleValue notes domain Element PermissibleValue comments domain Element PermissibleValue examples domain Element PermissibleValue in_subset domain Element PermissibleValue from_schema domain Element PermissibleValue imported_from domain Element PermissibleValue source domain Element PermissibleValue see_also domain Element PermissibleValue aliases domain Element UniqueKey description domain Element UniqueKey alt_descriptions domain Element UniqueKey title domain Element UniqueKey deprecated domain Element UniqueKey todos domain Element UniqueKey notes domain Element UniqueKey comments domain Element UniqueKey examples domain Element UniqueKey in_subset domain Element UniqueKey from_schema domain Element UniqueKey imported_from domain Element UniqueKey source domain Element UniqueKey see_also domain Element UniqueKey aliases domain Element","title":"Usages"},{"location":"Element/#aliases","text":"data element object","title":"Aliases"},{"location":"Element/#see-also","text":"https://en.wikipedia.org/wiki/Data_element","title":"See Also"},{"location":"Element/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Element/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Element/#mappings","text":"Mapping Type Mapped Value self linkml:Element native linkml:Element","title":"Mappings"},{"location":"Element/#linkml-source","text":"","title":"LinkML Source"},{"location":"Element/#direct","text":"name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata slots: - name - id_prefixes - definition_uri - local_names - conforms_to","title":"Direct"},{"location":"Element/#induced","text":"name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: element domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: element domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: element domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: element domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: element domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: element domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: element domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: element domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: element domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: element domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: element domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: element domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: element domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: element domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: element domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: element domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: element domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: element domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: element domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: element domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: element domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: element domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: element domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: element domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: element domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: element domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: element domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: element domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: element domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: element domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: element domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: element domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"EnumDefinition/","text":"Class: EnumDefinition an element whose instances must be drawn from a specified set of permissible values URI: linkml:EnumDefinition classDiagram class EnumDefinition EnumExpression <|-- EnumDefinition Definition <|-- EnumDefinition EnumDefinition : abstract EnumDefinition : aliases EnumDefinition : alt_descriptions EnumDefinition : annotations EnumDefinition : apply_to EnumDefinition : broad_mappings EnumDefinition : close_mappings EnumDefinition : code_set EnumDefinition : code_set_tag EnumDefinition : code_set_version EnumDefinition : comments EnumDefinition : concepts EnumDefinition : conforms_to EnumDefinition : created_by EnumDefinition : created_on EnumDefinition : definition_uri EnumDefinition : deprecated EnumDefinition : deprecated_element_has_exact_replacement EnumDefinition : deprecated_element_has_possible_replacement EnumDefinition : description EnumDefinition : enum_uri EnumDefinition : exact_mappings EnumDefinition : examples EnumDefinition : extensions EnumDefinition : from_schema EnumDefinition : id_prefixes EnumDefinition : imported_from EnumDefinition : in_language EnumDefinition : in_subset EnumDefinition : include EnumDefinition : inherits EnumDefinition : is_a EnumDefinition : last_updated_on EnumDefinition : local_names EnumDefinition : mappings EnumDefinition : matches EnumDefinition : minus EnumDefinition : mixin EnumDefinition : mixins EnumDefinition : modified_by EnumDefinition : name EnumDefinition : narrow_mappings EnumDefinition : notes EnumDefinition : permissible_values EnumDefinition : pv_formula EnumDefinition : rank EnumDefinition : reachable_from EnumDefinition : related_mappings EnumDefinition : see_also EnumDefinition : source EnumDefinition : status EnumDefinition : string_serialization EnumDefinition : structured_aliases EnumDefinition : title EnumDefinition : todos EnumDefinition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ] Slots Name Cardinality and Range Description Inheritance enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... direct code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition in_language 0..1 String CommonMetadata status 0..1 Uriorcurie status of the element Definition alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression title 0..1 NONE the official title of the element CommonMetadata last_updated_on 0..1 Datetime time at which the element was last updated Definition definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata modified_by 0..1 Uriorcurie agent that modified the element Definition in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition created_on 0..1 Datetime time at which the element was created Definition broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression from_schema 0..1 Uri id of the schema that defined the element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition conforms_to 0..1 NONE An established standard to which the element conforms Element permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression name 1..1 NONE the unique name of the element within the context of the schema Element created_by 0..1 Uriorcurie agent that created the element Definition is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used SchemaDefinition enums range EnumDefinition EnumExpression inherits range EnumDefinition AnonymousEnumExpression inherits range EnumDefinition EnumDefinition enum_uri domain EnumDefinition EnumDefinition inherits range EnumDefinition Aliases enum value set term set Terminology Value Set Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:EnumDefinition native linkml:EnumDefinition exact qb:HierarchicalCodeList, NCIT:C113497 close skos:ConceptScheme LinkML Source Direct name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression slots: - enum_uri Induced name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression attributes: enum_uri: name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri owner: enum_definition domain_of: - enum_definition range: uriorcurie code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_definition domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_definition domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_definition domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_definition domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_definition domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_definition domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_definition domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_definition domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_definition domain_of: - enum_expression range: uriorcurie is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: enum_definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: enum_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: enum_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: enum_definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: enum_definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: enum_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: enum_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: enum_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: enum_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: enum_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: enum_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: enum_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: enum_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: enum_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: enum_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: enum_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: enum_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: enum_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: enum_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: enum_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: enum_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: enum_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: enum_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: enum_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: enum_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: enum_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: enum_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: enum_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: enum_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: enum_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: enum_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: enum_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: enum_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: enum_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: enum_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: enum_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: EnumDefinition"},{"location":"EnumDefinition/#class-enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values URI: linkml:EnumDefinition classDiagram class EnumDefinition EnumExpression <|-- EnumDefinition Definition <|-- EnumDefinition EnumDefinition : abstract EnumDefinition : aliases EnumDefinition : alt_descriptions EnumDefinition : annotations EnumDefinition : apply_to EnumDefinition : broad_mappings EnumDefinition : close_mappings EnumDefinition : code_set EnumDefinition : code_set_tag EnumDefinition : code_set_version EnumDefinition : comments EnumDefinition : concepts EnumDefinition : conforms_to EnumDefinition : created_by EnumDefinition : created_on EnumDefinition : definition_uri EnumDefinition : deprecated EnumDefinition : deprecated_element_has_exact_replacement EnumDefinition : deprecated_element_has_possible_replacement EnumDefinition : description EnumDefinition : enum_uri EnumDefinition : exact_mappings EnumDefinition : examples EnumDefinition : extensions EnumDefinition : from_schema EnumDefinition : id_prefixes EnumDefinition : imported_from EnumDefinition : in_language EnumDefinition : in_subset EnumDefinition : include EnumDefinition : inherits EnumDefinition : is_a EnumDefinition : last_updated_on EnumDefinition : local_names EnumDefinition : mappings EnumDefinition : matches EnumDefinition : minus EnumDefinition : mixin EnumDefinition : mixins EnumDefinition : modified_by EnumDefinition : name EnumDefinition : narrow_mappings EnumDefinition : notes EnumDefinition : permissible_values EnumDefinition : pv_formula EnumDefinition : rank EnumDefinition : reachable_from EnumDefinition : related_mappings EnumDefinition : see_also EnumDefinition : source EnumDefinition : status EnumDefinition : string_serialization EnumDefinition : structured_aliases EnumDefinition : title EnumDefinition : todos EnumDefinition : values_from","title":"Class: EnumDefinition"},{"location":"EnumDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ]","title":"Inheritance"},{"location":"EnumDefinition/#slots","text":"Name Cardinality and Range Description Inheritance enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... direct code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition in_language 0..1 String CommonMetadata status 0..1 Uriorcurie status of the element Definition alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression title 0..1 NONE the official title of the element CommonMetadata last_updated_on 0..1 Datetime time at which the element was last updated Definition definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata modified_by 0..1 Uriorcurie agent that modified the element Definition in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition created_on 0..1 Datetime time at which the element was created Definition broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression from_schema 0..1 Uri id of the schema that defined the element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition conforms_to 0..1 NONE An established standard to which the element conforms Element permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression name 1..1 NONE the unique name of the element within the context of the schema Element created_by 0..1 Uriorcurie agent that created the element Definition is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"EnumDefinition/#usages","text":"used by used in type used SchemaDefinition enums range EnumDefinition EnumExpression inherits range EnumDefinition AnonymousEnumExpression inherits range EnumDefinition EnumDefinition enum_uri domain EnumDefinition EnumDefinition inherits range EnumDefinition","title":"Usages"},{"location":"EnumDefinition/#aliases","text":"enum value set term set Terminology Value Set","title":"Aliases"},{"location":"EnumDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"EnumDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:EnumDefinition native linkml:EnumDefinition exact qb:HierarchicalCodeList, NCIT:C113497 close skos:ConceptScheme","title":"Mappings"},{"location":"EnumDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"EnumDefinition/#direct","text":"name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression slots: - enum_uri","title":"Direct"},{"location":"EnumDefinition/#induced","text":"name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression attributes: enum_uri: name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri owner: enum_definition domain_of: - enum_definition range: uriorcurie code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_definition domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_definition domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_definition domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_definition domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_definition domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_definition domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_definition domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_definition domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_definition domain_of: - enum_expression range: uriorcurie is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: enum_definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: enum_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: enum_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: enum_definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: enum_definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: enum_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: enum_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: enum_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: enum_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: enum_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: enum_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: enum_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: enum_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: enum_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: enum_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: enum_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: enum_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: enum_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: enum_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: enum_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: enum_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: enum_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: enum_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: enum_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: enum_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: enum_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: enum_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: enum_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: enum_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: enum_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: enum_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: enum_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: enum_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: enum_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: enum_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: enum_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"EnumExpression/","text":"Class: EnumExpression An expression that constrains the range of a slot URI: linkml:EnumExpression classDiagram class EnumExpression Expression <|-- EnumExpression EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from EnumExpression <|-- AnonymousEnumExpression EnumExpression <|-- EnumDefinition EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from Inheritance Expression EnumExpression Slots Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set direct code_set_tag 0..1 String the version tag of the enumeration code set direct code_set_version 0..1 String the version identifier of the enumeration code set direct pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values direct permissible_values 0..* PermissibleValue A list of possible values for a slot range direct include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... direct minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... direct inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum direct reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... direct matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... direct concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values direct Usages used by used in type used EnumExpression code_set domain EnumExpression EnumExpression code_set_tag domain EnumExpression EnumExpression code_set_version domain EnumExpression EnumExpression pv_formula domain EnumExpression EnumExpression permissible_values domain EnumExpression EnumExpression include domain EnumExpression EnumExpression minus domain EnumExpression EnumExpression inherits domain EnumExpression EnumExpression reachable_from domain EnumExpression EnumExpression matches domain EnumExpression EnumExpression concepts domain EnumExpression AnonymousEnumExpression code_set domain EnumExpression AnonymousEnumExpression code_set_tag domain EnumExpression AnonymousEnumExpression code_set_version domain EnumExpression AnonymousEnumExpression pv_formula domain EnumExpression AnonymousEnumExpression permissible_values domain EnumExpression AnonymousEnumExpression include domain EnumExpression AnonymousEnumExpression minus domain EnumExpression AnonymousEnumExpression inherits domain EnumExpression AnonymousEnumExpression reachable_from domain EnumExpression AnonymousEnumExpression matches domain EnumExpression AnonymousEnumExpression concepts domain EnumExpression EnumDefinition code_set domain EnumExpression EnumDefinition code_set_tag domain EnumExpression EnumDefinition code_set_version domain EnumExpression EnumDefinition pv_formula domain EnumExpression EnumDefinition permissible_values domain EnumExpression EnumDefinition include domain EnumExpression EnumDefinition minus domain EnumExpression EnumDefinition inherits domain EnumExpression EnumDefinition reachable_from domain EnumExpression EnumDefinition matches domain EnumExpression EnumDefinition concepts domain EnumExpression SlotExpression enum_range range EnumExpression AnonymousSlotExpression enum_range range EnumExpression SlotDefinition enum_range range EnumExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:EnumExpression native linkml:EnumExpression LinkML Source Direct name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression slots: - code_set - code_set_tag - code_set_version - pv_formula - permissible_values - include - minus - inherits - reachable_from - matches - concepts Induced name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_expression domain_of: - enum_expression range: uriorcurie","title":"Class: EnumExpression"},{"location":"EnumExpression/#class-enumexpression","text":"An expression that constrains the range of a slot URI: linkml:EnumExpression classDiagram class EnumExpression Expression <|-- EnumExpression EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from EnumExpression <|-- AnonymousEnumExpression EnumExpression <|-- EnumDefinition EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from","title":"Class: EnumExpression"},{"location":"EnumExpression/#inheritance","text":"Expression EnumExpression","title":"Inheritance"},{"location":"EnumExpression/#slots","text":"Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set direct code_set_tag 0..1 String the version tag of the enumeration code set direct code_set_version 0..1 String the version identifier of the enumeration code set direct pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values direct permissible_values 0..* PermissibleValue A list of possible values for a slot range direct include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... direct minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... direct inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum direct reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... direct matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... direct concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values direct","title":"Slots"},{"location":"EnumExpression/#usages","text":"used by used in type used EnumExpression code_set domain EnumExpression EnumExpression code_set_tag domain EnumExpression EnumExpression code_set_version domain EnumExpression EnumExpression pv_formula domain EnumExpression EnumExpression permissible_values domain EnumExpression EnumExpression include domain EnumExpression EnumExpression minus domain EnumExpression EnumExpression inherits domain EnumExpression EnumExpression reachable_from domain EnumExpression EnumExpression matches domain EnumExpression EnumExpression concepts domain EnumExpression AnonymousEnumExpression code_set domain EnumExpression AnonymousEnumExpression code_set_tag domain EnumExpression AnonymousEnumExpression code_set_version domain EnumExpression AnonymousEnumExpression pv_formula domain EnumExpression AnonymousEnumExpression permissible_values domain EnumExpression AnonymousEnumExpression include domain EnumExpression AnonymousEnumExpression minus domain EnumExpression AnonymousEnumExpression inherits domain EnumExpression AnonymousEnumExpression reachable_from domain EnumExpression AnonymousEnumExpression matches domain EnumExpression AnonymousEnumExpression concepts domain EnumExpression EnumDefinition code_set domain EnumExpression EnumDefinition code_set_tag domain EnumExpression EnumDefinition code_set_version domain EnumExpression EnumDefinition pv_formula domain EnumExpression EnumDefinition permissible_values domain EnumExpression EnumDefinition include domain EnumExpression EnumDefinition minus domain EnumExpression EnumDefinition inherits domain EnumExpression EnumDefinition reachable_from domain EnumExpression EnumDefinition matches domain EnumExpression EnumDefinition concepts domain EnumExpression SlotExpression enum_range range EnumExpression AnonymousSlotExpression enum_range range EnumExpression SlotDefinition enum_range range EnumExpression","title":"Usages"},{"location":"EnumExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"EnumExpression/#mappings","text":"Mapping Type Mapped Value self linkml:EnumExpression native linkml:EnumExpression","title":"Mappings"},{"location":"EnumExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"EnumExpression/#direct","text":"name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression slots: - code_set - code_set_tag - code_set_version - pv_formula - permissible_values - include - minus - inherits - reachable_from - matches - concepts","title":"Direct"},{"location":"EnumExpression/#induced","text":"name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_expression domain_of: - 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BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - value - value_description","title":"Direct"},{"location":"Example/#induced","text":"name: example description: usage example and description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: value: name: value description: example value in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example slot_uri: skos:example alias: value owner: example domain_of: - example range: string value_description: name: value_description description: description of what the value is doing in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example alias: description owner: example domain_of: - example range: string","title":"Induced"},{"location":"Expression/","text":"Class: Expression general mixin for any class that can represent some form of expression NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Expression classDiagram class Expression Expression <|-- TypeExpression Expression <|-- EnumExpression Expression <|-- StructuredAlias Expression <|-- AnonymousExpression Expression <|-- PathExpression Expression <|-- SlotExpression Inheritance Expression TypeExpression EnumExpression SlotExpression Slots Name Cardinality and Range Description Inheritance Mixin Usage mixed into description StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... 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extensions","title":"Direct"},{"location":"Extensible/#induced","text":"name: extensible description: mixin for classes that support extension from_schema: https://w3id.org/linkml/extensions rank: 1000 mixin: true attributes: extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: extensible domain_of: - extension - extensible range: extension inlined: true","title":"Induced"},{"location":"Extension/","text":"Class: Extension a tag/value pair used to add non-model information to an entry URI: linkml:Extension classDiagram class Extension Extension <|-- Annotation Extension : extension_tag Extension : extension_value Extension : extensions Inheritance Extension Annotation [ Annotatable ] Slots Name Cardinality and Range Description Inheritance extension_tag 1..1 Uriorcurie a tag associated with an extension direct extension_value 1..1 NONE the actual annotation direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element direct Usages used by used in type used Element extensions range Extension SchemaDefinition extensions range Extension TypeDefinition extensions range Extension SubsetDefinition extensions range Extension Definition extensions range Extension EnumDefinition extensions range Extension StructuredAlias extensions range Extension AnonymousExpression extensions range Extension PathExpression extensions range Extension AnonymousSlotExpression extensions range Extension SlotDefinition extensions range Extension AnonymousClassExpression extensions range Extension ClassDefinition extensions range Extension ClassRule extensions range Extension PatternExpression extensions range Extension ImportExpression extensions range Extension PermissibleValue extensions range Extension UniqueKey extensions range Extension Annotation extension_tag domain Extension Annotation extension_value domain Extension Annotation extensions range Extension Extension extension_tag domain Extension Extension extension_value domain Extension Extension extensions range Extension Extensible extensions range Extension Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions Mappings Mapping Type Mapped Value self linkml:Extension native linkml:Extension LinkML Source Direct name: extension description: a tag/value pair used to add non-model information to an entry from_schema: https://w3id.org/linkml/extensions rank: 1000 slots: - 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extension_tag - extension_value - extensions","title":"Direct"},{"location":"Extension/#induced","text":"name: extension description: a tag/value pair used to add non-model information to an entry from_schema: https://w3id.org/linkml/extensions rank: 1000 attributes: extension_tag: name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag owner: extension domain_of: - extension range: uriorcurie required: true extension_value: name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value owner: extension domain_of: - extension range: string required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: extension domain_of: - extension - extensible range: extension inlined: true","title":"Induced"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"ImportExpression/","text":"Class: ImportExpression an expression describing an import URI: linkml:ImportExpression classDiagram class ImportExpression Extensible <|-- ImportExpression Annotatable <|-- ImportExpression CommonMetadata <|-- ImportExpression ImportExpression : aliases ImportExpression : alt_descriptions ImportExpression : annotations ImportExpression : broad_mappings ImportExpression : close_mappings ImportExpression : comments ImportExpression : deprecated ImportExpression : deprecated_element_has_exact_replacement ImportExpression : deprecated_element_has_possible_replacement ImportExpression : description ImportExpression : exact_mappings ImportExpression : examples ImportExpression : extensions ImportExpression : from_schema ImportExpression : import_as ImportExpression : import_from ImportExpression : import_map ImportExpression : imported_from ImportExpression : in_language ImportExpression : in_subset ImportExpression : mappings ImportExpression : narrow_mappings ImportExpression : notes ImportExpression : rank ImportExpression : related_mappings ImportExpression : see_also ImportExpression : source ImportExpression : structured_aliases ImportExpression : title ImportExpression : todos Inheritance ImportExpression [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance import_from 1..1 Uriorcurie direct import_as 0..1 Ncname direct import_map 0..* Setting direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used ImportExpression import_from domain ImportExpression ImportExpression import_as domain ImportExpression ImportExpression import_map domain ImportExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ImportExpression native linkml:ImportExpression LinkML Source Direct name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing slots: - import_from - import_as - import_map Induced name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing attributes: import_from: name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from owner: import_expression domain_of: - import_expression range: uriorcurie required: true import_as: name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as owner: import_expression domain_of: - import_expression range: ncname import_map: name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map owner: import_expression domain_of: - import_expression range: setting inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: import_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: import_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: import_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: import_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: import_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: import_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: import_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: import_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: import_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: import_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: import_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: import_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: import_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: import_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: import_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: import_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: import_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: import_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: import_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: import_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: ImportExpression"},{"location":"ImportExpression/#class-importexpression","text":"an expression describing an import URI: linkml:ImportExpression classDiagram class ImportExpression Extensible <|-- ImportExpression Annotatable <|-- ImportExpression CommonMetadata <|-- ImportExpression ImportExpression : aliases ImportExpression : alt_descriptions ImportExpression : annotations ImportExpression : broad_mappings ImportExpression : close_mappings ImportExpression : comments ImportExpression : deprecated ImportExpression : deprecated_element_has_exact_replacement ImportExpression : deprecated_element_has_possible_replacement ImportExpression : description ImportExpression : exact_mappings ImportExpression : examples ImportExpression : extensions ImportExpression : from_schema ImportExpression : import_as ImportExpression : import_from ImportExpression : import_map ImportExpression : imported_from ImportExpression : in_language ImportExpression : in_subset ImportExpression : mappings ImportExpression : narrow_mappings ImportExpression : notes ImportExpression : rank ImportExpression : related_mappings ImportExpression : see_also ImportExpression : source ImportExpression : structured_aliases ImportExpression : title ImportExpression : todos","title":"Class: ImportExpression"},{"location":"ImportExpression/#inheritance","text":"ImportExpression [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"ImportExpression/#slots","text":"Name Cardinality and Range Description Inheritance import_from 1..1 Uriorcurie direct import_as 0..1 Ncname direct import_map 0..* Setting direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"ImportExpression/#usages","text":"used by used in type used ImportExpression import_from domain ImportExpression ImportExpression import_as domain ImportExpression ImportExpression import_map domain ImportExpression","title":"Usages"},{"location":"ImportExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ImportExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ImportExpression/#mappings","text":"Mapping Type Mapped Value self linkml:ImportExpression native linkml:ImportExpression","title":"Mappings"},{"location":"ImportExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"ImportExpression/#direct","text":"name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing slots: - import_from - import_as - import_map","title":"Direct"},{"location":"ImportExpression/#induced","text":"name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing attributes: import_from: name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from owner: import_expression domain_of: - import_expression range: uriorcurie required: true import_as: name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as owner: import_expression domain_of: - import_expression range: ncname import_map: name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map owner: import_expression domain_of: - import_expression range: setting inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: import_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: import_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: import_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: import_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: import_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: import_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: import_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: import_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: import_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: import_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: import_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: import_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: import_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: import_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: import_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: import_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: import_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: import_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: import_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: import_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Integer/","text":"Type: Integer An integer URI: xsd:integer base : int uri : xsd:integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Integer"},{"location":"Integer/#type-integer","text":"An integer URI: xsd:integer base : int uri : xsd:integer","title":"Type: Integer"},{"location":"Integer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Integer/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"LocalName/","text":"Class: LocalName an attributed label URI: linkml:LocalName classDiagram class LocalName LocalName : local_name_source LocalName : local_name_value Slots Name Cardinality and Range Description Inheritance local_name_source 0..1 Ncname the ncname of the source of the name direct local_name_value 1..1 String a name assigned to an element in a given ontology direct Usages used by used in type used Element local_names range LocalName SchemaDefinition local_names range LocalName TypeDefinition local_names range LocalName SubsetDefinition local_names range LocalName Definition local_names range LocalName EnumDefinition local_names range LocalName SlotDefinition local_names range LocalName ClassDefinition local_names range LocalName LocalName local_name_source domain LocalName LocalName local_name_value domain LocalName Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:LocalName native linkml:LocalName LinkML Source Direct name: local_name description: an attributed label from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - local_name_source - local_name_value Induced name: local_name description: an attributed label from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: local_name_source: name: local_name_source description: the ncname of the source of the name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name key: true alias: local_name_source owner: local_name domain_of: - local_name range: ncname local_name_value: name: local_name_value description: a name assigned to an element in a given ontology from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name slot_uri: skos:altLabel alias: local_name_value owner: local_name domain_of: - local_name range: string required: true","title":"Class: LocalName"},{"location":"LocalName/#class-localname","text":"an attributed label URI: linkml:LocalName classDiagram class LocalName LocalName : local_name_source LocalName : local_name_value","title":"Class: LocalName"},{"location":"LocalName/#slots","text":"Name Cardinality and Range Description Inheritance local_name_source 0..1 Ncname the ncname of the source of the name direct local_name_value 1..1 String a name assigned to an element in a given ontology direct","title":"Slots"},{"location":"LocalName/#usages","text":"used by used in type used Element local_names range LocalName SchemaDefinition local_names range LocalName TypeDefinition local_names range LocalName SubsetDefinition local_names range LocalName Definition local_names range LocalName EnumDefinition local_names range LocalName SlotDefinition local_names range LocalName ClassDefinition local_names range LocalName LocalName local_name_source domain LocalName LocalName local_name_value domain LocalName","title":"Usages"},{"location":"LocalName/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"LocalName/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"LocalName/#mappings","text":"Mapping Type Mapped Value self linkml:LocalName native linkml:LocalName","title":"Mappings"},{"location":"LocalName/#linkml-source","text":"","title":"LinkML Source"},{"location":"LocalName/#direct","text":"name: local_name description: an attributed label from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - 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classes or slots from which inheritable meta...","title":"EnumDefinition"},{"location":"OwlProfile/#slots-in-subset","text":"Slot Description id The official schema URI name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema enums An index to the collection of all enum definitions in the schema types An index to the collection of all type definitions in the schema is_a A primary parent class or slot from which inheritable metaslots are propagate... mixins A collection of secondary parent classes or slots from which inheritable meta... imports other schemas that are included in this schema attributes Inline definition of slots union_of indicates that the domain element consists exactly of the members of the elem...","title":"Slots in subset"},{"location":"OwlProfile/#enumerations-in-subset","text":"Enumeration Description","title":"Enumerations in subset"},{"location":"PathExpression/","text":"Class: PathExpression An expression that describes an abstract path from an object to another through a sequence of slot lookups URI: linkml:PathExpression classDiagram class PathExpression Expression <|-- PathExpression Extensible <|-- PathExpression Annotatable <|-- PathExpression CommonMetadata <|-- PathExpression PathExpression : aliases PathExpression : all_of PathExpression : alt_descriptions PathExpression : annotations PathExpression : any_of PathExpression : broad_mappings PathExpression : close_mappings PathExpression : comments PathExpression : deprecated PathExpression : deprecated_element_has_exact_replacement PathExpression : deprecated_element_has_possible_replacement PathExpression : description PathExpression : exact_mappings PathExpression : exactly_one_of PathExpression : examples PathExpression : extensions PathExpression : followed_by PathExpression : from_schema PathExpression : imported_from PathExpression : in_language PathExpression : in_subset PathExpression : mappings PathExpression : narrow_mappings PathExpression : none_of PathExpression : notes PathExpression : range_expression PathExpression : rank PathExpression : related_mappings PathExpression : reversed PathExpression : see_also PathExpression : source PathExpression : structured_aliases PathExpression : title PathExpression : todos PathExpression : traverse Inheritance PathExpression [ Expression Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance followed_by 0..1 Expression in a sequential list, this indicates the next member direct none_of 0..1 Expression holds if none of the expressions hold direct any_of 0..1 Expression holds if at least one of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct reversed 0..1 Boolean true if the slot is to be inversed direct traverse 0..1 SlotDefinition the slot to traverse direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used PathExpression followed_by range PathExpression PathExpression none_of range PathExpression PathExpression any_of range PathExpression PathExpression all_of range PathExpression PathExpression exactly_one_of range PathExpression SlotDefinition path_rule range PathExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:PathExpression native linkml:PathExpression LinkML Source Direct name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slots: - followed_by - none_of - any_of - all_of - exactly_one_of - reversed - traverse - range_expression slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression Induced name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression attributes: followed_by: name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by owner: path_expression domain_of: - path_expression - path_expression range: path_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression reversed: name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed owner: path_expression domain_of: - path_expression range: boolean traverse: name: traverse description: the slot to traverse from_schema: https://w3id.org/linkml/meta rank: 1000 alias: traverse owner: path_expression domain_of: - path_expression range: slot_definition range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: path_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: path_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: path_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: path_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: path_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: path_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: path_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: path_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: path_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: path_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: path_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: path_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: path_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: path_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: path_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: path_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: path_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: path_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: path_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: path_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: path_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: PathExpression"},{"location":"PathExpression/#class-pathexpression","text":"An expression that describes an abstract path from an object to another through a sequence of slot lookups URI: linkml:PathExpression classDiagram class PathExpression Expression <|-- PathExpression Extensible <|-- PathExpression Annotatable <|-- PathExpression CommonMetadata <|-- PathExpression PathExpression : aliases PathExpression : all_of PathExpression : alt_descriptions PathExpression : annotations PathExpression : any_of PathExpression : broad_mappings PathExpression : close_mappings PathExpression : comments PathExpression : deprecated PathExpression : deprecated_element_has_exact_replacement PathExpression : deprecated_element_has_possible_replacement PathExpression : description PathExpression : exact_mappings PathExpression : exactly_one_of PathExpression : examples PathExpression : extensions PathExpression : followed_by PathExpression : from_schema PathExpression : imported_from PathExpression : in_language PathExpression : in_subset PathExpression : mappings PathExpression : narrow_mappings PathExpression : none_of PathExpression : notes PathExpression : range_expression PathExpression : rank PathExpression : related_mappings PathExpression : reversed PathExpression : see_also PathExpression : source PathExpression : structured_aliases PathExpression : title PathExpression : todos PathExpression : traverse","title":"Class: PathExpression"},{"location":"PathExpression/#inheritance","text":"PathExpression [ Expression Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"PathExpression/#slots","text":"Name Cardinality and Range Description Inheritance followed_by 0..1 Expression in a sequential list, this indicates the next member direct none_of 0..1 Expression holds if none of the expressions hold direct any_of 0..1 Expression holds if at least one of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct reversed 0..1 Boolean true if the slot is to be inversed direct traverse 0..1 SlotDefinition the slot to traverse direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"PathExpression/#usages","text":"used by used in type used PathExpression followed_by range PathExpression PathExpression none_of range PathExpression PathExpression any_of range PathExpression PathExpression all_of range PathExpression PathExpression exactly_one_of range PathExpression SlotDefinition path_rule range PathExpression","title":"Usages"},{"location":"PathExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PathExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PathExpression/#mappings","text":"Mapping Type Mapped Value self linkml:PathExpression native linkml:PathExpression","title":"Mappings"},{"location":"PathExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"PathExpression/#direct","text":"name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slots: - followed_by - none_of - any_of - all_of - exactly_one_of - reversed - traverse - range_expression slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression","title":"Direct"},{"location":"PathExpression/#induced","text":"name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression attributes: followed_by: name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by owner: path_expression domain_of: - path_expression - path_expression range: path_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression reversed: name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed owner: path_expression domain_of: - path_expression range: boolean traverse: name: traverse description: the slot to traverse from_schema: https://w3id.org/linkml/meta rank: 1000 alias: traverse owner: path_expression domain_of: - path_expression range: slot_definition range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: path_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: path_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: path_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: path_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: path_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: path_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: path_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: path_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: path_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: path_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: path_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: path_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: path_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: path_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: path_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: path_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: path_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: path_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: path_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: path_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: path_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"PatternExpression/","text":"Class: PatternExpression a regular expression pattern used to evaluate conformance of a string URI: linkml:PatternExpression classDiagram class PatternExpression Extensible <|-- PatternExpression Annotatable <|-- PatternExpression CommonMetadata <|-- PatternExpression PatternExpression : aliases PatternExpression : alt_descriptions PatternExpression : annotations PatternExpression : broad_mappings PatternExpression : close_mappings PatternExpression : comments PatternExpression : deprecated PatternExpression : deprecated_element_has_exact_replacement PatternExpression : deprecated_element_has_possible_replacement PatternExpression : description PatternExpression : exact_mappings PatternExpression : examples PatternExpression : extensions PatternExpression : from_schema PatternExpression : imported_from PatternExpression : in_language PatternExpression : in_subset PatternExpression : interpolated PatternExpression : mappings PatternExpression : narrow_mappings PatternExpression : notes PatternExpression : partial_match PatternExpression : rank PatternExpression : related_mappings PatternExpression : see_also PatternExpression : source PatternExpression : structured_aliases PatternExpression : syntax PatternExpression : title PatternExpression : todos Inheritance PatternExpression [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance syntax 0..1 String the string value of the slot must conform to this regular expression expresse... direct interpolated 0..1 Boolean if true then the pattern is first string interpolated direct partial_match 0..1 Boolean if true then the pattern must match the whole string, as if enclosed in ^ direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used TypeExpression structured_pattern range PatternExpression AnonymousTypeExpression structured_pattern range PatternExpression TypeDefinition structured_pattern range PatternExpression SlotExpression structured_pattern range PatternExpression AnonymousSlotExpression structured_pattern range PatternExpression SlotDefinition structured_pattern range PatternExpression PatternExpression syntax domain PatternExpression PatternExpression interpolated domain PatternExpression PatternExpression partial_match domain PatternExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:PatternExpression native linkml:PatternExpression LinkML Source Direct name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata slots: - syntax - interpolated - partial_match Induced name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata attributes: syntax: name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax owner: pattern_expression domain_of: - pattern_expression range: string interpolated: name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated owner: pattern_expression domain_of: - pattern_expression range: boolean partial_match: name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: partial_match owner: pattern_expression domain_of: - pattern_expression range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: pattern_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: pattern_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: pattern_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: pattern_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: pattern_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: pattern_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: pattern_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: pattern_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: pattern_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: pattern_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: pattern_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: pattern_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: pattern_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: pattern_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: pattern_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: pattern_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: pattern_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: pattern_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: pattern_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: PatternExpression"},{"location":"PatternExpression/#class-patternexpression","text":"a regular expression pattern used to evaluate conformance of a string URI: linkml:PatternExpression classDiagram class PatternExpression Extensible <|-- PatternExpression Annotatable <|-- PatternExpression CommonMetadata <|-- PatternExpression PatternExpression : aliases PatternExpression : alt_descriptions PatternExpression : annotations PatternExpression : broad_mappings PatternExpression : close_mappings PatternExpression : comments PatternExpression : deprecated PatternExpression : deprecated_element_has_exact_replacement PatternExpression : deprecated_element_has_possible_replacement PatternExpression : description PatternExpression : exact_mappings PatternExpression : examples PatternExpression : extensions PatternExpression : from_schema PatternExpression : imported_from PatternExpression : in_language PatternExpression : in_subset PatternExpression : interpolated PatternExpression : mappings PatternExpression : narrow_mappings PatternExpression : notes PatternExpression : partial_match PatternExpression : rank PatternExpression : related_mappings PatternExpression : see_also PatternExpression : source PatternExpression : structured_aliases PatternExpression : syntax PatternExpression : title PatternExpression : todos","title":"Class: PatternExpression"},{"location":"PatternExpression/#inheritance","text":"PatternExpression [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"PatternExpression/#slots","text":"Name Cardinality and Range Description Inheritance syntax 0..1 String the string value of the slot must conform to this regular expression expresse... direct interpolated 0..1 Boolean if true then the pattern is first string interpolated direct partial_match 0..1 Boolean if true then the pattern must match the whole string, as if enclosed in ^ direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"PatternExpression/#usages","text":"used by used in type used TypeExpression structured_pattern range PatternExpression AnonymousTypeExpression structured_pattern range PatternExpression TypeDefinition structured_pattern range PatternExpression SlotExpression structured_pattern range PatternExpression AnonymousSlotExpression structured_pattern range PatternExpression SlotDefinition structured_pattern range PatternExpression PatternExpression syntax domain PatternExpression PatternExpression interpolated domain PatternExpression PatternExpression partial_match domain PatternExpression","title":"Usages"},{"location":"PatternExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PatternExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PatternExpression/#mappings","text":"Mapping Type Mapped Value self linkml:PatternExpression native linkml:PatternExpression","title":"Mappings"},{"location":"PatternExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"PatternExpression/#direct","text":"name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata slots: - syntax - interpolated - partial_match","title":"Direct"},{"location":"PatternExpression/#induced","text":"name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata attributes: syntax: name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax owner: pattern_expression domain_of: - pattern_expression range: string interpolated: name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated owner: pattern_expression domain_of: - pattern_expression range: boolean partial_match: name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: partial_match owner: pattern_expression domain_of: - pattern_expression range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: pattern_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: pattern_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: pattern_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: pattern_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: pattern_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: pattern_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: pattern_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: pattern_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: pattern_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: pattern_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: pattern_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: pattern_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: pattern_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: pattern_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: pattern_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: pattern_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: pattern_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: pattern_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: pattern_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"PermissibleValue/","text":"Class: PermissibleValue a permissible value, accompanied by intended text and an optional mapping to a concept URI URI: linkml:PermissibleValue classDiagram class PermissibleValue Extensible <|-- PermissibleValue Annotatable <|-- PermissibleValue CommonMetadata <|-- PermissibleValue PermissibleValue : aliases PermissibleValue : alt_descriptions PermissibleValue : annotations PermissibleValue : broad_mappings PermissibleValue : close_mappings PermissibleValue : comments PermissibleValue : deprecated PermissibleValue : deprecated_element_has_exact_replacement PermissibleValue : deprecated_element_has_possible_replacement PermissibleValue : description PermissibleValue : exact_mappings PermissibleValue : examples PermissibleValue : extensions PermissibleValue : from_schema PermissibleValue : imported_from PermissibleValue : in_language PermissibleValue : in_subset PermissibleValue : mappings PermissibleValue : meaning PermissibleValue : narrow_mappings PermissibleValue : notes PermissibleValue : rank PermissibleValue : related_mappings PermissibleValue : see_also PermissibleValue : source PermissibleValue : structured_aliases PermissibleValue : text PermissibleValue : title PermissibleValue : todos PermissibleValue : unit Inheritance PermissibleValue [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance text 1..1 String direct description 0..1 recommended NONE a description of the element's purpose and use direct meaning 0..1 Uriorcurie the value meaning of a permissible value direct unit 0..1 UnitOfMeasure an encoding of a unit direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used EnumExpression permissible_values range PermissibleValue AnonymousEnumExpression permissible_values range PermissibleValue EnumDefinition permissible_values range PermissibleValue PermissibleValue text domain PermissibleValue PermissibleValue meaning domain PermissibleValue Aliases PV Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:PermissibleValue native linkml:PermissibleValue close skos:Concept LinkML Source Direct name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slots: - text - description - meaning - unit slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value Induced name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value attributes: text: name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text owner: permissible_value domain_of: - permissible_value range: string description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: permissible_value domain_of: - common_metadata - permissible_value range: string recommended: true meaning: name: meaning description: the value meaning of a permissible value notes: - we may want to change the range of this (and other) elements in the model to an entitydescription type construct in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/ISO/IEC_11179 aliases: - PV meaning rank: 23 domain: permissible_value alias: meaning owner: permissible_value domain_of: - permissible_value range: uriorcurie unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: permissible_value domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: permissible_value domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: permissible_value domain_of: - annotatable - annotation range: annotation inlined: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: permissible_value domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: permissible_value domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: permissible_value domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: permissible_value domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: permissible_value domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: permissible_value domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: permissible_value domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: permissible_value domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: permissible_value domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: permissible_value domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: permissible_value domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: permissible_value domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: permissible_value domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: permissible_value domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: permissible_value domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: permissible_value domain_of: - common_metadata - class_rule range: integer","title":"Class: PermissibleValue"},{"location":"PermissibleValue/#class-permissiblevalue","text":"a permissible value, accompanied by intended text and an optional mapping to a concept URI URI: linkml:PermissibleValue classDiagram class PermissibleValue Extensible <|-- PermissibleValue Annotatable <|-- PermissibleValue CommonMetadata <|-- PermissibleValue PermissibleValue : aliases PermissibleValue : alt_descriptions PermissibleValue : annotations PermissibleValue : broad_mappings PermissibleValue : close_mappings PermissibleValue : comments PermissibleValue : deprecated PermissibleValue : deprecated_element_has_exact_replacement PermissibleValue : deprecated_element_has_possible_replacement PermissibleValue : description PermissibleValue : exact_mappings PermissibleValue : examples PermissibleValue : extensions PermissibleValue : from_schema PermissibleValue : imported_from PermissibleValue : in_language PermissibleValue : in_subset PermissibleValue : mappings PermissibleValue : meaning PermissibleValue : narrow_mappings PermissibleValue : notes PermissibleValue : rank PermissibleValue : related_mappings PermissibleValue : see_also PermissibleValue : source PermissibleValue : structured_aliases PermissibleValue : text PermissibleValue : title PermissibleValue : todos PermissibleValue : unit","title":"Class: PermissibleValue"},{"location":"PermissibleValue/#inheritance","text":"PermissibleValue [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"PermissibleValue/#slots","text":"Name Cardinality and Range Description Inheritance text 1..1 String direct description 0..1 recommended NONE a description of the element's purpose and use direct meaning 0..1 Uriorcurie the value meaning of a permissible value direct unit 0..1 UnitOfMeasure an encoding of a unit direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"PermissibleValue/#usages","text":"used by used in type used EnumExpression permissible_values range PermissibleValue AnonymousEnumExpression permissible_values range PermissibleValue EnumDefinition permissible_values range PermissibleValue PermissibleValue text domain PermissibleValue PermissibleValue meaning domain PermissibleValue","title":"Usages"},{"location":"PermissibleValue/#aliases","text":"PV","title":"Aliases"},{"location":"PermissibleValue/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PermissibleValue/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PermissibleValue/#mappings","text":"Mapping Type Mapped Value self linkml:PermissibleValue native linkml:PermissibleValue close skos:Concept","title":"Mappings"},{"location":"PermissibleValue/#linkml-source","text":"","title":"LinkML Source"},{"location":"PermissibleValue/#direct","text":"name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slots: - text - description - meaning - unit slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value","title":"Direct"},{"location":"PermissibleValue/#induced","text":"name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value attributes: text: name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text owner: permissible_value domain_of: - permissible_value range: string description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: permissible_value domain_of: - common_metadata - permissible_value range: string recommended: true meaning: name: meaning description: the value meaning of a permissible value notes: - we may want to change the range of this (and other) elements in the model to an entitydescription type construct in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/ISO/IEC_11179 aliases: - PV meaning rank: 23 domain: permissible_value alias: meaning owner: permissible_value domain_of: - permissible_value range: uriorcurie unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: permissible_value domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: permissible_value domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: permissible_value domain_of: - annotatable - annotation range: annotation inlined: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: permissible_value domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: permissible_value domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: permissible_value domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: permissible_value domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: permissible_value domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: permissible_value domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: permissible_value domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: permissible_value domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: permissible_value domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: permissible_value domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: permissible_value domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: permissible_value domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: permissible_value domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: permissible_value domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: permissible_value domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: permissible_value domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Prefix/","text":"Class: Prefix prefix URI tuple URI: linkml:Prefix classDiagram class Prefix Prefix : prefix_prefix Prefix : prefix_reference Slots Name Cardinality and Range Description Inheritance prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) direct prefix_reference 1..1 Uri A URI associated with a given prefix direct Usages used by used in type used SchemaDefinition prefixes range Prefix Prefix prefix_prefix domain Prefix Prefix prefix_reference domain Prefix Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Prefix native linkml:Prefix LinkML Source Direct name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 slots: - prefix_prefix - prefix_reference Induced name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 attributes: prefix_prefix: name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix owner: prefix domain_of: - prefix range: ncname prefix_reference: name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference owner: prefix domain_of: - prefix range: uri required: true","title":"Class: Prefix"},{"location":"Prefix/#class-prefix","text":"prefix URI tuple URI: linkml:Prefix classDiagram class Prefix Prefix : prefix_prefix Prefix : prefix_reference","title":"Class: Prefix"},{"location":"Prefix/#slots","text":"Name Cardinality and Range Description Inheritance prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) direct prefix_reference 1..1 Uri A URI associated with a given prefix direct","title":"Slots"},{"location":"Prefix/#usages","text":"used by used in type used SchemaDefinition prefixes range Prefix Prefix prefix_prefix domain Prefix Prefix prefix_reference domain Prefix","title":"Usages"},{"location":"Prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Prefix/#mappings","text":"Mapping Type Mapped Value self linkml:Prefix native linkml:Prefix","title":"Mappings"},{"location":"Prefix/#linkml-source","text":"","title":"LinkML Source"},{"location":"Prefix/#direct","text":"name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 slots: - prefix_prefix - prefix_reference","title":"Direct"},{"location":"Prefix/#induced","text":"name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 attributes: prefix_prefix: name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix owner: prefix domain_of: - prefix range: ncname prefix_reference: name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference owner: prefix domain_of: - prefix range: uri required: true","title":"Induced"},{"location":"PresenceEnum/","text":"Enum: PresenceEnum enumeration of conditions by which a slot value should be set URI: PresenceEnum Permissible Values Value Meaning Description UNCOMMITTED None PRESENT None ABSENT None Slots Name Description value_presence if true then a value must be present (for lists there must be at least one va... Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: presence_enum description: enumeration of conditions by which a slot value should be set from_schema: https://w3id.org/linkml/meta rank: 11 permissible_values: UNCOMMITTED: text: UNCOMMITTED PRESENT: text: PRESENT ABSENT: text: ABSENT","title":"Enum: PresenceEnum"},{"location":"PresenceEnum/#enum-presenceenum","text":"enumeration of conditions by which a slot value should be set URI: PresenceEnum","title":"Enum: PresenceEnum"},{"location":"PresenceEnum/#permissible-values","text":"Value Meaning Description UNCOMMITTED None PRESENT None ABSENT None","title":"Permissible Values"},{"location":"PresenceEnum/#slots","text":"Name Description value_presence if true then a value must be present (for lists there must be at least one va...","title":"Slots"},{"location":"PresenceEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PresenceEnum/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PresenceEnum/#linkml-source","text":"name: presence_enum description: enumeration of conditions by which a slot value should be set from_schema: https://w3id.org/linkml/meta rank: 11 permissible_values: UNCOMMITTED: text: UNCOMMITTED PRESENT: text: PRESENT ABSENT: text: ABSENT","title":"LinkML Source"},{"location":"PvFormulaOptions/","text":"Enum: PvFormulaOptions The formula used to generate the set of permissible values from the code_set values URI: PvFormulaOptions Permissible Values Value Meaning Description CODE None The permissible values are the set of possible codes in the code set CURIE None The permissible values are the set of CURIES in the code set URI None The permissible values are the set of code URIs in the code set FHIR_CODING None The permissible values are the set of FHIR coding elements derived from the c... Slots Name Description pv_formula Defines the specific formula to be used to generate the permissible values Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: pv_formula_options description: The formula used to generate the set of permissible values from the code_set values in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 permissible_values: CODE: text: CODE description: The permissible values are the set of possible codes in the code set CURIE: text: CURIE description: The permissible values are the set of CURIES in the code set URI: text: URI description: The permissible values are the set of code URIs in the code set FHIR_CODING: text: FHIR_CODING description: The permissible values are the set of FHIR coding elements derived from the code set","title":"Enum: PvFormulaOptions"},{"location":"PvFormulaOptions/#enum-pvformulaoptions","text":"The formula used to generate the set of permissible values from the code_set values URI: PvFormulaOptions","title":"Enum: PvFormulaOptions"},{"location":"PvFormulaOptions/#permissible-values","text":"Value Meaning Description CODE None The permissible values are the set of possible codes in the code set CURIE None The permissible values are the set of CURIES in the code set URI None The permissible values are the set of code URIs in the code set FHIR_CODING None The permissible values are the set of FHIR coding elements derived from the c...","title":"Permissible Values"},{"location":"PvFormulaOptions/#slots","text":"Name Description pv_formula Defines the specific formula to be used to generate the permissible values","title":"Slots"},{"location":"PvFormulaOptions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PvFormulaOptions/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PvFormulaOptions/#linkml-source","text":"name: pv_formula_options description: The formula used to generate the set of permissible values from the code_set values in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 permissible_values: CODE: text: CODE description: The permissible values are the set of possible codes in the code set CURIE: text: CURIE description: The permissible values are the set of CURIES in the code set URI: text: URI description: The permissible values are the set of code URIs in the code set FHIR_CODING: text: FHIR_CODING description: The permissible values are the set of FHIR coding elements derived from the code set","title":"LinkML Source"},{"location":"ReachabilityQuery/","text":"Class: ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types URI: linkml:ReachabilityQuery classDiagram class ReachabilityQuery ReachabilityQuery : include_self ReachabilityQuery : is_direct ReachabilityQuery : relationship_types ReachabilityQuery : source_nodes ReachabilityQuery : source_ontology ReachabilityQuery : traverse_up Slots Name Cardinality and Range Description Inheritance source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... direct source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query direct relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... direct is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... direct include_self 0..1 Boolean True if the query is reflexive direct traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are... direct Usages used by used in type used EnumExpression reachable_from range ReachabilityQuery AnonymousEnumExpression reachable_from range ReachabilityQuery EnumDefinition reachable_from range ReachabilityQuery ReachabilityQuery source_nodes domain ReachabilityQuery ReachabilityQuery relationship_types domain ReachabilityQuery ReachabilityQuery is_direct domain ReachabilityQuery ReachabilityQuery include_self domain ReachabilityQuery ReachabilityQuery traverse_up domain ReachabilityQuery Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ReachabilityQuery native linkml:ReachabilityQuery LinkML Source Direct name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - source_ontology - source_nodes - relationship_types - is_direct - include_self - traverse_up Induced name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: source_ontology: name: source_ontology description: An ontology or vocabulary or terminology that is used in a query to obtain a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - terminology - vocabulary rank: 1000 alias: source_ontology owner: reachability_query domain_of: - match_query - reachability_query range: uriorcurie source_nodes: name: source_nodes description: A list of nodes that are used in the reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: reachability_query multivalued: true alias: source_nodes owner: reachability_query domain_of: - reachability_query range: uriorcurie relationship_types: name: relationship_types description: A list of relationship types (properties) that are used in a reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - predicates - properties rank: 1000 domain: reachability_query multivalued: true alias: relationship_types owner: reachability_query domain_of: - reachability_query range: uriorcurie is_direct: name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct owner: reachability_query domain_of: - reachability_query range: boolean include_self: name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self owner: reachability_query domain_of: - reachability_query range: boolean traverse_up: name: traverse_up description: True if the direction of the reachability query is reversed and ancestors are retrieved in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - ancestors rank: 1000 domain: reachability_query alias: traverse_up owner: reachability_query domain_of: - reachability_query range: boolean","title":"Class: ReachabilityQuery"},{"location":"ReachabilityQuery/#class-reachabilityquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types URI: linkml:ReachabilityQuery classDiagram class ReachabilityQuery ReachabilityQuery : include_self ReachabilityQuery : is_direct ReachabilityQuery : relationship_types ReachabilityQuery : source_nodes ReachabilityQuery : source_ontology ReachabilityQuery : traverse_up","title":"Class: ReachabilityQuery"},{"location":"ReachabilityQuery/#slots","text":"Name Cardinality and Range Description Inheritance source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... direct source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query direct relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... direct is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... direct include_self 0..1 Boolean True if the query is reflexive direct traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are... direct","title":"Slots"},{"location":"ReachabilityQuery/#usages","text":"used by used in type used EnumExpression reachable_from range ReachabilityQuery AnonymousEnumExpression reachable_from range ReachabilityQuery EnumDefinition reachable_from range ReachabilityQuery ReachabilityQuery source_nodes domain ReachabilityQuery ReachabilityQuery relationship_types domain ReachabilityQuery ReachabilityQuery is_direct domain ReachabilityQuery ReachabilityQuery include_self domain ReachabilityQuery ReachabilityQuery traverse_up domain ReachabilityQuery","title":"Usages"},{"location":"ReachabilityQuery/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ReachabilityQuery/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ReachabilityQuery/#mappings","text":"Mapping Type Mapped Value self linkml:ReachabilityQuery native linkml:ReachabilityQuery","title":"Mappings"},{"location":"ReachabilityQuery/#linkml-source","text":"","title":"LinkML Source"},{"location":"ReachabilityQuery/#direct","text":"name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - source_ontology - source_nodes - relationship_types - is_direct - include_self - traverse_up","title":"Direct"},{"location":"ReachabilityQuery/#induced","text":"name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: source_ontology: name: source_ontology description: An ontology or vocabulary or terminology that is used in a query to obtain a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - terminology - vocabulary rank: 1000 alias: source_ontology owner: reachability_query domain_of: - match_query - reachability_query range: uriorcurie source_nodes: name: source_nodes description: A list of nodes that are used in the reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: reachability_query multivalued: true alias: source_nodes owner: reachability_query domain_of: - reachability_query range: uriorcurie relationship_types: name: relationship_types description: A list of relationship types (properties) that are used in a reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - predicates - properties rank: 1000 domain: reachability_query multivalued: true alias: relationship_types owner: reachability_query domain_of: - reachability_query range: uriorcurie is_direct: name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct owner: reachability_query domain_of: - reachability_query range: boolean include_self: name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self owner: reachability_query domain_of: - reachability_query range: boolean traverse_up: name: traverse_up description: True if the direction of the reachability query is reversed and ancestors are retrieved in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - ancestors rank: 1000 domain: reachability_query alias: traverse_up owner: reachability_query domain_of: - reachability_query range: boolean","title":"Induced"},{"location":"RelationalModelProfile/","text":"Subset: RelationalModelProfile _A profile that includes all the metamodel elements whose semantics can be expressed using the classic Relational Model. The Relational Model excludes collections (multivalued slots) as first class entities. Instead, these must be mapped to backreferences The classic Relational Model excludes inheritance and polymorphism -- these must be rolled down to concrete classes or otherwise transformed._ URI: RelationalModelProfile Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... UniqueKey a collection of slots whose values uniquely identify an instance of a class SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema ClassDefinition an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier attributes 0..* SlotDefinition Inline definition of slots unique_keys 0..* UniqueKey A collection of unique keys for this class EnumDefinition an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier UniqueKey a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key Slots in subset Slot Description name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema identifier True means that the key slot(s) uniquely identify the container required true means that the slot must be present in the loaded definition attributes Inline definition of slots unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key range defines the type of the object of the slot key True means that the key slot(s) uniquely identify the container Enumerations in subset Enumeration Description","title":"RelationalModelProfile"},{"location":"RelationalModelProfile/#subset-relationalmodelprofile","text":"_A profile that includes all the metamodel elements whose semantics can be expressed using the classic Relational Model. The Relational Model excludes collections (multivalued slots) as first class entities. Instead, these must be mapped to backreferences The classic Relational Model excludes inheritance and polymorphism -- these must be rolled down to concrete classes or otherwise transformed._ URI: RelationalModelProfile","title":"Subset: RelationalModelProfile"},{"location":"RelationalModelProfile/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"RelationalModelProfile/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"RelationalModelProfile/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Classes in subset"},{"location":"RelationalModelProfile/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema","title":"SchemaDefinition"},{"location":"RelationalModelProfile/#classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier attributes 0..* SlotDefinition Inline definition of slots unique_keys 0..* UniqueKey A collection of unique keys for this class","title":"ClassDefinition"},{"location":"RelationalModelProfile/#enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier","title":"EnumDefinition"},{"location":"RelationalModelProfile/#uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key","title":"UniqueKey"},{"location":"RelationalModelProfile/#slots-in-subset","text":"Slot Description name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema identifier True means that the key slot(s) uniquely identify the container required true means that the slot must be present in the loaded definition attributes Inline definition of slots unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key range defines the type of the object of the slot key True means that the key slot(s) uniquely identify the container","title":"Slots in subset"},{"location":"RelationalModelProfile/#enumerations-in-subset","text":"Enumeration Description","title":"Enumerations in subset"},{"location":"RelationalRoleEnum/","text":"Enum: RelationalRoleEnum enumeration of roles a slot on a relationship class can play URI: RelationalRoleEnum Permissible Values Value Meaning Description SUBJECT rdf:subject a slot with this role connects a relationship to its subject/source node OBJECT rdf:object a slot with this role connects a relationship to its object/target node PREDICATE rdf:predicate a slot with this role connects a relationship to its predicate/property NODE None a slot with this role connects a symmetric relationship to a node that repres... OTHER_ROLE None a slot with this role connects a relationship to a node that is not subject/o... Slots Name Description relational_role the role a slot on a relationship class plays, for example, the subject, obje... Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: relational_role_enum description: enumeration of roles a slot on a relationship class can play from_schema: https://w3id.org/linkml/meta rank: 3 permissible_values: SUBJECT: text: SUBJECT description: a slot with this role connects a relationship to its subject/source node meaning: rdf:subject OBJECT: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: rdf:object PREDICATE: text: PREDICATE description: a slot with this role connects a relationship to its predicate/property meaning: rdf:predicate NODE: text: NODE description: a slot with this role connects a symmetric relationship to a node that represents either subject or object node OTHER_ROLE: text: OTHER_ROLE description: a slot with this role connects a relationship to a node that is not subject/object/predicate","title":"Enum: RelationalRoleEnum"},{"location":"RelationalRoleEnum/#enum-relationalroleenum","text":"enumeration of roles a slot on a relationship class can play URI: RelationalRoleEnum","title":"Enum: RelationalRoleEnum"},{"location":"RelationalRoleEnum/#permissible-values","text":"Value Meaning Description SUBJECT rdf:subject a slot with this role connects a relationship to its subject/source node OBJECT rdf:object a slot with this role connects a relationship to its object/target node PREDICATE rdf:predicate a slot with this role connects a relationship to its predicate/property NODE None a slot with this role connects a symmetric relationship to a node that repres... OTHER_ROLE None a slot with this role connects a relationship to a node that is not subject/o...","title":"Permissible Values"},{"location":"RelationalRoleEnum/#slots","text":"Name Description relational_role the role a slot on a relationship class plays, for example, the subject, obje...","title":"Slots"},{"location":"RelationalRoleEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"RelationalRoleEnum/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"RelationalRoleEnum/#linkml-source","text":"name: relational_role_enum description: enumeration of roles a slot on a relationship class can play from_schema: https://w3id.org/linkml/meta rank: 3 permissible_values: SUBJECT: text: SUBJECT description: a slot with this role connects a relationship to its subject/source node meaning: rdf:subject OBJECT: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: rdf:object PREDICATE: text: PREDICATE description: a slot with this role connects a relationship to its predicate/property meaning: rdf:predicate NODE: text: NODE description: a slot with this role connects a symmetric relationship to a node that represents either subject or object node OTHER_ROLE: text: OTHER_ROLE description: a slot with this role connects a relationship to a node that is not subject/object/predicate","title":"LinkML Source"},{"location":"SchemaDefinition/","text":"Class: SchemaDefinition a collection of subset, type, slot and class definitions URI: linkml:SchemaDefinition classDiagram class SchemaDefinition Element <|-- SchemaDefinition SchemaDefinition : aliases SchemaDefinition : alt_descriptions SchemaDefinition : annotations SchemaDefinition : broad_mappings SchemaDefinition : categories SchemaDefinition : classes SchemaDefinition : close_mappings SchemaDefinition : comments SchemaDefinition : conforms_to SchemaDefinition : default_curi_maps SchemaDefinition : default_prefix SchemaDefinition : default_range SchemaDefinition : definition_uri SchemaDefinition : deprecated SchemaDefinition : deprecated_element_has_exact_replacement SchemaDefinition : deprecated_element_has_possible_replacement SchemaDefinition : description SchemaDefinition : emit_prefixes SchemaDefinition : enums SchemaDefinition : exact_mappings SchemaDefinition : examples SchemaDefinition : extensions SchemaDefinition : from_schema SchemaDefinition : generation_date SchemaDefinition : id SchemaDefinition : id_prefixes SchemaDefinition : imported_from SchemaDefinition : imports SchemaDefinition : in_language SchemaDefinition : in_subset SchemaDefinition : keywords SchemaDefinition : license SchemaDefinition : local_names SchemaDefinition : mappings SchemaDefinition : metamodel_version SchemaDefinition : name SchemaDefinition : narrow_mappings SchemaDefinition : notes SchemaDefinition : prefixes SchemaDefinition : rank SchemaDefinition : related_mappings SchemaDefinition : see_also SchemaDefinition : settings SchemaDefinition : slot_definitions SchemaDefinition : slot_names_unique SchemaDefinition : source SchemaDefinition : source_file SchemaDefinition : source_file_date SchemaDefinition : source_file_size SchemaDefinition : structured_aliases SchemaDefinition : subsets SchemaDefinition : title SchemaDefinition : todos SchemaDefinition : types SchemaDefinition : version Inheritance Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition Slots Name Cardinality and Range Description Inheritance id 1..1 Uri The official schema URI direct version 0..1 NONE particular version of schema direct imports 0..* Uriorcurie other schemas that are included in this schema direct license 0..1 NONE license for the schema direct prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... direct emit_prefixes 0..* Ncname a list of Curie prefixes that are used in the representation of instances of ... direct default_curi_maps 0..* NONE ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... direct default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab direct default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... direct subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema direct types 0..* TypeDefinition An index to the collection of all type definitions in the schema direct enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema direct slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema direct classes 0..* ClassDefinition An index to the collection of all class definitions in the schema direct metamodel_version 0..1 NONE Version of the metamodel used to load the schema direct source_file 0..1 NONE name, uri or description of the source of the schema direct source_file_date 0..1 Datetime modification date of the source of the schema direct source_file_size 0..1 Integer size in bytes of the source of the schema direct generation_date 0..1 Datetime date and time that the schema was loaded/generated direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct settings 0..* Setting A collection of global variable settings direct categories 0..* Uriorcurie controlled terms used to categorize an element direct keywords 0..* String Keywords or tags used to describe the element direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element name 1..1 NONE the unique name of the element within the context of the schema Element rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used SchemaDefinition id domain SchemaDefinition SchemaDefinition version domain SchemaDefinition SchemaDefinition imports domain SchemaDefinition SchemaDefinition license domain SchemaDefinition SchemaDefinition prefixes domain SchemaDefinition SchemaDefinition emit_prefixes domain SchemaDefinition SchemaDefinition default_curi_maps domain SchemaDefinition SchemaDefinition default_prefix domain SchemaDefinition SchemaDefinition default_range domain SchemaDefinition SchemaDefinition subsets domain SchemaDefinition SchemaDefinition types domain SchemaDefinition SchemaDefinition enums domain SchemaDefinition SchemaDefinition slot_definitions domain SchemaDefinition SchemaDefinition classes domain SchemaDefinition SchemaDefinition metamodel_version domain SchemaDefinition SchemaDefinition source_file domain SchemaDefinition SchemaDefinition source_file_date domain SchemaDefinition SchemaDefinition source_file_size domain SchemaDefinition SchemaDefinition generation_date domain SchemaDefinition SchemaDefinition settings domain SchemaDefinition Aliases data dictionary See Also https://en.wikipedia.org/wiki/Data_dictionary Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SchemaDefinition native linkml:SchemaDefinition close qb:ComponentSet LinkML Source Direct name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slots: - id - version - imports - license - prefixes - emit_prefixes - default_curi_maps - default_prefix - default_range - subsets - types - enums - slot_definitions - classes - metamodel_version - source_file - source_file_date - source_file_size - generation_date - slot_names_unique - settings - categories - keywords slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname tree_root: true Induced name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname attributes: id: name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id owner: schema_definition domain_of: - schema_definition range: uri required: true version: name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version owner: schema_definition domain_of: - schema_definition range: string imports: name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports owner: schema_definition domain_of: - schema_definition range: uriorcurie license: name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license owner: schema_definition domain_of: - schema_definition range: string prefixes: name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes owner: schema_definition domain_of: - schema_definition range: prefix inlined: true emit_prefixes: name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes owner: schema_definition domain_of: - schema_definition range: ncname default_curi_maps: name: default_curi_maps description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: default_curi_maps owner: schema_definition domain_of: - schema_definition range: string default_prefix: name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 11 domain: schema_definition ifabsent: default_ns alias: default_prefix owner: schema_definition domain_of: - schema_definition range: string default_range: name: default_range description: default slot range to be used if range element is omitted from a slot definition notes: - restricted to type definitions for the time being. Could be broadened if required in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 13 domain: schema_definition alias: default_range owner: schema_definition domain_of: - schema_definition range: type_definition subsets: name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets owner: schema_definition domain_of: - schema_definition range: subset_definition inlined: true types: name: types description: An index to the collection of all type definitions in the schema in_subset: - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 6 domain: schema_definition multivalued: true alias: types owner: schema_definition domain_of: - schema_definition range: type_definition inlined: true enums: name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums owner: schema_definition domain_of: - schema_definition range: enum_definition inlined: true slot_definitions: name: slot_definitions description: An index to the collection of all slot definitions in the schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 domain: schema_definition multivalued: true alias: slots owner: schema_definition domain_of: - schema_definition range: slot_definition inlined: true classes: name: classes description: An index to the collection of all class definitions in the schema in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 3 domain: schema_definition multivalued: true alias: classes owner: schema_definition domain_of: - schema_definition range: class_definition inlined: true metamodel_version: name: metamodel_version description: Version of the metamodel used to load the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: metamodel_version owner: schema_definition domain_of: - schema_definition range: string source_file: name: source_file description: name, uri or description of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: suppplied by the schema loader alias: source_file owner: schema_definition domain_of: - schema_definition range: string source_file_date: name: source_file_date description: modification date of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the loader alias: source_file_date owner: schema_definition domain_of: - schema_definition range: datetime source_file_size: name: source_file_size description: size in bytes of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: source_file_size owner: schema_definition domain_of: - schema_definition range: integer generation_date: name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date owner: schema_definition domain_of: - schema_definition range: datetime slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: schema_definition domain_of: - schema_definition - class_definition range: boolean settings: name: settings description: A collection of global variable settings comments: - global variables are used in string interpolation in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 20 domain: schema_definition multivalued: true alias: settings owner: schema_definition domain_of: - schema_definition range: setting inlined: true categories: name: categories description: controlled terms used to categorize an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: schema_definition domain_of: - schema_definition - structured_alias range: uriorcurie keywords: name: keywords description: Keywords or tags used to describe the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: keyword domain: element slot_uri: schema:keywords multivalued: true alias: keywords owner: schema_definition domain_of: - schema_definition range: string name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set from_schema: https://w3id.org/linkml/meta rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: schema_definition domain_of: - element - element range: ncname id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: schema_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: schema_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: schema_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: schema_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: schema_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: schema_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: schema_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: schema_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: schema_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: schema_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: schema_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: schema_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: schema_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: schema_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: schema_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: schema_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: schema_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: schema_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: schema_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: schema_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: schema_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: schema_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: schema_definition domain_of: - common_metadata - class_rule range: integer tree_root: true","title":"Class: SchemaDefinition"},{"location":"SchemaDefinition/#class-schemadefinition","text":"a collection of subset, type, slot and class definitions URI: linkml:SchemaDefinition classDiagram class SchemaDefinition Element <|-- SchemaDefinition SchemaDefinition : aliases SchemaDefinition : alt_descriptions SchemaDefinition : annotations SchemaDefinition : broad_mappings SchemaDefinition : categories SchemaDefinition : classes SchemaDefinition : close_mappings SchemaDefinition : comments SchemaDefinition : conforms_to SchemaDefinition : default_curi_maps SchemaDefinition : default_prefix SchemaDefinition : default_range SchemaDefinition : definition_uri SchemaDefinition : deprecated SchemaDefinition : deprecated_element_has_exact_replacement SchemaDefinition : deprecated_element_has_possible_replacement SchemaDefinition : description SchemaDefinition : emit_prefixes SchemaDefinition : enums SchemaDefinition : exact_mappings SchemaDefinition : examples SchemaDefinition : extensions SchemaDefinition : from_schema SchemaDefinition : generation_date SchemaDefinition : id SchemaDefinition : id_prefixes SchemaDefinition : imported_from SchemaDefinition : imports SchemaDefinition : in_language SchemaDefinition : in_subset SchemaDefinition : keywords SchemaDefinition : license SchemaDefinition : local_names SchemaDefinition : mappings SchemaDefinition : metamodel_version SchemaDefinition : name SchemaDefinition : narrow_mappings SchemaDefinition : notes SchemaDefinition : prefixes SchemaDefinition : rank SchemaDefinition : related_mappings SchemaDefinition : see_also SchemaDefinition : settings SchemaDefinition : slot_definitions SchemaDefinition : slot_names_unique SchemaDefinition : source SchemaDefinition : source_file SchemaDefinition : source_file_date SchemaDefinition : source_file_size SchemaDefinition : structured_aliases SchemaDefinition : subsets SchemaDefinition : title SchemaDefinition : todos SchemaDefinition : types SchemaDefinition : version","title":"Class: SchemaDefinition"},{"location":"SchemaDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition","title":"Inheritance"},{"location":"SchemaDefinition/#slots","text":"Name Cardinality and Range Description Inheritance id 1..1 Uri The official schema URI direct version 0..1 NONE particular version of schema direct imports 0..* Uriorcurie other schemas that are included in this schema direct license 0..1 NONE license for the schema direct prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... direct emit_prefixes 0..* Ncname a list of Curie prefixes that are used in the representation of instances of ... direct default_curi_maps 0..* NONE ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... direct default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab direct default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... direct subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema direct types 0..* TypeDefinition An index to the collection of all type definitions in the schema direct enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema direct slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema direct classes 0..* ClassDefinition An index to the collection of all class definitions in the schema direct metamodel_version 0..1 NONE Version of the metamodel used to load the schema direct source_file 0..1 NONE name, uri or description of the source of the schema direct source_file_date 0..1 Datetime modification date of the source of the schema direct source_file_size 0..1 Integer size in bytes of the source of the schema direct generation_date 0..1 Datetime date and time that the schema was loaded/generated direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct settings 0..* Setting A collection of global variable settings direct categories 0..* Uriorcurie controlled terms used to categorize an element direct keywords 0..* String Keywords or tags used to describe the element direct in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element title 0..1 NONE the official title of the element CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element name 1..1 NONE the unique name of the element within the context of the schema Element rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"SchemaDefinition/#usages","text":"used by used in type used SchemaDefinition id domain SchemaDefinition SchemaDefinition version domain SchemaDefinition SchemaDefinition imports domain SchemaDefinition SchemaDefinition license domain SchemaDefinition SchemaDefinition prefixes domain SchemaDefinition SchemaDefinition emit_prefixes domain SchemaDefinition SchemaDefinition default_curi_maps domain SchemaDefinition SchemaDefinition default_prefix domain SchemaDefinition SchemaDefinition default_range domain SchemaDefinition SchemaDefinition subsets domain SchemaDefinition SchemaDefinition types domain SchemaDefinition SchemaDefinition enums domain SchemaDefinition SchemaDefinition slot_definitions domain SchemaDefinition SchemaDefinition classes domain SchemaDefinition SchemaDefinition metamodel_version domain SchemaDefinition SchemaDefinition source_file domain SchemaDefinition SchemaDefinition source_file_date domain SchemaDefinition SchemaDefinition source_file_size domain SchemaDefinition SchemaDefinition generation_date domain SchemaDefinition SchemaDefinition settings domain SchemaDefinition","title":"Usages"},{"location":"SchemaDefinition/#aliases","text":"data dictionary","title":"Aliases"},{"location":"SchemaDefinition/#see-also","text":"https://en.wikipedia.org/wiki/Data_dictionary","title":"See Also"},{"location":"SchemaDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SchemaDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SchemaDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:SchemaDefinition native linkml:SchemaDefinition close qb:ComponentSet","title":"Mappings"},{"location":"SchemaDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"SchemaDefinition/#direct","text":"name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slots: - id - version - imports - license - prefixes - emit_prefixes - default_curi_maps - default_prefix - default_range - subsets - types - enums - slot_definitions - classes - metamodel_version - source_file - source_file_date - source_file_size - generation_date - slot_names_unique - settings - categories - keywords slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname tree_root: true","title":"Direct"},{"location":"SchemaDefinition/#induced","text":"name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname attributes: id: name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id owner: schema_definition domain_of: - schema_definition range: uri required: true version: name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version owner: schema_definition domain_of: - schema_definition range: string imports: name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports owner: schema_definition domain_of: - schema_definition range: uriorcurie license: name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license owner: schema_definition domain_of: - schema_definition range: string prefixes: name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes owner: schema_definition domain_of: - schema_definition range: prefix inlined: true emit_prefixes: name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes owner: schema_definition domain_of: - schema_definition range: ncname default_curi_maps: name: default_curi_maps description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: default_curi_maps owner: schema_definition domain_of: - schema_definition range: string default_prefix: name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 11 domain: schema_definition ifabsent: default_ns alias: default_prefix owner: schema_definition domain_of: - schema_definition range: string default_range: name: default_range description: default slot range to be used if range element is omitted from a slot definition notes: - restricted to type definitions for the time being. Could be broadened if required in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 13 domain: schema_definition alias: default_range owner: schema_definition domain_of: - schema_definition range: type_definition subsets: name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets owner: schema_definition domain_of: - schema_definition range: subset_definition inlined: true types: name: types description: An index to the collection of all type definitions in the schema in_subset: - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 6 domain: schema_definition multivalued: true alias: types owner: schema_definition domain_of: - schema_definition range: type_definition inlined: true enums: name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums owner: schema_definition domain_of: - schema_definition range: enum_definition inlined: true slot_definitions: name: slot_definitions description: An index to the collection of all slot definitions in the schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 domain: schema_definition multivalued: true alias: slots owner: schema_definition domain_of: - schema_definition range: slot_definition inlined: true classes: name: classes description: An index to the collection of all class definitions in the schema in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 3 domain: schema_definition multivalued: true alias: classes owner: schema_definition domain_of: - schema_definition range: class_definition inlined: true metamodel_version: name: metamodel_version description: Version of the metamodel used to load the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: metamodel_version owner: schema_definition domain_of: - schema_definition range: string source_file: name: source_file description: name, uri or description of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: suppplied by the schema loader alias: source_file owner: schema_definition domain_of: - schema_definition range: string source_file_date: name: source_file_date description: modification date of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the loader alias: source_file_date owner: schema_definition domain_of: - schema_definition range: datetime source_file_size: name: source_file_size description: size in bytes of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: source_file_size owner: schema_definition domain_of: - schema_definition range: integer generation_date: name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date owner: schema_definition domain_of: - schema_definition range: datetime slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: schema_definition domain_of: - schema_definition - class_definition range: boolean settings: name: settings description: A collection of global variable settings comments: - global variables are used in string interpolation in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 20 domain: schema_definition multivalued: true alias: settings owner: schema_definition domain_of: - schema_definition range: setting inlined: true categories: name: categories description: controlled terms used to categorize an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: schema_definition domain_of: - schema_definition - structured_alias range: uriorcurie keywords: name: keywords description: Keywords or tags used to describe the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: keyword domain: element slot_uri: schema:keywords multivalued: true alias: keywords owner: schema_definition domain_of: - schema_definition range: string name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set from_schema: https://w3id.org/linkml/meta rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: schema_definition domain_of: - element - element range: ncname id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: schema_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: schema_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: schema_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: schema_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: schema_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: schema_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: schema_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: schema_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: schema_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: schema_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: schema_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: schema_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: schema_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: schema_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: schema_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: schema_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: schema_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: schema_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: schema_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: schema_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: schema_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: schema_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: schema_definition domain_of: - common_metadata - class_rule range: integer tree_root: true","title":"Induced"},{"location":"Setting/","text":"Class: Setting assignment of a key to a value URI: linkml:Setting classDiagram class Setting Setting : setting_key Setting : setting_value Slots Name Cardinality and Range Description Inheritance setting_key 0..1 Ncname the variable name for a setting direct setting_value 1..1 String The value assigned for a setting direct Usages used by used in type used SchemaDefinition settings range Setting ImportExpression import_map range Setting Setting setting_key domain Setting Setting setting_value domain Setting Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Setting native linkml:Setting LinkML Source Direct name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - setting_key - setting_value Induced name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: setting_key: name: setting_key description: the variable name for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting key: true alias: setting_key owner: setting domain_of: - setting range: ncname setting_value: name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value owner: setting domain_of: - setting range: string required: true","title":"Class: Setting"},{"location":"Setting/#class-setting","text":"assignment of a key to a value URI: linkml:Setting classDiagram class Setting Setting : setting_key Setting : setting_value","title":"Class: Setting"},{"location":"Setting/#slots","text":"Name Cardinality and Range Description Inheritance setting_key 0..1 Ncname the variable name for a setting direct setting_value 1..1 String The value assigned for a setting direct","title":"Slots"},{"location":"Setting/#usages","text":"used by used in type used SchemaDefinition settings range Setting ImportExpression import_map range Setting Setting setting_key domain Setting Setting setting_value domain Setting","title":"Usages"},{"location":"Setting/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Setting/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Setting/#mappings","text":"Mapping Type Mapped Value self linkml:Setting native linkml:Setting","title":"Mappings"},{"location":"Setting/#linkml-source","text":"","title":"LinkML Source"},{"location":"Setting/#direct","text":"name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - setting_key - setting_value","title":"Direct"},{"location":"Setting/#induced","text":"name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: setting_key: name: setting_key description: the variable name for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting key: true alias: setting_key owner: setting domain_of: - setting range: ncname setting_value: name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value owner: setting domain_of: - setting range: string required: true","title":"Induced"},{"location":"SlotDefinition/","text":"Class: SlotDefinition an element that describes how instances are related to other instances URI: linkml:SlotDefinition classDiagram class SlotDefinition SlotExpression <|-- SlotDefinition Definition <|-- SlotDefinition SlotDefinition : abstract SlotDefinition : alias SlotDefinition : aliases SlotDefinition : all_members SlotDefinition : all_of SlotDefinition : alt_descriptions SlotDefinition : annotations SlotDefinition : any_of SlotDefinition : apply_to SlotDefinition : asymmetric SlotDefinition : broad_mappings SlotDefinition : children_are_mutually_disjoint SlotDefinition : close_mappings SlotDefinition : comments SlotDefinition : conforms_to SlotDefinition : created_by SlotDefinition : created_on SlotDefinition : definition_uri SlotDefinition : deprecated SlotDefinition : deprecated_element_has_exact_replacement SlotDefinition : deprecated_element_has_possible_replacement SlotDefinition : description SlotDefinition : designates_type SlotDefinition : disjoint_with SlotDefinition : domain SlotDefinition : domain_of SlotDefinition : enum_range SlotDefinition : equals_expression SlotDefinition : equals_number SlotDefinition : equals_string SlotDefinition : equals_string_in SlotDefinition : exact_mappings SlotDefinition : exactly_one_of SlotDefinition : examples SlotDefinition : extensions SlotDefinition : from_schema SlotDefinition : has_member SlotDefinition : id_prefixes SlotDefinition : identifier SlotDefinition : ifabsent SlotDefinition : implicit_prefix SlotDefinition : imported_from SlotDefinition : in_language SlotDefinition : in_subset SlotDefinition : inherited SlotDefinition : inlined SlotDefinition : inlined_as_list SlotDefinition : inverse SlotDefinition : irreflexive SlotDefinition : is_a SlotDefinition : is_class_field SlotDefinition : is_grouping_slot SlotDefinition : is_usage_slot SlotDefinition : key SlotDefinition : last_updated_on SlotDefinition : list_elements_ordered SlotDefinition : list_elements_unique SlotDefinition : local_names SlotDefinition : locally_reflexive SlotDefinition : mappings SlotDefinition : maximum_cardinality SlotDefinition : maximum_value SlotDefinition : minimum_cardinality SlotDefinition : minimum_value SlotDefinition : mixin SlotDefinition : mixins SlotDefinition : modified_by SlotDefinition : multivalued SlotDefinition : name SlotDefinition : narrow_mappings SlotDefinition : none_of SlotDefinition : notes SlotDefinition : owner SlotDefinition : path_rule SlotDefinition : pattern SlotDefinition : range SlotDefinition : range_expression SlotDefinition : rank SlotDefinition : readonly SlotDefinition : recommended SlotDefinition : reflexive SlotDefinition : reflexive_transitive_form_of SlotDefinition : related_mappings SlotDefinition : relational_role SlotDefinition : required SlotDefinition : role SlotDefinition : see_also SlotDefinition : shared SlotDefinition : singular_name SlotDefinition : slot_group SlotDefinition : slot_uri SlotDefinition : source SlotDefinition : status SlotDefinition : string_serialization SlotDefinition : structured_aliases SlotDefinition : structured_pattern SlotDefinition : subproperty_of SlotDefinition : symmetric SlotDefinition : title SlotDefinition : todos SlotDefinition : transitive SlotDefinition : transitive_form_of SlotDefinition : union_of SlotDefinition : unit SlotDefinition : usage_slot_name SlotDefinition : value_presence SlotDefinition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition SlotDefinition [ SlotExpression ] Slots Name Cardinality and Range Description Inheritance singular_name 0..1 NONE a name that is used in the singular form direct domain 0..1 ClassDefinition defines the type of the subject of the slot direct slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application direct multivalued 0..1 Boolean true means that slot can have more than one value direct inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses direct readonly 0..1 String If present, slot is read only direct ifabsent 0..1 String function that provides a default value for the slot direct list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... direct list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... direct shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... direct key 0..1 Boolean True means that the key slot(s) uniquely identify the container direct identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container direct designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... direct alias 0..1 String the name used for a slot in the context of its owning class direct owner 0..1 Definition the \"owner\" of the slot direct domain_of 0..* ClassDefinition the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context direct subproperty_of 0..1 SlotDefinition Ontology property which this slot is a subproperty of direct symmetric 0..1 NONE If s is symmetric, and i direct reflexive 0..1 NONE If s is reflexive, then i direct locally_reflexive 0..1 NONE If s is locally_reflexive, then i direct irreflexive 0..1 NONE If s is irreflexive, then there exists no i such i direct asymmetric 0..1 NONE If s is antisymmetric, and i direct transitive 0..1 NONE If s is transitive, and i direct inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... direct is_class_field 0..1 Boolean indicates that for any instance, i, the domain of this slot will include an a... direct transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... direct reflexive_transitive_form_of 0..1 NONE transitive_form_of including the reflexive case direct role 0..1 String a textual descriptor that indicates the role played by the slot range direct is_usage_slot 0..1 Boolean True means that this slot was defined in a slot_usage situation direct usage_slot_name 0..1 String The name of the slot referenced in the slot_usage direct relational_role 0..1 RelationalRoleEnum the role a slot on a relationship class plays, for example, the subject, obje... direct slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... direct is_grouping_slot 0..1 Boolean true if this slot is a grouping slot direct path_rule 0..1 PathExpression a rule for inferring a slot assignment based on evaluating a path through a s... direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata status 0..1 Uriorcurie status of the element Definition equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata last_updated_on 0..1 Datetime time at which the element was last updated Definition see_also 0..* Uriorcurie a reference CommonMetadata equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata created_on 0..1 Datetime time at which the element was created Definition any_of 0..1 Expression holds if at least one of the expressions hold SlotExpression id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression aliases 0..* String Alaternate names for the element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression name 1..1 NONE the unique name of the element within the context of the schema Element unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition range 0..1 Element defines the type of the object of the slot SlotExpression exactly_one_of 0..1 Expression holds if only one of the expressions hold SlotExpression in_language 0..1 String CommonMetadata inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata modified_by 0..1 Uriorcurie agent that modified the element Definition in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression all_of 0..1 Expression holds if all of the expressions hold SlotExpression required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression none_of 0..1 Expression holds if none of the expressions hold SlotExpression created_by 0..1 Uriorcurie agent that created the element Definition rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used SchemaDefinition slot_definitions range SlotDefinition TypeExpression minimum_value domain SlotDefinition TypeExpression maximum_value domain SlotDefinition AnonymousTypeExpression minimum_value domain SlotDefinition AnonymousTypeExpression maximum_value domain SlotDefinition TypeDefinition minimum_value domain SlotDefinition TypeDefinition maximum_value domain SlotDefinition PathExpression traverse range SlotDefinition SlotExpression range domain SlotDefinition SlotExpression required domain SlotDefinition SlotExpression recommended domain SlotDefinition SlotExpression inlined domain SlotDefinition SlotExpression inlined_as_list domain SlotDefinition SlotExpression minimum_value domain SlotDefinition SlotExpression maximum_value domain SlotDefinition SlotExpression value_presence domain SlotDefinition AnonymousSlotExpression range domain SlotDefinition AnonymousSlotExpression required domain SlotDefinition AnonymousSlotExpression recommended domain SlotDefinition AnonymousSlotExpression inlined domain SlotDefinition AnonymousSlotExpression inlined_as_list domain SlotDefinition AnonymousSlotExpression minimum_value domain SlotDefinition AnonymousSlotExpression maximum_value domain SlotDefinition AnonymousSlotExpression value_presence domain SlotDefinition SlotDefinition singular_name domain SlotDefinition SlotDefinition domain domain SlotDefinition SlotDefinition slot_uri domain SlotDefinition SlotDefinition multivalued domain SlotDefinition SlotDefinition inherited domain SlotDefinition SlotDefinition readonly domain SlotDefinition SlotDefinition ifabsent domain SlotDefinition SlotDefinition list_elements_unique domain SlotDefinition SlotDefinition list_elements_ordered domain SlotDefinition SlotDefinition shared domain SlotDefinition SlotDefinition key domain SlotDefinition SlotDefinition identifier domain SlotDefinition SlotDefinition designates_type domain SlotDefinition SlotDefinition alias domain SlotDefinition SlotDefinition owner domain SlotDefinition SlotDefinition domain_of domain SlotDefinition SlotDefinition subproperty_of domain SlotDefinition SlotDefinition subproperty_of range SlotDefinition SlotDefinition symmetric domain SlotDefinition SlotDefinition reflexive domain SlotDefinition SlotDefinition locally_reflexive domain SlotDefinition SlotDefinition irreflexive domain SlotDefinition SlotDefinition asymmetric domain SlotDefinition SlotDefinition transitive domain SlotDefinition SlotDefinition inverse domain SlotDefinition SlotDefinition inverse range SlotDefinition SlotDefinition is_class_field domain SlotDefinition SlotDefinition transitive_form_of range SlotDefinition SlotDefinition reflexive_transitive_form_of range SlotDefinition SlotDefinition role domain SlotDefinition SlotDefinition is_usage_slot domain SlotDefinition SlotDefinition usage_slot_name domain SlotDefinition SlotDefinition relational_role domain SlotDefinition SlotDefinition slot_group domain SlotDefinition SlotDefinition slot_group range SlotDefinition SlotDefinition is_grouping_slot domain SlotDefinition SlotDefinition path_rule domain SlotDefinition SlotDefinition disjoint_with range SlotDefinition SlotDefinition union_of range SlotDefinition SlotDefinition range domain SlotDefinition SlotDefinition required domain SlotDefinition SlotDefinition recommended domain SlotDefinition SlotDefinition inlined domain SlotDefinition SlotDefinition inlined_as_list domain SlotDefinition SlotDefinition minimum_value domain SlotDefinition SlotDefinition maximum_value domain SlotDefinition SlotDefinition value_presence domain SlotDefinition SlotDefinition is_a range SlotDefinition SlotDefinition mixins range SlotDefinition SlotDefinition apply_to range SlotDefinition ClassExpression slot_conditions range SlotDefinition AnonymousClassExpression slot_conditions range SlotDefinition ClassDefinition slots range SlotDefinition ClassDefinition slot_usage range SlotDefinition ClassDefinition attributes range SlotDefinition ClassDefinition defining_slots range SlotDefinition ClassDefinition slot_conditions range SlotDefinition UniqueKey unique_key_slots range SlotDefinition Aliases slot field property attribute column variable Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SlotDefinition native linkml:SlotDefinition close rdf:Property, qb:ComponentProperty LinkML Source Direct name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slots: - singular_name - domain - slot_uri - multivalued - inherited - readonly - ifabsent - list_elements_unique - list_elements_ordered - shared - key - identifier - designates_type - alias - owner - domain_of - subproperty_of - symmetric - reflexive - locally_reflexive - irreflexive - asymmetric - transitive - inverse - is_class_field - transitive_form_of - reflexive_transitive_form_of - role - is_usage_slot - usage_slot_name - relational_role - slot_group - is_grouping_slot - path_rule - disjoint_with - children_are_mutually_disjoint - union_of slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition Induced name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition attributes: singular_name: name: singular_name description: a name that is used in the singular form in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: skos:altLabel alias: singular_name owner: slot_definition domain_of: - slot_definition range: string domain: name: domain description: \"defines the type of the subject of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain owner: slot_definition domain_of: - slot_definition range: class_definition slot_uri: name: slot_uri description: predicate of this slot for semantic web application in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: slot_definition ifabsent: slot_curie alias: slot_uri owner: slot_definition domain_of: - slot_definition range: uriorcurie multivalued: name: multivalued description: true means that slot can have more than one value in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 7 domain: slot_definition inherited: true alias: multivalued owner: slot_definition domain_of: - slot_definition range: boolean inherited: name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited owner: slot_definition domain_of: - slot_definition range: boolean readonly: name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly owner: slot_definition domain_of: - slot_definition range: string ifabsent: name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value)\\ \\ -- integer value\\n * str(value) -- string value\\n * default_range -- schema\\ \\ default range\\n * bnode -- blank node identifier\\n * slot_uri -- URI for\\ \\ the slot\\n * class_curie -- CURIE for the containing class\\n * class_uri\\ \\ -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent owner: slot_definition domain_of: - slot_definition range: string list_elements_unique: name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique owner: slot_definition domain_of: - slot_definition range: boolean list_elements_ordered: name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered owner: slot_definition domain_of: - slot_definition range: boolean shared: name: shared description: If True, then the relationship between the slot domain and range is many to one or many to many in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - inverse functional - many to one or many rank: 1000 domain: slot_definition inherited: true alias: shared owner: slot_definition domain_of: - slot_definition range: boolean key: name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. Keys cannot be optional in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: key owner: slot_definition domain_of: - slot_definition range: boolean identifier: name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier owner: slot_definition domain_of: - slot_definition range: boolean designates_type: name: designates_type description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - type designator rank: 1000 domain: slot_definition inherited: true alias: designates_type owner: slot_definition domain_of: - slot_definition range: boolean alias: name: alias description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 6 domain: slot_definition slot_uri: skos:prefLabel alias: alias owner: slot_definition domain_of: - slot_definition range: string owner: name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner owner: slot_definition domain_of: - slot_definition range: definition domain_of: name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of owner: slot_definition domain_of: - slot_definition range: class_definition subproperty_of: name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of owner: slot_definition domain_of: - slot_definition range: slot_definition symmetric: name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric owner: slot_definition domain_of: - slot_definition range: boolean reflexive: name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive owner: slot_definition domain_of: - slot_definition range: boolean locally_reflexive: name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive owner: slot_definition domain_of: - slot_definition range: boolean irreflexive: name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive owner: slot_definition domain_of: - slot_definition range: boolean asymmetric: name: asymmetric description: If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have value i comments: - asymmetry is the combination of antisymmetry and irreflexivity in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:AsymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: asymmetric owner: slot_definition domain_of: - slot_definition range: boolean transitive: name: transitive description: If s is transitive, and i.s=z, and s.s=j, then i.s=j in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:TransitiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: transitive owner: slot_definition domain_of: - slot_definition range: boolean inverse: name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse owner: slot_definition domain_of: - slot_definition range: slot_definition is_class_field: name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field owner: slot_definition domain_of: - slot_definition range: boolean transitive_form_of: name: transitive_form_of description: If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transitive (3) d holds whenever s holds and there are no intermediates, and s is not reflexive comments: - '{''Example'': ''ancestor_of is the transitive_form_of parent_of''}' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition reflexive_transitive_form_of: name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition role: name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role owner: slot_definition domain_of: - slot_definition range: string is_usage_slot: name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot owner: slot_definition domain_of: - slot_definition range: boolean usage_slot_name: name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name owner: slot_definition domain_of: - slot_definition range: string relational_role: name: relational_role description: the role a slot on a relationship class plays, for example, the subject, object or predicate roles comments: - this should only be used on slots that are applicable to class that represent relationships - in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary - in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes from_schema: https://w3id.org/linkml/meta aliases: - reification_role rank: 1000 status: testing domain: slot_definition inherited: true alias: relational_role owner: slot_definition domain_of: - slot_definition range: relational_role_enum slot_group: name: slot_group description: allows for grouping of related slots into a grouping slot that serves the role of a group in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: sh:group alias: slot_group owner: slot_definition domain_of: - slot_definition range: slot_definition range_expression: slot_conditions: is_grouping_slot: name: is_grouping_slot equals_expression: 'True' is_grouping_slot: name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot owner: slot_definition domain_of: - slot_definition range: boolean path_rule: name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule owner: slot_definition domain_of: - slot_definition range: path_expression disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: slot_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: slot_definition domain_of: - slot_definition - class_definition range: boolean union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: slot_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_definition domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_definition domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_definition domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_definition domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_definition domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_definition domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_definition domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_definition domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_definition domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_definition domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_definition domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_definition domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_definition domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: slot_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: slot_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: slot_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: slot_definition domain_of: - definition - definition range: slot_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: slot_definition domain_of: - definition - definition range: slot_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: slot_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: slot_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: slot_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: slot_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: slot_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: slot_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: slot_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: slot_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: slot_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: slot_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: slot_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: slot_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: slot_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: slot_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: slot_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: slot_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: slot_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: slot_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: slot_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: slot_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: slot_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: slot_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: slot_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: slot_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: slot_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: slot_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: slot_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: slot_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: slot_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: slot_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: slot_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: SlotDefinition"},{"location":"SlotDefinition/#class-slotdefinition","text":"an element that describes how instances are related to other instances URI: linkml:SlotDefinition classDiagram class SlotDefinition SlotExpression <|-- SlotDefinition Definition <|-- SlotDefinition SlotDefinition : abstract SlotDefinition : alias SlotDefinition : aliases SlotDefinition : all_members SlotDefinition : all_of SlotDefinition : alt_descriptions SlotDefinition : annotations SlotDefinition : any_of SlotDefinition : apply_to SlotDefinition : asymmetric SlotDefinition : broad_mappings SlotDefinition : children_are_mutually_disjoint SlotDefinition : close_mappings SlotDefinition : comments SlotDefinition : conforms_to SlotDefinition : created_by SlotDefinition : created_on SlotDefinition : definition_uri SlotDefinition : deprecated SlotDefinition : deprecated_element_has_exact_replacement SlotDefinition : deprecated_element_has_possible_replacement SlotDefinition : description SlotDefinition : designates_type SlotDefinition : disjoint_with SlotDefinition : domain SlotDefinition : domain_of SlotDefinition : enum_range SlotDefinition : equals_expression SlotDefinition : equals_number SlotDefinition : equals_string SlotDefinition : equals_string_in SlotDefinition : exact_mappings SlotDefinition : exactly_one_of SlotDefinition : examples SlotDefinition : extensions SlotDefinition : from_schema SlotDefinition : has_member SlotDefinition : id_prefixes SlotDefinition : identifier SlotDefinition : ifabsent SlotDefinition : implicit_prefix SlotDefinition : imported_from SlotDefinition : in_language SlotDefinition : in_subset SlotDefinition : inherited SlotDefinition : inlined SlotDefinition : inlined_as_list SlotDefinition : inverse SlotDefinition : irreflexive SlotDefinition : is_a SlotDefinition : is_class_field SlotDefinition : is_grouping_slot SlotDefinition : is_usage_slot SlotDefinition : key SlotDefinition : last_updated_on SlotDefinition : list_elements_ordered SlotDefinition : list_elements_unique SlotDefinition : local_names SlotDefinition : locally_reflexive SlotDefinition : mappings SlotDefinition : maximum_cardinality SlotDefinition : maximum_value SlotDefinition : minimum_cardinality SlotDefinition : minimum_value SlotDefinition : mixin SlotDefinition : mixins SlotDefinition : modified_by SlotDefinition : multivalued SlotDefinition : name SlotDefinition : narrow_mappings SlotDefinition : none_of SlotDefinition : notes SlotDefinition : owner SlotDefinition : path_rule SlotDefinition : pattern SlotDefinition : range SlotDefinition : range_expression SlotDefinition : rank SlotDefinition : readonly SlotDefinition : recommended SlotDefinition : reflexive SlotDefinition : reflexive_transitive_form_of SlotDefinition : related_mappings SlotDefinition : relational_role SlotDefinition : required SlotDefinition : role SlotDefinition : see_also SlotDefinition : shared SlotDefinition : singular_name SlotDefinition : slot_group SlotDefinition : slot_uri SlotDefinition : source SlotDefinition : status SlotDefinition : string_serialization SlotDefinition : structured_aliases SlotDefinition : structured_pattern SlotDefinition : subproperty_of SlotDefinition : symmetric SlotDefinition : title SlotDefinition : todos SlotDefinition : transitive SlotDefinition : transitive_form_of SlotDefinition : union_of SlotDefinition : unit SlotDefinition : usage_slot_name SlotDefinition : value_presence SlotDefinition : values_from","title":"Class: SlotDefinition"},{"location":"SlotDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition SlotDefinition [ SlotExpression ]","title":"Inheritance"},{"location":"SlotDefinition/#slots","text":"Name Cardinality and Range Description Inheritance singular_name 0..1 NONE a name that is used in the singular form direct domain 0..1 ClassDefinition defines the type of the subject of the slot direct slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application direct multivalued 0..1 Boolean true means that slot can have more than one value direct inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses direct readonly 0..1 String If present, slot is read only direct ifabsent 0..1 String function that provides a default value for the slot direct list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... direct list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... direct shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... direct key 0..1 Boolean True means that the key slot(s) uniquely identify the container direct identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container direct designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... direct alias 0..1 String the name used for a slot in the context of its owning class direct owner 0..1 Definition the \"owner\" of the slot direct domain_of 0..* ClassDefinition the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context direct subproperty_of 0..1 SlotDefinition Ontology property which this slot is a subproperty of direct symmetric 0..1 NONE If s is symmetric, and i direct reflexive 0..1 NONE If s is reflexive, then i direct locally_reflexive 0..1 NONE If s is locally_reflexive, then i direct irreflexive 0..1 NONE If s is irreflexive, then there exists no i such i direct asymmetric 0..1 NONE If s is antisymmetric, and i direct transitive 0..1 NONE If s is transitive, and i direct inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... direct is_class_field 0..1 Boolean indicates that for any instance, i, the domain of this slot will include an a... direct transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... direct reflexive_transitive_form_of 0..1 NONE transitive_form_of including the reflexive case direct role 0..1 String a textual descriptor that indicates the role played by the slot range direct is_usage_slot 0..1 Boolean True means that this slot was defined in a slot_usage situation direct usage_slot_name 0..1 String The name of the slot referenced in the slot_usage direct relational_role 0..1 RelationalRoleEnum the role a slot on a relationship class plays, for example, the subject, obje... direct slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... direct is_grouping_slot 0..1 Boolean true if this slot is a grouping slot direct path_rule 0..1 PathExpression a rule for inferring a slot assignment based on evaluating a path through a s... direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata status 0..1 Uriorcurie status of the element Definition equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata last_updated_on 0..1 Datetime time at which the element was last updated Definition see_also 0..* Uriorcurie a reference CommonMetadata equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata created_on 0..1 Datetime time at which the element was created Definition any_of 0..1 Expression holds if at least one of the expressions hold SlotExpression id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression aliases 0..* String Alaternate names for the element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression name 1..1 NONE the unique name of the element within the context of the schema Element unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition range 0..1 Element defines the type of the object of the slot SlotExpression exactly_one_of 0..1 Expression holds if only one of the expressions hold SlotExpression in_language 0..1 String CommonMetadata inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata modified_by 0..1 Uriorcurie agent that modified the element Definition in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression all_of 0..1 Expression holds if all of the expressions hold SlotExpression required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression none_of 0..1 Expression holds if none of the expressions hold SlotExpression created_by 0..1 Uriorcurie agent that created the element Definition rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"SlotDefinition/#usages","text":"used by used in type used SchemaDefinition slot_definitions range SlotDefinition TypeExpression minimum_value domain SlotDefinition TypeExpression maximum_value domain SlotDefinition AnonymousTypeExpression minimum_value domain SlotDefinition AnonymousTypeExpression maximum_value domain SlotDefinition TypeDefinition minimum_value domain SlotDefinition TypeDefinition maximum_value domain SlotDefinition PathExpression traverse range SlotDefinition SlotExpression range domain SlotDefinition SlotExpression required domain SlotDefinition SlotExpression recommended domain SlotDefinition SlotExpression inlined domain SlotDefinition SlotExpression inlined_as_list domain SlotDefinition SlotExpression minimum_value domain SlotDefinition SlotExpression maximum_value domain SlotDefinition SlotExpression value_presence domain SlotDefinition AnonymousSlotExpression range domain SlotDefinition AnonymousSlotExpression required domain SlotDefinition AnonymousSlotExpression recommended domain SlotDefinition AnonymousSlotExpression inlined domain SlotDefinition AnonymousSlotExpression inlined_as_list domain SlotDefinition AnonymousSlotExpression minimum_value domain SlotDefinition AnonymousSlotExpression maximum_value domain SlotDefinition AnonymousSlotExpression value_presence domain SlotDefinition SlotDefinition singular_name domain SlotDefinition SlotDefinition domain domain SlotDefinition SlotDefinition slot_uri domain SlotDefinition SlotDefinition multivalued domain SlotDefinition SlotDefinition inherited domain SlotDefinition SlotDefinition readonly domain SlotDefinition SlotDefinition ifabsent domain SlotDefinition SlotDefinition list_elements_unique domain SlotDefinition SlotDefinition list_elements_ordered domain SlotDefinition SlotDefinition shared domain SlotDefinition SlotDefinition key domain SlotDefinition SlotDefinition identifier domain SlotDefinition SlotDefinition designates_type domain SlotDefinition SlotDefinition alias domain SlotDefinition SlotDefinition owner domain SlotDefinition SlotDefinition domain_of domain SlotDefinition SlotDefinition subproperty_of domain SlotDefinition SlotDefinition subproperty_of range SlotDefinition SlotDefinition symmetric domain SlotDefinition SlotDefinition reflexive domain SlotDefinition SlotDefinition locally_reflexive domain SlotDefinition SlotDefinition irreflexive domain SlotDefinition SlotDefinition asymmetric domain SlotDefinition SlotDefinition transitive domain SlotDefinition SlotDefinition inverse domain SlotDefinition SlotDefinition inverse range SlotDefinition SlotDefinition is_class_field domain SlotDefinition SlotDefinition transitive_form_of range SlotDefinition SlotDefinition reflexive_transitive_form_of range SlotDefinition SlotDefinition role domain SlotDefinition SlotDefinition is_usage_slot domain SlotDefinition SlotDefinition usage_slot_name domain SlotDefinition SlotDefinition relational_role domain SlotDefinition SlotDefinition slot_group domain SlotDefinition SlotDefinition slot_group range SlotDefinition SlotDefinition is_grouping_slot domain SlotDefinition SlotDefinition path_rule domain SlotDefinition SlotDefinition disjoint_with range SlotDefinition SlotDefinition union_of range SlotDefinition SlotDefinition range domain SlotDefinition SlotDefinition required domain SlotDefinition SlotDefinition recommended domain SlotDefinition SlotDefinition inlined domain SlotDefinition SlotDefinition inlined_as_list domain SlotDefinition SlotDefinition minimum_value domain SlotDefinition SlotDefinition maximum_value domain SlotDefinition SlotDefinition value_presence domain SlotDefinition SlotDefinition is_a range SlotDefinition SlotDefinition mixins range SlotDefinition SlotDefinition apply_to range SlotDefinition ClassExpression slot_conditions range SlotDefinition AnonymousClassExpression slot_conditions range SlotDefinition ClassDefinition slots range SlotDefinition ClassDefinition slot_usage range SlotDefinition ClassDefinition attributes range SlotDefinition ClassDefinition defining_slots range SlotDefinition ClassDefinition slot_conditions range SlotDefinition UniqueKey unique_key_slots range SlotDefinition","title":"Usages"},{"location":"SlotDefinition/#aliases","text":"slot field property attribute column variable","title":"Aliases"},{"location":"SlotDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SlotDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SlotDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:SlotDefinition native linkml:SlotDefinition close rdf:Property, qb:ComponentProperty","title":"Mappings"},{"location":"SlotDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"SlotDefinition/#direct","text":"name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slots: - singular_name - domain - slot_uri - multivalued - inherited - readonly - ifabsent - list_elements_unique - list_elements_ordered - shared - key - identifier - designates_type - alias - owner - domain_of - subproperty_of - symmetric - reflexive - locally_reflexive - irreflexive - asymmetric - transitive - inverse - is_class_field - transitive_form_of - reflexive_transitive_form_of - role - is_usage_slot - usage_slot_name - relational_role - slot_group - is_grouping_slot - path_rule - disjoint_with - children_are_mutually_disjoint - union_of slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition","title":"Direct"},{"location":"SlotDefinition/#induced","text":"name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition attributes: singular_name: name: singular_name description: a name that is used in the singular form in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: skos:altLabel alias: singular_name owner: slot_definition domain_of: - slot_definition range: string domain: name: domain description: \"defines the type of the subject of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain owner: slot_definition domain_of: - slot_definition range: class_definition slot_uri: name: slot_uri description: predicate of this slot for semantic web application in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: slot_definition ifabsent: slot_curie alias: slot_uri owner: slot_definition domain_of: - slot_definition range: uriorcurie multivalued: name: multivalued description: true means that slot can have more than one value in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 7 domain: slot_definition inherited: true alias: multivalued owner: slot_definition domain_of: - slot_definition range: boolean inherited: name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited owner: slot_definition domain_of: - slot_definition range: boolean readonly: name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly owner: slot_definition domain_of: - slot_definition range: string ifabsent: name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value)\\ \\ -- integer value\\n * str(value) -- string value\\n * default_range -- schema\\ \\ default range\\n * bnode -- blank node identifier\\n * slot_uri -- URI for\\ \\ the slot\\n * class_curie -- CURIE for the containing class\\n * class_uri\\ \\ -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent owner: slot_definition domain_of: - slot_definition range: string list_elements_unique: name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique owner: slot_definition domain_of: - slot_definition range: boolean list_elements_ordered: name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered owner: slot_definition domain_of: - slot_definition range: boolean shared: name: shared description: If True, then the relationship between the slot domain and range is many to one or many to many in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - inverse functional - many to one or many rank: 1000 domain: slot_definition inherited: true alias: shared owner: slot_definition domain_of: - slot_definition range: boolean key: name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. Keys cannot be optional in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: key owner: slot_definition domain_of: - slot_definition range: boolean identifier: name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier owner: slot_definition domain_of: - slot_definition range: boolean designates_type: name: designates_type description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - type designator rank: 1000 domain: slot_definition inherited: true alias: designates_type owner: slot_definition domain_of: - slot_definition range: boolean alias: name: alias description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 6 domain: slot_definition slot_uri: skos:prefLabel alias: alias owner: slot_definition domain_of: - slot_definition range: string owner: name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner owner: slot_definition domain_of: - slot_definition range: definition domain_of: name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of owner: slot_definition domain_of: - slot_definition range: class_definition subproperty_of: name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of owner: slot_definition domain_of: - slot_definition range: slot_definition symmetric: name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric owner: slot_definition domain_of: - slot_definition range: boolean reflexive: name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive owner: slot_definition domain_of: - slot_definition range: boolean locally_reflexive: name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive owner: slot_definition domain_of: - slot_definition range: boolean irreflexive: name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive owner: slot_definition domain_of: - slot_definition range: boolean asymmetric: name: asymmetric description: If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have value i comments: - asymmetry is the combination of antisymmetry and irreflexivity in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:AsymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: asymmetric owner: slot_definition domain_of: - slot_definition range: boolean transitive: name: transitive description: If s is transitive, and i.s=z, and s.s=j, then i.s=j in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:TransitiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: transitive owner: slot_definition domain_of: - slot_definition range: boolean inverse: name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse owner: slot_definition domain_of: - slot_definition range: slot_definition is_class_field: name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field owner: slot_definition domain_of: - slot_definition range: boolean transitive_form_of: name: transitive_form_of description: If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transitive (3) d holds whenever s holds and there are no intermediates, and s is not reflexive comments: - '{''Example'': ''ancestor_of is the transitive_form_of parent_of''}' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition reflexive_transitive_form_of: name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition role: name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role owner: slot_definition domain_of: - slot_definition range: string is_usage_slot: name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot owner: slot_definition domain_of: - slot_definition range: boolean usage_slot_name: name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name owner: slot_definition domain_of: - slot_definition range: string relational_role: name: relational_role description: the role a slot on a relationship class plays, for example, the subject, object or predicate roles comments: - this should only be used on slots that are applicable to class that represent relationships - in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary - in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes from_schema: https://w3id.org/linkml/meta aliases: - reification_role rank: 1000 status: testing domain: slot_definition inherited: true alias: relational_role owner: slot_definition domain_of: - slot_definition range: relational_role_enum slot_group: name: slot_group description: allows for grouping of related slots into a grouping slot that serves the role of a group in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: sh:group alias: slot_group owner: slot_definition domain_of: - slot_definition range: slot_definition range_expression: slot_conditions: is_grouping_slot: name: is_grouping_slot equals_expression: 'True' is_grouping_slot: name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot owner: slot_definition domain_of: - slot_definition range: boolean path_rule: name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule owner: slot_definition domain_of: - slot_definition range: path_expression disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: slot_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: slot_definition domain_of: - slot_definition - class_definition range: boolean union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: slot_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_definition domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_definition domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_definition domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_definition domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_definition domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_definition domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_definition domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_definition domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_definition domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_definition domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_definition domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_definition domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_definition domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: slot_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: slot_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: slot_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: slot_definition domain_of: - definition - definition range: slot_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: slot_definition domain_of: - definition - definition range: slot_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: slot_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: slot_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: slot_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: slot_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: slot_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: slot_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: slot_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: slot_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: slot_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: slot_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: slot_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: slot_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: slot_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: slot_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: slot_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: slot_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: slot_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: slot_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: slot_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: slot_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: slot_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: slot_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: slot_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: slot_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: slot_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: slot_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: slot_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: slot_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: slot_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: slot_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: slot_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"SlotExpression/","text":"Class: SlotExpression an expression that constrains the range of values a slot can take URI: linkml:SlotExpression classDiagram class SlotExpression Expression <|-- SlotExpression SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence SlotExpression <|-- AnonymousSlotExpression SlotExpression <|-- SlotDefinition SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence Inheritance Expression SlotExpression Slots Name Cardinality and Range Description Inheritance range 0..1 Element defines the type of the object of the slot direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct enum_range 0..1 EnumExpression An inlined enumeration direct required 0..1 Boolean true means that the slot must be present in the loaded definition direct recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... direct inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... direct inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression direct minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot direct maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot direct has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... direct all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... direct none_of 0..1 Expression holds if none of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct any_of 0..1 Expression holds if at least one of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct Mixin Usage mixed into description AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Usages used by used in type used TypeExpression implicit_prefix domain SlotExpression AnonymousTypeExpression implicit_prefix domain SlotExpression TypeDefinition implicit_prefix domain SlotExpression PathExpression range_expression domain SlotExpression SlotExpression range_expression domain SlotExpression SlotExpression implicit_prefix domain SlotExpression AnonymousSlotExpression range_expression domain SlotExpression AnonymousSlotExpression implicit_prefix domain SlotExpression SlotDefinition range_expression domain SlotExpression SlotDefinition implicit_prefix domain SlotExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SlotExpression native linkml:SlotExpression LinkML Source Direct name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slots: - range - range_expression - enum_range - required - recommended - inlined - inlined_as_list - minimum_value - maximum_value - pattern - structured_pattern - unit - implicit_prefix - value_presence - equals_string - equals_string_in - equals_number - equals_expression - minimum_cardinality - maximum_cardinality - has_member - all_members - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression Induced name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression","title":"Class: SlotExpression"},{"location":"SlotExpression/#class-slotexpression","text":"an expression that constrains the range of values a slot can take URI: linkml:SlotExpression classDiagram class SlotExpression Expression <|-- SlotExpression SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence SlotExpression <|-- AnonymousSlotExpression SlotExpression <|-- SlotDefinition SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence","title":"Class: SlotExpression"},{"location":"SlotExpression/#inheritance","text":"Expression SlotExpression","title":"Inheritance"},{"location":"SlotExpression/#slots","text":"Name Cardinality and Range Description Inheritance range 0..1 Element defines the type of the object of the slot direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct enum_range 0..1 EnumExpression An inlined enumeration direct required 0..1 Boolean true means that the slot must be present in the loaded definition direct recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... direct inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... direct inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression direct minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot direct maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot direct has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... direct all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... direct none_of 0..1 Expression holds if none of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct any_of 0..1 Expression holds if at least one of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct","title":"Slots"},{"location":"SlotExpression/#mixin-usage","text":"mixed into description AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Mixin Usage"},{"location":"SlotExpression/#usages","text":"used by used in type used TypeExpression implicit_prefix domain SlotExpression AnonymousTypeExpression implicit_prefix domain SlotExpression TypeDefinition implicit_prefix domain SlotExpression PathExpression range_expression domain SlotExpression SlotExpression range_expression domain SlotExpression SlotExpression implicit_prefix domain SlotExpression AnonymousSlotExpression range_expression domain SlotExpression AnonymousSlotExpression implicit_prefix domain SlotExpression SlotDefinition range_expression domain SlotExpression SlotDefinition implicit_prefix domain SlotExpression","title":"Usages"},{"location":"SlotExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SlotExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SlotExpression/#mappings","text":"Mapping Type Mapped Value self linkml:SlotExpression native linkml:SlotExpression","title":"Mappings"},{"location":"SlotExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"SlotExpression/#direct","text":"name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slots: - range - range_expression - enum_range - required - recommended - inlined - inlined_as_list - minimum_value - maximum_value - pattern - structured_pattern - unit - implicit_prefix - value_presence - equals_string - equals_string_in - equals_number - equals_expression - minimum_cardinality - maximum_cardinality - has_member - all_members - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression","title":"Direct"},{"location":"SlotExpression/#induced","text":"name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression","title":"Induced"},{"location":"SpecificationSubset/","text":"Subset: SpecificationSubset _A subset that includes all the metamodel elements that form part of the normative LinkML specification. The complete LinkML specification can be found at linkml:specification _ URI: SpecificationSubset Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... ClassRule A rule that applies to instances of a class Setting assignment of a key to a value SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* Uriorcurie other schemas that are included in this schema rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element ClassDefinition an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 Boolean indicator that this is the root class in tree structures rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element SlotDefinition an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container alias 0..1 String the name used for a slot in the context of its owning class multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 String function that provides a default value for the slot list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 Boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 Boolean If s is symmetric, and i reflexive 0..1 Boolean If s is reflexive, then i locally_reflexive 0..1 Boolean If s is locally_reflexive, then i irreflexive 0..1 Boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 Boolean If s is antisymmetric, and i transitive 0..1 Boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 Boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* SlotDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element TypeDefinition an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 String python base type that implements this type definition repr 0..1 String the name of the python object that implements this type definition pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element EnumDefinition an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element SubsetDefinition an element that can be used to group other metamodel elements Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element Prefix prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) prefix_reference 1..1 Uri A URI associated with a given prefix PermissibleValue a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description text 1..1 String identifier meaning 0..1 Uriorcurie the value meaning of a permissible value rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... from_schema 0..1 Uri id of the schema that defined the element UniqueKey a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key from_schema 0..1 Uri id of the schema that defined the element MatchQuery A query that is used on an enum expression to dynamically obtain a set of permissivle values via a query that matches on properties of the external concepts Name Cardinality and Range Description identifier_pattern 0..1 String A regular expression that is used to obtain a set of identifiers from a sourc... source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types Name Cardinality and Range Description source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... include_self 0..1 Boolean True if the query is reflexive traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are... ClassRule A rule that applies to instances of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... bidirectional 0..1 Boolean in addition to preconditions entailing postconditions, the postconditions ent... open_world 0..1 Boolean if true, the the postconditions may be omitted in instance data, but it is va... from_schema 0..1 Uri id of the schema that defined the element Setting assignment of a key to a value Name Cardinality and Range Description setting_key 0..1 Ncname the variable name for a setting setting_value 1..1 String The value assigned for a setting Slots in subset Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class settings A collection of global variable settings text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... any_of holds if at least one of the expressions hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... from_schema id of the schema that defined the element abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... code_set the identifier of an enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string the slot must have range string and the value of the slot must equal the spec... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... interpolated if true then the pattern is first string interpolated partial_match if true then the pattern must match the whole string, as if enclosed in ^ syntax the string value of the slot must conform to this regular expression expresse... structured_pattern the string value of the slot must conform to the regular expression in the pa... string_serialization Used on a slot that stores the string serialization of the containing object setting_key the variable name for a setting setting_value The value assigned for a setting slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot Enumerations in subset Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"SpecificationSubset"},{"location":"SpecificationSubset/#subset-specificationsubset","text":"_A subset that includes all the metamodel elements that form part of the normative LinkML specification. The complete LinkML specification can be found at linkml:specification _ URI: SpecificationSubset","title":"Subset: SpecificationSubset"},{"location":"SpecificationSubset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SpecificationSubset/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SpecificationSubset/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... ClassRule A rule that applies to instances of a class Setting assignment of a key to a value","title":"Classes in subset"},{"location":"SpecificationSubset/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* Uriorcurie other schemas that are included in this schema rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"SchemaDefinition"},{"location":"SpecificationSubset/#classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 Boolean indicator that this is the root class in tree structures rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"ClassDefinition"},{"location":"SpecificationSubset/#slotdefinition","text":"an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container alias 0..1 String the name used for a slot in the context of its owning class multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 String function that provides a default value for the slot list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 Boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 Boolean If s is symmetric, and i reflexive 0..1 Boolean If s is reflexive, then i locally_reflexive 0..1 Boolean If s is locally_reflexive, then i irreflexive 0..1 Boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 Boolean If s is antisymmetric, and i transitive 0..1 Boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 Boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* SlotDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"SlotDefinition"},{"location":"SpecificationSubset/#typedefinition","text":"an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 String python base type that implements this type definition repr 0..1 String the name of the python object that implements this type definition pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"TypeDefinition"},{"location":"SpecificationSubset/#enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"EnumDefinition"},{"location":"SpecificationSubset/#subsetdefinition","text":"an element that can be used to group other metamodel elements Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"SubsetDefinition"},{"location":"SpecificationSubset/#prefix","text":"prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) prefix_reference 1..1 Uri A URI associated with a given prefix","title":"Prefix"},{"location":"SpecificationSubset/#permissiblevalue","text":"a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description text 1..1 String identifier meaning 0..1 Uriorcurie the value meaning of a permissible value rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... from_schema 0..1 Uri id of the schema that defined the element","title":"PermissibleValue"},{"location":"SpecificationSubset/#uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key from_schema 0..1 Uri id of the schema that defined the element","title":"UniqueKey"},{"location":"SpecificationSubset/#matchquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissivle values via a query that matches on properties of the external concepts Name Cardinality and Range Description identifier_pattern 0..1 String A regular expression that is used to obtain a set of identifiers from a sourc... source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ...","title":"MatchQuery"},{"location":"SpecificationSubset/#reachabilityquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types Name Cardinality and Range Description source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... include_self 0..1 Boolean True if the query is reflexive traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are...","title":"ReachabilityQuery"},{"location":"SpecificationSubset/#classrule","text":"A rule that applies to instances of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... bidirectional 0..1 Boolean in addition to preconditions entailing postconditions, the postconditions ent... open_world 0..1 Boolean if true, the the postconditions may be omitted in instance data, but it is va... from_schema 0..1 Uri id of the schema that defined the element","title":"ClassRule"},{"location":"SpecificationSubset/#setting","text":"assignment of a key to a value Name Cardinality and Range Description setting_key 0..1 Ncname the variable name for a setting setting_value 1..1 String The value assigned for a setting","title":"Setting"},{"location":"SpecificationSubset/#slots-in-subset","text":"Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class settings A collection of global variable settings text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... any_of holds if at least one of the expressions hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... from_schema id of the schema that defined the element abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... code_set the identifier of an enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string the slot must have range string and the value of the slot must equal the spec... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... interpolated if true then the pattern is first string interpolated partial_match if true then the pattern must match the whole string, as if enclosed in ^ syntax the string value of the slot must conform to this regular expression expresse... structured_pattern the string value of the slot must conform to the regular expression in the pa... string_serialization Used on a slot that stores the string serialization of the containing object setting_key the variable name for a setting setting_value The value assigned for a setting slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot","title":"Slots in subset"},{"location":"SpecificationSubset/#enumerations-in-subset","text":"Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"Enumerations in subset"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"StructuredAlias/","text":"Class: StructuredAlias object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) URI: skosxl:Label classDiagram class StructuredAlias Expression <|-- StructuredAlias Extensible <|-- StructuredAlias Annotatable <|-- StructuredAlias CommonMetadata <|-- StructuredAlias StructuredAlias : alias_predicate StructuredAlias : aliases StructuredAlias : alt_descriptions StructuredAlias : annotations StructuredAlias : broad_mappings StructuredAlias : categories StructuredAlias : close_mappings StructuredAlias : comments StructuredAlias : deprecated StructuredAlias : deprecated_element_has_exact_replacement StructuredAlias : deprecated_element_has_possible_replacement StructuredAlias : description StructuredAlias : exact_mappings StructuredAlias : examples StructuredAlias : extensions StructuredAlias : from_schema StructuredAlias : imported_from StructuredAlias : in_language StructuredAlias : in_subset StructuredAlias : literal_form StructuredAlias : mappings StructuredAlias : narrow_mappings StructuredAlias : notes StructuredAlias : rank StructuredAlias : related_mappings StructuredAlias : see_also StructuredAlias : source StructuredAlias : structured_aliases StructuredAlias : title StructuredAlias : todos Inheritance StructuredAlias [ Expression Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance literal_form 1..1 String The literal lexical form of a structured alias direct alias_predicate 0..1 recommended AliasPredicateEnum The relationship between an element and its alias direct categories 0..* Uriorcurie controlled terms used to categorize an element direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used CommonMetadata structured_aliases range StructuredAlias Element structured_aliases range StructuredAlias SchemaDefinition structured_aliases range StructuredAlias TypeDefinition structured_aliases range StructuredAlias SubsetDefinition structured_aliases range StructuredAlias Definition structured_aliases range StructuredAlias EnumDefinition structured_aliases range StructuredAlias StructuredAlias literal_form domain StructuredAlias StructuredAlias alias_predicate domain StructuredAlias StructuredAlias structured_aliases range StructuredAlias AnonymousExpression structured_aliases range StructuredAlias PathExpression structured_aliases range StructuredAlias AnonymousSlotExpression structured_aliases range StructuredAlias SlotDefinition structured_aliases range StructuredAlias AnonymousClassExpression structured_aliases range StructuredAlias ClassDefinition structured_aliases range StructuredAlias ClassRule structured_aliases range StructuredAlias PatternExpression structured_aliases range StructuredAlias ImportExpression structured_aliases range StructuredAlias PermissibleValue structured_aliases range StructuredAlias UniqueKey structured_aliases range StructuredAlias Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self skosxl:Label native linkml:StructuredAlias LinkML Source Direct name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slots: - literal_form - alias_predicate - categories slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias class_uri: skosxl:Label Induced name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias attributes: literal_form: name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form owner: structured_alias domain_of: - structured_alias range: string required: true alias_predicate: name: alias_predicate description: 'The relationship between an element and its alias ' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: structured_alias slot_uri: rdf:predicate alias: predicate owner: structured_alias domain_of: - structured_alias range: alias_predicate_enum recommended: true categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: structured_alias domain_of: - schema_definition - structured_alias - schema_definition - structured_alias range: uriorcurie extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: structured_alias domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: structured_alias domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: structured_alias domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: structured_alias domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: structured_alias domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: structured_alias domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: structured_alias domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: structured_alias domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: structured_alias domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: structured_alias domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: structured_alias domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: structured_alias domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: structured_alias domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: structured_alias domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: structured_alias domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: structured_alias domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: structured_alias domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: structured_alias domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: structured_alias domain_of: - common_metadata - class_rule range: integer class_uri: skosxl:Label","title":"Class: StructuredAlias"},{"location":"StructuredAlias/#class-structuredalias","text":"object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) URI: skosxl:Label classDiagram class StructuredAlias Expression <|-- StructuredAlias Extensible <|-- StructuredAlias Annotatable <|-- StructuredAlias CommonMetadata <|-- StructuredAlias StructuredAlias : alias_predicate StructuredAlias : aliases StructuredAlias : alt_descriptions StructuredAlias : annotations StructuredAlias : broad_mappings StructuredAlias : categories StructuredAlias : close_mappings StructuredAlias : comments StructuredAlias : deprecated StructuredAlias : deprecated_element_has_exact_replacement StructuredAlias : deprecated_element_has_possible_replacement StructuredAlias : description StructuredAlias : exact_mappings StructuredAlias : examples StructuredAlias : extensions StructuredAlias : from_schema StructuredAlias : imported_from StructuredAlias : in_language StructuredAlias : in_subset StructuredAlias : literal_form StructuredAlias : mappings StructuredAlias : narrow_mappings StructuredAlias : notes StructuredAlias : rank StructuredAlias : related_mappings StructuredAlias : see_also StructuredAlias : source StructuredAlias : structured_aliases StructuredAlias : title StructuredAlias : todos","title":"Class: StructuredAlias"},{"location":"StructuredAlias/#inheritance","text":"StructuredAlias [ Expression Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"StructuredAlias/#slots","text":"Name Cardinality and Range Description Inheritance literal_form 1..1 String The literal lexical form of a structured alias direct alias_predicate 0..1 recommended AliasPredicateEnum The relationship between an element and its alias direct categories 0..* Uriorcurie controlled terms used to categorize an element direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"StructuredAlias/#usages","text":"used by used in type used CommonMetadata structured_aliases range StructuredAlias Element structured_aliases range StructuredAlias SchemaDefinition structured_aliases range StructuredAlias TypeDefinition structured_aliases range StructuredAlias SubsetDefinition structured_aliases range StructuredAlias Definition structured_aliases range StructuredAlias EnumDefinition structured_aliases range StructuredAlias StructuredAlias literal_form domain StructuredAlias StructuredAlias alias_predicate domain StructuredAlias StructuredAlias structured_aliases range StructuredAlias AnonymousExpression structured_aliases range StructuredAlias PathExpression structured_aliases range StructuredAlias AnonymousSlotExpression structured_aliases range StructuredAlias SlotDefinition structured_aliases range StructuredAlias AnonymousClassExpression structured_aliases range StructuredAlias ClassDefinition structured_aliases range StructuredAlias ClassRule structured_aliases range StructuredAlias PatternExpression structured_aliases range StructuredAlias ImportExpression structured_aliases range StructuredAlias PermissibleValue structured_aliases range StructuredAlias UniqueKey structured_aliases range StructuredAlias","title":"Usages"},{"location":"StructuredAlias/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"StructuredAlias/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"StructuredAlias/#mappings","text":"Mapping Type Mapped Value self skosxl:Label native linkml:StructuredAlias","title":"Mappings"},{"location":"StructuredAlias/#linkml-source","text":"","title":"LinkML Source"},{"location":"StructuredAlias/#direct","text":"name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slots: - literal_form - alias_predicate - categories slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias class_uri: skosxl:Label","title":"Direct"},{"location":"StructuredAlias/#induced","text":"name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias attributes: literal_form: name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form owner: structured_alias domain_of: - structured_alias range: string required: true alias_predicate: name: alias_predicate description: 'The relationship between an element and its alias ' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: structured_alias slot_uri: rdf:predicate alias: predicate owner: structured_alias domain_of: - structured_alias range: alias_predicate_enum recommended: true categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: structured_alias domain_of: - schema_definition - structured_alias - schema_definition - structured_alias range: uriorcurie extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: structured_alias domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: structured_alias domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: structured_alias domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: structured_alias domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: structured_alias domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: structured_alias domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: structured_alias domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: structured_alias domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: structured_alias domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: structured_alias domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: structured_alias domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: structured_alias domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: structured_alias domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: structured_alias domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: structured_alias domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: structured_alias domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: structured_alias domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: structured_alias domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: structured_alias domain_of: - common_metadata - class_rule range: integer class_uri: skosxl:Label","title":"Induced"},{"location":"SubsetDefinition/","text":"Class: SubsetDefinition an element that can be used to group other metamodel elements URI: linkml:SubsetDefinition classDiagram class SubsetDefinition Element <|-- SubsetDefinition SubsetDefinition : aliases SubsetDefinition : alt_descriptions SubsetDefinition : annotations SubsetDefinition : broad_mappings SubsetDefinition : close_mappings SubsetDefinition : comments SubsetDefinition : conforms_to SubsetDefinition : definition_uri SubsetDefinition : deprecated SubsetDefinition : deprecated_element_has_exact_replacement SubsetDefinition : deprecated_element_has_possible_replacement SubsetDefinition : description SubsetDefinition : exact_mappings SubsetDefinition : examples SubsetDefinition : extensions SubsetDefinition : from_schema SubsetDefinition : id_prefixes SubsetDefinition : imported_from SubsetDefinition : in_language SubsetDefinition : in_subset SubsetDefinition : local_names SubsetDefinition : mappings SubsetDefinition : name SubsetDefinition : narrow_mappings SubsetDefinition : notes SubsetDefinition : rank SubsetDefinition : related_mappings SubsetDefinition : see_also SubsetDefinition : source SubsetDefinition : structured_aliases SubsetDefinition : title SubsetDefinition : todos Inheritance Element [ Extensible Annotatable CommonMetadata ] SubsetDefinition Slots Name Cardinality and Range Description Inheritance in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element name 1..1 NONE the unique name of the element within the context of the schema Element rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used CommonMetadata in_subset range SubsetDefinition Element in_subset range SubsetDefinition SchemaDefinition subsets range SubsetDefinition SchemaDefinition in_subset range SubsetDefinition TypeDefinition in_subset range SubsetDefinition SubsetDefinition in_subset range SubsetDefinition Definition in_subset range SubsetDefinition EnumDefinition in_subset range SubsetDefinition StructuredAlias in_subset range SubsetDefinition AnonymousExpression in_subset range SubsetDefinition PathExpression in_subset range SubsetDefinition AnonymousSlotExpression in_subset range SubsetDefinition SlotDefinition in_subset range SubsetDefinition AnonymousClassExpression in_subset range SubsetDefinition ClassDefinition in_subset range SubsetDefinition ClassRule in_subset range SubsetDefinition PatternExpression in_subset range SubsetDefinition ImportExpression in_subset range SubsetDefinition PermissibleValue in_subset range SubsetDefinition UniqueKey in_subset range SubsetDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SubsetDefinition native linkml:SubsetDefinition LinkML Source Direct name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element Induced name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: subset_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: subset_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: subset_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: subset_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: subset_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: subset_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: subset_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: subset_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: subset_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: subset_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: subset_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: subset_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: subset_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: subset_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: subset_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: subset_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: subset_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: subset_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: subset_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: subset_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: subset_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: subset_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: subset_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: subset_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: SubsetDefinition"},{"location":"SubsetDefinition/#class-subsetdefinition","text":"an element that can be used to group other metamodel elements URI: linkml:SubsetDefinition classDiagram class SubsetDefinition Element <|-- SubsetDefinition SubsetDefinition : aliases SubsetDefinition : alt_descriptions SubsetDefinition : annotations SubsetDefinition : broad_mappings SubsetDefinition : close_mappings SubsetDefinition : comments SubsetDefinition : conforms_to SubsetDefinition : definition_uri SubsetDefinition : deprecated SubsetDefinition : deprecated_element_has_exact_replacement SubsetDefinition : deprecated_element_has_possible_replacement SubsetDefinition : description SubsetDefinition : exact_mappings SubsetDefinition : examples SubsetDefinition : extensions SubsetDefinition : from_schema SubsetDefinition : id_prefixes SubsetDefinition : imported_from SubsetDefinition : in_language SubsetDefinition : in_subset SubsetDefinition : local_names SubsetDefinition : mappings SubsetDefinition : name SubsetDefinition : narrow_mappings SubsetDefinition : notes SubsetDefinition : rank SubsetDefinition : related_mappings SubsetDefinition : see_also SubsetDefinition : source SubsetDefinition : structured_aliases SubsetDefinition : title SubsetDefinition : todos","title":"Class: SubsetDefinition"},{"location":"SubsetDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] SubsetDefinition","title":"Inheritance"},{"location":"SubsetDefinition/#slots","text":"Name Cardinality and Range Description Inheritance in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element see_also 0..* Uriorcurie a reference CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element name 1..1 NONE the unique name of the element within the context of the schema Element rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"SubsetDefinition/#usages","text":"used by used in type used CommonMetadata in_subset range SubsetDefinition Element in_subset range SubsetDefinition SchemaDefinition subsets range SubsetDefinition SchemaDefinition in_subset range SubsetDefinition TypeDefinition in_subset range SubsetDefinition SubsetDefinition in_subset range SubsetDefinition Definition in_subset range SubsetDefinition EnumDefinition in_subset range SubsetDefinition StructuredAlias in_subset range SubsetDefinition AnonymousExpression in_subset range SubsetDefinition PathExpression in_subset range SubsetDefinition AnonymousSlotExpression in_subset range SubsetDefinition SlotDefinition in_subset range SubsetDefinition AnonymousClassExpression in_subset range SubsetDefinition ClassDefinition in_subset range SubsetDefinition ClassRule in_subset range SubsetDefinition PatternExpression in_subset range SubsetDefinition ImportExpression in_subset range SubsetDefinition PermissibleValue in_subset range SubsetDefinition UniqueKey in_subset range SubsetDefinition","title":"Usages"},{"location":"SubsetDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SubsetDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SubsetDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:SubsetDefinition native linkml:SubsetDefinition","title":"Mappings"},{"location":"SubsetDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"SubsetDefinition/#direct","text":"name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element","title":"Direct"},{"location":"SubsetDefinition/#induced","text":"name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: subset_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: subset_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: subset_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: subset_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: subset_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: subset_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: subset_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: subset_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: subset_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: subset_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: subset_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: subset_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: subset_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: subset_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: subset_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: subset_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: subset_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: subset_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: subset_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: subset_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: subset_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: subset_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: subset_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: subset_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Time/","text":"Type: Time A time object represents a (local) time of day, independent of any particular day URI: xsd:dateTime base : XSDTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: xsd:dateTime base : XSDTime uri : xsd:dateTime repr : str","title":"Type: Time"},{"location":"Time/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Time/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"TypeDefinition/","text":"Class: TypeDefinition an element that whose instances are atomic scalar values that can be mapped to primitive types URI: linkml:TypeDefinition classDiagram class TypeDefinition TypeExpression <|-- TypeDefinition Element <|-- TypeDefinition TypeDefinition : aliases TypeDefinition : all_of TypeDefinition : alt_descriptions TypeDefinition : annotations TypeDefinition : any_of TypeDefinition : base TypeDefinition : broad_mappings TypeDefinition : close_mappings TypeDefinition : comments TypeDefinition : conforms_to TypeDefinition : definition_uri TypeDefinition : deprecated TypeDefinition : deprecated_element_has_exact_replacement TypeDefinition : deprecated_element_has_possible_replacement TypeDefinition : description TypeDefinition : equals_number TypeDefinition : equals_string TypeDefinition : equals_string_in TypeDefinition : exact_mappings TypeDefinition : exactly_one_of TypeDefinition : examples TypeDefinition : extensions TypeDefinition : from_schema TypeDefinition : id_prefixes TypeDefinition : implicit_prefix TypeDefinition : imported_from TypeDefinition : in_language TypeDefinition : in_subset TypeDefinition : local_names TypeDefinition : mappings TypeDefinition : maximum_value TypeDefinition : minimum_value TypeDefinition : name TypeDefinition : narrow_mappings TypeDefinition : none_of TypeDefinition : notes TypeDefinition : pattern TypeDefinition : rank TypeDefinition : related_mappings TypeDefinition : repr TypeDefinition : see_also TypeDefinition : source TypeDefinition : structured_aliases TypeDefinition : structured_pattern TypeDefinition : title TypeDefinition : todos TypeDefinition : type_uri TypeDefinition : typeof TypeDefinition : union_of TypeDefinition : unit Inheritance Element [ Extensible Annotatable CommonMetadata ] TypeDefinition [ TypeExpression ] Slots Name Cardinality and Range Description Inheritance typeof 0..1 TypeDefinition Names a parent type direct base 0..1 NONE python base type that implements this type definition direct type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition direct repr 0..1 String the name of the python object that implements this type definition direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct exactly_one_of 0..1 Expression holds if only one of the expressions hold TypeExpression in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element see_also 0..* Uriorcurie a reference CommonMetadata pattern 0..1 String the string value of the slot must conform to this regular expression expresse... TypeExpression comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata any_of 0..1 Expression holds if at least one of the expressions hold TypeExpression broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata all_of 0..1 Expression holds if all of the expressions hold TypeExpression narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression none_of 0..1 Expression holds if none of the expressions hold TypeExpression name 1..1 NONE the unique name of the element within the context of the schema Element unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used SchemaDefinition default_range range TypeDefinition SchemaDefinition types range TypeDefinition TypeDefinition typeof domain TypeDefinition TypeDefinition typeof range TypeDefinition TypeDefinition base domain TypeDefinition TypeDefinition type_uri domain TypeDefinition TypeDefinition repr domain TypeDefinition TypeDefinition union_of range TypeDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:TypeDefinition native linkml:TypeDefinition LinkML Source Direct name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slots: - typeof - base - type_uri - repr - union_of slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition Induced name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition attributes: typeof: name: typeof description: Names a parent type comments: - the target type definition of the typeof slot is referred to as the \"parent type\" - the type definition containing the typeof slot is referred to as the \"child type\" - type definitions without a typeof slot are referred to as a \"root type\" in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 7 domain: type_definition alias: typeof owner: type_definition domain_of: - type_definition range: type_definition base: name: base description: python base type that implements this type definition comments: - every root type must have a base - the base is inherited by child types but may be overriden. Base compatibility is not checked. in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 8 domain: type_definition inherited: true alias: base owner: type_definition domain_of: - type_definition range: string type_uri: name: type_uri description: The uri that defines the possible values for the type definition comments: - uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) - every root type must have a type uri in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: type_definition inherited: true alias: uri owner: type_definition domain_of: - type_definition range: uriorcurie repr: name: repr description: the name of the python object that implements this type definition in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: type_definition inherited: true alias: repr owner: type_definition domain_of: - type_definition range: string union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: type_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_definition domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: type_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: type_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: type_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: type_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: type_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: type_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: type_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: type_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: type_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: type_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: type_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: type_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: type_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: type_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: type_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: type_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: type_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: type_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: type_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: type_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: type_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: type_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: type_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: type_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: type_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: TypeDefinition"},{"location":"TypeDefinition/#class-typedefinition","text":"an element that whose instances are atomic scalar values that can be mapped to primitive types URI: linkml:TypeDefinition classDiagram class TypeDefinition TypeExpression <|-- TypeDefinition Element <|-- TypeDefinition TypeDefinition : aliases TypeDefinition : all_of TypeDefinition : alt_descriptions TypeDefinition : annotations TypeDefinition : any_of TypeDefinition : base TypeDefinition : broad_mappings TypeDefinition : close_mappings TypeDefinition : comments TypeDefinition : conforms_to TypeDefinition : definition_uri TypeDefinition : deprecated TypeDefinition : deprecated_element_has_exact_replacement TypeDefinition : deprecated_element_has_possible_replacement TypeDefinition : description TypeDefinition : equals_number TypeDefinition : equals_string TypeDefinition : equals_string_in TypeDefinition : exact_mappings TypeDefinition : exactly_one_of TypeDefinition : examples TypeDefinition : extensions TypeDefinition : from_schema TypeDefinition : id_prefixes TypeDefinition : implicit_prefix TypeDefinition : imported_from TypeDefinition : in_language TypeDefinition : in_subset TypeDefinition : local_names TypeDefinition : mappings TypeDefinition : maximum_value TypeDefinition : minimum_value TypeDefinition : name TypeDefinition : narrow_mappings TypeDefinition : none_of TypeDefinition : notes TypeDefinition : pattern TypeDefinition : rank TypeDefinition : related_mappings TypeDefinition : repr TypeDefinition : see_also TypeDefinition : source TypeDefinition : structured_aliases TypeDefinition : structured_pattern TypeDefinition : title TypeDefinition : todos TypeDefinition : type_uri TypeDefinition : typeof TypeDefinition : union_of TypeDefinition : unit","title":"Class: TypeDefinition"},{"location":"TypeDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] TypeDefinition [ TypeExpression ]","title":"Inheritance"},{"location":"TypeDefinition/#slots","text":"Name Cardinality and Range Description Inheritance typeof 0..1 TypeDefinition Names a parent type direct base 0..1 NONE python base type that implements this type definition direct type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition direct repr 0..1 String the name of the python object that implements this type definition direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct exactly_one_of 0..1 Expression holds if only one of the expressions hold TypeExpression in_language 0..1 String CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element see_also 0..* Uriorcurie a reference CommonMetadata pattern 0..1 String the string value of the slot must conform to this regular expression expresse... TypeExpression comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata any_of 0..1 Expression holds if at least one of the expressions hold TypeExpression broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata all_of 0..1 Expression holds if all of the expressions hold TypeExpression narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata examples 0..* Example example usages of an element CommonMetadata local_names 0..* LocalName Element close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata conforms_to 0..1 NONE An established standard to which the element conforms Element equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression none_of 0..1 Expression holds if none of the expressions hold TypeExpression name 1..1 NONE the unique name of the element within the context of the schema Element unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"TypeDefinition/#usages","text":"used by used in type used SchemaDefinition default_range range TypeDefinition SchemaDefinition types range TypeDefinition TypeDefinition typeof domain TypeDefinition TypeDefinition typeof range TypeDefinition TypeDefinition base domain TypeDefinition TypeDefinition type_uri domain TypeDefinition TypeDefinition repr domain TypeDefinition TypeDefinition union_of range TypeDefinition","title":"Usages"},{"location":"TypeDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TypeDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"TypeDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:TypeDefinition native linkml:TypeDefinition","title":"Mappings"},{"location":"TypeDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"TypeDefinition/#direct","text":"name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slots: - typeof - base - type_uri - repr - union_of slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition","title":"Direct"},{"location":"TypeDefinition/#induced","text":"name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition attributes: typeof: name: typeof description: Names a parent type comments: - the target type definition of the typeof slot is referred to as the \"parent type\" - the type definition containing the typeof slot is referred to as the \"child type\" - type definitions without a typeof slot are referred to as a \"root type\" in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 7 domain: type_definition alias: typeof owner: type_definition domain_of: - type_definition range: type_definition base: name: base description: python base type that implements this type definition comments: - every root type must have a base - the base is inherited by child types but may be overriden. Base compatibility is not checked. in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 8 domain: type_definition inherited: true alias: base owner: type_definition domain_of: - type_definition range: string type_uri: name: type_uri description: The uri that defines the possible values for the type definition comments: - uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) - every root type must have a type uri in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: type_definition inherited: true alias: uri owner: type_definition domain_of: - type_definition range: uriorcurie repr: name: repr description: the name of the python object that implements this type definition in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: type_definition inherited: true alias: repr owner: type_definition domain_of: - type_definition range: string union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: type_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_definition domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: type_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: type_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: type_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: type_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: type_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: type_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: type_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: type_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: type_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: type_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: type_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: type_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: type_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: type_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: type_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: type_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: type_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: type_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: type_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: type_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: type_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: type_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: type_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: type_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: type_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"TypeExpression/","text":"Class: TypeExpression URI: linkml:TypeExpression classDiagram class TypeExpression Expression <|-- TypeExpression TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit TypeExpression <|-- AnonymousTypeExpression TypeExpression <|-- TypeDefinition TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit Inheritance Expression TypeExpression Slots Name Cardinality and Range Description Inheritance pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct none_of 0..1 Expression holds if none of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct any_of 0..1 Expression holds if at least one of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct Mixin Usage mixed into description AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:TypeExpression native linkml:TypeExpression LinkML Source Direct name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slots: - pattern - structured_pattern - unit - implicit_prefix - equals_string - equals_string_in - equals_number - minimum_value - maximum_value - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression Induced name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Class: TypeExpression"},{"location":"TypeExpression/#class-typeexpression","text":"URI: linkml:TypeExpression classDiagram class TypeExpression Expression <|-- TypeExpression TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit TypeExpression <|-- AnonymousTypeExpression TypeExpression <|-- TypeDefinition TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit","title":"Class: TypeExpression"},{"location":"TypeExpression/#inheritance","text":"Expression TypeExpression","title":"Inheritance"},{"location":"TypeExpression/#slots","text":"Name Cardinality and Range Description Inheritance pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct none_of 0..1 Expression holds if none of the expressions hold direct exactly_one_of 0..1 Expression holds if only one of the expressions hold direct any_of 0..1 Expression holds if at least one of the expressions hold direct all_of 0..1 Expression holds if all of the expressions hold direct","title":"Slots"},{"location":"TypeExpression/#mixin-usage","text":"mixed into description AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t...","title":"Mixin Usage"},{"location":"TypeExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TypeExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"TypeExpression/#mappings","text":"Mapping Type Mapped Value self linkml:TypeExpression native linkml:TypeExpression","title":"Mappings"},{"location":"TypeExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"TypeExpression/#direct","text":"name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slots: - pattern - structured_pattern - unit - implicit_prefix - equals_string - equals_string_in - equals_number - minimum_value - maximum_value - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Direct"},{"location":"TypeExpression/#induced","text":"name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Induced"},{"location":"UniqueKey/","text":"Class: UniqueKey a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey classDiagram class UniqueKey Extensible <|-- UniqueKey Annotatable <|-- UniqueKey CommonMetadata <|-- UniqueKey UniqueKey : aliases UniqueKey : alt_descriptions UniqueKey : annotations UniqueKey : broad_mappings UniqueKey : close_mappings UniqueKey : comments UniqueKey : deprecated UniqueKey : deprecated_element_has_exact_replacement UniqueKey : deprecated_element_has_possible_replacement UniqueKey : description UniqueKey : exact_mappings UniqueKey : examples UniqueKey : extensions UniqueKey : from_schema UniqueKey : imported_from UniqueKey : in_language UniqueKey : in_subset UniqueKey : mappings UniqueKey : narrow_mappings UniqueKey : notes UniqueKey : rank UniqueKey : related_mappings UniqueKey : see_also UniqueKey : source UniqueKey : structured_aliases UniqueKey : title UniqueKey : todos UniqueKey : unique_key_name UniqueKey : unique_key_slots Inheritance UniqueKey [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance unique_key_name 1..1 NONE name of the unique key direct unique_key_slots 1..* SlotDefinition list of slot names that form a key direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata Usages used by used in type used ClassDefinition unique_keys range UniqueKey UniqueKey unique_key_name domain UniqueKey UniqueKey unique_key_slots domain UniqueKey Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:UniqueKey native linkml:UniqueKey LinkML Source Direct name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata slots: - unique_key_name - unique_key_slots Induced name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata attributes: unique_key_name: name: unique_key_name description: name of the unique key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key key: true alias: unique_key_name owner: unique_key domain_of: - unique_key range: string required: true unique_key_slots: name: unique_key_slots description: list of slot names that form a key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key multivalued: true alias: unique_key_slots owner: unique_key domain_of: - unique_key range: slot_definition required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: unique_key domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: unique_key domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: unique_key domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: unique_key domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: unique_key domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: unique_key domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: unique_key domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: unique_key domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: unique_key domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: unique_key domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: unique_key domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: unique_key domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: unique_key domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: unique_key domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: unique_key domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: unique_key domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: unique_key domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: unique_key domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: unique_key domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: unique_key domain_of: - common_metadata - class_rule range: integer","title":"Class: UniqueKey"},{"location":"UniqueKey/#class-uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey classDiagram class UniqueKey Extensible <|-- UniqueKey Annotatable <|-- UniqueKey CommonMetadata <|-- UniqueKey UniqueKey : aliases UniqueKey : alt_descriptions UniqueKey : annotations UniqueKey : broad_mappings UniqueKey : close_mappings UniqueKey : comments UniqueKey : deprecated UniqueKey : deprecated_element_has_exact_replacement UniqueKey : deprecated_element_has_possible_replacement UniqueKey : description UniqueKey : exact_mappings UniqueKey : examples UniqueKey : extensions UniqueKey : from_schema UniqueKey : imported_from UniqueKey : in_language UniqueKey : in_subset UniqueKey : mappings UniqueKey : narrow_mappings UniqueKey : notes UniqueKey : rank UniqueKey : related_mappings UniqueKey : see_also UniqueKey : source UniqueKey : structured_aliases UniqueKey : title UniqueKey : todos UniqueKey : unique_key_name UniqueKey : unique_key_slots","title":"Class: UniqueKey"},{"location":"UniqueKey/#inheritance","text":"UniqueKey [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"UniqueKey/#slots","text":"Name Cardinality and Range Description Inheritance unique_key_name 1..1 NONE name of the unique key direct unique_key_slots 1..* SlotDefinition list of slot names that form a key direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata in_language 0..1 String CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata description 0..1 recommended NONE a description of the element's purpose and use CommonMetadata extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata title 0..1 NONE the official title of the element CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata notes 0..* NONE editorial notes about an element intended for internal consumption CommonMetadata comments 0..* NONE notes and comments about an element intended for external consumption CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata examples 0..* Example example usages of an element CommonMetadata annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata","title":"Slots"},{"location":"UniqueKey/#usages","text":"used by used in type used ClassDefinition unique_keys range UniqueKey UniqueKey unique_key_name domain UniqueKey UniqueKey unique_key_slots domain UniqueKey","title":"Usages"},{"location":"UniqueKey/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"UniqueKey/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"UniqueKey/#mappings","text":"Mapping Type Mapped Value self linkml:UniqueKey native linkml:UniqueKey","title":"Mappings"},{"location":"UniqueKey/#linkml-source","text":"","title":"LinkML Source"},{"location":"UniqueKey/#direct","text":"name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata slots: - unique_key_name - unique_key_slots","title":"Direct"},{"location":"UniqueKey/#induced","text":"name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata attributes: unique_key_name: name: unique_key_name description: name of the unique key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key key: true alias: unique_key_name owner: unique_key domain_of: - unique_key range: string required: true unique_key_slots: name: unique_key_slots description: list of slot names that form a key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key multivalued: true alias: unique_key_slots owner: unique_key domain_of: - unique_key range: slot_definition required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: unique_key domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: unique_key domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: unique_key domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: unique_key domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: unique_key domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: unique_key domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: unique_key domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: unique_key domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: unique_key domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: unique_key domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: unique_key domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: unique_key domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: unique_key domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: unique_key domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: unique_key domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: unique_key domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: unique_key domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: unique_key domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: unique_key domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: unique_key domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"UnitOfMeasure/","text":"Class: UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). URI: qudt:Unit classDiagram class UnitOfMeasure UnitOfMeasure : derivation UnitOfMeasure : exact_mappings UnitOfMeasure : has_quantity_kind UnitOfMeasure : iec61360code UnitOfMeasure : symbol UnitOfMeasure : ucum_code Slots Name Cardinality and Range Description Inheritance symbol 0..1 NONE name of the unit encoded as a symbol direct exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... direct ucum_code 0..1 recommended String associates a QUDT unit with its UCUM code (case-sensitive) direct derivation 0..1 String Expression for deriving this unit from other units direct has_quantity_kind 0..1 Uriorcurie Concept in a vocabulary or ontology that denotes the kind of quanity being me... direct iec61360code 0..1 NONE direct Usages used by used in type used TypeExpression unit range UnitOfMeasure AnonymousTypeExpression unit range UnitOfMeasure TypeDefinition unit range UnitOfMeasure SlotExpression unit range UnitOfMeasure AnonymousSlotExpression unit range UnitOfMeasure SlotDefinition unit range UnitOfMeasure PermissibleValue unit range UnitOfMeasure UnitOfMeasure ucum_code domain UnitOfMeasure Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units Mappings Mapping Type Mapped Value self qudt:Unit native linkml:UnitOfMeasure LinkML Source Direct name: UnitOfMeasure description: A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). from_schema: https://w3id.org/linkml/units rank: 1000 slots: - symbol - exact mappings - ucum_code - derivation - has_quantity_kind - iec61360code slot_usage: exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure class_uri: qudt:Unit any_of: - slot_conditions: ucum_code: name: ucum_code required: true - slot_conditions: iec61360code: name: iec61360code required: true - slot_conditions: symbol: name: symbol required: true - slot_conditions: exact_mappings: name: exact_mappings required: true Induced name: UnitOfMeasure description: A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). from_schema: https://w3id.org/linkml/units rank: 1000 slot_usage: exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure attributes: symbol: name: symbol description: name of the unit encoded as a symbol from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:symbol alias: symbol owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: UnitOfMeasure domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure range: uriorcurie ucum_code: name: ucum_code description: associates a QUDT unit with its UCUM code (case-sensitive). from_schema: https://w3id.org/linkml/units rank: 1000 domain: UnitOfMeasure slot_uri: qudt:ucumCode alias: ucum_code owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string recommended: true derivation: name: derivation description: Expression for deriving this unit from other units from_schema: https://w3id.org/linkml/units rank: 1000 alias: derivation owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string has_quantity_kind: name: has_quantity_kind description: Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length comments: - Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:hasQuantityKind alias: has_quantity_kind owner: UnitOfMeasure domain_of: - UnitOfMeasure range: uriorcurie iec61360code: name: iec61360code from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:iec61360Code alias: iec61360code owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string class_uri: qudt:Unit any_of: - slot_conditions: ucum_code: name: ucum_code required: true - slot_conditions: iec61360code: name: iec61360code required: true - slot_conditions: symbol: name: symbol required: true - slot_conditions: exact_mappings: name: exact_mappings required: true","title":"Class: UnitOfMeasure"},{"location":"UnitOfMeasure/#class-unitofmeasure","text":"A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). 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Properties Range: AnonymousClassExpression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules domain_of: - class_definition range: anonymous_class_expression inlined: true","title":"Slot: classification_rules"},{"location":"classification_rules/#slot-classification_rules","text":"the collection of classification rules that apply to all members of this class URI: linkml:classification_rules","title":"Slot: classification_rules"},{"location":"classification_rules/#applicable-classes","text":"Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"classification_rules/#properties","text":"Range: AnonymousClassExpression Multivalued: True","title":"Properties"},{"location":"classification_rules/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"classification_rules/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"classification_rules/#linkml-source","text":"name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules domain_of: - class_definition range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"close_mappings/","text":"Slot: close_mappings A list of terms from different schemas or terminology systems that have close meaning. URI: skos:closeMatch Inheritance mappings close_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/mappings LinkML Source name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings domain_of: - common_metadata range: uriorcurie","title":"Slot: close_mappings"},{"location":"close_mappings/#slot-close_mappings","text":"A list of terms from different schemas or terminology systems that have close meaning. URI: skos:closeMatch","title":"Slot: close_mappings"},{"location":"close_mappings/#inheritance","text":"mappings close_mappings","title":"Inheritance"},{"location":"close_mappings/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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URI: linkml:code_set Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: Uriorcurie TODOs this should be able to connect to an existing code set from TCCM Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set domain_of: - enum_expression range: uriorcurie","title":"Slot: code_set"},{"location":"code_set/#slot-code_set","text":"the identifier of an enumeration code set. URI: linkml:code_set","title":"Slot: code_set"},{"location":"code_set/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"code_set/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"code_set/#todos","text":"this should be able to connect to an existing code set from TCCM","title":"TODOs"},{"location":"code_set/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"code_set/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"code_set/#linkml-source","text":"name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set domain_of: - enum_expression range: uriorcurie","title":"LinkML Source"},{"location":"code_set_tag/","text":"Slot: code_set_tag the version tag of the enumeration code set URI: linkml:code_set_tag Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: String Comments enum_expression cannot have both a code_set_tag and a code_set_version Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag domain_of: - enum_expression range: string","title":"Slot: code_set_tag"},{"location":"code_set_tag/#slot-code_set_tag","text":"the version tag of the enumeration code set URI: linkml:code_set_tag","title":"Slot: code_set_tag"},{"location":"code_set_tag/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"code_set_tag/#properties","text":"Range: String","title":"Properties"},{"location":"code_set_tag/#comments","text":"enum_expression cannot have both a code_set_tag and a code_set_version","title":"Comments"},{"location":"code_set_tag/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"code_set_tag/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"code_set_tag/#linkml-source","text":"name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag domain_of: - enum_expression range: string","title":"LinkML Source"},{"location":"code_set_version/","text":"Slot: code_set_version the version identifier of the enumeration code set URI: linkml:code_set_version Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: String Comments we assume that version identifiers lexically sort in temporal order. Recommend semver when possible Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version domain_of: - enum_expression range: string","title":"Slot: code_set_version"},{"location":"code_set_version/#slot-code_set_version","text":"the version identifier of the enumeration code set URI: linkml:code_set_version","title":"Slot: code_set_version"},{"location":"code_set_version/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"code_set_version/#properties","text":"Range: String","title":"Properties"},{"location":"code_set_version/#comments","text":"we assume that version identifiers lexically sort in temporal order. Recommend semver when possible","title":"Comments"},{"location":"code_set_version/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"code_set_version/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"code_set_version/#linkml-source","text":"name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version domain_of: - enum_expression range: string","title":"LinkML Source"},{"location":"comments/","text":"Slot: comments notes and comments about an element intended for external consumption URI: skos:note Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments domain_of: - common_metadata range: string","title":"Slot: comments"},{"location":"comments/#slot-comments","text":"notes and comments about an element intended for external consumption URI: skos:note","title":"Slot: comments"},{"location":"comments/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts domain_of: - enum_expression range: uriorcurie","title":"Slot: concepts"},{"location":"concepts/#slot-concepts","text":"A list of identifiers that are used to construct a set of permissible values URI: linkml:concepts","title":"Slot: concepts"},{"location":"concepts/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"concepts/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"concepts/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"concepts/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"concepts/#linkml-source","text":"name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts domain_of: - enum_expression range: uriorcurie","title":"LinkML Source"},{"location":"conforms_to/","text":"Slot: conforms_to An established standard to which the element conforms. URI: dcterms:conformsTo Applicable Classes Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to domain_of: - element range: string","title":"Slot: conforms_to"},{"location":"conforms_to/#slot-conforms_to","text":"An established standard to which the element conforms. URI: dcterms:conformsTo","title":"Slot: conforms_to"},{"location":"conforms_to/#applicable-classes","text":"Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"conforms_to/#properties","text":"Range: String","title":"Properties"},{"location":"conforms_to/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conforms_to/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"conforms_to/#linkml-source","text":"name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to domain_of: - element range: string","title":"LinkML Source"},{"location":"created_by/","text":"Slot: created_by agent that created the element URI: pav:createdBy Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by domain_of: - definition range: uriorcurie","title":"Slot: created_by"},{"location":"created_by/#slot-created_by","text":"agent that created the element URI: pav:createdBy","title":"Slot: created_by"},{"location":"created_by/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"created_by/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"created_by/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"created_by/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"created_by/#linkml-source","text":"name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by domain_of: - definition range: uriorcurie","title":"LinkML Source"},{"location":"created_on/","text":"Slot: created_on time at which the element was created URI: pav:createdOn Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Datetime Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on domain_of: - definition range: datetime","title":"Slot: created_on"},{"location":"created_on/#slot-created_on","text":"time at which the element was created URI: pav:createdOn","title":"Slot: created_on"},{"location":"created_on/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"created_on/#properties","text":"Range: Datetime","title":"Properties"},{"location":"created_on/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"created_on/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"created_on/#linkml-source","text":"name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on domain_of: - definition range: datetime","title":"LinkML Source"},{"location":"credits/","text":"Credits this project was made using the Link Model Language (LinkML) framework","title":"Credits"},{"location":"credits/#credits","text":"this project was made using the Link Model Language (LinkML) framework","title":"Credits"},{"location":"deactivated/","text":"Slot: deactivated a deactivated rule is not executed by the rules engine URI: sh:deactivated Applicable Classes Name Description ClassRule A rule that applies to instances of a class Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated domain_of: - class_rule range: boolean","title":"Slot: deactivated"},{"location":"deactivated/#slot-deactivated","text":"a deactivated rule is not executed by the rules engine URI: sh:deactivated","title":"Slot: deactivated"},{"location":"deactivated/#applicable-classes","text":"Name Description ClassRule A rule that applies to instances of a class","title":"Applicable Classes"},{"location":"deactivated/#properties","text":"Range: Boolean","title":"Properties"},{"location":"deactivated/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"deactivated/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"deactivated/#linkml-source","text":"name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated domain_of: - class_rule range: boolean","title":"LinkML Source"},{"location":"default_curi_maps/","text":"Slot: default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables URI: linkml:default_curi_maps Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: default_curi_maps description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables in_subset: - 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BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: default_curi_maps domain_of: - schema_definition range: string","title":"LinkML Source"},{"location":"default_prefix/","text":"Slot: default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab URI: linkml:default_prefix Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 11 domain: schema_definition ifabsent: default_ns alias: default_prefix domain_of: - schema_definition range: string","title":"Slot: default_prefix"},{"location":"default_prefix/#slot-default_prefix","text":"default and base prefix -- used for ':' identifiers, @base and @vocab URI: linkml:default_prefix","title":"Slot: default_prefix"},{"location":"default_prefix/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"default_prefix/#properties","text":"Range: String","title":"Properties"},{"location":"default_prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"default_prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"default_prefix/#linkml-source","text":"name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - 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Could be broadened if required in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 13 domain: schema_definition alias: default_range domain_of: - schema_definition range: type_definition","title":"LinkML Source"},{"location":"defining_slots/","text":"Slot: defining_slots The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom URI: linkml:defining_slots Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... 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SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... 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SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: derivation description: Expression for deriving this unit from other units from_schema: https://w3id.org/linkml/units rank: 1000 alias: derivation domain_of: - UnitOfMeasure range: string","title":"Slot: derivation"},{"location":"derivation/#slot-derivation","text":"Expression for deriving this unit from other units URI: linkml:derivation","title":"Slot: derivation"},{"location":"derivation/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"derivation/#properties","text":"Range: String","title":"Properties"},{"location":"derivation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"derivation/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"derivation/#linkml-source","text":"name: derivation description: Expression for deriving this unit from other units from_schema: https://w3id.org/linkml/units rank: 1000 alias: derivation domain_of: - UnitOfMeasure range: string","title":"LinkML Source"},{"location":"description/","text":"Slot: description a description of the element's purpose and use URI: skos:definition Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"description/#properties","text":"Range: String Recommended: True","title":"Properties"},{"location":"description/#aliases","text":"definition","title":"Aliases"},{"location":"description/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"description/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"description/#linkml-source","text":"name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description domain_of: - common_metadata - permissible_value range: string recommended: true","title":"LinkML Source"},{"location":"designates_type/","text":"Slot: designates_type True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition URI: linkml:designates_type Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Aliases type designator Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: designates_type description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - type designator rank: 1000 domain: slot_definition inherited: true alias: designates_type domain_of: - slot_definition range: boolean","title":"Slot: designates_type"},{"location":"designates_type/#slot-designates_type","text":"True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition URI: linkml:designates_type","title":"Slot: designates_type"},{"location":"designates_type/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"designates_type/#properties","text":"Range: Boolean","title":"Properties"},{"location":"designates_type/#aliases","text":"type designator","title":"Aliases"},{"location":"designates_type/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"designates_type/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"designates_type/#linkml-source","text":"name: designates_type description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - type designator rank: 1000 domain: slot_definition inherited: true alias: designates_type domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"disjoint_with/","text":"Slot: disjoint_with Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances URI: linkml:disjoint_with Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Definition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with domain_of: - slot_definition - class_definition range: definition","title":"Slot: disjoint_with"},{"location":"disjoint_with/#slot-disjoint_with","text":"Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances URI: linkml:disjoint_with","title":"Slot: disjoint_with"},{"location":"disjoint_with/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"disjoint_with/#properties","text":"Range: Definition Multivalued: True","title":"Properties"},{"location":"disjoint_with/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"disjoint_with/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"disjoint_with/#linkml-source","text":"name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with domain_of: - slot_definition - class_definition range: definition","title":"LinkML Source"},{"location":"domain/","text":"Slot: domain _defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 _ URI: linkml:domain Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: ClassDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: domain description: \"defines the type of the subject of the slot. Given the following slot\\ \\ definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n X:\\n \\ \\ S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain domain_of: - slot_definition range: class_definition","title":"Slot: domain"},{"location":"domain/#slot-domain","text":"_defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 _ URI: linkml:domain","title":"Slot: domain"},{"location":"domain/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"domain/#properties","text":"Range: ClassDefinition","title":"Properties"},{"location":"domain/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"domain/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"domain/#linkml-source","text":"name: domain description: \"defines the type of the subject of the slot. Given the following slot\\ \\ definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n X:\\n \\ \\ S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain domain_of: - slot_definition range: class_definition","title":"LinkML Source"},{"location":"domain_of/","text":"Slot: domain_of the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context URI: linkml:domain_of Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: ClassDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of domain_of: - slot_definition range: class_definition","title":"Slot: domain_of"},{"location":"domain_of/#slot-domain_of","text":"the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context URI: linkml:domain_of","title":"Slot: domain_of"},{"location":"domain_of/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"domain_of/#properties","text":"Range: ClassDefinition Multivalued: True","title":"Properties"},{"location":"domain_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"domain_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"domain_of/#linkml-source","text":"name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of domain_of: - slot_definition range: class_definition","title":"LinkML Source"},{"location":"elseconditions/","text":"Slot: elseconditions an expression that must hold for an instance of the class, if the preconditions no not hold URI: linkml:elseconditions Applicable Classes Name Description ClassRule A rule that applies to instances of a class Properties Range: AnonymousClassExpression Aliases else Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"Slot: elseconditions"},{"location":"elseconditions/#slot-elseconditions","text":"an expression that must hold for an instance of the class, if the preconditions no not hold URI: linkml:elseconditions","title":"Slot: elseconditions"},{"location":"elseconditions/#applicable-classes","text":"Name Description ClassRule A rule that applies to instances of a class","title":"Applicable Classes"},{"location":"elseconditions/#properties","text":"Range: AnonymousClassExpression","title":"Properties"},{"location":"elseconditions/#aliases","text":"else","title":"Aliases"},{"location":"elseconditions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"elseconditions/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"elseconditions/#linkml-source","text":"name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"emit_prefixes/","text":"Slot: emit_prefixes a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. URI: linkml:emit_prefixes Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Ncname Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes domain_of: - schema_definition range: ncname","title":"Slot: emit_prefixes"},{"location":"emit_prefixes/#slot-emit_prefixes","text":"a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. URI: linkml:emit_prefixes","title":"Slot: emit_prefixes"},{"location":"emit_prefixes/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"emit_prefixes/#properties","text":"Range: Ncname Multivalued: True","title":"Properties"},{"location":"emit_prefixes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"emit_prefixes/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"emit_prefixes/#linkml-source","text":"name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes domain_of: - schema_definition range: ncname","title":"LinkML Source"},{"location":"enum_range/","text":"Slot: enum_range An inlined enumeration URI: linkml:enum_range Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: EnumExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range domain_of: - slot_expression range: enum_expression","title":"Slot: enum_range"},{"location":"enum_range/#slot-enum_range","text":"An inlined enumeration URI: linkml:enum_range","title":"Slot: enum_range"},{"location":"enum_range/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"enum_range/#properties","text":"Range: EnumExpression","title":"Properties"},{"location":"enum_range/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"enum_range/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"enum_range/#linkml-source","text":"name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range domain_of: - slot_expression range: enum_expression","title":"LinkML Source"},{"location":"enum_uri/","text":"Slot: enum_uri URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas URI: linkml:enum_uri Applicable Classes Name Description EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: Uriorcurie Aliases public ID Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri domain_of: - enum_definition range: uriorcurie","title":"Slot: enum_uri"},{"location":"enum_uri/#slot-enum_uri","text":"URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas URI: linkml:enum_uri","title":"Slot: enum_uri"},{"location":"enum_uri/#applicable-classes","text":"Name Description EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"enum_uri/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"enum_uri/#aliases","text":"public ID","title":"Aliases"},{"location":"enum_uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"enum_uri/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"enum_uri/#linkml-source","text":"name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri domain_of: - enum_definition range: uriorcurie","title":"LinkML Source"},{"location":"enums/","text":"Slot: enums An index to the collection of all enum definitions in the schema URI: linkml:enums Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: EnumDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums domain_of: - schema_definition range: enum_definition inlined: true","title":"Slot: enums"},{"location":"enums/#slot-enums","text":"An index to the collection of all enum definitions in the schema URI: linkml:enums","title":"Slot: enums"},{"location":"enums/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"enums/#properties","text":"Range: EnumDefinition Multivalued: True","title":"Properties"},{"location":"enums/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"enums/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"enums/#linkml-source","text":"name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums domain_of: - schema_definition range: enum_definition inlined: true","title":"LinkML Source"},{"location":"equals_expression/","text":"Slot: equals_expression the value of the slot must equal the value of the evaluated expression URI: linkml:equals_expression Inheritance list_value_specification_constant equals_expression Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Comments for example, a 'length' slot may have an equals_expression with value '(end-start)+1' TODOs specify expression language See Also https://github.com/linkml/linkml/issues/75 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression domain_of: - slot_expression range: string","title":"Slot: equals_expression"},{"location":"equals_expression/#slot-equals_expression","text":"the value of the slot must equal the value of the evaluated expression URI: linkml:equals_expression","title":"Slot: equals_expression"},{"location":"equals_expression/#inheritance","text":"list_value_specification_constant equals_expression","title":"Inheritance"},{"location":"equals_expression/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_expression/#properties","text":"Range: String","title":"Properties"},{"location":"equals_expression/#comments","text":"for example, a 'length' slot may have an equals_expression with value '(end-start)+1'","title":"Comments"},{"location":"equals_expression/#todos","text":"specify expression language","title":"TODOs"},{"location":"equals_expression/#see-also","text":"https://github.com/linkml/linkml/issues/75","title":"See Also"},{"location":"equals_expression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_expression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_expression/#linkml-source","text":"name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression domain_of: - slot_expression range: string","title":"LinkML Source"},{"location":"equals_number/","text":"Slot: equals_number the slot must have range of a number and the value of the slot must equal the specified value URI: linkml:equals_number Inheritance list_value_specification_constant equals_number Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number domain_of: - type_expression - slot_expression range: integer","title":"Slot: equals_number"},{"location":"equals_number/#slot-equals_number","text":"the slot must have range of a number and the value of the slot must equal the specified value URI: linkml:equals_number","title":"Slot: equals_number"},{"location":"equals_number/#inheritance","text":"list_value_specification_constant equals_number","title":"Inheritance"},{"location":"equals_number/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_number/#properties","text":"Range: Integer","title":"Properties"},{"location":"equals_number/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_number/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_number/#linkml-source","text":"name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number domain_of: - type_expression - slot_expression range: integer","title":"LinkML Source"},{"location":"equals_number_in/","text":"Slot: equals_number_in the slot must have range number and the value of the slot must equal one of the specified values URI: linkml:equals_number_in Inheritance list_value_specification_constant equals_number_in Properties Range: Integer Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_number_in description: the slot must have range number and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_number_in range: integer","title":"Slot: equals_number_in"},{"location":"equals_number_in/#slot-equals_number_in","text":"the slot must have range number and the value of the slot must equal one of the specified values URI: linkml:equals_number_in","title":"Slot: equals_number_in"},{"location":"equals_number_in/#inheritance","text":"list_value_specification_constant equals_number_in","title":"Inheritance"},{"location":"equals_number_in/#properties","text":"Range: Integer Multivalued: True","title":"Properties"},{"location":"equals_number_in/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_number_in/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_number_in/#linkml-source","text":"name: equals_number_in description: the slot must have range number and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_number_in range: integer","title":"LinkML Source"},{"location":"equals_string/","text":"Slot: equals_string the slot must have range string and the value of the slot must equal the specified value URI: linkml:equals_string Inheritance list_value_specification_constant equals_string Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string domain_of: - type_expression - slot_expression range: string","title":"Slot: equals_string"},{"location":"equals_string/#slot-equals_string","text":"the slot must have range string and the value of the slot must equal the specified value URI: linkml:equals_string","title":"Slot: equals_string"},{"location":"equals_string/#inheritance","text":"list_value_specification_constant equals_string","title":"Inheritance"},{"location":"equals_string/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_string/#properties","text":"Range: String","title":"Properties"},{"location":"equals_string/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_string/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_string/#linkml-source","text":"name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"equals_string_in/","text":"Slot: equals_string_in the slot must have range string and the value of the slot must equal one of the specified values URI: linkml:equals_string_in Inheritance list_value_specification_constant equals_string_in Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in domain_of: - type_expression - slot_expression range: string","title":"Slot: equals_string_in"},{"location":"equals_string_in/#slot-equals_string_in","text":"the slot must have range string and the value of the slot must equal one of the specified values URI: linkml:equals_string_in","title":"Slot: equals_string_in"},{"location":"equals_string_in/#inheritance","text":"list_value_specification_constant equals_string_in","title":"Inheritance"},{"location":"equals_string_in/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_string_in/#properties","text":"Range: String Multivalued: True","title":"Properties"},{"location":"equals_string_in/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_string_in/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_string_in/#linkml-source","text":"name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"exact_mappings/","text":"Slot: exact_mappings A list of terms from different schemas or terminology systems that have identical meaning. URI: skos:exactMatch Inheritance mappings exact_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/mappings LinkML Source name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings domain_of: - common_metadata - UnitOfMeasure range: uriorcurie","title":"Slot: exact_mappings"},{"location":"exact_mappings/#slot-exact_mappings","text":"A list of terms from different schemas or terminology systems that have identical meaning. URI: skos:exactMatch","title":"Slot: exact_mappings"},{"location":"exact_mappings/#inheritance","text":"mappings exact_mappings","title":"Inheritance"},{"location":"exact_mappings/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"exact_mappings/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"exact_mappings/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"exact_mappings/#schema-source","text":"from schema: https://w3id.org/linkml/mappings","title":"Schema Source"},{"location":"exact_mappings/#linkml-source","text":"name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings domain_of: - common_metadata - UnitOfMeasure range: uriorcurie","title":"LinkML Source"},{"location":"exactly_one_of/","text":"Slot: exactly_one_of holds if only one of the expressions hold URI: linkml:exactly_one_of Inheritance boolean_slot exactly_one_of Applicable Classes Name Description TypeExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Expression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression range: expression","title":"Slot: exactly_one_of"},{"location":"exactly_one_of/#slot-exactly_one_of","text":"holds if only one of the expressions hold URI: linkml:exactly_one_of","title":"Slot: exactly_one_of"},{"location":"exactly_one_of/#inheritance","text":"boolean_slot exactly_one_of","title":"Inheritance"},{"location":"exactly_one_of/#applicable-classes","text":"Name Description TypeExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"exactly_one_of/#properties","text":"Range: Expression Multivalued: True","title":"Properties"},{"location":"exactly_one_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"exactly_one_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"exactly_one_of/#linkml-source","text":"name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression range: expression","title":"LinkML Source"},{"location":"examples/","text":"Slot: examples example usages of an element URI: linkml:examples Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Example Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples domain_of: - common_metadata range: example inlined: true","title":"Slot: examples"},{"location":"examples/#slot-examples","text":"example usages of an element URI: linkml:examples","title":"Slot: examples"},{"location":"examples/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"examples/#properties","text":"Range: Example Multivalued: True","title":"Properties"},{"location":"examples/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"examples/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"examples/#linkml-source","text":"name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples domain_of: - common_metadata range: example inlined: true","title":"LinkML Source"},{"location":"extension_tag/","text":"Slot: extension_tag a tag associated with an extension URI: linkml:extension_tag Applicable Classes Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation Properties Range: Uriorcurie Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions LinkML Source name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag domain_of: - extension range: uriorcurie required: true","title":"Slot: extension_tag"},{"location":"extension_tag/#slot-extension_tag","text":"a tag associated with an extension URI: linkml:extension_tag","title":"Slot: extension_tag"},{"location":"extension_tag/#applicable-classes","text":"Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation","title":"Applicable Classes"},{"location":"extension_tag/#properties","text":"Range: Uriorcurie Required: True","title":"Properties"},{"location":"extension_tag/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"extension_tag/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"extension_tag/#linkml-source","text":"name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag domain_of: - extension range: uriorcurie required: true","title":"LinkML Source"},{"location":"extension_value/","text":"Slot: extension_value the actual annotation URI: linkml:extension_value Applicable Classes Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions LinkML Source name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value domain_of: - extension range: string required: true","title":"Slot: extension_value"},{"location":"extension_value/#slot-extension_value","text":"the actual annotation URI: linkml:extension_value","title":"Slot: extension_value"},{"location":"extension_value/#applicable-classes","text":"Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation","title":"Applicable Classes"},{"location":"extension_value/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"extension_value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"extension_value/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"extension_value/#linkml-source","text":"name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value domain_of: - extension range: string required: true","title":"LinkML Source"},{"location":"extensions/","text":"Slot: extensions a tag/text tuple attached to an arbitrary element URI: linkml:extensions Inheritance extensions annotations Applicable Classes Name Description Extension a tag/value pair used to add non-model information to an entry Extensible mixin for classes that support extension Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Annotation a tag/value pair with the semantics of OWL Annotation Properties Range: Extension Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions LinkML Source name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions domain_of: - extension - extensible range: extension inlined: true","title":"Slot: extensions"},{"location":"extensions/#slot-extensions","text":"a tag/text tuple attached to an arbitrary element URI: linkml:extensions","title":"Slot: extensions"},{"location":"extensions/#inheritance","text":"extensions annotations","title":"Inheritance"},{"location":"extensions/#applicable-classes","text":"Name Description Extension a tag/value pair used to add non-model information to an entry Extensible mixin for classes that support extension Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Annotation a tag/value pair with the semantics of OWL Annotation","title":"Applicable Classes"},{"location":"extensions/#properties","text":"Range: Extension Multivalued: True","title":"Properties"},{"location":"extensions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"extensions/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"extensions/#linkml-source","text":"name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions domain_of: - extension - extensible range: extension inlined: true","title":"LinkML Source"},{"location":"followed_by/","text":"Slot: followed_by in a sequential list, this indicates the next member URI: linkml:followed_by Applicable Classes Name Description PathExpression An expression that describes an abstract path from an object to another throu... Properties Range: Expression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by domain_of: - path_expression range: expression","title":"Slot: followed_by"},{"location":"followed_by/#slot-followed_by","text":"in a sequential list, this indicates the next member URI: linkml:followed_by","title":"Slot: followed_by"},{"location":"followed_by/#applicable-classes","text":"Name Description PathExpression An expression that describes an abstract path from an object to another throu...","title":"Applicable Classes"},{"location":"followed_by/#properties","text":"Range: Expression","title":"Properties"},{"location":"followed_by/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"followed_by/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"followed_by/#linkml-source","text":"name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by domain_of: - path_expression range: expression","title":"LinkML Source"},{"location":"from_schema/","text":"Slot: from_schema id of the schema that defined the element URI: skos:inScheme Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uri Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema domain_of: - common_metadata range: uri","title":"Slot: from_schema"},{"location":"from_schema/#slot-from_schema","text":"id of the schema that defined the element URI: skos:inScheme","title":"Slot: from_schema"},{"location":"from_schema/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"from_schema/#properties","text":"Range: Uri","title":"Properties"},{"location":"from_schema/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"from_schema/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"from_schema/#linkml-source","text":"name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema domain_of: - common_metadata range: uri","title":"LinkML Source"},{"location":"generation_date/","text":"Slot: generation_date date and time that the schema was loaded/generated URI: linkml:generation_date Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Datetime Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date domain_of: - schema_definition range: datetime","title":"Slot: generation_date"},{"location":"generation_date/#slot-generation_date","text":"date and time that the schema was loaded/generated URI: linkml:generation_date","title":"Slot: generation_date"},{"location":"generation_date/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"generation_date/#properties","text":"Range: Datetime","title":"Properties"},{"location":"generation_date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"generation_date/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"generation_date/#linkml-source","text":"name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date domain_of: - schema_definition range: datetime","title":"LinkML Source"},{"location":"has_member/","text":"Slot: has_member the value of the slot is multivalued with at least one member satisfying the condition URI: linkml:has_member Inheritance list_value_specification_constant has_member Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: AnonymousSlotExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member domain_of: - slot_expression range: anonymous_slot_expression","title":"Slot: has_member"},{"location":"has_member/#slot-has_member","text":"the value of the slot is multivalued with at least one member satisfying the condition URI: linkml:has_member","title":"Slot: has_member"},{"location":"has_member/#inheritance","text":"list_value_specification_constant has_member","title":"Inheritance"},{"location":"has_member/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"has_member/#properties","text":"Range: AnonymousSlotExpression","title":"Properties"},{"location":"has_member/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_member/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"has_member/#linkml-source","text":"name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member domain_of: - slot_expression range: anonymous_slot_expression","title":"LinkML Source"},{"location":"has_quantity_kind/","text":"Slot: has_quantity_kind Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length URI: qudt:hasQuantityKind Applicable Classes Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Properties Range: Uriorcurie Comments Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: has_quantity_kind description: Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length comments: - Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:hasQuantityKind alias: has_quantity_kind domain_of: - UnitOfMeasure range: uriorcurie","title":"Slot: has_quantity_kind"},{"location":"has_quantity_kind/#slot-has_quantity_kind","text":"Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length URI: qudt:hasQuantityKind","title":"Slot: has_quantity_kind"},{"location":"has_quantity_kind/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"has_quantity_kind/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"has_quantity_kind/#comments","text":"Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind","title":"Comments"},{"location":"has_quantity_kind/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_quantity_kind/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"has_quantity_kind/#linkml-source","text":"name: has_quantity_kind description: Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length comments: - Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:hasQuantityKind alias: has_quantity_kind domain_of: - UnitOfMeasure range: uriorcurie","title":"LinkML Source"},{"location":"home/","text":"Introduction Welcome to the LinkML metamodel reference guide. For full documentation see linkml.io/linkml/ .","title":"About"},{"location":"home/#introduction","text":"Welcome to the LinkML metamodel reference guide. For full documentation see linkml.io/linkml/ .","title":"Introduction"},{"location":"id/","text":"Slot: id The official schema URI URI: linkml:id Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Uri Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id domain_of: - schema_definition range: uri required: true","title":"Slot: id"},{"location":"id/#slot-id","text":"The official schema URI URI: linkml:id","title":"Slot: id"},{"location":"id/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"id/#properties","text":"Range: Uri Required: True","title":"Properties"},{"location":"id/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"id/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"id/#linkml-source","text":"name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id domain_of: - schema_definition range: uri required: true","title":"LinkML Source"},{"location":"id_prefixes/","text":"Slot: id_prefixes the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes Applicable Classes Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Ncname Multivalued: True Comments Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open) See Also https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes domain_of: - element range: ncname","title":"Slot: id_prefixes"},{"location":"id_prefixes/#slot-id_prefixes","text":"the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes","title":"Slot: id_prefixes"},{"location":"id_prefixes/#applicable-classes","text":"Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"id_prefixes/#properties","text":"Range: Ncname Multivalued: True","title":"Properties"},{"location":"id_prefixes/#comments","text":"Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open)","title":"Comments"},{"location":"id_prefixes/#see-also","text":"https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28","title":"See Also"},{"location":"id_prefixes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"id_prefixes/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"id_prefixes/#linkml-source","text":"name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes domain_of: - element range: ncname","title":"LinkML Source"},{"location":"identifier/","text":"Slot: identifier True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Aliases primary key ID UID code Comments identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both See Also https://en.wikipedia.org/wiki/Identifier Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier domain_of: - slot_definition range: boolean","title":"Slot: identifier"},{"location":"identifier/#slot-identifier","text":"True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier","title":"Slot: identifier"},{"location":"identifier/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"identifier/#properties","text":"Range: Boolean","title":"Properties"},{"location":"identifier/#aliases","text":"primary key ID UID code","title":"Aliases"},{"location":"identifier/#comments","text":"identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both","title":"Comments"},{"location":"identifier/#see-also","text":"https://en.wikipedia.org/wiki/Identifier","title":"See Also"},{"location":"identifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"identifier/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"identifier/#linkml-source","text":"name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"identifier_pattern/","text":"Slot: identifier_pattern A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values URI: linkml:identifier_pattern Applicable Classes Name Description MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: identifier_pattern description: A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: match_query alias: identifier_pattern domain_of: - match_query range: string","title":"Slot: identifier_pattern"},{"location":"identifier_pattern/#slot-identifier_pattern","text":"A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values URI: linkml:identifier_pattern","title":"Slot: identifier_pattern"},{"location":"identifier_pattern/#applicable-classes","text":"Name Description MatchQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"identifier_pattern/#properties","text":"Range: String","title":"Properties"},{"location":"identifier_pattern/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"identifier_pattern/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"identifier_pattern/#linkml-source","text":"name: identifier_pattern description: A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: match_query alias: identifier_pattern domain_of: - match_query range: string","title":"LinkML Source"},{"location":"iec61360code/","text":"Slot: iec61360code URI: qudt:iec61360Code Applicable Classes Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: iec61360code from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:iec61360Code alias: iec61360code domain_of: - UnitOfMeasure range: string","title":"Slot: iec61360code"},{"location":"iec61360code/#slot-iec61360code","text":"URI: qudt:iec61360Code","title":"Slot: iec61360code"},{"location":"iec61360code/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"iec61360code/#properties","text":"Range: String","title":"Properties"},{"location":"iec61360code/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"iec61360code/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"iec61360code/#linkml-source","text":"name: iec61360code from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:iec61360Code alias: iec61360code domain_of: - UnitOfMeasure range: string","title":"LinkML Source"},{"location":"ifabsent/","text":"Slot: ifabsent function that provides a default value for the slot. Possible values for this slot are defined in linkml_runtime.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value) -- integer\\ \\ value\\n * str(value) -- string value\\n * default_range -- schema default range\\n\\ \\ * bnode -- blank node identifier\\n * slot_uri -- URI for the slot\\n * class_curie\\ \\ -- CURIE for the containing class\\n * class_uri -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent domain_of: - slot_definition range: string","title":"Slot: ifabsent"},{"location":"ifabsent/#slot-ifabsent","text":"function that provides a default value for the slot. Possible values for this slot are defined in linkml_runtime.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent","title":"Slot: ifabsent"},{"location":"ifabsent/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"ifabsent/#properties","text":"Range: String","title":"Properties"},{"location":"ifabsent/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ifabsent/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ifabsent/#linkml-source","text":"name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value) -- integer\\ \\ value\\n * str(value) -- string value\\n * default_range -- schema default range\\n\\ \\ * bnode -- blank node identifier\\n * slot_uri -- URI for the slot\\n * class_curie\\ \\ -- CURIE for the containing class\\n * class_uri -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"implicit_prefix/","text":"Slot: implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with this string URI: linkml:implicit_prefix Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix domain_of: - type_expression - slot_expression range: string","title":"Slot: implicit_prefix"},{"location":"implicit_prefix/#slot-implicit_prefix","text":"Causes the slot value to be interpreted as a uriorcurie after prefixing with this string URI: linkml:implicit_prefix","title":"Slot: implicit_prefix"},{"location":"implicit_prefix/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"implicit_prefix/#properties","text":"Range: String","title":"Properties"},{"location":"implicit_prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"implicit_prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"implicit_prefix/#linkml-source","text":"name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"import_as/","text":"Slot: import_as URI: linkml:import_as Applicable Classes Name Description ImportExpression an expression describing an import Properties Range: Ncname Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as domain_of: - import_expression range: ncname","title":"Slot: import_as"},{"location":"import_as/#slot-import_as","text":"URI: linkml:import_as","title":"Slot: import_as"},{"location":"import_as/#applicable-classes","text":"Name Description ImportExpression an expression describing an import","title":"Applicable Classes"},{"location":"import_as/#properties","text":"Range: Ncname","title":"Properties"},{"location":"import_as/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"import_as/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"import_as/#linkml-source","text":"name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as domain_of: - import_expression range: ncname","title":"LinkML Source"},{"location":"import_from/","text":"Slot: import_from URI: linkml:import_from Applicable Classes Name Description ImportExpression an expression describing an import Properties Range: Uriorcurie Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from domain_of: - import_expression range: uriorcurie required: true","title":"Slot: import_from"},{"location":"import_from/#slot-import_from","text":"URI: linkml:import_from","title":"Slot: import_from"},{"location":"import_from/#applicable-classes","text":"Name Description ImportExpression an expression describing an import","title":"Applicable Classes"},{"location":"import_from/#properties","text":"Range: Uriorcurie Required: True","title":"Properties"},{"location":"import_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"import_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"import_from/#linkml-source","text":"name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from domain_of: - import_expression range: uriorcurie required: true","title":"LinkML Source"},{"location":"import_map/","text":"Slot: import_map URI: linkml:import_map Applicable Classes Name Description ImportExpression an expression describing an import Properties Range: Setting Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map domain_of: - import_expression range: setting inlined: true","title":"Slot: import_map"},{"location":"import_map/#slot-import_map","text":"URI: linkml:import_map","title":"Slot: import_map"},{"location":"import_map/#applicable-classes","text":"Name Description ImportExpression an expression describing an import","title":"Applicable Classes"},{"location":"import_map/#properties","text":"Range: Setting Multivalued: True","title":"Properties"},{"location":"import_map/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"import_map/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"import_map/#linkml-source","text":"name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map domain_of: - import_expression range: setting inlined: true","title":"LinkML Source"},{"location":"imported_from/","text":"Slot: imported_from the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from domain_of: - common_metadata range: string","title":"Slot: imported_from"},{"location":"imported_from/#slot-imported_from","text":"the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from","title":"Slot: imported_from"},{"location":"imported_from/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"imported_from/#properties","text":"Range: String","title":"Properties"},{"location":"imported_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"imported_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"imported_from/#linkml-source","text":"name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from domain_of: - common_metadata range: string","title":"LinkML Source"},{"location":"imports/","text":"Slot: imports other schemas that are included in this schema URI: linkml:imports Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports domain_of: - schema_definition range: uriorcurie","title":"Slot: imports"},{"location":"imports/#slot-imports","text":"other schemas that are included in this schema URI: linkml:imports","title":"Slot: imports"},{"location":"imports/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"imports/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"imports/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"imports/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"imports/#linkml-source","text":"name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports domain_of: - schema_definition range: uriorcurie","title":"LinkML Source"},{"location":"in_language/","text":"Slot: in_language URI: schema:inLanguage Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language domain_of: - common_metadata range: string","title":"Slot: in_language"},{"location":"in_language/#slot-in_language","text":"URI: schema:inLanguage","title":"Slot: in_language"},{"location":"in_language/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"in_language/#properties","text":"Range: String","title":"Properties"},{"location":"in_language/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"in_language/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"in_language/#linkml-source","text":"name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language domain_of: - common_metadata range: string","title":"LinkML Source"},{"location":"in_subset/","text":"Slot: in_subset used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: OIO:inSubset Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: SubsetDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset domain_of: - common_metadata range: subset_definition","title":"Slot: in_subset"},{"location":"in_subset/#slot-in_subset","text":"used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: OIO:inSubset","title":"Slot: in_subset"},{"location":"in_subset/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"in_subset/#properties","text":"Range: SubsetDefinition Multivalued: True","title":"Properties"},{"location":"in_subset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"in_subset/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"in_subset/#linkml-source","text":"name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset domain_of: - common_metadata range: subset_definition","title":"LinkML Source"},{"location":"inapplicable/","text":"Slot: inapplicable true means that the slot must not be present URI: linkml:inapplicable Properties Range: Boolean Comments By default all slots are applicable. The main use case for this slot is as an override in a subclass Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inapplicable description: true means that the slot must not be present comments: - By default all slots are applicable. The main use case for this slot is as an override in a subclass in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inapplicable range: boolean","title":"Slot: inapplicable"},{"location":"inapplicable/#slot-inapplicable","text":"true means that the slot must not be present URI: linkml:inapplicable","title":"Slot: inapplicable"},{"location":"inapplicable/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inapplicable/#comments","text":"By default all slots are applicable. The main use case for this slot is as an override in a subclass","title":"Comments"},{"location":"inapplicable/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inapplicable/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inapplicable/#linkml-source","text":"name: inapplicable description: true means that the slot must not be present comments: - By default all slots are applicable. The main use case for this slot is as an override in a subclass in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inapplicable range: boolean","title":"LinkML Source"},{"location":"include/","text":"Slot: include An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set URI: linkml:include Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: AnonymousEnumExpression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include domain_of: - enum_expression range: anonymous_enum_expression","title":"Slot: include"},{"location":"include/#slot-include","text":"An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set URI: linkml:include","title":"Slot: include"},{"location":"include/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"include/#properties","text":"Range: AnonymousEnumExpression Multivalued: True","title":"Properties"},{"location":"include/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"include/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"include/#linkml-source","text":"name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include domain_of: - enum_expression range: anonymous_enum_expression","title":"LinkML Source"},{"location":"include_self/","text":"Slot: include_self True if the query is reflexive URI: linkml:include_self Applicable Classes Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: Boolean Aliases reflexive Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self domain_of: - reachability_query range: boolean","title":"Slot: include_self"},{"location":"include_self/#slot-include_self","text":"True if the query is reflexive URI: linkml:include_self","title":"Slot: include_self"},{"location":"include_self/#applicable-classes","text":"Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"include_self/#properties","text":"Range: Boolean","title":"Properties"},{"location":"include_self/#aliases","text":"reflexive","title":"Aliases"},{"location":"include_self/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"include_self/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"include_self/#linkml-source","text":"name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self domain_of: - reachability_query range: boolean","title":"LinkML Source"},{"location":"inherited/","text":"Slot: inherited true means that the value of a slot is inherited by subclasses URI: linkml:inherited Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments Inherited applies to slot values. Parent slots are always inherited by subclasses Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited domain_of: - slot_definition range: boolean","title":"Slot: inherited"},{"location":"inherited/#slot-inherited","text":"true means that the value of a slot is inherited by subclasses URI: linkml:inherited","title":"Slot: inherited"},{"location":"inherited/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inherited/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inherited/#comments","text":"Inherited applies to slot values. Parent slots are always inherited by subclasses","title":"Comments"},{"location":"inherited/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inherited/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inherited/#linkml-source","text":"name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"inherits/","text":"Slot: inherits An enum definition that is used as the basis to create a new enum URI: linkml:inherits Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: EnumDefinition Multivalued: True Comments All permissible values for all inherited enums are copied to form the initial seed set Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits domain_of: - enum_expression range: enum_definition","title":"Slot: inherits"},{"location":"inherits/#slot-inherits","text":"An enum definition that is used as the basis to create a new enum URI: linkml:inherits","title":"Slot: inherits"},{"location":"inherits/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"inherits/#properties","text":"Range: EnumDefinition Multivalued: True","title":"Properties"},{"location":"inherits/#comments","text":"All permissible values for all inherited enums are copied to form the initial seed set","title":"Comments"},{"location":"inherits/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inherits/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inherits/#linkml-source","text":"name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits domain_of: - enum_expression range: enum_definition","title":"LinkML Source"},{"location":"inlined/","text":"Slot: inlined True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments classes without keys or identifiers are necessarily inlined as lists Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined domain_of: - slot_expression range: boolean","title":"Slot: inlined"},{"location":"inlined/#slot-inlined","text":"True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined","title":"Slot: inlined"},{"location":"inlined/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inlined/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inlined/#comments","text":"classes without keys or identifiers are necessarily inlined as lists","title":"Comments"},{"location":"inlined/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inlined/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inlined/#linkml-source","text":"name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined domain_of: - slot_expression range: boolean","title":"LinkML Source"},{"location":"inlined_as_list/","text":"Slot: inlined_as_list True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting. Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list domain_of: - slot_expression range: boolean","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#slot-inlined_as_list","text":"True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inlined_as_list/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inlined_as_list/#comments","text":"The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.","title":"Comments"},{"location":"inlined_as_list/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inlined_as_list/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inlined_as_list/#linkml-source","text":"name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list domain_of: - slot_expression range: boolean","title":"LinkML Source"},{"location":"interpolated/","text":"Slot: interpolated if true then the pattern is first string interpolated URI: linkml:interpolated Applicable Classes Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated domain_of: - pattern_expression range: boolean","title":"Slot: interpolated"},{"location":"interpolated/#slot-interpolated","text":"if true then the pattern is first string interpolated URI: linkml:interpolated","title":"Slot: interpolated"},{"location":"interpolated/#applicable-classes","text":"Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string","title":"Applicable Classes"},{"location":"interpolated/#properties","text":"Range: Boolean","title":"Properties"},{"location":"interpolated/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"interpolated/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"interpolated/#linkml-source","text":"name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated domain_of: - pattern_expression range: boolean","title":"LinkML Source"},{"location":"inverse/","text":"Slot: inverse indicates that any instance of d s r implies that there is also an instance of r s' d URI: owl:inverseOf Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: SlotDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse domain_of: - slot_definition range: slot_definition","title":"Slot: inverse"},{"location":"inverse/#slot-inverse","text":"indicates that any instance of d s r implies that there is also an instance of r s' d URI: owl:inverseOf","title":"Slot: inverse"},{"location":"inverse/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inverse/#properties","text":"Range: SlotDefinition","title":"Properties"},{"location":"inverse/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inverse/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inverse/#linkml-source","text":"name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse domain_of: - slot_definition range: slot_definition","title":"LinkML Source"},{"location":"irreflexive/","text":"Slot: irreflexive If s is irreflexive, then there exists no i such i.s=i URI: linkml:irreflexive Inheritance relational_logical_characteristic irreflexive Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive domain_of: - slot_definition range: boolean","title":"Slot: irreflexive"},{"location":"irreflexive/#slot-irreflexive","text":"If s is irreflexive, then there exists no i such i.s=i URI: linkml:irreflexive","title":"Slot: irreflexive"},{"location":"irreflexive/#inheritance","text":"relational_logical_characteristic irreflexive","title":"Inheritance"},{"location":"irreflexive/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"irreflexive/#properties","text":"Range: Boolean","title":"Properties"},{"location":"irreflexive/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"irreflexive/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"irreflexive/#linkml-source","text":"name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"is_a/","text":"Slot: is_a A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a Applicable Classes Name Description Definition abstract base class for core metaclasses AnonymousClassExpression EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Definition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a domain_of: - definition - anonymous_class_expression range: definition","title":"Slot: is_a"},{"location":"is_a/#slot-is_a","text":"A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a","title":"Slot: is_a"},{"location":"is_a/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses AnonymousClassExpression EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"is_a/#properties","text":"Range: Definition","title":"Properties"},{"location":"is_a/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_a/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_a/#linkml-source","text":"name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a domain_of: - definition - anonymous_class_expression range: definition","title":"LinkML Source"},{"location":"is_class_field/","text":"Slot: is_class_field indicates that for any instance, i, the domain of this slot will include an assertion of i s range URI: linkml:is_class_field Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field domain_of: - slot_definition range: boolean","title":"Slot: is_class_field"},{"location":"is_class_field/#slot-is_class_field","text":"indicates that for any instance, i, the domain of this slot will include an assertion of i s range URI: linkml:is_class_field","title":"Slot: is_class_field"},{"location":"is_class_field/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"is_class_field/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_class_field/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_class_field/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_class_field/#linkml-source","text":"name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"is_direct/","text":"Slot: is_direct True if the reachability query should only include directly related nodes, if False then include also transitively connected URI: linkml:is_direct Applicable Classes Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: Boolean Aliases non-transitive Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct domain_of: - reachability_query range: boolean","title":"Slot: is_direct"},{"location":"is_direct/#slot-is_direct","text":"True if the reachability query should only include directly related nodes, if False then include also transitively connected URI: linkml:is_direct","title":"Slot: is_direct"},{"location":"is_direct/#applicable-classes","text":"Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"is_direct/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_direct/#aliases","text":"non-transitive","title":"Aliases"},{"location":"is_direct/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_direct/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_direct/#linkml-source","text":"name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct domain_of: - reachability_query range: boolean","title":"LinkML Source"},{"location":"is_grouping_slot/","text":"Slot: is_grouping_slot true if this slot is a grouping slot URI: linkml:is_grouping_slot Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot domain_of: - slot_definition range: boolean","title":"Slot: is_grouping_slot"},{"location":"is_grouping_slot/#slot-is_grouping_slot","text":"true if this slot is a grouping slot URI: linkml:is_grouping_slot","title":"Slot: is_grouping_slot"},{"location":"is_grouping_slot/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"is_grouping_slot/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_grouping_slot/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_grouping_slot/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_grouping_slot/#linkml-source","text":"name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"is_usage_slot/","text":"Slot: is_usage_slot True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot domain_of: - slot_definition range: boolean","title":"Slot: is_usage_slot"},{"location":"is_usage_slot/#slot-is_usage_slot","text":"True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot","title":"Slot: is_usage_slot"},{"location":"is_usage_slot/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"is_usage_slot/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_usage_slot/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_usage_slot/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_usage_slot/#linkml-source","text":"name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"key/","text":"Slot: key True means that the key slot(s) uniquely identify the container. URI: linkml:key Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments see also 'unique_key' key is inherited a given domain can have at most one key slot (restriction to be removed in the future) identifiers and keys are mutually exclusive. A given domain cannot have both a key slot is automatically required. Keys cannot be optional Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. Keys cannot be optional in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: key domain_of: - slot_definition range: boolean","title":"Slot: key"},{"location":"key/#slot-key","text":"True means that the key slot(s) uniquely identify the container. URI: linkml:key","title":"Slot: key"},{"location":"key/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"key/#properties","text":"Range: Boolean","title":"Properties"},{"location":"key/#comments","text":"see also 'unique_key' key is inherited a given domain can have at most one key slot (restriction to be removed in the future) identifiers and keys are mutually exclusive. A given domain cannot have both a key slot is automatically required. Keys cannot be optional","title":"Comments"},{"location":"key/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"key/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"key/#linkml-source","text":"name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. Keys cannot be optional in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: key domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"keywords/","text":"Slot: keywords Keywords or tags used to describe the element URI: schema:keywords Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: keywords description: Keywords or tags used to describe the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: keyword domain: element slot_uri: schema:keywords multivalued: true alias: keywords domain_of: - schema_definition range: string","title":"Slot: keywords"},{"location":"keywords/#slot-keywords","text":"Keywords or tags used to describe the element URI: schema:keywords","title":"Slot: keywords"},{"location":"keywords/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"keywords/#properties","text":"Range: String Multivalued: True","title":"Properties"},{"location":"keywords/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"keywords/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"keywords/#linkml-source","text":"name: keywords description: Keywords or tags used to describe the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: keyword domain: element slot_uri: schema:keywords multivalued: true alias: keywords domain_of: - schema_definition range: string","title":"LinkML Source"},{"location":"last_updated_on/","text":"Slot: last_updated_on time at which the element was last updated URI: pav:lastUpdatedOn Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Datetime Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on domain_of: - definition range: datetime","title":"Slot: last_updated_on"},{"location":"last_updated_on/#slot-last_updated_on","text":"time at which the element was last updated URI: pav:lastUpdatedOn","title":"Slot: last_updated_on"},{"location":"last_updated_on/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"last_updated_on/#properties","text":"Range: Datetime","title":"Properties"},{"location":"last_updated_on/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"last_updated_on/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"last_updated_on/#linkml-source","text":"name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on domain_of: - definition range: datetime","title":"LinkML Source"},{"location":"license/","text":"Slot: license license for the schema URI: dcterms:license Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license domain_of: - schema_definition range: string","title":"Slot: license"},{"location":"license/#slot-license","text":"license for the schema URI: dcterms:license","title":"Slot: license"},{"location":"license/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"license/#properties","text":"Range: String","title":"Properties"},{"location":"license/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"license/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"license/#linkml-source","text":"name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license domain_of: - schema_definition range: string","title":"LinkML Source"},{"location":"list_elements_ordered/","text":"Slot: list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed URI: linkml:list_elements_ordered Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments should only be used with multivalued slots Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered domain_of: - slot_definition range: boolean","title":"Slot: list_elements_ordered"},{"location":"list_elements_ordered/#slot-list_elements_ordered","text":"If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed URI: linkml:list_elements_ordered","title":"Slot: list_elements_ordered"},{"location":"list_elements_ordered/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"list_elements_ordered/#properties","text":"Range: Boolean","title":"Properties"},{"location":"list_elements_ordered/#comments","text":"should only be used with multivalued slots","title":"Comments"},{"location":"list_elements_ordered/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"list_elements_ordered/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"list_elements_ordered/#linkml-source","text":"name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"list_elements_unique/","text":"Slot: list_elements_unique If True, then there must be no duplicates in the elements of a multivalued slot URI: linkml:list_elements_unique Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments should only be used with multivalued slots Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique domain_of: - slot_definition range: boolean","title":"Slot: list_elements_unique"},{"location":"list_elements_unique/#slot-list_elements_unique","text":"If True, then there must be no duplicates in the elements of a multivalued slot URI: linkml:list_elements_unique","title":"Slot: list_elements_unique"},{"location":"list_elements_unique/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"list_elements_unique/#properties","text":"Range: Boolean","title":"Properties"},{"location":"list_elements_unique/#comments","text":"should only be used with multivalued slots","title":"Comments"},{"location":"list_elements_unique/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"list_elements_unique/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"list_elements_unique/#linkml-source","text":"name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"list_value_specification_constant/","text":"Slot: list_value_specification_constant Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant URI: linkml:list_value_specification_constant Inheritance list_value_specification_constant value_presence equals_string equals_number equals_expression minimum_cardinality maximum_cardinality equals_string_in equals_number_in has_member all_members Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: list_value_specification_constant description: Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: list_value_specification_constant range: string","title":"Slot: list_value_specification_constant"},{"location":"list_value_specification_constant/#slot-list_value_specification_constant","text":"Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant URI: linkml:list_value_specification_constant","title":"Slot: list_value_specification_constant"},{"location":"list_value_specification_constant/#inheritance","text":"list_value_specification_constant value_presence equals_string equals_number equals_expression minimum_cardinality maximum_cardinality equals_string_in equals_number_in has_member all_members","title":"Inheritance"},{"location":"list_value_specification_constant/#properties","text":"Range: String","title":"Properties"},{"location":"list_value_specification_constant/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"list_value_specification_constant/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"list_value_specification_constant/#linkml-source","text":"name: list_value_specification_constant description: Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: list_value_specification_constant range: string","title":"LinkML Source"},{"location":"literal_form/","text":"Slot: literal_form The literal lexical form of a structured alias URI: skosxl:literalForm Applicable Classes Name Description StructuredAlias object that contains meta data about a synonym or alias including where it ca... Properties Range: String Required: True Aliases alias_name string_value Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form domain_of: - structured_alias range: string required: true","title":"Slot: literal_form"},{"location":"literal_form/#slot-literal_form","text":"The literal lexical form of a structured alias URI: skosxl:literalForm","title":"Slot: literal_form"},{"location":"literal_form/#applicable-classes","text":"Name Description StructuredAlias object that contains meta data about a synonym or alias including where it ca...","title":"Applicable Classes"},{"location":"literal_form/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"literal_form/#aliases","text":"alias_name string_value","title":"Aliases"},{"location":"literal_form/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"literal_form/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"literal_form/#linkml-source","text":"name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form domain_of: - structured_alias range: string required: true","title":"LinkML Source"},{"location":"local_name_source/","text":"Slot: local_name_source the ncname of the source of the name URI: linkml:local_name_source Applicable Classes Name Description LocalName an attributed label Properties Range: Ncname Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: local_name_source description: the ncname of the source of the name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name key: true alias: local_name_source domain_of: - local_name range: ncname","title":"Slot: local_name_source"},{"location":"local_name_source/#slot-local_name_source","text":"the ncname of the source of the name URI: linkml:local_name_source","title":"Slot: local_name_source"},{"location":"local_name_source/#applicable-classes","text":"Name Description LocalName an attributed label","title":"Applicable Classes"},{"location":"local_name_source/#properties","text":"Range: Ncname","title":"Properties"},{"location":"local_name_source/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"local_name_source/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"local_name_source/#linkml-source","text":"name: local_name_source description: the ncname of the source of the name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name key: true alias: local_name_source domain_of: - local_name range: ncname","title":"LinkML Source"},{"location":"local_name_value/","text":"Slot: local_name_value a name assigned to an element in a given ontology URI: skos:altLabel Applicable Classes Name Description LocalName an attributed label Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: local_name_value description: a name assigned to an element in a given ontology from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name slot_uri: skos:altLabel alias: local_name_value domain_of: - local_name range: string required: true","title":"Slot: local_name_value"},{"location":"local_name_value/#slot-local_name_value","text":"a name assigned to an element in a given ontology URI: skos:altLabel","title":"Slot: local_name_value"},{"location":"local_name_value/#applicable-classes","text":"Name Description LocalName an attributed label","title":"Applicable Classes"},{"location":"local_name_value/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"local_name_value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"local_name_value/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"local_name_value/#linkml-source","text":"name: local_name_value description: a name assigned to an element in a given ontology from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name slot_uri: skos:altLabel alias: local_name_value domain_of: - local_name range: string required: true","title":"LinkML Source"},{"location":"local_names/","text":"Slot: local_names URI: linkml:local_names Applicable Classes Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: LocalName Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names domain_of: - element range: local_name inlined: true","title":"Slot: local_names"},{"location":"local_names/#slot-local_names","text":"URI: linkml:local_names","title":"Slot: local_names"},{"location":"local_names/#applicable-classes","text":"Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"local_names/#properties","text":"Range: LocalName Multivalued: True","title":"Properties"},{"location":"local_names/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"local_names/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"local_names/#linkml-source","text":"name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names domain_of: - element range: local_name inlined: true","title":"LinkML Source"},{"location":"locally_reflexive/","text":"Slot: locally_reflexive If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i URI: linkml:locally_reflexive Inheritance relational_logical_characteristic locally_reflexive Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive domain_of: - slot_definition range: boolean","title":"Slot: locally_reflexive"},{"location":"locally_reflexive/#slot-locally_reflexive","text":"If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i URI: linkml:locally_reflexive","title":"Slot: locally_reflexive"},{"location":"locally_reflexive/#inheritance","text":"relational_logical_characteristic locally_reflexive","title":"Inheritance"},{"location":"locally_reflexive/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"locally_reflexive/#properties","text":"Range: Boolean","title":"Properties"},{"location":"locally_reflexive/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"locally_reflexive/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"locally_reflexive/#linkml-source","text":"name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"mappings/","text":"Slot: mappings A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. URI: skos:mappingRelation Inheritance mappings exact_mappings close_mappings related_mappings narrow_mappings broad_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uriorcurie Multivalued: True Aliases xrefs identifiers alternate identifiers alternate ids Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/mappings LinkML Source name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings domain_of: - common_metadata range: uriorcurie","title":"Slot: mappings"},{"location":"mappings/#slot-mappings","text":"A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. URI: skos:mappingRelation","title":"Slot: mappings"},{"location":"mappings/#inheritance","text":"mappings exact_mappings close_mappings related_mappings narrow_mappings broad_mappings","title":"Inheritance"},{"location":"mappings/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings domain_of: - common_metadata range: uriorcurie","title":"LinkML Source"},{"location":"matches/","text":"Slot: matches Specifies a match query that is used to calculate the list of permissible values URI: linkml:matches Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... 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Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by domain_of: - definition range: uriorcurie","title":"Slot: modified_by"},{"location":"modified_by/#slot-modified_by","text":"agent that modified the element URI: oslc:modifiedBy","title":"Slot: modified_by"},{"location":"modified_by/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... 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SlotExpression an expression that constrains the range of values a slot can take ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"none_of/#properties","text":"Range: Expression Multivalued: True","title":"Properties"},{"location":"none_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"none_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"none_of/#linkml-source","text":"name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression range: expression","title":"LinkML Source"},{"location":"notes/","text":"Slot: notes editorial notes about an element intended for internal consumption URI: skos:editorialNote Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... 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SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Definition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner domain_of: - slot_definition range: definition","title":"Slot: owner"},{"location":"owner/#slot-owner","text":"the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner","title":"Slot: owner"},{"location":"owner/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"owner/#properties","text":"Range: Definition","title":"Properties"},{"location":"owner/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"owner/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"owner/#linkml-source","text":"name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner domain_of: - slot_definition range: definition","title":"LinkML Source"},{"location":"partial_match/","text":"Slot: partial_match if true then the pattern must match the whole string, as if enclosed in ^...$ URI: linkml:partial_match Applicable Classes Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: partial_match domain_of: - pattern_expression range: boolean","title":"Slot: partial_match"},{"location":"partial_match/#slot-partial_match","text":"if true then the pattern must match the whole string, as if enclosed in ^...$ URI: linkml:partial_match","title":"Slot: partial_match"},{"location":"partial_match/#applicable-classes","text":"Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string","title":"Applicable Classes"},{"location":"partial_match/#properties","text":"Range: Boolean","title":"Properties"},{"location":"partial_match/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"partial_match/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"partial_match/#linkml-source","text":"name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: partial_match domain_of: - pattern_expression range: boolean","title":"LinkML Source"},{"location":"path_rule/","text":"Slot: path_rule a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts URI: linkml:path_rule Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: PathExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule domain_of: - slot_definition range: path_expression","title":"Slot: path_rule"},{"location":"path_rule/#slot-path_rule","text":"a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts URI: linkml:path_rule","title":"Slot: path_rule"},{"location":"path_rule/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"path_rule/#properties","text":"Range: PathExpression","title":"Properties"},{"location":"path_rule/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"path_rule/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"path_rule/#linkml-source","text":"name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule domain_of: - slot_definition range: path_expression","title":"LinkML Source"},{"location":"pattern/","text":"Slot: pattern the string value of the slot must conform to this regular expression expressed in the string URI: linkml:pattern Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern domain_of: - type_expression - slot_expression range: string","title":"Slot: pattern"},{"location":"pattern/#slot-pattern","text":"the string value of the slot must conform to this regular expression expressed in the string URI: linkml:pattern","title":"Slot: pattern"},{"location":"pattern/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"pattern/#properties","text":"Range: String","title":"Properties"},{"location":"pattern/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"pattern/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"pattern/#linkml-source","text":"name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"permissible_values/","text":"Slot: permissible_values A list of possible values for a slot range URI: linkml:permissible_values Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: PermissibleValue Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values domain_of: - enum_expression range: permissible_value inlined: true","title":"Slot: permissible_values"},{"location":"permissible_values/#slot-permissible_values","text":"A list of possible values for a slot range URI: linkml:permissible_values","title":"Slot: permissible_values"},{"location":"permissible_values/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"permissible_values/#properties","text":"Range: PermissibleValue Multivalued: True","title":"Properties"},{"location":"permissible_values/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"permissible_values/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"permissible_values/#linkml-source","text":"name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values domain_of: - enum_expression range: permissible_value inlined: true","title":"LinkML Source"},{"location":"postconditions/","text":"Slot: postconditions an expression that must hold for an instance of the class, if the preconditions hold URI: linkml:postconditions Applicable Classes Name Description ClassRule A rule that applies to instances of a class Properties Range: AnonymousClassExpression Aliases then head consequents Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: postconditions description: an expression that must hold for an instance of the class, if the preconditions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - then - head - consequents close_mappings: - swrl:body rank: 113 alias: postconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"Slot: postconditions"},{"location":"postconditions/#slot-postconditions","text":"an expression that must hold for an instance of the class, if the preconditions hold URI: linkml:postconditions","title":"Slot: postconditions"},{"location":"postconditions/#applicable-classes","text":"Name Description ClassRule A rule that applies to instances of a class","title":"Applicable Classes"},{"location":"postconditions/#properties","text":"Range: AnonymousClassExpression","title":"Properties"},{"location":"postconditions/#aliases","text":"then head consequents","title":"Aliases"},{"location":"postconditions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"postconditions/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"postconditions/#linkml-source","text":"name: postconditions description: an expression that must hold for an instance of the class, if the preconditions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - then - head - consequents close_mappings: - swrl:body rank: 113 alias: postconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"preconditions/","text":"Slot: preconditions an expression that must hold in order for the rule to be applicable to an instance URI: sh:condition Applicable Classes Name Description ClassRule A rule that applies to instances of a class Properties Range: AnonymousClassExpression Aliases if body antecedents Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"Slot: preconditions"},{"location":"preconditions/#slot-preconditions","text":"an expression that must hold in order for the rule to be applicable to an instance URI: sh:condition","title":"Slot: preconditions"},{"location":"preconditions/#applicable-classes","text":"Name Description ClassRule A rule that applies to instances of a class","title":"Applicable Classes"},{"location":"preconditions/#properties","text":"Range: AnonymousClassExpression","title":"Properties"},{"location":"preconditions/#aliases","text":"if body antecedents","title":"Aliases"},{"location":"preconditions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"preconditions/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"preconditions/#linkml-source","text":"name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"prefix_prefix/","text":"Slot: prefix_prefix the nsname (sans ':' for a given prefix) URI: sh:prefix Applicable Classes Name Description Prefix prefix URI tuple Properties Range: Ncname Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix domain_of: - prefix range: ncname","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#slot-prefix_prefix","text":"the nsname (sans ':' for a given prefix) URI: sh:prefix","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#applicable-classes","text":"Name Description Prefix prefix URI tuple","title":"Applicable Classes"},{"location":"prefix_prefix/#properties","text":"Range: Ncname","title":"Properties"},{"location":"prefix_prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"prefix_prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"prefix_prefix/#linkml-source","text":"name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix domain_of: - prefix range: ncname","title":"LinkML Source"},{"location":"prefix_reference/","text":"Slot: prefix_reference A URI associated with a given prefix URI: sh:namespace Applicable Classes Name Description Prefix prefix URI tuple Properties Range: Uri Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference domain_of: - prefix range: uri required: true","title":"Slot: prefix_reference"},{"location":"prefix_reference/#slot-prefix_reference","text":"A URI associated with a given prefix URI: sh:namespace","title":"Slot: prefix_reference"},{"location":"prefix_reference/#applicable-classes","text":"Name Description Prefix prefix URI tuple","title":"Applicable Classes"},{"location":"prefix_reference/#properties","text":"Range: Uri Required: True","title":"Properties"},{"location":"prefix_reference/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"prefix_reference/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"prefix_reference/#linkml-source","text":"name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference domain_of: - prefix range: uri required: true","title":"LinkML Source"},{"location":"prefixes/","text":"Slot: prefixes prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: sh:declare Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Prefix Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes domain_of: - schema_definition range: prefix inlined: true","title":"Slot: prefixes"},{"location":"prefixes/#slot-prefixes","text":"prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: sh:declare","title":"Slot: prefixes"},{"location":"prefixes/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"prefixes/#properties","text":"Range: Prefix Multivalued: True","title":"Properties"},{"location":"prefixes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"prefixes/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"prefixes/#linkml-source","text":"name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes domain_of: - schema_definition range: prefix inlined: true","title":"LinkML Source"},{"location":"publisher/","text":"Slot: publisher An entity responsible for making the resource available URI: dcterms:publisher Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: publisher description: An entity responsible for making the resource available in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:publisher alias: publisher range: uriorcurie","title":"Slot: publisher"},{"location":"publisher/#slot-publisher","text":"An entity responsible for making the resource available URI: dcterms:publisher","title":"Slot: publisher"},{"location":"publisher/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"publisher/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"publisher/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"publisher/#linkml-source","text":"name: publisher description: An entity responsible for making the resource available in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:publisher alias: publisher range: uriorcurie","title":"LinkML Source"},{"location":"pv_formula/","text":"Slot: pv_formula Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: PvFormulaOptions Comments you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula domain_of: - enum_expression range: pv_formula_options","title":"Slot: pv_formula"},{"location":"pv_formula/#slot-pv_formula","text":"Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula","title":"Slot: pv_formula"},{"location":"pv_formula/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"pv_formula/#properties","text":"Range: PvFormulaOptions","title":"Properties"},{"location":"pv_formula/#comments","text":"you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid","title":"Comments"},{"location":"pv_formula/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"pv_formula/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"pv_formula/#linkml-source","text":"name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula domain_of: - enum_expression range: pv_formula_options","title":"LinkML Source"},{"location":"range/","text":"Slot: range _defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 _ URI: linkml:range Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Element Aliases value domain Comments range is underspecified, as not all elements can appear as the range of a slot. Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: range description: \"defines the type of the object of the slot. Given the following slot\\ \\ definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n X:\\n \\ \\ S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range domain_of: - slot_expression range: element","title":"Slot: range"},{"location":"range/#slot-range","text":"_defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 _ URI: linkml:range","title":"Slot: range"},{"location":"range/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"range/#properties","text":"Range: Element","title":"Properties"},{"location":"range/#aliases","text":"value domain","title":"Aliases"},{"location":"range/#comments","text":"range is underspecified, as not all elements can appear as the range of a slot.","title":"Comments"},{"location":"range/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"range/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"range/#linkml-source","text":"name: range description: \"defines the type of the object of the slot. Given the following slot\\ \\ definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n X:\\n \\ \\ S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range domain_of: - slot_expression range: element","title":"LinkML Source"},{"location":"range_expression/","text":"Slot: range_expression A range that is described as a boolean expression combining existing ranges URI: linkml:range_expression Applicable Classes Name Description PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: AnonymousClassExpression Comments one use for this is being able to describe a range using any_of expressions, for example to combine two enums Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression","title":"Slot: range_expression"},{"location":"range_expression/#slot-range_expression","text":"A range that is described as a boolean expression combining existing ranges URI: linkml:range_expression","title":"Slot: range_expression"},{"location":"range_expression/#applicable-classes","text":"Name Description PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"range_expression/#properties","text":"Range: AnonymousClassExpression","title":"Properties"},{"location":"range_expression/#comments","text":"one use for this is being able to describe a range using any_of expressions, for example to combine two enums","title":"Comments"},{"location":"range_expression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"range_expression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"range_expression/#linkml-source","text":"name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression","title":"LinkML Source"},{"location":"rank/","text":"Slot: rank the relative order in which the element occurs, lower values are given precedence URI: sh:order Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions ClassRule A rule that applies to instances of a class Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Integer Aliases order precedence display order Comments the rank of an element does not affect the semantics Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank domain_of: - common_metadata - class_rule range: integer","title":"Slot: rank"},{"location":"rank/#slot-rank","text":"the relative order in which the element occurs, lower values are given precedence URI: sh:order","title":"Slot: rank"},{"location":"rank/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions ClassRule A rule that applies to instances of a class Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"rank/#properties","text":"Range: Integer","title":"Properties"},{"location":"rank/#aliases","text":"order precedence display order","title":"Aliases"},{"location":"rank/#comments","text":"the rank of an element does not affect the semantics","title":"Comments"},{"location":"rank/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"rank/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"rank/#linkml-source","text":"name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank domain_of: - common_metadata - class_rule range: integer","title":"LinkML Source"},{"location":"reachable_from/","text":"Slot: reachable_from Specifies a query for obtaining a list of permissible values based on graph reachability URI: linkml:reachable_from Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: ReachabilityQuery Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from domain_of: - enum_expression range: reachability_query","title":"Slot: reachable_from"},{"location":"reachable_from/#slot-reachable_from","text":"Specifies a query for obtaining a list of permissible values based on graph reachability URI: linkml:reachable_from","title":"Slot: reachable_from"},{"location":"reachable_from/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"reachable_from/#properties","text":"Range: ReachabilityQuery","title":"Properties"},{"location":"reachable_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reachable_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reachable_from/#linkml-source","text":"name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from domain_of: - enum_expression range: reachability_query","title":"LinkML Source"},{"location":"readonly/","text":"Slot: readonly If present, slot is read only. Text explains why URI: linkml:readonly Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly domain_of: - slot_definition range: string","title":"Slot: readonly"},{"location":"readonly/#slot-readonly","text":"If present, slot is read only. Text explains why URI: linkml:readonly","title":"Slot: readonly"},{"location":"readonly/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"readonly/#properties","text":"Range: String","title":"Properties"},{"location":"readonly/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"readonly/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"readonly/#linkml-source","text":"name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"recommended/","text":"Slot: recommended true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data See Also https://github.com/linkml/linkml/issues/177 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended domain_of: - slot_expression range: boolean","title":"Slot: recommended"},{"location":"recommended/#slot-recommended","text":"true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended","title":"Slot: recommended"},{"location":"recommended/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"recommended/#properties","text":"Range: Boolean","title":"Properties"},{"location":"recommended/#comments","text":"This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data","title":"Comments"},{"location":"recommended/#see-also","text":"https://github.com/linkml/linkml/issues/177","title":"See Also"},{"location":"recommended/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"recommended/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"recommended/#linkml-source","text":"name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended domain_of: - slot_expression range: boolean","title":"LinkML Source"},{"location":"reflexive/","text":"Slot: reflexive If s is reflexive, then i.s=i for all instances i URI: linkml:reflexive Inheritance relational_logical_characteristic reflexive Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive domain_of: - slot_definition range: boolean","title":"Slot: reflexive"},{"location":"reflexive/#slot-reflexive","text":"If s is reflexive, then i.s=i for all instances i URI: linkml:reflexive","title":"Slot: reflexive"},{"location":"reflexive/#inheritance","text":"relational_logical_characteristic reflexive","title":"Inheritance"},{"location":"reflexive/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"reflexive/#properties","text":"Range: Boolean","title":"Properties"},{"location":"reflexive/#comments","text":"it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive","title":"Comments"},{"location":"reflexive/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reflexive/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reflexive/#linkml-source","text":"name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"reflexive_transitive_form_of/","text":"Slot: reflexive_transitive_form_of transitive_form_of including the reflexive case URI: linkml:reflexive_transitive_form_of Inheritance transitive_form_of reflexive_transitive_form_of Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: SlotDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of domain_of: - slot_definition range: slot_definition","title":"Slot: reflexive_transitive_form_of"},{"location":"reflexive_transitive_form_of/#slot-reflexive_transitive_form_of","text":"transitive_form_of including the reflexive case URI: linkml:reflexive_transitive_form_of","title":"Slot: reflexive_transitive_form_of"},{"location":"reflexive_transitive_form_of/#inheritance","text":"transitive_form_of reflexive_transitive_form_of","title":"Inheritance"},{"location":"reflexive_transitive_form_of/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"reflexive_transitive_form_of/#properties","text":"Range: SlotDefinition","title":"Properties"},{"location":"reflexive_transitive_form_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reflexive_transitive_form_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reflexive_transitive_form_of/#linkml-source","text":"name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of domain_of: - slot_definition range: slot_definition","title":"LinkML Source"},{"location":"related_mappings/","text":"Slot: related_mappings A list of terms from different schemas or terminology systems that have related meaning. URI: skos:relatedMatch Inheritance mappings related_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... 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this should only be used on slots that are applicable to class that represent relationships - in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary - in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes from_schema: https://w3id.org/linkml/meta aliases: - reification_role rank: 1000 status: testing domain: slot_definition inherited: true alias: relational_role domain_of: - slot_definition range: relational_role_enum","title":"LinkML Source"},{"location":"relationship_types/","text":"Slot: relationship_types A list of relationship types (properties) that are used in a reachability query URI: linkml:relationship_types Applicable Classes Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... 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in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond - in the context of RDF, this should be used when instances of the class are `rdf:Statement`s - in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes from_schema: https://w3id.org/linkml/meta see_also: - rdf:Statement - https://patterns.dataincubator.org/book/qualified-relation.html aliases: - is_reified rank: 1000 status: testing domain: class_definition inherited: true alias: represents_relationship domain_of: - class_definition range: boolean","title":"LinkML Source"},{"location":"required/","text":"Slot: required true means that the slot must be present in the loaded definition URI: linkml:required Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required domain_of: - slot_expression range: boolean","title":"Slot: required"},{"location":"required/#slot-required","text":"true means that the slot must be present in the loaded definition URI: linkml:required","title":"Slot: required"},{"location":"required/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"required/#properties","text":"Range: Boolean","title":"Properties"},{"location":"required/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"required/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"required/#linkml-source","text":"name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required domain_of: - slot_expression range: boolean","title":"LinkML Source"},{"location":"reversed/","text":"Slot: reversed true if the slot is to be inversed URI: linkml:reversed Applicable Classes Name Description PathExpression An expression that describes an abstract path from an object to another throu... Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed domain_of: - path_expression range: boolean","title":"Slot: reversed"},{"location":"reversed/#slot-reversed","text":"true if the slot is to be inversed URI: linkml:reversed","title":"Slot: reversed"},{"location":"reversed/#applicable-classes","text":"Name Description PathExpression An expression that describes an abstract path from an object to another throu...","title":"Applicable Classes"},{"location":"reversed/#properties","text":"Range: Boolean","title":"Properties"},{"location":"reversed/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reversed/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reversed/#linkml-source","text":"name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed domain_of: - path_expression range: boolean","title":"LinkML Source"},{"location":"role/","text":"Slot: role a textual descriptor that indicates the role played by the slot range URI: linkml:role Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Comments the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role domain_of: - slot_definition range: string","title":"Slot: role"},{"location":"role/#slot-role","text":"a textual descriptor that indicates the role played by the slot range URI: linkml:role","title":"Slot: role"},{"location":"role/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"role/#properties","text":"Range: String","title":"Properties"},{"location":"role/#comments","text":"the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class","title":"Comments"},{"location":"role/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"role/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"role/#linkml-source","text":"name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"rules/","text":"Slot: rules the collection of rules that apply to all members of this class URI: sh:rule Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... 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setting range: ncname","title":"LinkML Source"},{"location":"setting_value/","text":"Slot: setting_value The value assigned for a setting URI: linkml:setting_value Applicable Classes Name Description Setting assignment of a key to a value Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value domain_of: - setting range: string required: true","title":"Slot: setting_value"},{"location":"setting_value/#slot-setting_value","text":"The value assigned for a setting URI: linkml:setting_value","title":"Slot: setting_value"},{"location":"setting_value/#applicable-classes","text":"Name Description Setting assignment of a key to a value","title":"Applicable Classes"},{"location":"setting_value/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"setting_value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"setting_value/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"setting_value/#linkml-source","text":"name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value domain_of: - setting range: string required: true","title":"LinkML Source"},{"location":"settings/","text":"Slot: settings A collection of global variable settings URI: linkml:settings Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Setting Multivalued: True Comments global variables are used in string interpolation Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: settings description: A collection of global variable settings comments: - global variables are used in string interpolation in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 20 domain: schema_definition multivalued: true alias: settings domain_of: - schema_definition range: setting inlined: true","title":"Slot: settings"},{"location":"settings/#slot-settings","text":"A collection of global variable settings URI: linkml:settings","title":"Slot: settings"},{"location":"settings/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"settings/#properties","text":"Range: Setting Multivalued: True","title":"Properties"},{"location":"settings/#comments","text":"global variables are used in string interpolation","title":"Comments"},{"location":"settings/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"settings/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"settings/#linkml-source","text":"name: settings description: A collection of global variable settings comments: - 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slot_definition range: boolean","title":"Slot: shared"},{"location":"shared/#slot-shared","text":"If True, then the relationship between the slot domain and range is many to one or many to many URI: linkml:shared","title":"Slot: shared"},{"location":"shared/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"shared/#properties","text":"Range: Boolean","title":"Properties"},{"location":"shared/#aliases","text":"inverse functional many to one or many","title":"Aliases"},{"location":"shared/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"shared/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"shared/#linkml-source","text":"name: shared description: If True, then the relationship between the slot domain and range is many to one or many to many in_subset: - 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SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: sh:group alias: slot_group domain_of: - slot_definition range: slot_definition range_expression: slot_conditions: is_grouping_slot: name: is_grouping_slot equals_expression: 'True'","title":"LinkML Source"},{"location":"slot_names_unique/","text":"Slot: slot_names_unique if true then induced/mangled slot names are not created for class_usage and attributes URI: linkml:slot_names_unique Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... 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ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: Uriorcurie Aliases terminology vocabulary Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: source_ontology description: An ontology or vocabulary or terminology that is used in a query to obtain a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - terminology - vocabulary rank: 1000 alias: source_ontology domain_of: - match_query - reachability_query range: uriorcurie","title":"Slot: source_ontology"},{"location":"source_ontology/#slot-source_ontology","text":"An ontology or vocabulary or terminology that is used in a query to obtain a set of permissible values URI: linkml:source_ontology","title":"Slot: source_ontology"},{"location":"source_ontology/#applicable-classes","text":"Name Description MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"source_ontology/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"source_ontology/#aliases","text":"terminology vocabulary","title":"Aliases"},{"location":"source_ontology/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"source_ontology/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"source_ontology/#linkml-source","text":"name: source_ontology description: An ontology or vocabulary or terminology that is used in a query to obtain a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - terminology - vocabulary rank: 1000 alias: source_ontology domain_of: - match_query - reachability_query range: uriorcurie","title":"LinkML Source"},{"location":"status/","text":"Slot: status status of the element URI: bibo:status Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Aliases workflow status Examples Value bibo:draft See Also https://www.hl7.org/fhir/valueset-publication-status.html https://www.hl7.org/fhir/versions.html#std-process Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status domain_of: - definition range: uriorcurie","title":"Slot: status"},{"location":"status/#slot-status","text":"status of the element URI: bibo:status","title":"Slot: status"},{"location":"status/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"status/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"status/#aliases","text":"workflow status","title":"Aliases"},{"location":"status/#examples","text":"Value bibo:draft","title":"Examples"},{"location":"status/#see-also","text":"https://www.hl7.org/fhir/valueset-publication-status.html https://www.hl7.org/fhir/versions.html#std-process","title":"See Also"},{"location":"status/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"status/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"status/#linkml-source","text":"name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status domain_of: - definition range: uriorcurie","title":"LinkML Source"},{"location":"string_serialization/","text":"Slot: string_serialization Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: String See Also https://github.com/linkml/issues/128 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization domain_of: - definition range: string","title":"Slot: string_serialization"},{"location":"string_serialization/#slot-string_serialization","text":"Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization","title":"Slot: string_serialization"},{"location":"string_serialization/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"string_serialization/#properties","text":"Range: String","title":"Properties"},{"location":"string_serialization/#see-also","text":"https://github.com/linkml/issues/128","title":"See Also"},{"location":"string_serialization/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"string_serialization/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"string_serialization/#linkml-source","text":"name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization domain_of: - definition range: string","title":"LinkML Source"},{"location":"structured_aliases/","text":"Slot: structured_aliases A list of structured_alias objects. URI: skosxl:altLabel Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: StructuredAlias Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases domain_of: - common_metadata range: structured_alias inlined: true","title":"Slot: structured_aliases"},{"location":"structured_aliases/#slot-structured_aliases","text":"A list of structured_alias objects. URI: skosxl:altLabel","title":"Slot: structured_aliases"},{"location":"structured_aliases/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"structured_aliases/#properties","text":"Range: StructuredAlias Multivalued: True","title":"Properties"},{"location":"structured_aliases/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"structured_aliases/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"structured_aliases/#linkml-source","text":"name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases domain_of: - common_metadata range: structured_alias inlined: true","title":"LinkML Source"},{"location":"structured_imports/","text":"Slot: structured_imports other schemas that are included in this schema URI: linkml:structured_imports Properties Range: ImportExpression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: structured_imports description: other schemas that are included in this schema from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: structured_imports range: import_expression","title":"Slot: structured_imports"},{"location":"structured_imports/#slot-structured_imports","text":"other schemas that are included in this schema URI: linkml:structured_imports","title":"Slot: structured_imports"},{"location":"structured_imports/#properties","text":"Range: ImportExpression Multivalued: True","title":"Properties"},{"location":"structured_imports/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"structured_imports/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"structured_imports/#linkml-source","text":"name: structured_imports description: other schemas that are included in this schema from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: structured_imports range: import_expression","title":"LinkML Source"},{"location":"structured_pattern/","text":"Slot: structured_pattern the string value of the slot must conform to the regular expression in the pattern expression URI: linkml:structured_pattern Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: PatternExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern domain_of: - type_expression - slot_expression range: pattern_expression","title":"Slot: structured_pattern"},{"location":"structured_pattern/#slot-structured_pattern","text":"the string value of the slot must conform to the regular expression in the pattern expression URI: linkml:structured_pattern","title":"Slot: structured_pattern"},{"location":"structured_pattern/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"structured_pattern/#properties","text":"Range: PatternExpression","title":"Properties"},{"location":"structured_pattern/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"structured_pattern/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"structured_pattern/#linkml-source","text":"name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern domain_of: - type_expression - slot_expression range: pattern_expression","title":"LinkML Source"},{"location":"subclass_of/","text":"Slot: subclass_of rdfs:subClassOf to be emitted in OWL generation URI: rdfs:subClassOf Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of domain_of: - class_definition range: uriorcurie","title":"Slot: subclass_of"},{"location":"subclass_of/#slot-subclass_of","text":"rdfs:subClassOf to be emitted in OWL generation URI: rdfs:subClassOf","title":"Slot: subclass_of"},{"location":"subclass_of/#applicable-classes","text":"Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"subclass_of/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"subclass_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"subclass_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"subclass_of/#linkml-source","text":"name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of domain_of: - class_definition range: uriorcurie","title":"LinkML Source"},{"location":"subproperty_of/","text":"Slot: subproperty_of Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: rdfs:subPropertyOf Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: SlotDefinition Examples Value RO:HOM0000001 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of domain_of: - slot_definition range: slot_definition","title":"Slot: subproperty_of"},{"location":"subproperty_of/#slot-subproperty_of","text":"Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: rdfs:subPropertyOf","title":"Slot: subproperty_of"},{"location":"subproperty_of/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"subproperty_of/#properties","text":"Range: SlotDefinition","title":"Properties"},{"location":"subproperty_of/#examples","text":"Value RO:HOM0000001","title":"Examples"},{"location":"subproperty_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"subproperty_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"subproperty_of/#linkml-source","text":"name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of domain_of: - slot_definition range: slot_definition","title":"LinkML Source"},{"location":"subsets/","text":"Slot: subsets An index to the collection of all subset definitions in the schema URI: linkml:subsets Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: SubsetDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets domain_of: - schema_definition range: subset_definition inlined: true","title":"Slot: subsets"},{"location":"subsets/#slot-subsets","text":"An index to the collection of all subset definitions in the schema URI: linkml:subsets","title":"Slot: subsets"},{"location":"subsets/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"subsets/#properties","text":"Range: SubsetDefinition Multivalued: True","title":"Properties"},{"location":"subsets/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"subsets/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"subsets/#linkml-source","text":"name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets domain_of: - schema_definition range: subset_definition inlined: true","title":"LinkML Source"},{"location":"symbol/","text":"Slot: symbol name of the unit encoded as a symbol URI: qudt:symbol Applicable Classes Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: symbol description: name of the unit encoded as a symbol from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:symbol alias: symbol domain_of: - UnitOfMeasure range: string","title":"Slot: symbol"},{"location":"symbol/#slot-symbol","text":"name of the unit encoded as a symbol URI: qudt:symbol","title":"Slot: symbol"},{"location":"symbol/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"symbol/#properties","text":"Range: String","title":"Properties"},{"location":"symbol/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"symbol/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"symbol/#linkml-source","text":"name: symbol description: name of the unit encoded as a symbol from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:symbol alias: symbol domain_of: - UnitOfMeasure range: string","title":"LinkML Source"},{"location":"symmetric/","text":"Slot: symmetric If s is symmetric, and i.s=v, then v.s=i URI: linkml:symmetric Inheritance relational_logical_characteristic symmetric Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric domain_of: - slot_definition range: boolean","title":"Slot: symmetric"},{"location":"symmetric/#slot-symmetric","text":"If s is symmetric, and i.s=v, then v.s=i URI: linkml:symmetric","title":"Slot: symmetric"},{"location":"symmetric/#inheritance","text":"relational_logical_characteristic symmetric","title":"Inheritance"},{"location":"symmetric/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"symmetric/#properties","text":"Range: Boolean","title":"Properties"},{"location":"symmetric/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"symmetric/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"symmetric/#linkml-source","text":"name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"syntax/","text":"Slot: syntax the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. URI: linkml:syntax Applicable Classes Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax domain_of: - pattern_expression range: string","title":"Slot: syntax"},{"location":"syntax/#slot-syntax","text":"the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. URI: linkml:syntax","title":"Slot: syntax"},{"location":"syntax/#applicable-classes","text":"Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string","title":"Applicable Classes"},{"location":"syntax/#properties","text":"Range: String","title":"Properties"},{"location":"syntax/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"syntax/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"syntax/#linkml-source","text":"name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax domain_of: - pattern_expression range: string","title":"LinkML Source"},{"location":"text/","text":"Slot: text URI: linkml:text Applicable Classes Name Description PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... Properties Range: String Aliases value Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text domain_of: - permissible_value range: string","title":"Slot: text"},{"location":"text/#slot-text","text":"URI: linkml:text","title":"Slot: text"},{"location":"text/#applicable-classes","text":"Name Description PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ...","title":"Applicable Classes"},{"location":"text/#properties","text":"Range: String","title":"Properties"},{"location":"text/#aliases","text":"value","title":"Aliases"},{"location":"text/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"text/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"text/#linkml-source","text":"name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text domain_of: - permissible_value range: string","title":"LinkML Source"},{"location":"title/","text":"Slot: title the official title of the element URI: dcterms:title Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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Unique keys may be singular or compound. in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta exact_mappings: - owl:hasKey rank: 1000 domain: class_definition multivalued: true alias: unique_keys domain_of: - class_definition range: unique_key inlined: true","title":"LinkML Source"},{"location":"unit/","text":"Slot: unit an encoding of a unit URI: qudt:unit Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... 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AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"unit/#properties","text":"Range: UnitOfMeasure","title":"Properties"},{"location":"unit/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"unit/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"unit/#linkml-source","text":"name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure","title":"LinkML Source"},{"location":"units/","text":"units Units datamodel URI: https://w3id.org/linkml/units","title":"units"},{"location":"units/#units","text":"Units datamodel URI: https://w3id.org/linkml/units","title":"units"},{"location":"usage_slot_name/","text":"Slot: usage_slot_name The name of the slot referenced in the slot_usage URI: linkml:usage_slot_name Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name domain_of: - slot_definition range: string","title":"Slot: usage_slot_name"},{"location":"usage_slot_name/#slot-usage_slot_name","text":"The name of the slot referenced in the slot_usage URI: linkml:usage_slot_name","title":"Slot: usage_slot_name"},{"location":"usage_slot_name/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"usage_slot_name/#properties","text":"Range: String","title":"Properties"},{"location":"usage_slot_name/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"usage_slot_name/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"usage_slot_name/#linkml-source","text":"name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"value/","text":"Slot: value example value URI: skos:example Applicable Classes Name Description Example usage example and description Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value description: example value in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example slot_uri: skos:example alias: value domain_of: - example range: string","title":"Slot: value"},{"location":"value/#slot-value","text":"example value URI: skos:example","title":"Slot: value"},{"location":"value/#applicable-classes","text":"Name Description Example usage example and description","title":"Applicable Classes"},{"location":"value/#properties","text":"Range: String","title":"Properties"},{"location":"value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value/#linkml-source","text":"name: value description: example value in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example slot_uri: skos:example alias: value domain_of: - example range: string","title":"LinkML Source"},{"location":"value_description/","text":"Slot: value_description description of what the value is doing URI: linkml:value_description Applicable Classes Name Description Example usage example and description Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value_description description: description of what the value is doing in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example alias: description domain_of: - example range: string","title":"Slot: value_description"},{"location":"value_description/#slot-value_description","text":"description of what the value is doing URI: linkml:value_description","title":"Slot: value_description"},{"location":"value_description/#applicable-classes","text":"Name Description Example usage example and description","title":"Applicable Classes"},{"location":"value_description/#properties","text":"Range: String","title":"Properties"},{"location":"value_description/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value_description/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value_description/#linkml-source","text":"name: value_description description: description of what the value is doing in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example alias: description domain_of: - example range: string","title":"LinkML Source"},{"location":"value_presence/","text":"Slot: value_presence if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) URI: linkml:value_presence Inheritance list_value_specification_constant value_presence Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: PresenceEnum Comments if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence domain_of: - slot_expression range: presence_enum","title":"Slot: value_presence"},{"location":"value_presence/#slot-value_presence","text":"if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) URI: linkml:value_presence","title":"Slot: value_presence"},{"location":"value_presence/#inheritance","text":"list_value_specification_constant value_presence","title":"Inheritance"},{"location":"value_presence/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"value_presence/#properties","text":"Range: PresenceEnum","title":"Properties"},{"location":"value_presence/#comments","text":"if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present","title":"Comments"},{"location":"value_presence/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value_presence/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value_presence/#linkml-source","text":"name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence domain_of: - slot_expression range: presence_enum","title":"LinkML Source"},{"location":"value_specification_constant/","text":"Slot: value_specification_constant Grouping for metamodel slots that constrain the a slot value to equal a specified constant URI: linkml:value_specification_constant Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value_specification_constant description: Grouping for metamodel slots that constrain the a slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: value_specification_constant range: string","title":"Slot: value_specification_constant"},{"location":"value_specification_constant/#slot-value_specification_constant","text":"Grouping for metamodel slots that constrain the a slot value to equal a specified constant URI: linkml:value_specification_constant","title":"Slot: value_specification_constant"},{"location":"value_specification_constant/#properties","text":"Range: String","title":"Properties"},{"location":"value_specification_constant/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value_specification_constant/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value_specification_constant/#linkml-source","text":"name: value_specification_constant description: Grouping for metamodel slots that constrain the a slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: value_specification_constant range: string","title":"LinkML Source"},{"location":"values_from/","text":"Slot: values_from The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than 'subproperty_of' in that 'subproperty_of' is intended to be a single ontology term while 'values_from' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: linkml:values_from Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from domain_of: - definition range: uriorcurie","title":"Slot: values_from"},{"location":"values_from/#slot-values_from","text":"The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than 'subproperty_of' in that 'subproperty_of' is intended to be a single ontology term while 'values_from' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: linkml:values_from","title":"Slot: values_from"},{"location":"values_from/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"values_from/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"values_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"values_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"values_from/#linkml-source","text":"name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from domain_of: - definition range: uriorcurie","title":"LinkML Source"},{"location":"version/","text":"Slot: version particular version of schema URI: pav:version Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version domain_of: - schema_definition range: string","title":"Slot: version"},{"location":"version/#slot-version","text":"particular version of schema URI: pav:version","title":"Slot: version"},{"location":"version/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"version/#properties","text":"Range: String","title":"Properties"},{"location":"version/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"version/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"version/#linkml-source","text":"name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version domain_of: - schema_definition range: string","title":"LinkML Source"}]}
\ No newline at end of file
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Core metaclasses: SchemaDefinition ClassDefinition SlotDefinition TypeDefinition There are many subsets of profiles of the metamodel, for different purposes: MinimalSubset BasicSubset BasicSubset For canonical reference documentation on any metamodel construct, refer to the official URI for each construct, e.g. https://w3id.org/linkml/is_a URI: https://w3id.org/linkml/meta Name: meta Classes Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class CommonMetadata Generic metadata shared across definitions Element a named element in the model TypeExpression AnonymousTypeExpression Definition abstract base class for core metaclasses EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... StructuredAlias object that contains meta data about a synonym or alias including where it ca... Expression general mixin for any class that can represent some form of expression AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousClassExpression ClassLevelRule A rule that is applied to classes ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import Setting assignment of a key to a value LocalName an attributed label Example usage example and description AltDescription an attributed description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... 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definitions in the schema identifier True means that the key slot(s) uniquely identify the container types An index to the collection of all type definitions in the schema alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary 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hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element definition_uri the \"native\" URI of the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... structured_aliases A list of structured_alias objects aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external consumption in_subset used to indicate membership of a term in a defined subset of terms used for a... from_schema id of the schema that defined the element imported_from the imports entry that this element was derived from see_also a reference owned_by agent that owns or is the steward of the element created_by agent that created the element created_on time at which the element was created last_updated_on time at which the element was last updated modified_by agent that modified the element status status of the element literal_form The literal lexical form of a structured alias alias_predicate The relationship between an element and its alias in_language source A related resource from which the element is derived publisher An entity responsible for making the resource available abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... apply_to Used to extend class or slot definitions values_from The identifier of a \"value set\" -- a set of identifiers that form the possibl... code_set the identifier of an enumeration code set code_set_version the version identifier of the enumeration code set code_set_tag the version tag of the enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query emit_prefixes a list of Curie prefixes that are used in the representation of instances of ... version particular version of schema structured_imports other schemas that are included in this schema default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version Version of the metamodel used to load the schema source_file name, uri or description of the source of the schema source_file_date modification date of the source of the schema source_file_size size in bytes of the source of the schema generation_date date and time that the schema was loaded/generated enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges boolean_slot A grouping of slots that expression a boolean operator over a list of operand... bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... deactivated a deactivated rule is not executed by the rules engine rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression subclass_of rdfs:subClassOf to be emitted in OWL generation defining_slots The combination of is a plus defining slots form a genus-differentia definiti... union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key slot_names_unique if true then induced/mangled slot names are not created for class_usage and a... domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses readonly If present, slot is read only ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... value_specification_constant Grouping for metamodel slots that constrain the a slot value to equal a speci... list_value_specification_constant Grouping for metamodel slots that constrain members of a multivalued slot val... value_presence if true then a value must be present (for lists there must be at least one va... equals_string the slot must have range string and the value of the slot must equal the spec... equals_number the slot must have range of a number and the value of the slot must equal the... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... singular_name a name that is used in the singular form inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... owner the \"owner\" of the slot domain_of the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context is_usage_slot True means that this slot was defined in a slot_usage situation usage_slot_name The name of the slot referenced in the slot_usage subproperty_of Ontology property which this slot is a subproperty of disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... children_are_mutually_disjoint If true then all direct is_a children are mutually disjoint and share no inst... relational_logical_characteristic A property of a slot that pertains to its logical properties symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... is_class_field indicates that for any instance, i, the domain of this slot will include an a... role a textual descriptor that indicates the role played by the slot range minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... interpolated if true then the pattern is first string interpolated partial_match if true then the pattern must match the whole string, as if enclosed in ^ syntax the string value of the slot must conform to this regular expression expresse... structured_pattern the string value of the slot must conform to the regular expression in the pa... string_serialization Used on a slot that stores the string serialization of the containing object alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element setting_key the variable name for a setting setting_value The value assigned for a setting import_from import_as import_map local_name_source the ncname of the source of the name local_name_value a name assigned to an element in a given ontology local_names slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot followed_by in a sequential list, this indicates the next member reversed true if the slot is to be inversed traverse the slot to traverse path_rule a rule for inferring a slot assignment based on evaluating a path through a s... represents_relationship true if this class represents a relationship rather than an entity relational_role the role a slot on a relationship class plays, for example, the subject, obje... unit an encoding of a unit ucum_code associates a QUDT unit with its UCUM code (case-sensitive) derivation Expression for deriving this unit from other units has_quantity_kind Concept in a vocabulary or ontology that denotes the kind of quanity being me... iec61360code symbol name of the unit encoded as a symbol mappings A list of terms from different schemas or terminology systems that have compa... exact_mappings A list of terms from different schemas or terminology systems that have ident... close_mappings A list of terms from different schemas or terminology systems that have close... related_mappings A list of terms from different schemas or terminology systems that have relat... narrow_mappings A list of terms from different schemas or terminology systems that have narro... broad_mappings A list of terms from different schemas or terminology systems that have broad... deprecated_element_has_exact_replacement When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement When an element is deprecated, it can be potentially replaced by this uri or ... annotations a collection of tag/text tuples with the semantics of OWL Annotation extensions a tag/text tuple attached to an arbitrary element extension_tag a tag associated with an extension extension_value the actual annotation Enumerations Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ... RelationalRoleEnum enumeration of roles a slot on a relationship class can play AliasPredicateEnum PresenceEnum enumeration of conditions by which a slot value should be set Types Type Description String A character string Integer An integer Boolean A binary (true or false) value Float A real number that conforms to the xsd:float specification Double A real number that conforms to the xsd:double specification Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Time A time object represents a (local) time of day, independent of any particular... Date a date (year, month and day) in an idealized calendar Datetime The combination of a date and time DateOrDatetime Either a date or a datetime Uriorcurie a URI or a CURIE Uri a complete URI Ncname Prefix part of CURIE Objectidentifier A URI or CURIE that represents an object in the model Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Subsets Subset Description BasicSubset An extension of MinimalSubset that avoids advanced constructs and can be impl... MinimalSubset The absolute minimal set of elements necessary for defining any schema ObjectOrientedProfile A profile that includes all the metamodel elements whose semantics can be exp... OwlProfile A profile that includes all the metamodel elements whose semantics can be exp... RelationalModelProfile A profile that includes all the metamodel elements whose semantics can be exp... SpecificationSubset A subset that includes all the metamodel elements that form part of the norma...","title":"Metamodel Index"},{"location":"#linkml-schema-metamodel","text":"The metamodel for schemas defined using the Linked Data Modeling Language framework. For more information on LinkML: linkml.io main website specification LinkML is self-describing. Every LinkML schema consists of elements that instantiate classes in this metamodel. Core metaclasses: SchemaDefinition ClassDefinition SlotDefinition TypeDefinition There are many subsets of profiles of the metamodel, for different purposes: MinimalSubset BasicSubset BasicSubset For canonical reference documentation on any metamodel construct, refer to the official URI for each construct, e.g. https://w3id.org/linkml/is_a URI: https://w3id.org/linkml/meta Name: meta","title":"LinkML Schema Metamodel"},{"location":"#classes","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class CommonMetadata Generic metadata shared across definitions Element a named element in the model TypeExpression AnonymousTypeExpression Definition abstract base class for core metaclasses EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... StructuredAlias object that contains meta data about a synonym or alias including where it ca... Expression general mixin for any class that can represent some form of expression AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousClassExpression ClassLevelRule A rule that is applied to classes ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import Setting assignment of a key to a value LocalName an attributed label Example usage example and description AltDescription an attributed description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Annotatable mixin for classes that support annotations Annotation a tag/value pair with the semantics of OWL Annotation Extension a tag/value pair used to add non-model information to an entry Extensible mixin for classes that support extension","title":"Classes"},{"location":"#slots","text":"Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix title the official title of the element classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema description a description of the element's purpose and use enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container types An index to the collection of all type definitions in the schema alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class settings A collection of global variable settings text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots license license for the schema tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... any_of holds if at least one of the expressions hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element definition_uri the \"native\" URI of the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... structured_aliases A list of structured_alias objects aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external consumption in_subset used to indicate membership of a term in a defined subset of terms used for a... from_schema id of the schema that defined the element imported_from the imports entry that this element was derived from see_also a reference owned_by agent that owns or is the steward of the element created_by agent that created the element created_on time at which the element was created last_updated_on time at which the element was last updated modified_by agent that modified the element status status of the element literal_form The literal lexical form of a structured alias alias_predicate The relationship between an element and its alias in_language source A related resource from which the element is derived publisher An entity responsible for making the resource available abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... apply_to Used to extend class or slot definitions values_from The identifier of a \"value set\" -- a set of identifiers that form the possibl... code_set the identifier of an enumeration code set code_set_version the version identifier of the enumeration code set code_set_tag the version tag of the enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query emit_prefixes a list of Curie prefixes that are used in the representation of instances of ... version particular version of schema structured_imports other schemas that are included in this schema default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version Version of the metamodel used to load the schema source_file name, uri or description of the source of the schema source_file_date modification date of the source of the schema source_file_size size in bytes of the source of the schema generation_date date and time that the schema was loaded/generated enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges boolean_slot A grouping of slots that expression a boolean operator over a list of operand... bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... deactivated a deactivated rule is not executed by the rules engine rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression subclass_of rdfs:subClassOf to be emitted in OWL generation defining_slots The combination of is a plus defining slots form a genus-differentia definiti... union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key slot_names_unique if true then induced/mangled slot names are not created for class_usage and a... domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses readonly If present, slot is read only ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... value_specification_constant Grouping for metamodel slots that constrain the a slot value to equal a speci... list_value_specification_constant Grouping for metamodel slots that constrain members of a multivalued slot val... value_presence if true then a value must be present (for lists there must be at least one va... equals_string the slot must have range string and the value of the slot must equal the spec... equals_number the slot must have range of a number and the value of the slot must equal the... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... singular_name a name that is used in the singular form inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... owner the \"owner\" of the slot domain_of the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context is_usage_slot True means that this slot was defined in a slot_usage situation usage_slot_name The name of the slot referenced in the slot_usage subproperty_of Ontology property which this slot is a subproperty of disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... children_are_mutually_disjoint If true then all direct is_a children are mutually disjoint and share no inst... relational_logical_characteristic A property of a slot that pertains to its logical properties symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... is_class_field indicates that for any instance, i, the domain of this slot will include an a... role a textual descriptor that indicates the role played by the slot range minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... interpolated if true then the pattern is first string interpolated partial_match if true then the pattern must match the whole string, as if enclosed in ^ syntax the string value of the slot must conform to this regular expression expresse... structured_pattern the string value of the slot must conform to the regular expression in the pa... string_serialization Used on a slot that stores the string serialization of the containing object alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element setting_key the variable name for a setting setting_value The value assigned for a setting import_from import_as import_map local_name_source the ncname of the source of the name local_name_value a name assigned to an element in a given ontology local_names slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot followed_by in a sequential list, this indicates the next member reversed true if the slot is to be inversed traverse the slot to traverse path_rule a rule for inferring a slot assignment based on evaluating a path through a s... represents_relationship true if this class represents a relationship rather than an entity relational_role the role a slot on a relationship class plays, for example, the subject, obje... unit an encoding of a unit ucum_code associates a QUDT unit with its UCUM code (case-sensitive) derivation Expression for deriving this unit from other units has_quantity_kind Concept in a vocabulary or ontology that denotes the kind of quanity being me... iec61360code symbol name of the unit encoded as a symbol mappings A list of terms from different schemas or terminology systems that have compa... exact_mappings A list of terms from different schemas or terminology systems that have ident... close_mappings A list of terms from different schemas or terminology systems that have close... related_mappings A list of terms from different schemas or terminology systems that have relat... narrow_mappings A list of terms from different schemas or terminology systems that have narro... broad_mappings A list of terms from different schemas or terminology systems that have broad... deprecated_element_has_exact_replacement When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement When an element is deprecated, it can be potentially replaced by this uri or ... annotations a collection of tag/text tuples with the semantics of OWL Annotation extensions a tag/text tuple attached to an arbitrary element extension_tag a tag associated with an extension extension_value the actual annotation","title":"Slots"},{"location":"#enumerations","text":"Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ... RelationalRoleEnum enumeration of roles a slot on a relationship class can play AliasPredicateEnum PresenceEnum enumeration of conditions by which a slot value should be set","title":"Enumerations"},{"location":"#types","text":"Type Description String A character string Integer An integer Boolean A binary (true or false) value Float A real number that conforms to the xsd:float specification Double A real number that conforms to the xsd:double specification Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Time A time object represents a (local) time of day, independent of any particular... Date a date (year, month and day) in an idealized calendar Datetime The combination of a date and time DateOrDatetime Either a date or a datetime Uriorcurie a URI or a CURIE Uri a complete URI Ncname Prefix part of CURIE Objectidentifier A URI or CURIE that represents an object in the model Nodeidentifier A URI, CURIE or BNODE that represents a node in a model","title":"Types"},{"location":"#subsets","text":"Subset Description BasicSubset An extension of MinimalSubset that avoids advanced constructs and can be impl... MinimalSubset The absolute minimal set of elements necessary for defining any schema ObjectOrientedProfile A profile that includes all the metamodel elements whose semantics can be exp... OwlProfile A profile that includes all the metamodel elements whose semantics can be exp... RelationalModelProfile A profile that includes all the metamodel elements whose semantics can be exp... SpecificationSubset A subset that includes all the metamodel elements that form part of the norma...","title":"Subsets"},{"location":"00preamble/","text":"Linked Data Modeling Language: Specification Authors: Chris Mungall, Lawrence Berkeley National Laboratory Harold Solbrig, Johns Hopkins University Abstract The Linked Data Modeling Language (LinkML) is a language for working with and specifying the structure of instance data. A LinkML schema (aka model or datamodel) describes the structure of instance data, and specifies valid instances and rules for performing inference over instance data. This document defines the structure of instance data using a functional-style syntax, and defines the structure of a particular class of instance data, a LinkML schema , and the rules for these schemas. Notes More information about LinkML can be found on the LinkML site , which includes introductory material and tutorials . It also includes a reference implementation and set of tools for working with LinkML schemas and data. The specification provided here is intended to be independent of any particular tool or implementation. Status of this specification This is a draft specification open from comments to all. License This specification, like all parts of LinkML are in the public domain under a Creative Commons Zero license waiver.","title":"Linked Data Modeling Language: Specification"},{"location":"00preamble/#linked-data-modeling-language-specification","text":"Authors: Chris Mungall, Lawrence Berkeley National Laboratory Harold Solbrig, Johns Hopkins University","title":"Linked Data Modeling Language: Specification"},{"location":"00preamble/#abstract","text":"The Linked Data Modeling Language (LinkML) is a language for working with and specifying the structure of instance data. A LinkML schema (aka model or datamodel) describes the structure of instance data, and specifies valid instances and rules for performing inference over instance data. This document defines the structure of instance data using a functional-style syntax, and defines the structure of a particular class of instance data, a LinkML schema , and the rules for these schemas.","title":"Abstract"},{"location":"00preamble/#notes","text":"More information about LinkML can be found on the LinkML site , which includes introductory material and tutorials . It also includes a reference implementation and set of tools for working with LinkML schemas and data. The specification provided here is intended to be independent of any particular tool or implementation.","title":"Notes"},{"location":"00preamble/#status-of-this-specification","text":"This is a draft specification open from comments to all.","title":"Status of this specification"},{"location":"00preamble/#license","text":"This specification, like all parts of LinkML are in the public domain under a Creative Commons Zero license waiver.","title":"License"},{"location":"01introduction/","text":"Introduction This document is a functional draft specification for the Linked Data Modeling Language (LinkML). LinkML is a data modeling language for describing the structure of a collection of instances , where instances are tree-like object-oriented structures. Instances are pieces of information that represent things of interest in a particular domain, such as individual people, biological samples, places, events, or abstract entities. Instances are either primitive types such as numbers or strings, or objects that are typed using classes from a LinkML schema . Classes are categories or groupings of things in the domain of interest; for example, \"Person\", \"Medical History\", \"Data file\", or \"Country\". Instances can be inter-related by assigning slot values ; for example, an instance of a Person may have values for slots \"name\" or \"country of birth\". LinkML schemas also specify rules for determining if instances conform to the schema, and for inference adding additional implicit slot values. LinkML is independent of any programming language, database technology, and is independent of any concrete form for serializing instances of schemas. Mappings are provided for serializing instances as JSON, YAML, RDF, flat tables, or relational models, or for mapping to programming language structures. However, the structure and semantics of LinkML are independent from any of these. Schemas are typically expressed using the YAML serialization, but this specification is defined independent of that particular serialization. LinkML is self-describing, and any LinkML schema is itself a collection instances that instantiates elements in a special schema called the LinkML metamodel . Audience This document is intended for LinkML tool and framework implementors, and is intended to provide formal clarity about the structure and semantics of LinkML. For a more lightweight introduction, consult the material on the main LinkML site , including the LinkML tutorial. Conventions and terminology The key words \"MUST\", \"MUST NOT\", \"REQUIRED\", \"SHALL\", \"SHALL NOT\", \"SHOULD\", \"SHOULD NOT\", \"RECOMMENDED\", \"MAY\", and \"OPTIONAL\" in this document are to be interpreted as described in RFC 2119 . BNF Grammars in this document are written using the BNF notation, summarized below: Construct Syntax terminal symbols enclosed in single quotes a set of terminal symbols described in English italic nonterminal symbols boldface zero or more curly braces zero or one square brackets alternative vertical bar We also include a meta-production rule for expressing comma-delimited lists <NT>List ::= [ <NT> { ',' <NT>List } ] Outline The specification is organized in 6 parts. The parts cannot be read independently, as each part builds on concepts introduced in previous parts. Part 1: Introduction This section. Provides background information and preliminary definitions Part 2: Structure and Syntax of Instances Specification of the data model for instances in LinkML. The data model shown as UML for informative purposes. A normative functional-style syntax is provided for instances, and this syntax is used throughout the specification. This section also introduces a path accessor syntax for specifying how to traverse LinkML instances. Part 3: Structure of Schemas Specification of the core elements of a LinkML schema: ClassDefinitions, TypeDefinitions, SlotDefinitions, EnumDefinitions, as well as ancillary structures. Part 4: Derived Schemas and Schema Semantics Specification of inference procedures for derived schemas , which can be used for purposes such as validation. Part 5: Validation of Instance Data Specification of the procedure for validating LinkML instances using a derived schema Part 6: Mapping of Instance Data Specification of how LinkML instances are mapped to other data models and syntaxes: JSON/YAML RDF and JSON-LD","title":"Introduction"},{"location":"01introduction/#introduction","text":"This document is a functional draft specification for the Linked Data Modeling Language (LinkML). LinkML is a data modeling language for describing the structure of a collection of instances , where instances are tree-like object-oriented structures. Instances are pieces of information that represent things of interest in a particular domain, such as individual people, biological samples, places, events, or abstract entities. Instances are either primitive types such as numbers or strings, or objects that are typed using classes from a LinkML schema . Classes are categories or groupings of things in the domain of interest; for example, \"Person\", \"Medical History\", \"Data file\", or \"Country\". Instances can be inter-related by assigning slot values ; for example, an instance of a Person may have values for slots \"name\" or \"country of birth\". LinkML schemas also specify rules for determining if instances conform to the schema, and for inference adding additional implicit slot values. LinkML is independent of any programming language, database technology, and is independent of any concrete form for serializing instances of schemas. Mappings are provided for serializing instances as JSON, YAML, RDF, flat tables, or relational models, or for mapping to programming language structures. However, the structure and semantics of LinkML are independent from any of these. Schemas are typically expressed using the YAML serialization, but this specification is defined independent of that particular serialization. LinkML is self-describing, and any LinkML schema is itself a collection instances that instantiates elements in a special schema called the LinkML metamodel .","title":"Introduction"},{"location":"01introduction/#audience","text":"This document is intended for LinkML tool and framework implementors, and is intended to provide formal clarity about the structure and semantics of LinkML. For a more lightweight introduction, consult the material on the main LinkML site , including the LinkML tutorial.","title":"Audience"},{"location":"01introduction/#conventions-and-terminology","text":"The key words \"MUST\", \"MUST NOT\", \"REQUIRED\", \"SHALL\", \"SHALL NOT\", \"SHOULD\", \"SHOULD NOT\", \"RECOMMENDED\", \"MAY\", and \"OPTIONAL\" in this document are to be interpreted as described in RFC 2119 .","title":"Conventions and terminology"},{"location":"01introduction/#bnf","text":"Grammars in this document are written using the BNF notation, summarized below: Construct Syntax terminal symbols enclosed in single quotes a set of terminal symbols described in English italic nonterminal symbols boldface zero or more curly braces zero or one square brackets alternative vertical bar We also include a meta-production rule for expressing comma-delimited lists <NT>List ::= [ <NT> { ',' <NT>List } ]","title":"BNF"},{"location":"01introduction/#outline","text":"The specification is organized in 6 parts. The parts cannot be read independently, as each part builds on concepts introduced in previous parts.","title":"Outline"},{"location":"01introduction/#part-1-introduction","text":"This section. Provides background information and preliminary definitions","title":"Part 1: Introduction"},{"location":"01introduction/#part-2-structure-and-syntax-of-instances","text":"Specification of the data model for instances in LinkML. The data model shown as UML for informative purposes. A normative functional-style syntax is provided for instances, and this syntax is used throughout the specification. This section also introduces a path accessor syntax for specifying how to traverse LinkML instances.","title":"Part 2: Structure and Syntax of Instances"},{"location":"01introduction/#part-3-structure-of-schemas","text":"Specification of the core elements of a LinkML schema: ClassDefinitions, TypeDefinitions, SlotDefinitions, EnumDefinitions, as well as ancillary structures.","title":"Part 3: Structure of Schemas"},{"location":"01introduction/#part-4-derived-schemas-and-schema-semantics","text":"Specification of inference procedures for derived schemas , which can be used for purposes such as validation.","title":"Part 4: Derived Schemas and Schema Semantics"},{"location":"01introduction/#part-5-validation-of-instance-data","text":"Specification of the procedure for validating LinkML instances using a derived schema","title":"Part 5: Validation of Instance Data"},{"location":"01introduction/#part-6-mapping-of-instance-data","text":"Specification of how LinkML instances are mapped to other data models and syntaxes: JSON/YAML RDF and JSON-LD","title":"Part 6: Mapping of Instance Data"},{"location":"02instances/","text":"LinkML Instances Functional Instance Syntax and Structure This specification provides a grammar for a functional syntax for expressing LinkML instances. This syntax is not intended for data exchange, but instead for unambiguous describing data in LinkML. Section 6 specifies how the instance model is converted to JSON, YAML, and RDF. Instances An instance is either one of four definition types, or a collection, or the special token None : Instance := None | InstanceOfClass | AtomicInstance | CollectionInstance AtomicInstance := InstanceOfType | InstanceOfEnum | InstanceOfReference classDiagram Instance <|-- InstanceOfClass Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum Instance <|-- CollectionInstance Instance <-- None Definition Types and Names Definition names are used to unambiguously indicate definitions specified in a Schema (described in the next section ): ClassDefinitionName := ElementName ClassDefinitionReferenceName := ElementName TypeDefinitionName := ElementName EnumDefinitionName := ElementName SlotDefinitionName := ElementName ElementName := a finite sequence of characters matching the PN_LOCAL production of SPARQL and not matching any of the keyword terminals of the syntax Note that the grammar needs a table mapping names to types in order to unambiguously parse a serialization in functional syntax names must not be shared across definition types Instances of Classes An InstanceOfClass is a pair consisting of (1) a ClassDefinition Name that indicates the instantiation type of the instance, and (2) zero to many Assignments , where each assignment is a key-value pair of a SlotName and an Instance * value. InstanceOfClass := ClassDefinitionName '(' < Assignment >List ')' Assignment := SlotName '=' Instance classDiagram Instance <|-- InstanceOfClass InstanceOfClass \"1\" --> \"1..*\" Assignment Assignment \"1\" --> Instance class InstanceOfClass { +ClassDefinitionName type +Assignment assignments } class Assignment { +SlotDefinitionName slot +Instance value } No SlotName can appear twice in any set of Assignments (i.e. SlotName is a key) An example instance might be written in functional syntax as: Person(id=..., name=..., age=..., <other Assignments>) where this instantiates the class with name \"Person\". Primitive (Atomic) Instances There are 3 types of primitive instances, each is a pair consisting of (1) a Name of the element instantiated (2) an atomic value InstanceOfType := TypeDefinitionName '(' AtomicValue ')' InstanceOfEnum := EnumDefinitionName '(' AtomicValue ')' InstanceOfReference := ClassDefinitionReferenceName '(' AtomicValue ')' classDiagram Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum class Instance { } class AtomicInstance { +AtomicValue value } class InstanceOfReference { +ClassDefinitionName type } class InstanceOfType { +TypeDefinitionName type } class InstanceOfEnum { +EnumDefinitionName type } Atomic Values An atomic value is either a string or number or boolean, where numbers can be floating points, decimals, or integers. AtomicValue := StringValue | NumberValue | BooleanValue StringValue := a finite sequence of characters in which \" (U+22) and \\ (U+5C) occur only in pairs of the form \\\" (U+5C, U+22) and \\ (U+5C, U+5C), enclosed in a pair of \" (U+22) characters NumberValue := FloatingPointValue | DecimalValue | IntegerValue FloatingPointValue ::= [ '+' | '-'] ( Digits ['.' Digits ] [ Exponent ] | '.' Digits [ Exponent ]) ( 'f' | 'F' ) Exponent ::= ('e' | 'E') ['+' | '-'] Digits DecimalValue ::= ['+' | '-'] Digits '.' Digits IntegerValue ::= ['+' | '-'] Digits NonNegativeInteger ::= Zero | PositiveInteger PositiveInteger ::= NonZero { Digit } Digits ::= Digit { Digit } Digit ::= Zero | NonZero NonZero := '1' | '2' | '3' | '4' | '5' | '6' | '7' | '8' | '9' Zero ::= '0' BooleanValue ::= 'True' | 'False' Examples of atomic values are: 180.2 -- a DecimalValue 5 -- an IntegerValue \"Alex\" -- a StringValue Atomic Instance Examples An InstanceOfType instance might look like: Integer(23) For this to be a valid InstanceOfType, \"Integer\" must be the name of a TypeDefinition in the schema Another example: PhoneNumber(\"+1 800 555 0100\") For this to be a valid InstanceOfType, \"PhoneNumber\" must be the name of a TypeDefinition in the schema If the schema includes a ClassReference \"PersonId\" then the following is a valid InstanceOfReference PersonId(\"SSN:456\") This MAY be the same string used to identify an instance of a ClassDefinition Person(id=\"SSN:456\") , but this is not required. Collections A collection is zero or more instances, serialized as a comma-delimited list: CollectionInstance := '[' < Instance >List ']' classDiagram Instance <|-- CollectionInstance CollectionInstance \"*\" --> \"0..*\" Instance Examples of collections: [String(\"A\"), String(\"B\"), Integer(5)] -- a list of primitive instances [Person(name=..., ...), Person(name=..., ...)] -- a list of class instances [Person(name=..., ...), Integer(5), None] -- a heterogeneous collection [] -- an empty collection None (Null) instances A special symbol is included to indicate null or missing values None := 'None' An assignment of a slot to None is equivalent to omitting that assignment. I.e. the following two instance serializations are equivalent: Person(address=None) Person() Combined Example The following is an example of an InstanceOfClass where the instantiated type is a class with name \"Person\": Person( id=String(\"SSN:123\"), name=String(\"Alex\"), aliases=[String(\"Alexandra\")], address=None, phone=PhoneNumber(\"+1 800 555 0100\"), height= Measurement(value=Decimal(170.2) unit=UnitCode(\"cm\")), relationships=[ FamilialRelationship( type=RelationshipType(\"SIBLING_OF\"), related_to=PersonId(\"SSN:456\") ) ] ) Parsing this requires a schema that assigns element names to schema elements: Element Name Schema Type Person ClassDefinition Measurement ClassDefinition FamilialRelationship ClassDefinition UnitCode EnumDefinition Person ClassDefinition Identity conditions For two instances i and j to be identical they must be of the same metatype. Identity conditions for two primitive instances are satisfied if both DefinitionName and AtomicValue match i=<DefinitionName_i>(<AtomicValue_i>) j=<DefinitionName_j>(<AtomicValue_j>) i=j iff DefinitionName_i = DefinitionName_j and AtomicValue_i=AtomicValue_j None is identical to itself Two collections are identical if they are of the same length and each member of i is identical to at least one member of j , where each match must be unique Two ClassDefinition instances are identical if the instantiated ClassDefinitionName is identical and each non- None assignment in i is identical an assignment in j and, and each non-None assignment in j is identical to an assignment in i Two assignments are identical if the slot name is the same, and the value is identical Instance Serializations The abstract syntax provided here is intended as a normative syntax for the purposes of specifying the semantics of LinkML. See section 6 for details on how this functional syntax maps to other serialization syntaxes and models such as JSON and RDF. Instance Accessor Syntax For a given instance i , accessor syntax can be used to dereference values. Path := SlotDefinitionName { PathExtension } PathExtension := '.' SlotDefinitionName | '[' Identifier ']' To interpret an accessor for a given instance i : if the path extension is .<s> then i must be an * InstanceOfClass , and the value is equal to the value of the slot assignment for slot s if the path extension is [<id>] then i must be an InstanceOfCollection , and the value is equals to the member of that list that has a slot with the role of identifier whose value is <id> For example, if i is equal to the Person instance in the example above: i.id == String(\"SSN:123\") i.height.unit == String(\"cm\")","title":"LinkML Instances"},{"location":"02instances/#linkml-instances","text":"","title":"LinkML Instances"},{"location":"02instances/#functional-instance-syntax-and-structure","text":"This specification provides a grammar for a functional syntax for expressing LinkML instances. This syntax is not intended for data exchange, but instead for unambiguous describing data in LinkML. Section 6 specifies how the instance model is converted to JSON, YAML, and RDF.","title":"Functional Instance Syntax and Structure"},{"location":"02instances/#instances","text":"An instance is either one of four definition types, or a collection, or the special token None : Instance := None | InstanceOfClass | AtomicInstance | CollectionInstance AtomicInstance := InstanceOfType | InstanceOfEnum | InstanceOfReference classDiagram Instance <|-- InstanceOfClass Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum Instance <|-- CollectionInstance Instance <-- None","title":"Instances"},{"location":"02instances/#definition-types-and-names","text":"Definition names are used to unambiguously indicate definitions specified in a Schema (described in the next section ): ClassDefinitionName := ElementName ClassDefinitionReferenceName := ElementName TypeDefinitionName := ElementName EnumDefinitionName := ElementName SlotDefinitionName := ElementName ElementName := a finite sequence of characters matching the PN_LOCAL production of SPARQL and not matching any of the keyword terminals of the syntax Note that the grammar needs a table mapping names to types in order to unambiguously parse a serialization in functional syntax names must not be shared across definition types","title":"Definition Types and Names"},{"location":"02instances/#instances-of-classes","text":"An InstanceOfClass is a pair consisting of (1) a ClassDefinition Name that indicates the instantiation type of the instance, and (2) zero to many Assignments , where each assignment is a key-value pair of a SlotName and an Instance * value. InstanceOfClass := ClassDefinitionName '(' < Assignment >List ')' Assignment := SlotName '=' Instance classDiagram Instance <|-- InstanceOfClass InstanceOfClass \"1\" --> \"1..*\" Assignment Assignment \"1\" --> Instance class InstanceOfClass { +ClassDefinitionName type +Assignment assignments } class Assignment { +SlotDefinitionName slot +Instance value } No SlotName can appear twice in any set of Assignments (i.e. SlotName is a key) An example instance might be written in functional syntax as: Person(id=..., name=..., age=..., <other Assignments>) where this instantiates the class with name \"Person\".","title":"Instances of Classes"},{"location":"02instances/#primitive-atomic-instances","text":"There are 3 types of primitive instances, each is a pair consisting of (1) a Name of the element instantiated (2) an atomic value InstanceOfType := TypeDefinitionName '(' AtomicValue ')' InstanceOfEnum := EnumDefinitionName '(' AtomicValue ')' InstanceOfReference := ClassDefinitionReferenceName '(' AtomicValue ')' classDiagram Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum class Instance { } class AtomicInstance { +AtomicValue value } class InstanceOfReference { +ClassDefinitionName type } class InstanceOfType { +TypeDefinitionName type } class InstanceOfEnum { +EnumDefinitionName type }","title":"Primitive (Atomic) Instances"},{"location":"02instances/#atomic-values","text":"An atomic value is either a string or number or boolean, where numbers can be floating points, decimals, or integers. AtomicValue := StringValue | NumberValue | BooleanValue StringValue := a finite sequence of characters in which \" (U+22) and \\ (U+5C) occur only in pairs of the form \\\" (U+5C, U+22) and \\ (U+5C, U+5C), enclosed in a pair of \" (U+22) characters NumberValue := FloatingPointValue | DecimalValue | IntegerValue FloatingPointValue ::= [ '+' | '-'] ( Digits ['.' Digits ] [ Exponent ] | '.' Digits [ Exponent ]) ( 'f' | 'F' ) Exponent ::= ('e' | 'E') ['+' | '-'] Digits DecimalValue ::= ['+' | '-'] Digits '.' Digits IntegerValue ::= ['+' | '-'] Digits NonNegativeInteger ::= Zero | PositiveInteger PositiveInteger ::= NonZero { Digit } Digits ::= Digit { Digit } Digit ::= Zero | NonZero NonZero := '1' | '2' | '3' | '4' | '5' | '6' | '7' | '8' | '9' Zero ::= '0' BooleanValue ::= 'True' | 'False' Examples of atomic values are: 180.2 -- a DecimalValue 5 -- an IntegerValue \"Alex\" -- a StringValue","title":"Atomic Values"},{"location":"02instances/#atomic-instance-examples","text":"An InstanceOfType instance might look like: Integer(23) For this to be a valid InstanceOfType, \"Integer\" must be the name of a TypeDefinition in the schema Another example: PhoneNumber(\"+1 800 555 0100\") For this to be a valid InstanceOfType, \"PhoneNumber\" must be the name of a TypeDefinition in the schema If the schema includes a ClassReference \"PersonId\" then the following is a valid InstanceOfReference PersonId(\"SSN:456\") This MAY be the same string used to identify an instance of a ClassDefinition Person(id=\"SSN:456\") , but this is not required.","title":"Atomic Instance Examples"},{"location":"02instances/#collections","text":"A collection is zero or more instances, serialized as a comma-delimited list: CollectionInstance := '[' < Instance >List ']' classDiagram Instance <|-- CollectionInstance CollectionInstance \"*\" --> \"0..*\" Instance Examples of collections: [String(\"A\"), String(\"B\"), Integer(5)] -- a list of primitive instances [Person(name=..., ...), Person(name=..., ...)] -- a list of class instances [Person(name=..., ...), Integer(5), None] -- a heterogeneous collection [] -- an empty collection","title":"Collections"},{"location":"02instances/#none-null-instances","text":"A special symbol is included to indicate null or missing values None := 'None' An assignment of a slot to None is equivalent to omitting that assignment. I.e. the following two instance serializations are equivalent: Person(address=None) Person()","title":"None (Null) instances"},{"location":"02instances/#combined-example","text":"The following is an example of an InstanceOfClass where the instantiated type is a class with name \"Person\": Person( id=String(\"SSN:123\"), name=String(\"Alex\"), aliases=[String(\"Alexandra\")], address=None, phone=PhoneNumber(\"+1 800 555 0100\"), height= Measurement(value=Decimal(170.2) unit=UnitCode(\"cm\")), relationships=[ FamilialRelationship( type=RelationshipType(\"SIBLING_OF\"), related_to=PersonId(\"SSN:456\") ) ] ) Parsing this requires a schema that assigns element names to schema elements: Element Name Schema Type Person ClassDefinition Measurement ClassDefinition FamilialRelationship ClassDefinition UnitCode EnumDefinition Person ClassDefinition","title":"Combined Example"},{"location":"02instances/#identity-conditions","text":"For two instances i and j to be identical they must be of the same metatype. Identity conditions for two primitive instances are satisfied if both DefinitionName and AtomicValue match i=<DefinitionName_i>(<AtomicValue_i>) j=<DefinitionName_j>(<AtomicValue_j>) i=j iff DefinitionName_i = DefinitionName_j and AtomicValue_i=AtomicValue_j None is identical to itself Two collections are identical if they are of the same length and each member of i is identical to at least one member of j , where each match must be unique Two ClassDefinition instances are identical if the instantiated ClassDefinitionName is identical and each non- None assignment in i is identical an assignment in j and, and each non-None assignment in j is identical to an assignment in i Two assignments are identical if the slot name is the same, and the value is identical","title":"Identity conditions"},{"location":"02instances/#instance-serializations","text":"The abstract syntax provided here is intended as a normative syntax for the purposes of specifying the semantics of LinkML. See section 6 for details on how this functional syntax maps to other serialization syntaxes and models such as JSON and RDF.","title":"Instance Serializations"},{"location":"02instances/#instance-accessor-syntax","text":"For a given instance i , accessor syntax can be used to dereference values. Path := SlotDefinitionName { PathExtension } PathExtension := '.' SlotDefinitionName | '[' Identifier ']' To interpret an accessor for a given instance i : if the path extension is .<s> then i must be an * InstanceOfClass , and the value is equal to the value of the slot assignment for slot s if the path extension is [<id>] then i must be an InstanceOfCollection , and the value is equals to the member of that list that has a slot with the role of identifier whose value is <id> For example, if i is equal to the Person instance in the example above: i.id == String(\"SSN:123\") i.height.unit == String(\"cm\")","title":"Instance Accessor Syntax"},{"location":"03schemas/","text":"Schema Datamodel This section describes the structure of a LinkML schema. For precise interpretation of these structures, refer to the following two sections on derived schemas and validation Schema Basics A LinkML schema specifies rules and structural conformance conditions for instances . Schemas allow for: parsing of instance serializations to LinkML instance structures structurally and semantically validating LinkML instance structures inference of missing values in LinkML instance structures Every LinkML schema m is itself an instance of a special class SchemaDefinition that forms part of a special schema called the LinkML metamodel , which is denoted as m M . There is exactly one metamodel. In this specification: ClassDefinitions in m M are called metaclasses SlotDefinitions in m M are called metaslots The metamodel is itself expressed in LinkML, and the latest version can found from canonical URLs: https://w3id.org/linkml/SchemaDefinition -- generated documentation https://w3id.org/linkml/meta.yaml -- canonical YAML serialization This specification specifies the normative elements necessary to specify the behavior of LinkML schemas. Schemas may have additional elements provided in the metamodel. For example, elements in schemas can have informative slot assignments for slots such as title , description , and so on, but these slots are not described in this specification as they are not normative and do not affect the formal interpretation of schemas. YAML representation of schemas Because schemas and all the parts of a schema are instances of metaclasses in the metamodel, the YAML serialization rules from section 6 can be applied to both serialized and deserialized a schema as YAML. Analogies to other modeling frameworks To help understand the basic concepts, it can be helpful to think about analogous structures in other frameworks. However, it should be understood these are not equivalents. ClassDefinitions are analogous to: classes in object-oriented languages tables in relational databases and spreadsheets owl:Class entities in RDFS/OWL SlotDefinitions are analogous to: attributes in object-oriented languages columns or fields in relational databases and spreadsheets properties in JSON-Schema rdf:Property entities in RDFS/OWL EnumDefinitions are analogous to: enumerated types in programming languages and some relational systems drop-down selections in spreadsheets Note however that in LinkML enums are optionally backed by stronger semantics with enum elements (permissible values) mapped to vocabularies or ontologies EnumDefinitions are analogous to: data types in most object-oriented languages primitive types in database systems extensible types in some systems rdf:Literals in RDF Datatypes in OWL SchemaDefinition Metaclass metamodel documentation: SchemaDefinition SchemaDefinition: Normative subset metaslots A schema m is an instance of a SchemaDefinition, with normative elements: Name Cardinality and Range Description id 1..1 xsd:anyURI The official schema URI name 1..1 xsd:string a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 xsd:string default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* xsd:anyURI other schemas that are included in this schema rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element SchemaDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram SchemaDefinition \"1\" --> \"*\" ClassDefinition: classes SchemaDefinition \"1\" --> \"*\" SlotDefinition: slots SchemaDefinition \"1\" --> \"*\" EnumDefinition: enums SchemaDefinition \"1\" --> \"*\" EnumDefinition: Enums SchemaDefinition \"1\" --> \"*\" SubsetDefinition: subsets SchemaDefinition \"1\" --> \"*\" Prefix: prefixes ClassDefinition --|> Element SlotDefinition --|> Element EnumDefinition --|> Element EnumDefinition --|> Element class SchemaDefinition { +Uri id +NcName name +UriOrCurie[] imports +Ncname default_prefix +Uri default_range } Schema example, functional syntax The skeleton of a schema instance serialized as in functional syntax might look like: SchemaDefinition( id=String('http://example.org/organization'), imports=[...], prefixes=[...], classes=[...], slots=[...], enums=[...], types=[...], ) Schema example, YAML The skeleton of the above schema instance serialized as YAML might look like: id: http://example.org/personinfo imports: ... prefixes: ... classes: ... slots: ... enums: ... types: ... ClassDefinition Metaclass metamodel documentation: ClassDefinition Instances of ClassDefinition are themselves instantiable . For example, a schema may contain a class definition \"Person\". This class definition instantiates the metaclass ClassDefinition , and can have instances, of actual persons. Any LinkML instance that instantiates a ClassDefinition will have zero to many slot-value assignments, constrained by rules that operate off of the metaslot assignments of that class. ClassDefinition: Normative subset metaslots Any instance c of a ClassDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier class_uri 0..1 xsd:anyURI URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 xsd:boolean indicator that this is the root class in tree structures rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element ClassDefinition: UML A subset of the above normative slots are depicted as follows: classDiagram ClassExpression \"1\" --> \"*\" AnonymousClassExpression: any_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: exactly_one_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: none_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: all_of ClassDefinition --|> ClassExpression: mixin ClassDefinition --|> Element: is_a AnonymousClassExpression --|> ClassExpression class ClassDefinition { +ClassDefinitionName name +boolean abstract +boolean mixin } ClassDefinition \"*\" --> \"*\" SlotDefinition: slots ClassDefinition \"1\" --> \"*\" SlotDefinition: slot_usage ClassDefinition \"1\" --> \"*\" SlotDefinition: attributes ClassDefinition \"*\"--> \"0..1\" ClassDefinition: is_a ClassDefinition \"1\" --> \"*\" ClassDefinition: mixins ClassDefinition \"1\" --> \"*\" AnonymousClassExpression: classification_rules ClassDefinition \"1\" --> \"*\" ClassRule: rules ClassExpressions and anonymous ClassExpressions Note this metaclass exemplifies a pattern that is reused by TypeDefinition, SlotDefinition and EnumDefinition metaclasses, below. For the core definition types <D> , there are a triad of 3 metaclasses in the metamodel: <D>Expression Anonymous<D>Expression <D>Definition depicted as: classDiagram D_Expression \"*\" --> AnonymousD_Expression: <boolean combinator> class D_Definition { +D_Name name } D_Definition --|> D_Expression AnonymousT_Expression --|> D_Expression For many purposes, all that is required is the Definition element. The purpose of the above abstraction is to allow composition of anonymous expressions using boolean operators. For example, we may want to refer to the union of collection of ClassDefinitions. Class Definition Example, Functional Syntax A collection of ClassDefinition instances might look [ ClassDefinition( name=String(\"NamedThing\"), abstract=True, slots=[ String(\"id\"), String(\"name\"), ... ] ), ClassDefinition( name=String(\"Person\"), description=String(\"A person, living or dead\"), is_a=String(\"NamedThing\"), attributes=[ SlotDefinition( name=String(\"height\"), ...), SlotDefinition( name=String(\"age\"), ...) ), ... ], Class Definition Example, YAML The above example following the YAML serialization is: NamedThing: abstract: true slots: - id - name Person: description: A person, living or dead is_a: NamedThing attributes: height: ... age: ... SlotDefinition Metaclass metamodel documentation: SlotDefinition Instances of SlotDefinition are not themselves instantiable . Each assignment in a LinkML ClassDefinition instance must use a SlotDefinition from the schema. SlotDefinition: Normative subset metaslots SlotDefinition inherits from both Element and SlotExpression. A SlotDefinition must have a name . other schema elements may refer to AnonymousSlotExpression s composed using boolean operators. Any instance s of a SlotDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier slot_uri 0..1 xsd:anyURI predicate of this slot for semantic web application identifier 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container alias 0..1 xsd:string the name used for a slot in the context of its owning class multivalued 0..1 xsd:boolean true means that slot can have more than one value required 0..1 xsd:boolean true means that the slot must be present in the loaded definition recommended 0..1 xsd:boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 xsd:boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 xsd:boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 xsd:boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 xsd:string function that provides a default value for the slot list_elements_unique 0..1 xsd:boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 xsd:boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 xsd:boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 xsd:boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 xsd:boolean If s is symmetric, and i reflexive 0..1 xsd:boolean If s is reflexive, then i locally_reflexive 0..1 xsd:boolean If s is locally_reflexive, then i irreflexive 0..1 xsd:boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 xsd:boolean If s is antisymmetric, and i transitive 0..1 xsd:boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 xsd:boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 xsd:string the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 xsd:integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 xsd:integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the values of the slot is multivalued with at least one member satisfying the... all_members 0..* SlotDefinition the value of the multiavlued slot is a list where all elements conform to the... abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element SlotDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram class SlotExpression { +SlotDefinitionName range } SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: any_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: exactly_one_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: none_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: all_of class SlotDefinition { +SlotDefinitionName name +boolean identifier +boolean key +boolean abstract +boolean mixin +boolean designates_type +SlotDefinitionName is_a +SlotDefinitionName[] mixins +ClassDefinitionName range +Decimal minimum_value +Decimal maximum_value +String equals_expression +String pattern +String string_serialization +boolean symmetric +boolean asymmetric +boolean reflexive +boolean irreflexive +boolean locally_reflexive +boolean transitive +SlotDefinition transitive_form_of +SlotDefinition reflexive_transitive_form_of +SlotDefinition inverse } SlotDefinition --|> SlotExpression: mixin SlotDefinition --|> Element: is_a SlotDefinition \"0..1\" --> SlotDefinition: is_a SlotDefinition \"*\" --> SlotDefinition: mixins Slot Definition Example, Functional Syntax An example collection of SlotDefinitions might be: SchemaDefinition( slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"A unique identifier for an object\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... ) EnumDefinition Metaclass metamodel documentation: EnumDefinition Instances of EnumDefinition instances are instantiable . For example, a schema may have an enumeration with name \"JobCode\". This is an instance of an EnumDefinition, and can also be instantiated by different permissible values such as \"Forklift Driver\" EnumDefinition: Normative subset metaslots Any instance e of a EnumDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 xsd:anyURI URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 xsd:anyURI the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element EnumDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram class EnumExpression { +TypeDefinitionName range } EnumExpression \"*\" --> AnonymousEnumExpression: any_of EnumExpression \"*\" --> AnonymousEnumExpression: exactly_one_of EnumExpression \"*\" --> AnonymousEnumExpression: none_of EnumExpression \"*\" --> AnonymousEnumExpression: all_of class EnumDefinition { +EnumDefinitionName name } EnumDefinition \"*\" --> PermissibleValue: permissible_values class PermissibleValue { +String text +String description +UriOrCurie meaning } TypeDefinition Metaclass metamodel documentation: TypeDefinition Instances of TypeDefinition are themselves instantiable . For example, a schema might contain a TypeDefinition with name \"PhoneNumber\". This is an instance of TypeDefinition, and can itself be instantiated by individual phone numbers. TypeDefinition: Normative subset metaslots Any instance t of a TypeDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier type_uri 0..1 xsd:anyURI The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 xsd:string python base type that implements this type definition repr 0..1 xsd:string the name of the python object that implements this type definition pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element TypeDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram class TypeExpression { +TypeDefinitionName range } TypeExpression \"*\" --> AnonymousTypeExpression: any_of TypeExpression \"*\" --> AnonymousTypeExpression: exactly_one_of TypeExpression \"*\" --> AnonymousTypeExpression: none_of TypeExpression \"*\" --> AnonymousTypeExpression: all_of AnonymousTypeExpression --|> TypeExpression TypeDefinition --|> TypeExpression class TypeDefinition { +TypeDefinitionName name +TypeDefinitionName typeof +TypeDefinitionName[] mixins +Uri uri +String base +String repr } TypeDefinition --|> TypeExpression: mixin TypeDefinition --|> Element: is_a Default Types LinkML includes a default schema of types Schema: https://w3id.org/linkml/types.yaml . Documentation: https://linkml.io/linkml-model/docs/#types These are: Boolean (Bool) - A binary (true or false) value Date (XSDDate) - a date (year, month and day) in an idealized calendar Datetime (XSDDateTime) - The combination of a date and time Decimal (Decimal) - A real number with arbitrary precision that conforms to the xsd:decimal specification Double (float) - A real number that conforms to the xsd:double specification Float (float) - A real number that conforms to the xsd:float specification Integer (int) - An integer Ncname (NCName) - Prefix part of CURIE Nodeidentifier (NodeIdentifier) - A URI, CURIE or BNODE that represents a node in a model. Objectidentifier (ElementIdentifier) - A URI or CURIE that represents an object in the model. String (str) - A character string Time (XSDTime) - A time object represents a (local) time of day, independent of any particular day Uri (URI) - a complete URI Uriorcurie (URIorCURIE) - a URI or a CURIE The type schema can be imported, used directly, or used as a basis to extend new types ClassDefinitionReference Metaclass ClassDefinitionReferences are primitive elements that provide a way to reference a particular instances. ClassDefinitionReferences are not part of the asserted schema but are derived from derivation rules -- see next section Prefix Metaclass metamodel documentation: Prefix A schema can contain any number of prefixes. Each prefix maps a short name such as \"owl\" to a URI. These are used to determine the canonical URI for any element. Prefix: Normative subset metaslots Name Cardinality and Range Description prefix_prefix 0..1 xsd:string the nsname (sans ':' for a given prefix) prefix_reference 1..1 xsd:anyURI A URI associated with a given prefix Prefix: Normative subset UML classDiagram SchemaDefinition \"*\" --> \"*\" Prefix: prefixes class Prefix { +Ncname prefix_prefix +Uri prefix_reference } Prefix Example, Functional Syntax SchemaDefinition( prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ]) Prefix Example, YAML prefixes: linkml: https://w3id.org/linkml/ schema: http://schema.org/ wgs: http://www.w3.org/2003/01/geo/wgs84_pos# qudt: http://qudt.org/1.1/schema/qudt# Complete Schema Example (Informative) For example, consider a schema that models representations of individual people and organizations they belong to may include a class definition Person , and slot definitions for name , address , relationships and so on. This might be depicted in UML as: classDiagram Person \"0\" --> \"*\" Person: knows class Person { +String id +String name +Float height +Date date_of_birth +JobCode occupation } This would have a YAML serialization (see section 6): classes: Person: description: ... slots: - id - name - height - date_of_birth - occupation - knows slots: id: identifier: true range: string name: range: string date_of_birth: range: date height: range: float occupation: range: JobCode knows: range: Person multivalued: true enums: JobCode: permissible_values: ForkliftDriver: ...: types: date: ... Because schemas, are instances of the metamodel, this hypothetical schema may be serialized in functional instance syntax as follows: SchemaDefinition( id=String(\"http://example.org/organization\"), name=String(\"organization\"), prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"org\") prefix_reference=Uri(\"http://example.org/organization/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ], default_prefix=String(\"org\"), imports=[ Uriorcurie(\"linkml:types\") ], classes=[ ClassDefinition( name=String(\"Person\"), slots=[ String(\"id\"), String(\"name\"), String(\"height\"), String(\"age\"), String(\"knows\"), String(\"job\"), ... ] ), ClassDefinition( name=String(\"Organization\"), slots=[ String(\"id\"), ... ] ), ... ], slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"occupation\"), description=String(\"...\"), range=String(\"JobCode\"), ... ), SlotDefinition( name=String(\"date_of_birth\"), description=String(\"...\"), range=String(\"Date\"), ... ), SlotDefinition( name=String(\"knows\"), description=String(\"...\"), range=String(\"Person\"), multivalued=Boolean(True), ... ) ], enums=[ EnumDefinition( name=String(\"JobCode\"), permissible_values=[...], ) ], types=[ TypeDefinition( name=String(\"Date\"), ... ), TypeDefinition( name=String(\"String\"), ... ), ] )","title":"Schema Datamodel"},{"location":"03schemas/#schema-datamodel","text":"This section describes the structure of a LinkML schema. For precise interpretation of these structures, refer to the following two sections on derived schemas and validation","title":"Schema Datamodel"},{"location":"03schemas/#schema-basics","text":"A LinkML schema specifies rules and structural conformance conditions for instances . Schemas allow for: parsing of instance serializations to LinkML instance structures structurally and semantically validating LinkML instance structures inference of missing values in LinkML instance structures Every LinkML schema m is itself an instance of a special class SchemaDefinition that forms part of a special schema called the LinkML metamodel , which is denoted as m M . There is exactly one metamodel. In this specification: ClassDefinitions in m M are called metaclasses SlotDefinitions in m M are called metaslots The metamodel is itself expressed in LinkML, and the latest version can found from canonical URLs: https://w3id.org/linkml/SchemaDefinition -- generated documentation https://w3id.org/linkml/meta.yaml -- canonical YAML serialization This specification specifies the normative elements necessary to specify the behavior of LinkML schemas. Schemas may have additional elements provided in the metamodel. For example, elements in schemas can have informative slot assignments for slots such as title , description , and so on, but these slots are not described in this specification as they are not normative and do not affect the formal interpretation of schemas.","title":"Schema Basics"},{"location":"03schemas/#yaml-representation-of-schemas","text":"Because schemas and all the parts of a schema are instances of metaclasses in the metamodel, the YAML serialization rules from section 6 can be applied to both serialized and deserialized a schema as YAML.","title":"YAML representation of schemas"},{"location":"03schemas/#analogies-to-other-modeling-frameworks","text":"To help understand the basic concepts, it can be helpful to think about analogous structures in other frameworks. However, it should be understood these are not equivalents. ClassDefinitions are analogous to: classes in object-oriented languages tables in relational databases and spreadsheets owl:Class entities in RDFS/OWL SlotDefinitions are analogous to: attributes in object-oriented languages columns or fields in relational databases and spreadsheets properties in JSON-Schema rdf:Property entities in RDFS/OWL EnumDefinitions are analogous to: enumerated types in programming languages and some relational systems drop-down selections in spreadsheets Note however that in LinkML enums are optionally backed by stronger semantics with enum elements (permissible values) mapped to vocabularies or ontologies EnumDefinitions are analogous to: data types in most object-oriented languages primitive types in database systems extensible types in some systems rdf:Literals in RDF Datatypes in OWL","title":"Analogies to other modeling frameworks"},{"location":"03schemas/#schemadefinition-metaclass","text":"metamodel documentation: SchemaDefinition","title":"SchemaDefinition Metaclass"},{"location":"03schemas/#schemadefinition-normative-subset-metaslots","text":"A schema m is an instance of a SchemaDefinition, with normative elements: Name Cardinality and Range Description id 1..1 xsd:anyURI The official schema URI name 1..1 xsd:string a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 xsd:string default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* xsd:anyURI other schemas that are included in this schema rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"SchemaDefinition: Normative subset metaslots"},{"location":"03schemas/#schemadefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram SchemaDefinition \"1\" --> \"*\" ClassDefinition: classes SchemaDefinition \"1\" --> \"*\" SlotDefinition: slots SchemaDefinition \"1\" --> \"*\" EnumDefinition: enums SchemaDefinition \"1\" --> \"*\" EnumDefinition: Enums SchemaDefinition \"1\" --> \"*\" SubsetDefinition: subsets SchemaDefinition \"1\" --> \"*\" Prefix: prefixes ClassDefinition --|> Element SlotDefinition --|> Element EnumDefinition --|> Element EnumDefinition --|> Element class SchemaDefinition { +Uri id +NcName name +UriOrCurie[] imports +Ncname default_prefix +Uri default_range }","title":"SchemaDefinition: Normative subset UML"},{"location":"03schemas/#schema-example-functional-syntax","text":"The skeleton of a schema instance serialized as in functional syntax might look like: SchemaDefinition( id=String('http://example.org/organization'), imports=[...], prefixes=[...], classes=[...], slots=[...], enums=[...], types=[...], )","title":"Schema example, functional syntax"},{"location":"03schemas/#schema-example-yaml","text":"The skeleton of the above schema instance serialized as YAML might look like: id: http://example.org/personinfo imports: ... prefixes: ... classes: ... slots: ... enums: ... types: ...","title":"Schema example, YAML"},{"location":"03schemas/#classdefinition-metaclass","text":"metamodel documentation: ClassDefinition Instances of ClassDefinition are themselves instantiable . For example, a schema may contain a class definition \"Person\". This class definition instantiates the metaclass ClassDefinition , and can have instances, of actual persons. Any LinkML instance that instantiates a ClassDefinition will have zero to many slot-value assignments, constrained by rules that operate off of the metaslot assignments of that class.","title":"ClassDefinition Metaclass"},{"location":"03schemas/#classdefinition-normative-subset-metaslots","text":"Any instance c of a ClassDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier class_uri 0..1 xsd:anyURI URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 xsd:boolean indicator that this is the root class in tree structures rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"ClassDefinition: Normative subset metaslots"},{"location":"03schemas/#classdefinition-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram ClassExpression \"1\" --> \"*\" AnonymousClassExpression: any_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: exactly_one_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: none_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: all_of ClassDefinition --|> ClassExpression: mixin ClassDefinition --|> Element: is_a AnonymousClassExpression --|> ClassExpression class ClassDefinition { +ClassDefinitionName name +boolean abstract +boolean mixin } ClassDefinition \"*\" --> \"*\" SlotDefinition: slots ClassDefinition \"1\" --> \"*\" SlotDefinition: slot_usage ClassDefinition \"1\" --> \"*\" SlotDefinition: attributes ClassDefinition \"*\"--> \"0..1\" ClassDefinition: is_a ClassDefinition \"1\" --> \"*\" ClassDefinition: mixins ClassDefinition \"1\" --> \"*\" AnonymousClassExpression: classification_rules ClassDefinition \"1\" --> \"*\" ClassRule: rules","title":"ClassDefinition: UML"},{"location":"03schemas/#classexpressions-and-anonymous-classexpressions","text":"Note this metaclass exemplifies a pattern that is reused by TypeDefinition, SlotDefinition and EnumDefinition metaclasses, below. For the core definition types <D> , there are a triad of 3 metaclasses in the metamodel: <D>Expression Anonymous<D>Expression <D>Definition depicted as: classDiagram D_Expression \"*\" --> AnonymousD_Expression: <boolean combinator> class D_Definition { +D_Name name } D_Definition --|> D_Expression AnonymousT_Expression --|> D_Expression For many purposes, all that is required is the Definition element. The purpose of the above abstraction is to allow composition of anonymous expressions using boolean operators. For example, we may want to refer to the union of collection of ClassDefinitions.","title":"ClassExpressions and anonymous ClassExpressions"},{"location":"03schemas/#class-definition-example-functional-syntax","text":"A collection of ClassDefinition instances might look [ ClassDefinition( name=String(\"NamedThing\"), abstract=True, slots=[ String(\"id\"), String(\"name\"), ... ] ), ClassDefinition( name=String(\"Person\"), description=String(\"A person, living or dead\"), is_a=String(\"NamedThing\"), attributes=[ SlotDefinition( name=String(\"height\"), ...), SlotDefinition( name=String(\"age\"), ...) ), ... ],","title":"Class Definition Example, Functional Syntax"},{"location":"03schemas/#class-definition-example-yaml","text":"The above example following the YAML serialization is: NamedThing: abstract: true slots: - id - name Person: description: A person, living or dead is_a: NamedThing attributes: height: ... age: ...","title":"Class Definition Example, YAML"},{"location":"03schemas/#slotdefinition-metaclass","text":"metamodel documentation: SlotDefinition Instances of SlotDefinition are not themselves instantiable . Each assignment in a LinkML ClassDefinition instance must use a SlotDefinition from the schema.","title":"SlotDefinition Metaclass"},{"location":"03schemas/#slotdefinition-normative-subset-metaslots","text":"SlotDefinition inherits from both Element and SlotExpression. A SlotDefinition must have a name . other schema elements may refer to AnonymousSlotExpression s composed using boolean operators. Any instance s of a SlotDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier slot_uri 0..1 xsd:anyURI predicate of this slot for semantic web application identifier 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container alias 0..1 xsd:string the name used for a slot in the context of its owning class multivalued 0..1 xsd:boolean true means that slot can have more than one value required 0..1 xsd:boolean true means that the slot must be present in the loaded definition recommended 0..1 xsd:boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 xsd:boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 xsd:boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 xsd:boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 xsd:string function that provides a default value for the slot list_elements_unique 0..1 xsd:boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 xsd:boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 xsd:boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 xsd:boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 xsd:boolean If s is symmetric, and i reflexive 0..1 xsd:boolean If s is reflexive, then i locally_reflexive 0..1 xsd:boolean If s is locally_reflexive, then i irreflexive 0..1 xsd:boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 xsd:boolean If s is antisymmetric, and i transitive 0..1 xsd:boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 xsd:boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 xsd:string the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 xsd:integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 xsd:integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the values of the slot is multivalued with at least one member satisfying the... all_members 0..* SlotDefinition the value of the multiavlued slot is a list where all elements conform to the... abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"SlotDefinition: Normative subset metaslots"},{"location":"03schemas/#slotdefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram class SlotExpression { +SlotDefinitionName range } SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: any_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: exactly_one_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: none_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: all_of class SlotDefinition { +SlotDefinitionName name +boolean identifier +boolean key +boolean abstract +boolean mixin +boolean designates_type +SlotDefinitionName is_a +SlotDefinitionName[] mixins +ClassDefinitionName range +Decimal minimum_value +Decimal maximum_value +String equals_expression +String pattern +String string_serialization +boolean symmetric +boolean asymmetric +boolean reflexive +boolean irreflexive +boolean locally_reflexive +boolean transitive +SlotDefinition transitive_form_of +SlotDefinition reflexive_transitive_form_of +SlotDefinition inverse } SlotDefinition --|> SlotExpression: mixin SlotDefinition --|> Element: is_a SlotDefinition \"0..1\" --> SlotDefinition: is_a SlotDefinition \"*\" --> SlotDefinition: mixins","title":"SlotDefinition: Normative subset UML"},{"location":"03schemas/#slot-definition-example-functional-syntax","text":"An example collection of SlotDefinitions might be: SchemaDefinition( slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"A unique identifier for an object\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... )","title":"Slot Definition Example, Functional Syntax"},{"location":"03schemas/#enumdefinition-metaclass","text":"metamodel documentation: EnumDefinition Instances of EnumDefinition instances are instantiable . For example, a schema may have an enumeration with name \"JobCode\". This is an instance of an EnumDefinition, and can also be instantiated by different permissible values such as \"Forklift Driver\"","title":"EnumDefinition Metaclass"},{"location":"03schemas/#enumdefinition-normative-subset-metaslots","text":"Any instance e of a EnumDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 xsd:anyURI URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 xsd:anyURI the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"EnumDefinition: Normative subset metaslots"},{"location":"03schemas/#enumdefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram class EnumExpression { +TypeDefinitionName range } EnumExpression \"*\" --> AnonymousEnumExpression: any_of EnumExpression \"*\" --> AnonymousEnumExpression: exactly_one_of EnumExpression \"*\" --> AnonymousEnumExpression: none_of EnumExpression \"*\" --> AnonymousEnumExpression: all_of class EnumDefinition { +EnumDefinitionName name } EnumDefinition \"*\" --> PermissibleValue: permissible_values class PermissibleValue { +String text +String description +UriOrCurie meaning }","title":"EnumDefinition: Normative subset UML"},{"location":"03schemas/#typedefinition-metaclass","text":"metamodel documentation: TypeDefinition Instances of TypeDefinition are themselves instantiable . For example, a schema might contain a TypeDefinition with name \"PhoneNumber\". This is an instance of TypeDefinition, and can itself be instantiated by individual phone numbers.","title":"TypeDefinition Metaclass"},{"location":"03schemas/#typedefinition-normative-subset-metaslots","text":"Any instance t of a TypeDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier type_uri 0..1 xsd:anyURI The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 xsd:string python base type that implements this type definition repr 0..1 xsd:string the name of the python object that implements this type definition pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"TypeDefinition: Normative subset metaslots"},{"location":"03schemas/#typedefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram class TypeExpression { +TypeDefinitionName range } TypeExpression \"*\" --> AnonymousTypeExpression: any_of TypeExpression \"*\" --> AnonymousTypeExpression: exactly_one_of TypeExpression \"*\" --> AnonymousTypeExpression: none_of TypeExpression \"*\" --> AnonymousTypeExpression: all_of AnonymousTypeExpression --|> TypeExpression TypeDefinition --|> TypeExpression class TypeDefinition { +TypeDefinitionName name +TypeDefinitionName typeof +TypeDefinitionName[] mixins +Uri uri +String base +String repr } TypeDefinition --|> TypeExpression: mixin TypeDefinition --|> Element: is_a","title":"TypeDefinition: Normative subset UML"},{"location":"03schemas/#default-types","text":"LinkML includes a default schema of types Schema: https://w3id.org/linkml/types.yaml . Documentation: https://linkml.io/linkml-model/docs/#types These are: Boolean (Bool) - A binary (true or false) value Date (XSDDate) - a date (year, month and day) in an idealized calendar Datetime (XSDDateTime) - The combination of a date and time Decimal (Decimal) - A real number with arbitrary precision that conforms to the xsd:decimal specification Double (float) - A real number that conforms to the xsd:double specification Float (float) - A real number that conforms to the xsd:float specification Integer (int) - An integer Ncname (NCName) - Prefix part of CURIE Nodeidentifier (NodeIdentifier) - A URI, CURIE or BNODE that represents a node in a model. Objectidentifier (ElementIdentifier) - A URI or CURIE that represents an object in the model. String (str) - A character string Time (XSDTime) - A time object represents a (local) time of day, independent of any particular day Uri (URI) - a complete URI Uriorcurie (URIorCURIE) - a URI or a CURIE The type schema can be imported, used directly, or used as a basis to extend new types","title":"Default Types"},{"location":"03schemas/#classdefinitionreference-metaclass","text":"ClassDefinitionReferences are primitive elements that provide a way to reference a particular instances. ClassDefinitionReferences are not part of the asserted schema but are derived from derivation rules -- see next section","title":"ClassDefinitionReference Metaclass"},{"location":"03schemas/#prefix-metaclass","text":"metamodel documentation: Prefix A schema can contain any number of prefixes. Each prefix maps a short name such as \"owl\" to a URI. These are used to determine the canonical URI for any element.","title":"Prefix Metaclass"},{"location":"03schemas/#prefix-normative-subset-metaslots","text":"Name Cardinality and Range Description prefix_prefix 0..1 xsd:string the nsname (sans ':' for a given prefix) prefix_reference 1..1 xsd:anyURI A URI associated with a given prefix","title":"Prefix: Normative subset metaslots"},{"location":"03schemas/#prefix-normative-subset-uml","text":"classDiagram SchemaDefinition \"*\" --> \"*\" Prefix: prefixes class Prefix { +Ncname prefix_prefix +Uri prefix_reference }","title":"Prefix: Normative subset UML"},{"location":"03schemas/#prefix-example-functional-syntax","text":"SchemaDefinition( prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ])","title":"Prefix Example, Functional Syntax"},{"location":"03schemas/#prefix-example-yaml","text":"prefixes: linkml: https://w3id.org/linkml/ schema: http://schema.org/ wgs: http://www.w3.org/2003/01/geo/wgs84_pos# qudt: http://qudt.org/1.1/schema/qudt#","title":"Prefix Example, YAML"},{"location":"03schemas/#complete-schema-example-informative","text":"For example, consider a schema that models representations of individual people and organizations they belong to may include a class definition Person , and slot definitions for name , address , relationships and so on. This might be depicted in UML as: classDiagram Person \"0\" --> \"*\" Person: knows class Person { +String id +String name +Float height +Date date_of_birth +JobCode occupation } This would have a YAML serialization (see section 6): classes: Person: description: ... slots: - id - name - height - date_of_birth - occupation - knows slots: id: identifier: true range: string name: range: string date_of_birth: range: date height: range: float occupation: range: JobCode knows: range: Person multivalued: true enums: JobCode: permissible_values: ForkliftDriver: ...: types: date: ... Because schemas, are instances of the metamodel, this hypothetical schema may be serialized in functional instance syntax as follows: SchemaDefinition( id=String(\"http://example.org/organization\"), name=String(\"organization\"), prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"org\") prefix_reference=Uri(\"http://example.org/organization/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ], default_prefix=String(\"org\"), imports=[ Uriorcurie(\"linkml:types\") ], classes=[ ClassDefinition( name=String(\"Person\"), slots=[ String(\"id\"), String(\"name\"), String(\"height\"), String(\"age\"), String(\"knows\"), String(\"job\"), ... ] ), ClassDefinition( name=String(\"Organization\"), slots=[ String(\"id\"), ... ] ), ... ], slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"occupation\"), description=String(\"...\"), range=String(\"JobCode\"), ... ), SlotDefinition( name=String(\"date_of_birth\"), description=String(\"...\"), range=String(\"Date\"), ... ), SlotDefinition( name=String(\"knows\"), description=String(\"...\"), range=String(\"Person\"), multivalued=Boolean(True), ... ) ], enums=[ EnumDefinition( name=String(\"JobCode\"), permissible_values=[...], ) ], types=[ TypeDefinition( name=String(\"Date\"), ... ), TypeDefinition( name=String(\"String\"), ... ), ] )","title":"Complete Schema Example (Informative)"},{"location":"04derived-schemas/","text":"Derived Schemas This section describes rules that can be applied to a schema to obtain a derived (aka induced ) schema. The derived schema can be materialized, or it may be present as a view onto a schema. A derived view may also be referred to as an inferred or induced view. flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation Derivations happen via rules that are specified below, using a set of convenience functions Conventions We use m to denote the input or asserted schema (model), and m D to denote the derived schema Functions Function: GetIdentifierSlot The function GetIdentifierSlot ( c ) takes a ClassDefinition or ClassDefinitionName as input and returns: the name of a derived attribute s in c where s.identifier is True in m D None if there is no such slot An error if there are multiple such slots Function: Closure The function Closure ( x , s ) takes as input an element x and a metaslot s and returns the mathematical closure of s where s is treated as a relation between instances i and j that holds when either: s is not multivalued: i.s = j s is multivalued: j member-of i.s The ReflexiveClosure includes x Function: Parents Parents itself is the union of is_a and mixins . Parents (x) = {e : e = x.is_a \\/ e in x.mixins } Function: Ancestors The function Ancestors ( x ) returns the Closure of the Parents function applied to x . The function ReflexiveAncestors uses the ReflexiveClosure . Derivation Rules Rule: Model Imports Each model imports zero to many imports, indicated by the SchemaDefinition . imports metaslot. m D is set to be the union of all schema elements from the ReflexiveClosure of m.imports When copying an element x from an import into m D , the name x.name must be unique - if the same name has been used in another model, the derivation procedure fails, and an error is thrown. Note : If two or more models import the same target (e.g. m1 imports m2 and m3 and m2 imports m3 ), m3 will be only be resolved once. Note : Two models are considered to be \"identical\" if they both have the same id . If m2 and m3 both have id: http://models-r.us/modelA , it is assumed that, despite the different location, they represent the same thing. LinkML will check the model version field and will raise an error if m2 has version: 1.0.0 and m3 has version: 1.0.1 Each imported module must be resolved - i.e the value of the import slot is mapped to a location on disk or on the web Rule: fromschema elements Each element in the schema as assigned a metaslot fromschema value. This is the value of the id of the schema in which that element is defined. This is preserved over imports, such that if m imports m2 , and m2 defines a class c , then m D [c].fromschema = m2 Rule: Applicable Slot Names The set of applicable slot names for a class c are determined by taking the union of: The names of all values of x.attributes The names of all values of x.slots For all x in ReflexiveAncestors(c) Rule: Derived Attributes Derived attributes can be calculated for every applicable slot name for any class c c.attributes[s] = DerivedAttributes(c,s) This is the combination of asserted attributes for c, as well as asserted attributes for ancestors of c, as well as the SlotDefinition corresponding to that attribute, together with any overrides specified by slot_usage in c and ancestors of c attributes asserted directly in c.attributes in the base schema attributes derived from each SlotDefinition s in c.slots by looking up s in m D .slots and copying the slot-value assignments from these SlotDefinitions overriding these slot-value assignments with any slot-value assignments provided by c.slot_usage[s] inheriting from parents of c using precedence rules inheriting from parents of s The precedence rules for derived attributes are as follows: If a metaslot s is declared multivalued then when copying s from a parent to a child, the values are appended. If a metaslot s is declared multivalued if a slot is multi valued then copying will append, unless the element already exists. if the slot is single valued, and intersection rules can be applied to the slot, then these are performed on all values if the slot is single valued, and intersection rules cannot be applied to the slot, then the following precedence rules are applied: metaslot values from slot_usage take the highest priority metaslot values from the slot definition take the next highest priority direct mixins take the next highest priority. where multiple direct mixins are provided as a list, the last element takes highest priority direct is_as take the next highest priority the above two rules are applied one level up, and then recursively applied Intersection rules metaslot rule maximum_value min(v1,v2) minimum_value max(v1,v2) pattern TBD range IF subsumes(v1,v2) then v2 ELSE IF subsumes(v2,v1) then v2 ELSE UNDEFINED If the result of applying any intersection rule is UNDEFINED then we fall back on precedence rules Rule: Default Range For all attributes in the derived model, if a range is not assigned using the above method, then the range is assigned a value corresponding to the value of default_range for the schema in which the slot is defined. Rule: Derived Class and Slot URIs For each class or slot, if a class_uri or slot_uri is not specified, then this is derived by concatenating m.default_prefix with the CURIE separator : followed by the SafeUpperCamelCase encoding of the name of that class or slot definition Rule: Generation of patterns from structured patterns For any slot s , if s.structured_pattern = p and p is not None then s.pattern is assigned a value based on the following procedure: If p.interpolated is True, then the value of s.syntax is interpolated , by replacing all occurrences of braced text {VAR} with the value of VAR . The value of VAR is obtained using m.settings[VAR] , where m is the schema in which p is introduced. If p.interpolated is not True, then the value of s.syntax is used directly. If p.partial_match is not True, then s.pattern has a '^' character inserted at the begining and a '$' character inserted as the end. Rule: Generation of ClassDefinitionReferences For every ClassDefinition c , if there exists a slot s such that s.identifer=True , then a corresponding ClassDefinitionReference r is generated. r.name is assigned to be the concatenation of c.name and s.name r functionally serves as a foreign key to instances of r , and allows for non-inlined representation of instance references in tree-based formats such as JSON. Structural Conformance Rules Rule: Each referenced entity must be present Every ClassDefinition , ClassDefinitionReference , SlotDefinitionReference , EnumDefinitionReference , and TypeDefinitionReference must be resolvable within m D However, not every element needs to be referenced. For example, it is valid to have a list of SlotDefinitions that are never used in m D . ClassDefinition Structural Conformance Rules Each c in m D .classes must conform to the rules below: c must be an instance of a ClassDefinition c must have a unique name c.name , and this name must not be shared by any other class or element in m D c lists permissible slots in c.slots , the range of this is a reference to a SlotDefinition in m D .slots c defines how slots are used in the context of c via a collection of SlotDefinitions specified in c.slot_usage c may define local slots using c.attributes , the value of this is a. collection of SlotDefinitions c may have certain boolean properties defined such as c.mixin and c.abstract c must have exactly one value for c.class_uri in m D , and the value must be an instance of the builtin type UriOrCurie c may have parent ClassDefinitions defined via c.is_a and c.mixins the value of c.is_a must be a ClassDefinitionReference the value of c.mixins must be a collection of ClassDefinitonReferences For any parent p of c , if p.mixin is True, then c.mixin SHOULD be True c includes additional rules in c.rules and c.classificiation_rules c may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM SlotDefinition Structural Conformance Rules Each s in m D .slots must conform to the rules below: s must be an instance of a SlotDefinition s must have a unique name s.name , and this name must not be shared by any other type or element s must have a range specified via s.range in m D s may have an assignment s.identifier which is True if s plays the role of a unique identifier s may have certain boolean properties defined such as s.mixin and s.abstract s must have exactly one value for s.slot_uri in m D , and the value must be an instance of the builtin type UriOrCurie s may have parent SlotDefinitions defined via s.is_a and s.mixins the value of s.is_a must be a SlotDefinitionReference the value of s.mixins must be a collection of SlotDefinitionReference s For any parent p of s , if p.mixin is True, then s.mixin SHOULD be True s may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM TypeDefinition Structural Conformance Rules Each s in m D .types must conform to the rules below: t must be an instance of a TypeDefinition t must have a unique name t.name , and this name must not be shared by any other type or element t must have a mapping to an xsd type provided via t.uri in m D t may have a parent type declared via t.typeof t may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM EnumDefinition Structural Conformance Rules Each e in m D .enums must conform to the rules below: e must be an instance of a EnumDefinition e must have a unique name e.name , and this name must not be shared by any other enum or element e lists all static permissible values via e.permissible_values , the value of which is a list of instances of the MM class PermissibleValue e may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM ClassDefinitionReference Structural Conformance Rules Each r in m D .class_references must conform to the rules below: r must be an instance of a ClassDefinitionReference r must have a unique name r.name , and this name must not be shared by any other type or element Metamodel Conformance Rules Both the asserted and derived schema should be valid instances of the LinkML metamodel MM using the instance validation rules described in the next section","title":"Derived Schemas"},{"location":"04derived-schemas/#derived-schemas","text":"This section describes rules that can be applied to a schema to obtain a derived (aka induced ) schema. The derived schema can be materialized, or it may be present as a view onto a schema. A derived view may also be referred to as an inferred or induced view. flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation Derivations happen via rules that are specified below, using a set of convenience functions","title":"Derived Schemas"},{"location":"04derived-schemas/#conventions","text":"We use m to denote the input or asserted schema (model), and m D to denote the derived schema","title":"Conventions"},{"location":"04derived-schemas/#functions","text":"","title":"Functions"},{"location":"04derived-schemas/#function-getidentifierslot","text":"The function GetIdentifierSlot ( c ) takes a ClassDefinition or ClassDefinitionName as input and returns: the name of a derived attribute s in c where s.identifier is True in m D None if there is no such slot An error if there are multiple such slots","title":"Function: GetIdentifierSlot"},{"location":"04derived-schemas/#function-closure","text":"The function Closure ( x , s ) takes as input an element x and a metaslot s and returns the mathematical closure of s where s is treated as a relation between instances i and j that holds when either: s is not multivalued: i.s = j s is multivalued: j member-of i.s The ReflexiveClosure includes x","title":"Function: Closure"},{"location":"04derived-schemas/#function-parents","text":"Parents itself is the union of is_a and mixins . Parents (x) = {e : e = x.is_a \\/ e in x.mixins }","title":"Function: Parents"},{"location":"04derived-schemas/#function-ancestors","text":"The function Ancestors ( x ) returns the Closure of the Parents function applied to x . The function ReflexiveAncestors uses the ReflexiveClosure .","title":"Function: Ancestors"},{"location":"04derived-schemas/#derivation-rules","text":"","title":"Derivation Rules"},{"location":"04derived-schemas/#rule-model-imports","text":"Each model imports zero to many imports, indicated by the SchemaDefinition . imports metaslot. m D is set to be the union of all schema elements from the ReflexiveClosure of m.imports When copying an element x from an import into m D , the name x.name must be unique - if the same name has been used in another model, the derivation procedure fails, and an error is thrown. Note : If two or more models import the same target (e.g. m1 imports m2 and m3 and m2 imports m3 ), m3 will be only be resolved once. Note : Two models are considered to be \"identical\" if they both have the same id . If m2 and m3 both have id: http://models-r.us/modelA , it is assumed that, despite the different location, they represent the same thing. LinkML will check the model version field and will raise an error if m2 has version: 1.0.0 and m3 has version: 1.0.1 Each imported module must be resolved - i.e the value of the import slot is mapped to a location on disk or on the web","title":"Rule: Model Imports"},{"location":"04derived-schemas/#rule-fromschema-elements","text":"Each element in the schema as assigned a metaslot fromschema value. This is the value of the id of the schema in which that element is defined. This is preserved over imports, such that if m imports m2 , and m2 defines a class c , then m D [c].fromschema = m2","title":"Rule: fromschema elements"},{"location":"04derived-schemas/#rule-applicable-slot-names","text":"The set of applicable slot names for a class c are determined by taking the union of: The names of all values of x.attributes The names of all values of x.slots For all x in ReflexiveAncestors(c)","title":"Rule: Applicable Slot Names"},{"location":"04derived-schemas/#rule-derived-attributes","text":"Derived attributes can be calculated for every applicable slot name for any class c c.attributes[s] = DerivedAttributes(c,s) This is the combination of asserted attributes for c, as well as asserted attributes for ancestors of c, as well as the SlotDefinition corresponding to that attribute, together with any overrides specified by slot_usage in c and ancestors of c attributes asserted directly in c.attributes in the base schema attributes derived from each SlotDefinition s in c.slots by looking up s in m D .slots and copying the slot-value assignments from these SlotDefinitions overriding these slot-value assignments with any slot-value assignments provided by c.slot_usage[s] inheriting from parents of c using precedence rules inheriting from parents of s The precedence rules for derived attributes are as follows: If a metaslot s is declared multivalued then when copying s from a parent to a child, the values are appended. If a metaslot s is declared multivalued if a slot is multi valued then copying will append, unless the element already exists. if the slot is single valued, and intersection rules can be applied to the slot, then these are performed on all values if the slot is single valued, and intersection rules cannot be applied to the slot, then the following precedence rules are applied: metaslot values from slot_usage take the highest priority metaslot values from the slot definition take the next highest priority direct mixins take the next highest priority. where multiple direct mixins are provided as a list, the last element takes highest priority direct is_as take the next highest priority the above two rules are applied one level up, and then recursively applied Intersection rules metaslot rule maximum_value min(v1,v2) minimum_value max(v1,v2) pattern TBD range IF subsumes(v1,v2) then v2 ELSE IF subsumes(v2,v1) then v2 ELSE UNDEFINED If the result of applying any intersection rule is UNDEFINED then we fall back on precedence rules","title":"Rule: Derived Attributes"},{"location":"04derived-schemas/#rule-default-range","text":"For all attributes in the derived model, if a range is not assigned using the above method, then the range is assigned a value corresponding to the value of default_range for the schema in which the slot is defined.","title":"Rule: Default Range"},{"location":"04derived-schemas/#rule-derived-class-and-slot-uris","text":"For each class or slot, if a class_uri or slot_uri is not specified, then this is derived by concatenating m.default_prefix with the CURIE separator : followed by the SafeUpperCamelCase encoding of the name of that class or slot definition","title":"Rule: Derived Class and Slot URIs"},{"location":"04derived-schemas/#rule-generation-of-patterns-from-structured-patterns","text":"For any slot s , if s.structured_pattern = p and p is not None then s.pattern is assigned a value based on the following procedure: If p.interpolated is True, then the value of s.syntax is interpolated , by replacing all occurrences of braced text {VAR} with the value of VAR . The value of VAR is obtained using m.settings[VAR] , where m is the schema in which p is introduced. If p.interpolated is not True, then the value of s.syntax is used directly. If p.partial_match is not True, then s.pattern has a '^' character inserted at the begining and a '$' character inserted as the end.","title":"Rule: Generation of patterns from structured patterns"},{"location":"04derived-schemas/#rule-generation-of-classdefinitionreferences","text":"For every ClassDefinition c , if there exists a slot s such that s.identifer=True , then a corresponding ClassDefinitionReference r is generated. r.name is assigned to be the concatenation of c.name and s.name r functionally serves as a foreign key to instances of r , and allows for non-inlined representation of instance references in tree-based formats such as JSON.","title":"Rule: Generation of ClassDefinitionReferences"},{"location":"04derived-schemas/#structural-conformance-rules","text":"","title":"Structural Conformance Rules"},{"location":"04derived-schemas/#rule-each-referenced-entity-must-be-present","text":"Every ClassDefinition , ClassDefinitionReference , SlotDefinitionReference , EnumDefinitionReference , and TypeDefinitionReference must be resolvable within m D However, not every element needs to be referenced. For example, it is valid to have a list of SlotDefinitions that are never used in m D .","title":"Rule: Each referenced entity must be present"},{"location":"04derived-schemas/#classdefinition-structural-conformance-rules","text":"Each c in m D .classes must conform to the rules below: c must be an instance of a ClassDefinition c must have a unique name c.name , and this name must not be shared by any other class or element in m D c lists permissible slots in c.slots , the range of this is a reference to a SlotDefinition in m D .slots c defines how slots are used in the context of c via a collection of SlotDefinitions specified in c.slot_usage c may define local slots using c.attributes , the value of this is a. collection of SlotDefinitions c may have certain boolean properties defined such as c.mixin and c.abstract c must have exactly one value for c.class_uri in m D , and the value must be an instance of the builtin type UriOrCurie c may have parent ClassDefinitions defined via c.is_a and c.mixins the value of c.is_a must be a ClassDefinitionReference the value of c.mixins must be a collection of ClassDefinitonReferences For any parent p of c , if p.mixin is True, then c.mixin SHOULD be True c includes additional rules in c.rules and c.classificiation_rules c may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"ClassDefinition Structural Conformance Rules"},{"location":"04derived-schemas/#slotdefinition-structural-conformance-rules","text":"Each s in m D .slots must conform to the rules below: s must be an instance of a SlotDefinition s must have a unique name s.name , and this name must not be shared by any other type or element s must have a range specified via s.range in m D s may have an assignment s.identifier which is True if s plays the role of a unique identifier s may have certain boolean properties defined such as s.mixin and s.abstract s must have exactly one value for s.slot_uri in m D , and the value must be an instance of the builtin type UriOrCurie s may have parent SlotDefinitions defined via s.is_a and s.mixins the value of s.is_a must be a SlotDefinitionReference the value of s.mixins must be a collection of SlotDefinitionReference s For any parent p of s , if p.mixin is True, then s.mixin SHOULD be True s may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"SlotDefinition Structural Conformance Rules"},{"location":"04derived-schemas/#typedefinition-structural-conformance-rules","text":"Each s in m D .types must conform to the rules below: t must be an instance of a TypeDefinition t must have a unique name t.name , and this name must not be shared by any other type or element t must have a mapping to an xsd type provided via t.uri in m D t may have a parent type declared via t.typeof t may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"TypeDefinition Structural Conformance Rules"},{"location":"04derived-schemas/#enumdefinition-structural-conformance-rules","text":"Each e in m D .enums must conform to the rules below: e must be an instance of a EnumDefinition e must have a unique name e.name , and this name must not be shared by any other enum or element e lists all static permissible values via e.permissible_values , the value of which is a list of instances of the MM class PermissibleValue e may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"EnumDefinition Structural Conformance Rules"},{"location":"04derived-schemas/#classdefinitionreference-structural-conformance-rules","text":"Each r in m D .class_references must conform to the rules below: r must be an instance of a ClassDefinitionReference r must have a unique name r.name , and this name must not be shared by any other type or element","title":"ClassDefinitionReference Structural Conformance Rules"},{"location":"04derived-schemas/#metamodel-conformance-rules","text":"Both the asserted and derived schema should be valid instances of the LinkML metamodel MM using the instance validation rules described in the next section","title":"Metamodel Conformance Rules"},{"location":"05validation/","text":"Validation using Schemas Validation is a procedure that takes as input: A LinkML instance i , where i is to be validated A LinkML instance root . This MUST contain i and MAY be the same as i A schema m The validation procedure will produce output that can be used to determine if the instance is structurally and semantically valid according to the schema. The formal specification of the validation procedure takes as input a derived schema m D : flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation I[Instance] --> Validation{Validation Procedure} Validation -->|produces| Results[Validation Results] Mstar --> Validation Actual implementations may choose to perform this composition or work directly on the asserted schema. The following holds for any validation procedure: The output MUST include a boolean slot indicating whether the input can be demonstrated to be false The output SHOULD include additional information about the nature of all problems encountered. The output SHOULD be conformant with the LinkML validation schema. The output MAY also return cases where recommendations are not adhered to The output MAY also be combined with parsing to yield the precise location (i.e. line numbers) in the source serialization document where problems are found. The procedure MAY restrict validation to defined subsets (profiles) of the Metamodel The procedure SHOULD return in its payload an indication of which profile and version is used. Validation procedure for instances The validation procedure is to first take the metaclass that is instantiated by the type of the instance i , and apply one of the 4 checks below, with each check performing its own sub-rules. The ClassDefinition check is recursive , checking each slot-value assignment. This means a check on any instance will always validate the full instance tree. Validation of ClassDefinitions Given an instance i of a ClassDefinition: ClassDefinitionName ( Assignments ) Where Assignments is a collection of length N , with index i..N and members slot_i=value_i , and ClassDefinitionName is the name of a ClassDefinition in m D , such that C =m D .classes[ClassDefinitionName] Rule: Assignment values must be valid for each slot=value assignment in Assignments , the validation procedure is performed on value , with root remaining the same Rule: ClassDefinition instances must instantiate a class in the schema ClassDefinitionName MUST be the name of a ClassDefinition in m D C is assigned to be the value of m D [ClassDefinitionName] Assignments is assigned to be the value of C.attributes (see the previous section) C SHOULD have all the following properties: C.deprecated SHOULD be None C.abstract SHOULD NOT be True C.mixin SHOULD NOT be True Rule: identifiers must be unique We define a procedure IdVal ( i ) which yields the value of i.<identifier_slot> where identifier_slot is the slot n Assignments with metaslot assignment identifier = True If there is no such slot then **IdVal**( i`) is None and this check is ignored. i is invalid if there exists another instance j such that j is reachable from root , and IdVal ( i )= IdVal ( j ) and i and j are distinct. Rule: All assignments must be to permitted slots For each s=value assignment in < Assignment1 >, < Assignment2 >, ..., < AssignmentN >: s must be in Assignments Rule: All required slots must be specified For each slot s in Assignments , if s.required=True , then i.<s> must be neither None nor the empty collection [] Rule: All recommended slots should be specified For each slot s in Assignments , if s.recommended=True , then i.<s> should be neither None nor the empty collection [] If this condition is not met, this is considered a warning rather than invalidity Rule: Assigned values must conform to multivalued cardinality For each slot s in Assignments , if s.multivalued is True, then i.<s> must be a collection or None If s.multivalued is False, then i.<s> must not be a collection Rule: values should be within stated bounds For each slot s in Assignments , if s.maximum_value is not None, then i.<s> must be a number and must be less that or equal to the maximum value if s.minimum_value is not None, then i.<s> must be a number and must be greater that or equal to the minimum value Rule: values should equal evaluable expression For each slot s in Assignments , if s.equals_expression is not None, then i.<s> must equal the value of Eval(s.equals_expression) . See section on expression language for details of syntax. Note: this rule can be executed in inference mode Rule: values should equal string_serialization For each slot s in Assignments , if s.string_serialization is not None, then i.<s> must equal the value of Stringify(s.string_serialization) . See section on expression language for details of syntax. Rule: values should equal regular expression patterns Note: this rule can be executed in inference mode Range class instantiation check For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.classes , then s.range must be in ReflexiveAncestors(Type(i.<s>)) Additional checks MAY be performed based on whether s.inlined is True if s.inlined , then i.<s> SHOULD NOT be a Reference if s.inlined is False, then EITHER: i.<s> SHOULD be a Reference OR i.<s> instantiates a class R such that R has no slot rs that is declared to be an identifier. i.e. rs.identifier = True Boolean combinations of expressions There are 4 boolean operator metaslots: any_of exactly_one_of none_of all_of These can apply to classes, slots, types, or enums. The range is always a list of operand expressions of the same type. In all cases, the semantics are as follows: any_of: true if there exists a member of the operands that evaluates to true for empty lists this is always false exactly_one_of: true if there exists a member of the operands that evaluates to true, and all other members evaluate to false for empty lists this is always false none_of: true if there does not exist a member of the operands that evaluates to true for empty lists this is always true for lists of length 1 this is the same as the logical NOT operator for lists of length 2 this is the same as the logical XOR operator all_of: true if there are no members that evaluate to false for empty lists this is always true range expression checks For each slot s in Assignments , if i.<s> is not None, and RE = s.range_expression is not None, then a check CE ( x ) is performed on i.<s> Rule evaluation For each rule r in C .rules: if r.preconditions is None or r.preconditions is satisfied, then r.postconditions are applied Classification Rule evaluation type designator checks Validation of TypeDefinitions For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.types , where i.<s> = *T*( **AtomicValue** ) must match s.range , here T.uri is used to determine the type: for xsd floats, doubles, and decimals, AtomicValue must be a decimal- for xsd floats, doubles, and decimals, AtomicValue must be a decimal for xsd ints, AtomicValue must be an Integer for xsd dates, datetimes, and times, AtomicValue must be a string conforming to the relevant ISO type for xsd booleans, AtomicValue must be True or False Validation of EnumDefinitions For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.enums , then i.<s> must be equal to pv.text for some pv in m*.enums[s.range] Inference of new values","title":"Validation using Schemas"},{"location":"05validation/#validation-using-schemas","text":"Validation is a procedure that takes as input: A LinkML instance i , where i is to be validated A LinkML instance root . This MUST contain i and MAY be the same as i A schema m The validation procedure will produce output that can be used to determine if the instance is structurally and semantically valid according to the schema. The formal specification of the validation procedure takes as input a derived schema m D : flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation I[Instance] --> Validation{Validation Procedure} Validation -->|produces| Results[Validation Results] Mstar --> Validation Actual implementations may choose to perform this composition or work directly on the asserted schema. The following holds for any validation procedure: The output MUST include a boolean slot indicating whether the input can be demonstrated to be false The output SHOULD include additional information about the nature of all problems encountered. The output SHOULD be conformant with the LinkML validation schema. The output MAY also return cases where recommendations are not adhered to The output MAY also be combined with parsing to yield the precise location (i.e. line numbers) in the source serialization document where problems are found. The procedure MAY restrict validation to defined subsets (profiles) of the Metamodel The procedure SHOULD return in its payload an indication of which profile and version is used.","title":"Validation using Schemas"},{"location":"05validation/#validation-procedure-for-instances","text":"The validation procedure is to first take the metaclass that is instantiated by the type of the instance i , and apply one of the 4 checks below, with each check performing its own sub-rules. The ClassDefinition check is recursive , checking each slot-value assignment. This means a check on any instance will always validate the full instance tree.","title":"Validation procedure for instances"},{"location":"05validation/#validation-of-classdefinitions","text":"Given an instance i of a ClassDefinition: ClassDefinitionName ( Assignments ) Where Assignments is a collection of length N , with index i..N and members slot_i=value_i , and ClassDefinitionName is the name of a ClassDefinition in m D , such that C =m D .classes[ClassDefinitionName]","title":"Validation of ClassDefinitions"},{"location":"05validation/#rule-assignment-values-must-be-valid","text":"for each slot=value assignment in Assignments , the validation procedure is performed on value , with root remaining the same","title":"Rule: Assignment values must be valid"},{"location":"05validation/#rule-classdefinition-instances-must-instantiate-a-class-in-the-schema","text":"ClassDefinitionName MUST be the name of a ClassDefinition in m D C is assigned to be the value of m D [ClassDefinitionName] Assignments is assigned to be the value of C.attributes (see the previous section) C SHOULD have all the following properties: C.deprecated SHOULD be None C.abstract SHOULD NOT be True C.mixin SHOULD NOT be True","title":"Rule: ClassDefinition instances must instantiate a class in the schema"},{"location":"05validation/#rule-identifiers-must-be-unique","text":"We define a procedure IdVal ( i ) which yields the value of i.<identifier_slot> where identifier_slot is the slot n Assignments with metaslot assignment identifier = True If there is no such slot then **IdVal**( i`) is None and this check is ignored. i is invalid if there exists another instance j such that j is reachable from root , and IdVal ( i )= IdVal ( j ) and i and j are distinct.","title":"Rule: identifiers must be unique"},{"location":"05validation/#rule-all-assignments-must-be-to-permitted-slots","text":"For each s=value assignment in < Assignment1 >, < Assignment2 >, ..., < AssignmentN >: s must be in Assignments","title":"Rule: All assignments must be to permitted slots"},{"location":"05validation/#rule-all-required-slots-must-be-specified","text":"For each slot s in Assignments , if s.required=True , then i.<s> must be neither None nor the empty collection []","title":"Rule: All required slots must be specified"},{"location":"05validation/#rule-all-recommended-slots-should-be-specified","text":"For each slot s in Assignments , if s.recommended=True , then i.<s> should be neither None nor the empty collection [] If this condition is not met, this is considered a warning rather than invalidity","title":"Rule: All recommended slots should be specified"},{"location":"05validation/#rule-assigned-values-must-conform-to-multivalued-cardinality","text":"For each slot s in Assignments , if s.multivalued is True, then i.<s> must be a collection or None If s.multivalued is False, then i.<s> must not be a collection","title":"Rule: Assigned values must conform to multivalued cardinality"},{"location":"05validation/#rule-values-should-be-within-stated-bounds","text":"For each slot s in Assignments , if s.maximum_value is not None, then i.<s> must be a number and must be less that or equal to the maximum value if s.minimum_value is not None, then i.<s> must be a number and must be greater that or equal to the minimum value","title":"Rule: values should be within stated bounds"},{"location":"05validation/#rule-values-should-equal-evaluable-expression","text":"For each slot s in Assignments , if s.equals_expression is not None, then i.<s> must equal the value of Eval(s.equals_expression) . See section on expression language for details of syntax. Note: this rule can be executed in inference mode","title":"Rule: values should equal evaluable expression"},{"location":"05validation/#rule-values-should-equal-string_serialization","text":"For each slot s in Assignments , if s.string_serialization is not None, then i.<s> must equal the value of Stringify(s.string_serialization) . See section on expression language for details of syntax.","title":"Rule: values should equal string_serialization"},{"location":"05validation/#rule-values-should-equal-regular-expression-patterns","text":"Note: this rule can be executed in inference mode","title":"Rule: values should equal regular expression patterns"},{"location":"05validation/#range-class-instantiation-check","text":"For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.classes , then s.range must be in ReflexiveAncestors(Type(i.<s>)) Additional checks MAY be performed based on whether s.inlined is True if s.inlined , then i.<s> SHOULD NOT be a Reference if s.inlined is False, then EITHER: i.<s> SHOULD be a Reference OR i.<s> instantiates a class R such that R has no slot rs that is declared to be an identifier. i.e. rs.identifier = True","title":"Range class instantiation check"},{"location":"05validation/#boolean-combinations-of-expressions","text":"There are 4 boolean operator metaslots: any_of exactly_one_of none_of all_of These can apply to classes, slots, types, or enums. The range is always a list of operand expressions of the same type. In all cases, the semantics are as follows: any_of: true if there exists a member of the operands that evaluates to true for empty lists this is always false exactly_one_of: true if there exists a member of the operands that evaluates to true, and all other members evaluate to false for empty lists this is always false none_of: true if there does not exist a member of the operands that evaluates to true for empty lists this is always true for lists of length 1 this is the same as the logical NOT operator for lists of length 2 this is the same as the logical XOR operator all_of: true if there are no members that evaluate to false for empty lists this is always true","title":"Boolean combinations of expressions"},{"location":"05validation/#range-expression-checks","text":"For each slot s in Assignments , if i.<s> is not None, and RE = s.range_expression is not None, then a check CE ( x ) is performed on i.<s>","title":"range expression checks"},{"location":"05validation/#rule-evaluation","text":"For each rule r in C .rules: if r.preconditions is None or r.preconditions is satisfied, then r.postconditions are applied","title":"Rule evaluation"},{"location":"05validation/#classification-rule-evaluation","text":"","title":"Classification Rule evaluation"},{"location":"05validation/#type-designator-checks","text":"","title":"type designator checks"},{"location":"05validation/#validation-of-typedefinitions","text":"For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.types , where i.<s> = *T*( **AtomicValue** ) must match s.range , here T.uri is used to determine the type: for xsd floats, doubles, and decimals, AtomicValue must be a decimal- for xsd floats, doubles, and decimals, AtomicValue must be a decimal for xsd ints, AtomicValue must be an Integer for xsd dates, datetimes, and times, AtomicValue must be a string conforming to the relevant ISO type for xsd booleans, AtomicValue must be True or False","title":"Validation of TypeDefinitions"},{"location":"05validation/#validation-of-enumdefinitions","text":"For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.enums , then i.<s> must be equal to pv.text for some pv in m*.enums[s.range]","title":"Validation of EnumDefinitions"},{"location":"05validation/#inference-of-new-values","text":"","title":"Inference of new values"},{"location":"06mapping/","text":"Translation of instance graphs This section describes how LinkML instances are translated to different formats and data models. Conversion from LinkML instances to another format is called serialization or dumping Conversion to LinkML instances from another format is called parsing , loading , or deserialization The reference implementation is the linkml-runtime but other implementations that conform to this specification are valid. Translation of instances to JSON or YAML Here we define a mapping of LinkML instances to JSON. As JSON is a subset of YAML, this can also be used to load and dump from YAML. This is the canonical YAML mapping. We leave open the possibility of a direct YAML conversion in future which makes use of YAML tags to encode typing information. Serialization to JSON takes as input: a (root) instance Parsing from JSON takes as input: a JSON document a target ClassDefinitionName a SchemaDefinition Instances of ClassDefinition Given an instance i of a ClassDefinition: ClassDefinitionName ( s1=v1 , ..., sn=vn ) This is translated to a JSON object { Tr(s1) = Tr(v1), Tr(s2) = Tr(v2) ..., Tr(sn) = Tr(vn) } Note this is potentially lossy, as the type is dropped When parsing, if this is the root instance, then the target ClassDefinition is used If this is not the root instance, then the type is inferred from the root of the parent slot in the derived schema Optionally, this type is deepened if C.type_designator is not None - the value of this slot is used to set the target ClassDefinitionName Instances of None None is mapped to JSON nulls. It is conventional to omit an assignment whose value is None/null when serializing. The canonical serialization MUST omit these, but a parser MUST accept None/null values that are explicitly provided Instances of Collections of InstancesOfClass If the parent slot s.inlined_as_list=True { IdVal(member1): Tr(member1) - IdField(member1) ... IdVal(memberN): Tr(memberN) - IdField(memberN) } otherwise: [ Tr(member_1), ... Tr(member_n), ] Instances of other Collections These are always translated to lists: [ Tr(member_1), ... Tr(member_n), ] Instances of TypeDefinition The direct value is used Instances of EnumDefinition The direct value is used Instances of ClassDefinitionReference The direct value is used Translation to RDF Two RDF translations are provided: A direct translation Translation via JSON-LD, which combines Translation of a LinkML SchemaDefinition to a JSON-LD Context The standard translation of LinkML instances to JSON Both translations make use of the prefixes provided in the schema The semantic content of both is equivalent. Mapping of CURIEs to URIs LinkML provides standard types: Curie Uri Curieoruri The syntax for a CURIE is defined by W3C CURIE Syntax 1.0 curie := [ [ prefix ] ':' ] reference prefix := NCName reference := irelative-ref We define a function CurieToUri ( x ) that maps (expands) a CurieOrUri to a Uri If x is already a Uri, then x is returned, otherwise the following procedure is followed To expand a CURIE with an explicit prefix to a URI using a schema m , first m.prefixes is consulted for m.prefixes[prefix] . If this is present, then m.prefixes[prefix].prefix_reference is uses as the Base URI If this is not present, then m.prefixes[m.default_prefix].prefix_reference is used as the Base URI to obtain the URI, the Base URI is concatenated with the reference If the CURIE has no explicit prefix, and the CURIE is value of a slot s , then s.implicit_prefix is used Direct Translation of instance graphs to RDF A translation Tr operates on an instance i , in the context of a derived schema m* Instances of ClassDefinition If i is an instance of a ClassDefinition, then Tr (i) is as follows: ClassDefinitionName ( s1=v1 , ..., sn=v2 ) We assign a value to subject which will be either an IRI, or a blank node If IdVal ( i ) is None, the subject is assigned a blank node Otherwise subject = CurieToUri ( IdVal ( i )) We assign a value object for the type of i . This will be equivalent to the c.class_uri in m* This is used to generate a triple ( subject rdf:type CurieToUri ( object )) For each s=v in the assignments where s.identifier=True does not hold, and v is not None , we generate a triple ( subject TrSlot(s) Tr(v)) Here TrSlot ( s ) = CurieToUri ( s.slot_uri ) Instances of TypeDefinition If i is an instance of a TypeDefinition of type t then Tr (i) is translated to an RDF literal, with datatype CurieToUri (t.uri) Instances of EnumDefinition If i is an instance of a EnumDefinition, then Tr (i) is as follows: If i corresponds to a PermissibleValue with pv.meaning that is not None, then Tr (i) = CurieToUri (pv.meaning) Instances of ClassDefinitionReference If i is an instance of a ClassDefinitionReference then Tr (i) = CurieToUri (i.value) Translation of instance graphs to RDF graphs (via JSON-LD) To be specified Translation of instance graphs to RDF* and property graphs To be specified","title":"Translation of instance graphs"},{"location":"06mapping/#translation-of-instance-graphs","text":"This section describes how LinkML instances are translated to different formats and data models. Conversion from LinkML instances to another format is called serialization or dumping Conversion to LinkML instances from another format is called parsing , loading , or deserialization The reference implementation is the linkml-runtime but other implementations that conform to this specification are valid.","title":"Translation of instance graphs"},{"location":"06mapping/#translation-of-instances-to-json-or-yaml","text":"Here we define a mapping of LinkML instances to JSON. As JSON is a subset of YAML, this can also be used to load and dump from YAML. This is the canonical YAML mapping. We leave open the possibility of a direct YAML conversion in future which makes use of YAML tags to encode typing information. Serialization to JSON takes as input: a (root) instance Parsing from JSON takes as input: a JSON document a target ClassDefinitionName a SchemaDefinition","title":"Translation of instances to JSON or YAML"},{"location":"06mapping/#instances-of-classdefinition","text":"Given an instance i of a ClassDefinition: ClassDefinitionName ( s1=v1 , ..., sn=vn ) This is translated to a JSON object { Tr(s1) = Tr(v1), Tr(s2) = Tr(v2) ..., Tr(sn) = Tr(vn) } Note this is potentially lossy, as the type is dropped When parsing, if this is the root instance, then the target ClassDefinition is used If this is not the root instance, then the type is inferred from the root of the parent slot in the derived schema Optionally, this type is deepened if C.type_designator is not None - the value of this slot is used to set the target ClassDefinitionName","title":"Instances of ClassDefinition"},{"location":"06mapping/#instances-of-none","text":"None is mapped to JSON nulls. It is conventional to omit an assignment whose value is None/null when serializing. The canonical serialization MUST omit these, but a parser MUST accept None/null values that are explicitly provided","title":"Instances of None"},{"location":"06mapping/#instances-of-collections-of-instancesofclass","text":"If the parent slot s.inlined_as_list=True { IdVal(member1): Tr(member1) - IdField(member1) ... IdVal(memberN): Tr(memberN) - IdField(memberN) } otherwise: [ Tr(member_1), ... Tr(member_n), ]","title":"Instances of Collections of InstancesOfClass"},{"location":"06mapping/#instances-of-other-collections","text":"These are always translated to lists: [ Tr(member_1), ... Tr(member_n), ]","title":"Instances of other Collections"},{"location":"06mapping/#instances-of-typedefinition","text":"The direct value is used","title":"Instances of TypeDefinition"},{"location":"06mapping/#instances-of-enumdefinition","text":"The direct value is used","title":"Instances of EnumDefinition"},{"location":"06mapping/#instances-of-classdefinitionreference","text":"The direct value is used","title":"Instances of ClassDefinitionReference"},{"location":"06mapping/#translation-to-rdf","text":"Two RDF translations are provided: A direct translation Translation via JSON-LD, which combines Translation of a LinkML SchemaDefinition to a JSON-LD Context The standard translation of LinkML instances to JSON Both translations make use of the prefixes provided in the schema The semantic content of both is equivalent.","title":"Translation to RDF"},{"location":"06mapping/#mapping-of-curies-to-uris","text":"LinkML provides standard types: Curie Uri Curieoruri The syntax for a CURIE is defined by W3C CURIE Syntax 1.0 curie := [ [ prefix ] ':' ] reference prefix := NCName reference := irelative-ref We define a function CurieToUri ( x ) that maps (expands) a CurieOrUri to a Uri If x is already a Uri, then x is returned, otherwise the following procedure is followed To expand a CURIE with an explicit prefix to a URI using a schema m , first m.prefixes is consulted for m.prefixes[prefix] . If this is present, then m.prefixes[prefix].prefix_reference is uses as the Base URI If this is not present, then m.prefixes[m.default_prefix].prefix_reference is used as the Base URI to obtain the URI, the Base URI is concatenated with the reference If the CURIE has no explicit prefix, and the CURIE is value of a slot s , then s.implicit_prefix is used","title":"Mapping of CURIEs to URIs"},{"location":"06mapping/#direct-translation-of-instance-graphs-to-rdf","text":"A translation Tr operates on an instance i , in the context of a derived schema m*","title":"Direct Translation of instance graphs to RDF"},{"location":"06mapping/#instances-of-classdefinition_1","text":"If i is an instance of a ClassDefinition, then Tr (i) is as follows: ClassDefinitionName ( s1=v1 , ..., sn=v2 ) We assign a value to subject which will be either an IRI, or a blank node If IdVal ( i ) is None, the subject is assigned a blank node Otherwise subject = CurieToUri ( IdVal ( i )) We assign a value object for the type of i . This will be equivalent to the c.class_uri in m* This is used to generate a triple ( subject rdf:type CurieToUri ( object )) For each s=v in the assignments where s.identifier=True does not hold, and v is not None , we generate a triple ( subject TrSlot(s) Tr(v)) Here TrSlot ( s ) = CurieToUri ( s.slot_uri )","title":"Instances of ClassDefinition"},{"location":"06mapping/#instances-of-typedefinition_1","text":"If i is an instance of a TypeDefinition of type t then Tr (i) is translated to an RDF literal, with datatype CurieToUri (t.uri)","title":"Instances of TypeDefinition"},{"location":"06mapping/#instances-of-enumdefinition_1","text":"If i is an instance of a EnumDefinition, then Tr (i) is as follows: If i corresponds to a PermissibleValue with pv.meaning that is not None, then Tr (i) = CurieToUri (pv.meaning)","title":"Instances of EnumDefinition"},{"location":"06mapping/#instances-of-classdefinitionreference_1","text":"If i is an instance of a ClassDefinitionReference then Tr (i) = CurieToUri (i.value)","title":"Instances of ClassDefinitionReference"},{"location":"06mapping/#translation-of-instance-graphs-to-rdf-graphs-via-json-ld","text":"To be specified","title":"Translation of instance graphs to RDF graphs (via JSON-LD)"},{"location":"06mapping/#translation-of-instance-graphs-to-rdf-and-property-graphs","text":"To be specified","title":"Translation of instance graphs to RDF* and property graphs"},{"location":"AliasPredicateEnum/","text":"Enum: AliasPredicateEnum URI: AliasPredicateEnum Permissible Values Value Meaning Description EXACT_SYNONYM skos:exactMatch RELATED_SYNONYM skos:relatedMatch BROAD_SYNONYM skos:broaderMatch NARROW_SYNONYM skos:narrowerMatch Slots Name Description alias_predicate The relationship between an element and its alias Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: alias_predicate_enum from_schema: https://w3id.org/linkml/meta rank: 5 permissible_values: EXACT_SYNONYM: text: EXACT_SYNONYM meaning: skos:exactMatch RELATED_SYNONYM: text: RELATED_SYNONYM meaning: skos:relatedMatch BROAD_SYNONYM: text: BROAD_SYNONYM meaning: skos:broaderMatch NARROW_SYNONYM: text: NARROW_SYNONYM meaning: skos:narrowerMatch","title":"Enum: AliasPredicateEnum"},{"location":"AliasPredicateEnum/#enum-aliaspredicateenum","text":"URI: AliasPredicateEnum","title":"Enum: AliasPredicateEnum"},{"location":"AliasPredicateEnum/#permissible-values","text":"Value Meaning Description EXACT_SYNONYM skos:exactMatch RELATED_SYNONYM skos:relatedMatch BROAD_SYNONYM skos:broaderMatch NARROW_SYNONYM skos:narrowerMatch","title":"Permissible Values"},{"location":"AliasPredicateEnum/#slots","text":"Name Description alias_predicate The relationship between an element and its alias","title":"Slots"},{"location":"AliasPredicateEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AliasPredicateEnum/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AliasPredicateEnum/#linkml-source","text":"name: alias_predicate_enum from_schema: https://w3id.org/linkml/meta rank: 5 permissible_values: EXACT_SYNONYM: text: EXACT_SYNONYM meaning: skos:exactMatch RELATED_SYNONYM: text: RELATED_SYNONYM meaning: skos:relatedMatch BROAD_SYNONYM: text: BROAD_SYNONYM meaning: skos:broaderMatch NARROW_SYNONYM: text: NARROW_SYNONYM meaning: skos:narrowerMatch","title":"LinkML Source"},{"location":"AltDescription/","text":"Class: AltDescription an attributed description URI: linkml:AltDescription classDiagram class AltDescription AltDescription : alt_description_source AltDescription : alt_description_text Slots Name Cardinality and Range Description Inheritance alt_description_source 0..1 String the source of an attributed description direct alt_description_text 1..1 String text of an attributed description direct Usages used by used in type used CommonMetadata alt_descriptions range AltDescription Element alt_descriptions range AltDescription SchemaDefinition alt_descriptions range AltDescription TypeDefinition alt_descriptions range AltDescription SubsetDefinition alt_descriptions range AltDescription Definition alt_descriptions range AltDescription EnumDefinition alt_descriptions range AltDescription StructuredAlias alt_descriptions range AltDescription AnonymousExpression alt_descriptions range AltDescription PathExpression alt_descriptions range AltDescription AnonymousSlotExpression alt_descriptions range AltDescription SlotDefinition alt_descriptions range AltDescription AnonymousClassExpression alt_descriptions range AltDescription ClassDefinition alt_descriptions range AltDescription ClassRule alt_descriptions range AltDescription PatternExpression alt_descriptions range AltDescription ImportExpression alt_descriptions range AltDescription AltDescription alt_description_source domain AltDescription AltDescription alt_description_text domain AltDescription PermissibleValue alt_descriptions range AltDescription UniqueKey alt_descriptions range AltDescription Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AltDescription native linkml:AltDescription LinkML Source Direct name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - alt_description_source - alt_description_text Induced name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: alt_description_source: name: alt_description_source description: the source of an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: alt_description key: true alias: source owner: alt_description domain_of: - alt_description range: string alt_description_text: name: 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SchemaDefinition alt_descriptions range AltDescription TypeDefinition alt_descriptions range AltDescription SubsetDefinition alt_descriptions range AltDescription Definition alt_descriptions range AltDescription EnumDefinition alt_descriptions range AltDescription StructuredAlias alt_descriptions range AltDescription AnonymousExpression alt_descriptions range AltDescription PathExpression alt_descriptions range AltDescription AnonymousSlotExpression alt_descriptions range AltDescription SlotDefinition alt_descriptions range AltDescription AnonymousClassExpression alt_descriptions range AltDescription ClassDefinition alt_descriptions range AltDescription ClassRule alt_descriptions range AltDescription PatternExpression alt_descriptions range AltDescription ImportExpression alt_descriptions range AltDescription AltDescription alt_description_source domain AltDescription AltDescription alt_description_text domain AltDescription PermissibleValue alt_descriptions range AltDescription UniqueKey alt_descriptions range AltDescription","title":"Usages"},{"location":"AltDescription/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AltDescription/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AltDescription/#mappings","text":"Mapping Type Mapped Value self linkml:AltDescription native linkml:AltDescription","title":"Mappings"},{"location":"AltDescription/#linkml-source","text":"","title":"LinkML Source"},{"location":"AltDescription/#direct","text":"name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - alt_description_source - alt_description_text","title":"Direct"},{"location":"AltDescription/#induced","text":"name: alt_description description: an attributed description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: 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Annotatable <|-- PermissibleValue Annotatable <|-- UniqueKey Annotatable <|-- Annotation Annotatable : annotations Slots Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct Mixin Usage mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... 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UniqueKey a collection of slots whose values uniquely identify an instance of a class Annotation a tag/value pair with the semantics of OWL Annotation Usages used by used in type used Element annotations domain Annotatable SchemaDefinition annotations domain Annotatable TypeDefinition annotations domain Annotatable SubsetDefinition annotations domain Annotatable Definition annotations domain Annotatable EnumDefinition annotations domain Annotatable StructuredAlias annotations domain Annotatable AnonymousExpression annotations domain Annotatable PathExpression annotations domain Annotatable AnonymousSlotExpression annotations domain Annotatable SlotDefinition annotations domain Annotatable AnonymousClassExpression annotations domain Annotatable ClassDefinition annotations domain Annotatable ClassRule annotations domain Annotatable PatternExpression annotations domain Annotatable ImportExpression annotations domain Annotatable PermissibleValue annotations domain Annotatable UniqueKey annotations domain Annotatable Annotatable annotations domain Annotatable Annotation annotations domain Annotatable Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/annotations Mappings Mapping Type Mapped Value self linkml:Annotatable native linkml:Annotatable LinkML Source Direct name: annotatable description: mixin for classes that support annotations from_schema: https://w3id.org/linkml/annotations rank: 1000 mixin: true slots: - annotations Induced name: annotatable description: mixin for classes that support annotations from_schema: https://w3id.org/linkml/annotations rank: 1000 mixin: true attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotatable domain_of: - annotatable - annotation range: annotation inlined: true","title":"Class: Annotatable"},{"location":"Annotatable/#class-annotatable","text":"mixin for classes that support annotations URI: linkml:Annotatable classDiagram class Annotatable Annotatable <|-- Element Annotatable <|-- StructuredAlias Annotatable <|-- AnonymousExpression Annotatable <|-- PathExpression Annotatable <|-- ClassRule Annotatable <|-- PatternExpression Annotatable <|-- ImportExpression Annotatable <|-- PermissibleValue Annotatable <|-- UniqueKey Annotatable <|-- Annotation Annotatable : annotations","title":"Class: Annotatable"},{"location":"Annotatable/#slots","text":"Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct","title":"Slots"},{"location":"Annotatable/#mixin-usage","text":"mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Annotation a tag/value pair with the semantics of OWL Annotation","title":"Mixin Usage"},{"location":"Annotatable/#usages","text":"used by used in type used Element annotations domain Annotatable SchemaDefinition annotations domain Annotatable TypeDefinition annotations domain Annotatable SubsetDefinition annotations domain Annotatable Definition annotations domain Annotatable EnumDefinition annotations domain Annotatable StructuredAlias annotations domain Annotatable AnonymousExpression annotations domain Annotatable PathExpression annotations domain Annotatable AnonymousSlotExpression annotations domain Annotatable SlotDefinition annotations domain Annotatable AnonymousClassExpression annotations domain Annotatable ClassDefinition annotations domain Annotatable ClassRule annotations domain Annotatable PatternExpression annotations domain Annotatable ImportExpression annotations domain Annotatable PermissibleValue annotations domain Annotatable UniqueKey annotations domain Annotatable Annotatable annotations domain Annotatable Annotation annotations domain Annotatable","title":"Usages"},{"location":"Annotatable/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Annotatable/#schema-source","text":"from schema: https://w3id.org/linkml/annotations","title":"Schema Source"},{"location":"Annotatable/#mappings","text":"Mapping Type Mapped Value self linkml:Annotatable native linkml:Annotatable","title":"Mappings"},{"location":"Annotatable/#linkml-source","text":"","title":"LinkML Source"},{"location":"Annotatable/#direct","text":"name: annotatable description: mixin for classes that support annotations from_schema: https://w3id.org/linkml/annotations rank: 1000 mixin: true slots: - annotations","title":"Direct"},{"location":"Annotatable/#induced","text":"name: annotatable description: mixin for classes that support annotations from_schema: https://w3id.org/linkml/annotations rank: 1000 mixin: true attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotatable domain_of: - annotatable - annotation range: annotation inlined: true","title":"Induced"},{"location":"Annotation/","text":"Class: Annotation a tag/value pair with the semantics of OWL Annotation URI: linkml:Annotation classDiagram class Annotation Annotatable <|-- Annotation Extension <|-- Annotation Annotation : annotations Annotation : extension_tag Annotation : extension_value Annotation : extensions Inheritance Extension Annotation [ Annotatable ] Slots Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct extension_tag 1..1 Uriorcurie a tag associated with an extension Extension extension_value 1..1 String the actual annotation Extension extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extension Usages used by used in type used Element annotations range Annotation SchemaDefinition annotations range Annotation TypeDefinition annotations range Annotation SubsetDefinition annotations range Annotation Definition annotations range Annotation EnumDefinition annotations range Annotation StructuredAlias annotations range Annotation AnonymousExpression annotations range Annotation PathExpression annotations range Annotation AnonymousSlotExpression annotations range Annotation SlotDefinition annotations range Annotation AnonymousClassExpression annotations range Annotation ClassDefinition annotations range Annotation ClassRule annotations range Annotation PatternExpression annotations range Annotation ImportExpression annotations range Annotation PermissibleValue annotations range Annotation UniqueKey annotations range Annotation Annotatable annotations range Annotation Annotation annotations range Annotation Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/annotations Mappings Mapping Type Mapped Value self linkml:Annotation native linkml:Annotation LinkML Source Direct name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable slots: - annotations Induced name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotation domain_of: - annotatable - annotation range: annotation inlined: true extension_tag: name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag owner: annotation domain_of: - extension range: uriorcurie required: true extension_value: name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value owner: annotation domain_of: - extension range: string required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: annotation domain_of: - extension - extensible range: extension inlined: true","title":"Class: Annotation"},{"location":"Annotation/#class-annotation","text":"a tag/value pair with the semantics of OWL Annotation URI: linkml:Annotation classDiagram class Annotation Annotatable <|-- Annotation Extension <|-- Annotation Annotation : annotations Annotation : extension_tag Annotation : extension_value Annotation : extensions","title":"Class: Annotation"},{"location":"Annotation/#inheritance","text":"Extension Annotation [ Annotatable ]","title":"Inheritance"},{"location":"Annotation/#slots","text":"Name Cardinality and Range Description Inheritance annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation direct extension_tag 1..1 Uriorcurie a tag associated with an extension Extension extension_value 1..1 String the actual annotation Extension extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extension","title":"Slots"},{"location":"Annotation/#usages","text":"used by used in type used Element annotations range Annotation SchemaDefinition annotations range Annotation TypeDefinition annotations range Annotation SubsetDefinition annotations range Annotation Definition annotations range Annotation EnumDefinition annotations range Annotation StructuredAlias annotations range Annotation AnonymousExpression annotations range Annotation PathExpression annotations range Annotation AnonymousSlotExpression annotations range Annotation SlotDefinition annotations range Annotation AnonymousClassExpression annotations range Annotation ClassDefinition annotations range Annotation ClassRule annotations range Annotation PatternExpression annotations range Annotation ImportExpression annotations range Annotation PermissibleValue annotations range Annotation UniqueKey annotations range Annotation Annotatable annotations range Annotation Annotation annotations range Annotation","title":"Usages"},{"location":"Annotation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Annotation/#schema-source","text":"from schema: https://w3id.org/linkml/annotations","title":"Schema Source"},{"location":"Annotation/#mappings","text":"Mapping Type Mapped Value self linkml:Annotation native linkml:Annotation","title":"Mappings"},{"location":"Annotation/#linkml-source","text":"","title":"LinkML Source"},{"location":"Annotation/#direct","text":"name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable slots: - annotations","title":"Direct"},{"location":"Annotation/#induced","text":"name: annotation description: a tag/value pair with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extension mixins: - annotatable attributes: annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: annotation domain_of: - annotatable - annotation range: annotation inlined: true extension_tag: name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag owner: annotation domain_of: - extension range: uriorcurie required: true extension_value: name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value owner: annotation domain_of: - extension range: string required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: annotation domain_of: - extension - extensible range: extension inlined: true","title":"Induced"},{"location":"AnonymousClassExpression/","text":"Class: AnonymousClassExpression URI: linkml:AnonymousClassExpression classDiagram class AnonymousClassExpression ClassExpression <|-- AnonymousClassExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousClassExpression : aliases AnonymousClassExpression : all_of AnonymousClassExpression : alt_descriptions AnonymousClassExpression : annotations AnonymousClassExpression : any_of AnonymousClassExpression : broad_mappings AnonymousClassExpression : close_mappings AnonymousClassExpression : comments AnonymousClassExpression : deprecated AnonymousClassExpression : deprecated_element_has_exact_replacement AnonymousClassExpression : deprecated_element_has_possible_replacement AnonymousClassExpression : description AnonymousClassExpression : exact_mappings AnonymousClassExpression : exactly_one_of AnonymousClassExpression : examples AnonymousClassExpression : extensions AnonymousClassExpression : from_schema AnonymousClassExpression : imported_from AnonymousClassExpression : in_language AnonymousClassExpression : in_subset AnonymousClassExpression : is_a AnonymousClassExpression : mappings AnonymousClassExpression : narrow_mappings AnonymousClassExpression : none_of AnonymousClassExpression : notes AnonymousClassExpression : rank AnonymousClassExpression : related_mappings AnonymousClassExpression : see_also AnonymousClassExpression : slot_conditions AnonymousClassExpression : source AnonymousClassExpression : structured_aliases AnonymousClassExpression : title AnonymousClassExpression : todos Inheritance AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousClassExpression [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold ClassExpression exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold ClassExpression none_of 0..* AnonymousClassExpression holds if none of the expressions hold ClassExpression all_of 0..* AnonymousClassExpression holds if all of the expressions hold ClassExpression slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used PathExpression range_expression range AnonymousClassExpression SlotExpression range_expression range AnonymousClassExpression AnonymousSlotExpression range_expression range AnonymousClassExpression SlotDefinition range_expression range AnonymousClassExpression ClassExpression any_of range AnonymousClassExpression ClassExpression exactly_one_of range AnonymousClassExpression ClassExpression none_of range AnonymousClassExpression ClassExpression all_of range AnonymousClassExpression AnonymousClassExpression any_of range AnonymousClassExpression AnonymousClassExpression exactly_one_of range AnonymousClassExpression AnonymousClassExpression none_of range AnonymousClassExpression AnonymousClassExpression all_of range AnonymousClassExpression ClassDefinition classification_rules range AnonymousClassExpression ClassDefinition any_of range AnonymousClassExpression ClassDefinition exactly_one_of range AnonymousClassExpression ClassDefinition none_of range AnonymousClassExpression ClassDefinition all_of range AnonymousClassExpression ClassRule preconditions range AnonymousClassExpression ClassRule postconditions range AnonymousClassExpression ClassRule elseconditions range AnonymousClassExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousClassExpression native linkml:AnonymousClassExpression LinkML Source Direct name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing slots: - is_a Induced name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: anonymous_class_expression domain_of: - definition - anonymous_class_expression range: definition any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: anonymous_class_expression domain_of: - class_expression range: slot_definition inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_class_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_class_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_class_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_class_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_class_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_class_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_class_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_class_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_class_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_class_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_class_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_class_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_class_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_class_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_class_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_class_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_class_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_class_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: AnonymousClassExpression"},{"location":"AnonymousClassExpression/#class-anonymousclassexpression","text":"URI: linkml:AnonymousClassExpression classDiagram class AnonymousClassExpression ClassExpression <|-- AnonymousClassExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousClassExpression : aliases AnonymousClassExpression : all_of AnonymousClassExpression : alt_descriptions AnonymousClassExpression : annotations AnonymousClassExpression : any_of AnonymousClassExpression : broad_mappings AnonymousClassExpression : close_mappings AnonymousClassExpression : comments AnonymousClassExpression : deprecated AnonymousClassExpression : deprecated_element_has_exact_replacement AnonymousClassExpression : deprecated_element_has_possible_replacement AnonymousClassExpression : description AnonymousClassExpression : exact_mappings AnonymousClassExpression : exactly_one_of AnonymousClassExpression : examples AnonymousClassExpression : extensions AnonymousClassExpression : from_schema AnonymousClassExpression : imported_from AnonymousClassExpression : in_language AnonymousClassExpression : in_subset AnonymousClassExpression : is_a AnonymousClassExpression : mappings AnonymousClassExpression : narrow_mappings AnonymousClassExpression : none_of AnonymousClassExpression : notes AnonymousClassExpression : rank AnonymousClassExpression : related_mappings AnonymousClassExpression : see_also AnonymousClassExpression : slot_conditions AnonymousClassExpression : source AnonymousClassExpression : structured_aliases AnonymousClassExpression : title AnonymousClassExpression : todos","title":"Class: AnonymousClassExpression"},{"location":"AnonymousClassExpression/#inheritance","text":"AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousClassExpression [ ClassExpression ]","title":"Inheritance"},{"location":"AnonymousClassExpression/#slots","text":"Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold ClassExpression exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold ClassExpression none_of 0..* AnonymousClassExpression holds if none of the expressions hold ClassExpression all_of 0..* AnonymousClassExpression holds if all of the expressions hold ClassExpression slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"AnonymousClassExpression/#usages","text":"used by used in type used PathExpression range_expression range AnonymousClassExpression SlotExpression range_expression range AnonymousClassExpression AnonymousSlotExpression range_expression range AnonymousClassExpression SlotDefinition range_expression range AnonymousClassExpression ClassExpression any_of range AnonymousClassExpression ClassExpression exactly_one_of range AnonymousClassExpression ClassExpression none_of range AnonymousClassExpression ClassExpression all_of range AnonymousClassExpression AnonymousClassExpression any_of range AnonymousClassExpression AnonymousClassExpression exactly_one_of range AnonymousClassExpression AnonymousClassExpression none_of range AnonymousClassExpression AnonymousClassExpression all_of range AnonymousClassExpression ClassDefinition classification_rules range AnonymousClassExpression ClassDefinition any_of range AnonymousClassExpression ClassDefinition exactly_one_of range AnonymousClassExpression ClassDefinition none_of range AnonymousClassExpression ClassDefinition all_of range AnonymousClassExpression ClassRule preconditions range AnonymousClassExpression ClassRule postconditions range AnonymousClassExpression ClassRule elseconditions range AnonymousClassExpression","title":"Usages"},{"location":"AnonymousClassExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousClassExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousClassExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousClassExpression native linkml:AnonymousClassExpression","title":"Mappings"},{"location":"AnonymousClassExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousClassExpression/#direct","text":"name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing slots: - is_a","title":"Direct"},{"location":"AnonymousClassExpression/#induced","text":"name: anonymous_class_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - class_expression status: testing attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: anonymous_class_expression domain_of: - definition - anonymous_class_expression range: definition any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: anonymous_class_expression domain_of: - class_expression range: slot_definition inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_class_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_class_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_class_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_class_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_class_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_class_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_class_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_class_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_class_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_class_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_class_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_class_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_class_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_class_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_class_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_class_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_class_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_class_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_class_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"AnonymousEnumExpression/","text":"Class: AnonymousEnumExpression An enum_expression that is not named URI: linkml:AnonymousEnumExpression classDiagram class AnonymousEnumExpression EnumExpression <|-- AnonymousEnumExpression AnonymousEnumExpression : code_set AnonymousEnumExpression : code_set_tag AnonymousEnumExpression : code_set_version AnonymousEnumExpression : concepts AnonymousEnumExpression : include AnonymousEnumExpression : inherits AnonymousEnumExpression : matches AnonymousEnumExpression : minus AnonymousEnumExpression : permissible_values AnonymousEnumExpression : pv_formula AnonymousEnumExpression : reachable_from Inheritance AnonymousEnumExpression [ EnumExpression ] Slots Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression Usages used by used in type used EnumExpression include range AnonymousEnumExpression EnumExpression minus range AnonymousEnumExpression AnonymousEnumExpression include range AnonymousEnumExpression AnonymousEnumExpression minus range AnonymousEnumExpression EnumDefinition include range AnonymousEnumExpression EnumDefinition minus range AnonymousEnumExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousEnumExpression native linkml:AnonymousEnumExpression LinkML Source Direct name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression Induced name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: anonymous_enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: anonymous_enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: anonymous_enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: anonymous_enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: anonymous_enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: anonymous_enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: anonymous_enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie","title":"Class: AnonymousEnumExpression"},{"location":"AnonymousEnumExpression/#class-anonymousenumexpression","text":"An enum_expression that is not named URI: linkml:AnonymousEnumExpression classDiagram class AnonymousEnumExpression EnumExpression <|-- AnonymousEnumExpression AnonymousEnumExpression : code_set AnonymousEnumExpression : code_set_tag AnonymousEnumExpression : code_set_version AnonymousEnumExpression : concepts AnonymousEnumExpression : include AnonymousEnumExpression : inherits AnonymousEnumExpression : matches AnonymousEnumExpression : minus AnonymousEnumExpression : permissible_values AnonymousEnumExpression : pv_formula AnonymousEnumExpression : reachable_from","title":"Class: AnonymousEnumExpression"},{"location":"AnonymousEnumExpression/#inheritance","text":"AnonymousEnumExpression [ EnumExpression ]","title":"Inheritance"},{"location":"AnonymousEnumExpression/#slots","text":"Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression","title":"Slots"},{"location":"AnonymousEnumExpression/#usages","text":"used by used in type used EnumExpression include range AnonymousEnumExpression EnumExpression minus range AnonymousEnumExpression AnonymousEnumExpression include range AnonymousEnumExpression AnonymousEnumExpression minus range AnonymousEnumExpression EnumDefinition include range AnonymousEnumExpression EnumDefinition minus range AnonymousEnumExpression","title":"Usages"},{"location":"AnonymousEnumExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousEnumExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousEnumExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousEnumExpression native linkml:AnonymousEnumExpression","title":"Mappings"},{"location":"AnonymousEnumExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousEnumExpression/#direct","text":"name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression","title":"Direct"},{"location":"AnonymousEnumExpression/#induced","text":"name: anonymous_enum_expression description: An enum_expression that is not named from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - enum_expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: anonymous_enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: anonymous_enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: anonymous_enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: anonymous_enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: anonymous_enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: anonymous_enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: anonymous_enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: anonymous_enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: anonymous_enum_expression domain_of: - enum_expression range: uriorcurie","title":"Induced"},{"location":"AnonymousExpression/","text":"Class: AnonymousExpression NOTE : this is an abstract class and should not be instantiated directly URI: linkml:AnonymousExpression classDiagram class AnonymousExpression Expression <|-- AnonymousExpression Extensible <|-- AnonymousExpression Annotatable <|-- AnonymousExpression CommonMetadata <|-- AnonymousExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos AnonymousExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos Inheritance AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ] AnonymousClassExpression [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousExpression native linkml:AnonymousExpression LinkML Source Direct name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing Induced name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing attributes: extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: AnonymousExpression"},{"location":"AnonymousExpression/#class-anonymousexpression","text":"NOTE : this is an abstract class and should not be instantiated directly URI: linkml:AnonymousExpression classDiagram class AnonymousExpression Expression <|-- AnonymousExpression Extensible <|-- AnonymousExpression Annotatable <|-- AnonymousExpression CommonMetadata <|-- AnonymousExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos AnonymousExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousClassExpression AnonymousExpression : aliases AnonymousExpression : alt_descriptions AnonymousExpression : annotations AnonymousExpression : broad_mappings AnonymousExpression : close_mappings AnonymousExpression : comments AnonymousExpression : deprecated AnonymousExpression : deprecated_element_has_exact_replacement AnonymousExpression : deprecated_element_has_possible_replacement AnonymousExpression : description AnonymousExpression : exact_mappings AnonymousExpression : examples AnonymousExpression : extensions AnonymousExpression : from_schema AnonymousExpression : imported_from AnonymousExpression : in_language AnonymousExpression : in_subset AnonymousExpression : mappings AnonymousExpression : narrow_mappings AnonymousExpression : notes AnonymousExpression : rank AnonymousExpression : related_mappings AnonymousExpression : see_also AnonymousExpression : source AnonymousExpression : structured_aliases AnonymousExpression : title AnonymousExpression : todos","title":"Class: AnonymousExpression"},{"location":"AnonymousExpression/#inheritance","text":"AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ] AnonymousClassExpression [ ClassExpression ]","title":"Inheritance"},{"location":"AnonymousExpression/#slots","text":"Name Cardinality and Range Description Inheritance extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"AnonymousExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousExpression native linkml:AnonymousExpression","title":"Mappings"},{"location":"AnonymousExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousExpression/#direct","text":"name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing","title":"Direct"},{"location":"AnonymousExpression/#induced","text":"name: anonymous_expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixins: - expression - extensible - annotatable - common_metadata status: testing attributes: extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"AnonymousSlotExpression/","text":"Class: AnonymousSlotExpression URI: linkml:AnonymousSlotExpression classDiagram class AnonymousSlotExpression SlotExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousSlotExpression AnonymousSlotExpression : aliases AnonymousSlotExpression : all_members AnonymousSlotExpression : all_of AnonymousSlotExpression : alt_descriptions AnonymousSlotExpression : annotations AnonymousSlotExpression : any_of AnonymousSlotExpression : broad_mappings AnonymousSlotExpression : close_mappings AnonymousSlotExpression : comments AnonymousSlotExpression : deprecated AnonymousSlotExpression : deprecated_element_has_exact_replacement AnonymousSlotExpression : deprecated_element_has_possible_replacement AnonymousSlotExpression : description AnonymousSlotExpression : enum_range AnonymousSlotExpression : equals_expression AnonymousSlotExpression : equals_number AnonymousSlotExpression : equals_string AnonymousSlotExpression : equals_string_in AnonymousSlotExpression : exact_mappings AnonymousSlotExpression : exactly_one_of AnonymousSlotExpression : examples AnonymousSlotExpression : extensions AnonymousSlotExpression : from_schema AnonymousSlotExpression : has_member AnonymousSlotExpression : implicit_prefix AnonymousSlotExpression : imported_from AnonymousSlotExpression : in_language AnonymousSlotExpression : in_subset AnonymousSlotExpression : inlined AnonymousSlotExpression : inlined_as_list AnonymousSlotExpression : mappings AnonymousSlotExpression : maximum_cardinality AnonymousSlotExpression : maximum_value AnonymousSlotExpression : minimum_cardinality AnonymousSlotExpression : minimum_value AnonymousSlotExpression : narrow_mappings AnonymousSlotExpression : none_of AnonymousSlotExpression : notes AnonymousSlotExpression : pattern AnonymousSlotExpression : range AnonymousSlotExpression : range_expression AnonymousSlotExpression : rank AnonymousSlotExpression : recommended AnonymousSlotExpression : related_mappings AnonymousSlotExpression : required AnonymousSlotExpression : see_also AnonymousSlotExpression : source AnonymousSlotExpression : structured_aliases AnonymousSlotExpression : structured_pattern AnonymousSlotExpression : title AnonymousSlotExpression : todos AnonymousSlotExpression : unit AnonymousSlotExpression : value_presence Inheritance AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ] Slots Name Cardinality and Range Description Inheritance range 0..1 Element defines the type of the object of the slot SlotExpression range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression none_of 0..* AnonymousSlotExpression holds if none of the expressions hold SlotExpression exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold SlotExpression any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold SlotExpression all_of 0..* AnonymousSlotExpression holds if all of the expressions hold SlotExpression extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used SlotExpression has_member range AnonymousSlotExpression SlotExpression all_members range AnonymousSlotExpression SlotExpression none_of range AnonymousSlotExpression SlotExpression exactly_one_of range AnonymousSlotExpression SlotExpression any_of range AnonymousSlotExpression SlotExpression all_of range AnonymousSlotExpression AnonymousSlotExpression has_member range AnonymousSlotExpression AnonymousSlotExpression all_members range AnonymousSlotExpression AnonymousSlotExpression none_of range AnonymousSlotExpression AnonymousSlotExpression exactly_one_of range AnonymousSlotExpression AnonymousSlotExpression any_of range AnonymousSlotExpression AnonymousSlotExpression all_of range AnonymousSlotExpression SlotDefinition has_member range AnonymousSlotExpression SlotDefinition all_members range AnonymousSlotExpression SlotDefinition none_of range AnonymousSlotExpression SlotDefinition exactly_one_of range AnonymousSlotExpression SlotDefinition any_of range AnonymousSlotExpression SlotDefinition all_of range AnonymousSlotExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousSlotExpression native linkml:AnonymousSlotExpression LinkML Source Direct name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing Induced name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: anonymous_slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: anonymous_slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: anonymous_slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: anonymous_slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: anonymous_slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: anonymous_slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: anonymous_slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_slot_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_slot_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_slot_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_slot_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_slot_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_slot_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_slot_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_slot_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_slot_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_slot_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_slot_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_slot_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_slot_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_slot_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_slot_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_slot_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_slot_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_slot_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: AnonymousSlotExpression"},{"location":"AnonymousSlotExpression/#class-anonymousslotexpression","text":"URI: linkml:AnonymousSlotExpression classDiagram class AnonymousSlotExpression SlotExpression <|-- AnonymousSlotExpression AnonymousExpression <|-- AnonymousSlotExpression AnonymousSlotExpression : aliases AnonymousSlotExpression : all_members AnonymousSlotExpression : all_of AnonymousSlotExpression : alt_descriptions AnonymousSlotExpression : annotations AnonymousSlotExpression : any_of AnonymousSlotExpression : broad_mappings AnonymousSlotExpression : close_mappings AnonymousSlotExpression : comments AnonymousSlotExpression : deprecated AnonymousSlotExpression : deprecated_element_has_exact_replacement AnonymousSlotExpression : deprecated_element_has_possible_replacement AnonymousSlotExpression : description AnonymousSlotExpression : enum_range AnonymousSlotExpression : equals_expression AnonymousSlotExpression : equals_number AnonymousSlotExpression : equals_string AnonymousSlotExpression : equals_string_in AnonymousSlotExpression : exact_mappings AnonymousSlotExpression : exactly_one_of AnonymousSlotExpression : examples AnonymousSlotExpression : extensions AnonymousSlotExpression : from_schema AnonymousSlotExpression : has_member AnonymousSlotExpression : implicit_prefix AnonymousSlotExpression : imported_from AnonymousSlotExpression : in_language AnonymousSlotExpression : in_subset AnonymousSlotExpression : inlined AnonymousSlotExpression : inlined_as_list AnonymousSlotExpression : mappings AnonymousSlotExpression : maximum_cardinality AnonymousSlotExpression : maximum_value AnonymousSlotExpression : minimum_cardinality AnonymousSlotExpression : minimum_value AnonymousSlotExpression : narrow_mappings AnonymousSlotExpression : none_of AnonymousSlotExpression : notes AnonymousSlotExpression : pattern AnonymousSlotExpression : range AnonymousSlotExpression : range_expression AnonymousSlotExpression : rank AnonymousSlotExpression : recommended AnonymousSlotExpression : related_mappings AnonymousSlotExpression : required AnonymousSlotExpression : see_also AnonymousSlotExpression : source AnonymousSlotExpression : structured_aliases AnonymousSlotExpression : structured_pattern AnonymousSlotExpression : title AnonymousSlotExpression : todos AnonymousSlotExpression : unit AnonymousSlotExpression : value_presence","title":"Class: AnonymousSlotExpression"},{"location":"AnonymousSlotExpression/#inheritance","text":"AnonymousExpression [ Expression Extensible Annotatable CommonMetadata ] AnonymousSlotExpression [ SlotExpression ]","title":"Inheritance"},{"location":"AnonymousSlotExpression/#slots","text":"Name Cardinality and Range Description Inheritance range 0..1 Element defines the type of the object of the slot SlotExpression range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression none_of 0..* AnonymousSlotExpression holds if none of the expressions hold SlotExpression exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold SlotExpression any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold SlotExpression all_of 0..* AnonymousSlotExpression holds if all of the expressions hold SlotExpression extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"AnonymousSlotExpression/#usages","text":"used by used in type used SlotExpression has_member range AnonymousSlotExpression SlotExpression all_members range AnonymousSlotExpression SlotExpression none_of range AnonymousSlotExpression SlotExpression exactly_one_of range AnonymousSlotExpression SlotExpression any_of range AnonymousSlotExpression SlotExpression all_of range AnonymousSlotExpression AnonymousSlotExpression has_member range AnonymousSlotExpression AnonymousSlotExpression all_members range AnonymousSlotExpression AnonymousSlotExpression none_of range AnonymousSlotExpression AnonymousSlotExpression exactly_one_of range AnonymousSlotExpression AnonymousSlotExpression any_of range AnonymousSlotExpression AnonymousSlotExpression all_of range AnonymousSlotExpression SlotDefinition has_member range AnonymousSlotExpression SlotDefinition all_members range AnonymousSlotExpression SlotDefinition none_of range AnonymousSlotExpression SlotDefinition exactly_one_of range AnonymousSlotExpression SlotDefinition any_of range AnonymousSlotExpression SlotDefinition all_of range AnonymousSlotExpression","title":"Usages"},{"location":"AnonymousSlotExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousSlotExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousSlotExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousSlotExpression native linkml:AnonymousSlotExpression","title":"Mappings"},{"location":"AnonymousSlotExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousSlotExpression/#direct","text":"name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing","title":"Direct"},{"location":"AnonymousSlotExpression/#induced","text":"name: anonymous_slot_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: anonymous_expression mixins: - slot_expression status: testing attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: anonymous_slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: anonymous_slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: anonymous_slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: anonymous_slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: anonymous_slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: anonymous_slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: anonymous_slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: anonymous_slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: anonymous_slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: anonymous_slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: anonymous_slot_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: anonymous_slot_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: anonymous_slot_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: anonymous_slot_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: anonymous_slot_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: anonymous_slot_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: anonymous_slot_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: anonymous_slot_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: anonymous_slot_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: anonymous_slot_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: anonymous_slot_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: anonymous_slot_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: anonymous_slot_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: anonymous_slot_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: anonymous_slot_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: anonymous_slot_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: anonymous_slot_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: anonymous_slot_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: anonymous_slot_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"AnonymousTypeExpression/","text":"Class: AnonymousTypeExpression URI: linkml:AnonymousTypeExpression classDiagram class AnonymousTypeExpression TypeExpression <|-- AnonymousTypeExpression AnonymousTypeExpression : all_of AnonymousTypeExpression : any_of AnonymousTypeExpression : equals_number AnonymousTypeExpression : equals_string AnonymousTypeExpression : equals_string_in AnonymousTypeExpression : exactly_one_of AnonymousTypeExpression : implicit_prefix AnonymousTypeExpression : maximum_value AnonymousTypeExpression : minimum_value AnonymousTypeExpression : none_of AnonymousTypeExpression : pattern AnonymousTypeExpression : structured_pattern AnonymousTypeExpression : unit Inheritance AnonymousTypeExpression [ TypeExpression ] Slots Name Cardinality and Range Description Inheritance pattern 0..1 String the string value of the slot must conform to this regular expression expresse... TypeExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression none_of 0..* AnonymousTypeExpression holds if none of the expressions hold TypeExpression exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold TypeExpression any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold TypeExpression all_of 0..* AnonymousTypeExpression holds if all of the expressions hold TypeExpression Usages used by used in type used TypeExpression none_of range AnonymousTypeExpression TypeExpression exactly_one_of range AnonymousTypeExpression TypeExpression any_of range AnonymousTypeExpression TypeExpression all_of range AnonymousTypeExpression AnonymousTypeExpression none_of range AnonymousTypeExpression AnonymousTypeExpression exactly_one_of range AnonymousTypeExpression AnonymousTypeExpression any_of range AnonymousTypeExpression AnonymousTypeExpression all_of range AnonymousTypeExpression TypeDefinition none_of range AnonymousTypeExpression TypeDefinition exactly_one_of range AnonymousTypeExpression TypeDefinition any_of range AnonymousTypeExpression TypeDefinition all_of range AnonymousTypeExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:AnonymousTypeExpression native linkml:AnonymousTypeExpression LinkML Source Direct name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression Induced name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_type_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - 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TypeExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression none_of 0..* AnonymousTypeExpression holds if none of the expressions hold TypeExpression exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold TypeExpression any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold TypeExpression all_of 0..* AnonymousTypeExpression holds if all of the expressions hold TypeExpression","title":"Slots"},{"location":"AnonymousTypeExpression/#usages","text":"used by used in type used TypeExpression none_of range AnonymousTypeExpression TypeExpression exactly_one_of range AnonymousTypeExpression TypeExpression any_of range AnonymousTypeExpression TypeExpression all_of range AnonymousTypeExpression AnonymousTypeExpression none_of range AnonymousTypeExpression AnonymousTypeExpression exactly_one_of range AnonymousTypeExpression AnonymousTypeExpression any_of range AnonymousTypeExpression AnonymousTypeExpression all_of range AnonymousTypeExpression TypeDefinition none_of range AnonymousTypeExpression TypeDefinition exactly_one_of range AnonymousTypeExpression TypeDefinition any_of range AnonymousTypeExpression TypeDefinition all_of range AnonymousTypeExpression","title":"Usages"},{"location":"AnonymousTypeExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"AnonymousTypeExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"AnonymousTypeExpression/#mappings","text":"Mapping Type Mapped Value self linkml:AnonymousTypeExpression native linkml:AnonymousTypeExpression","title":"Mappings"},{"location":"AnonymousTypeExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"AnonymousTypeExpression/#direct","text":"name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression","title":"Direct"},{"location":"AnonymousTypeExpression/#induced","text":"name: anonymous_type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: anonymous_type_expression domain_of: - 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SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: anonymous_type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: anonymous_type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Induced"},{"location":"Basic/","text":"Basic An extension of minimal that is a basic subset that can be implemented by a broad variety of tools URI: Basic Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta","title":"Basic"},{"location":"Basic/#basic","text":"An extension of minimal that is a basic subset that can be implemented by a broad variety of tools URI: Basic","title":"Basic"},{"location":"Basic/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Basic/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"BasicSubset/","text":"Subset: BasicSubset _An extension of MinimalSubset that avoids advanced constructs and can be implemented by a broad variety of tools. This subset roughly corresponds to the union of most standard constructs used in relational datamodel modeling, object oriented modeling, and simple JSON-style modeling, while avoiding more advanced constructs from these languages. It is often possible to translate from a more expressive schema to a BasicSubset schema, through a schema derivation process_ URI: BasicSubset Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class CommonMetadata Generic metadata shared across definitions Element a named element in the model Definition abstract base class for core metaclasses Example usage example and description AltDescription an attributed description SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema title 0..1 String the official title of the element slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema description 0..1 recommended String a description of the element's purpose and use types 0..* TypeDefinition An index to the collection of all type definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... imports 0..* Uriorcurie other schemas that are included in this schema license 0..1 String license for the schema rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... version 0..1 String particular version of schema default_curi_maps 0..* String ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version 0..1 String Version of the metamodel used to load the schema source_file 0..1 String name, uri or description of the source of the schema source_file_date 0..1 Datetime modification date of the source of the schema source_file_size 0..1 Integer size in bytes of the source of the schema generation_date 0..1 Datetime date and time that the schema was loaded/generated categories 0..* Uriorcurie controlled terms used to categorize an element keywords 0..* String Keywords or tags used to describe the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element ClassDefinition an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 Boolean indicator that this is the root class in tree structures rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_keys 0..* UniqueKey A collection of unique keys for this class abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element SlotDefinition an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application title 0..1 String the official title of the element identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container description 0..1 recommended String a description of the element's purpose and use multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... singular_name 0..1 String a name that is used in the singular form key 0..1 Boolean True means that the key slot(s) uniquely identify the container slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 Boolean true if this slot is a grouping slot range 0..1 Element defines the type of the object of the slot minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element TypeDefinition an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use typeof 0..1 TypeDefinition Names a parent type base 0..1 String python base type that implements this type definition repr 0..1 String the name of the python object that implements this type definition pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element EnumDefinition an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set code_set_tag 0..1 String the version tag of the enumeration code set code_set_version 0..1 String the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element SubsetDefinition an element that can be used to group other metamodel elements Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element Prefix prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) prefix_reference 1..1 Uri A URI associated with a given prefix PermissibleValue a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use text 1..1 String identifier meaning 0..1 Uriorcurie the value meaning of a permissible value rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element UniqueKey a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element CommonMetadata Generic metadata shared across definitions Name Cardinality and Range Description title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element Element a named element in the model Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption comments 0..* String notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... source 0..1 Uriorcurie A related resource from which the element is derived see_also 0..* Uriorcurie a reference aliases 0..* String Alaternate names for the element Definition abstract base class for core metaclasses Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier title 0..1 String the official title of the element description 0..1 recommended String a description of the element's purpose and use is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String Outstanding issue that needs resolution notes 0..* String editorial notes about an element intended for internal consumption 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structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots license license for the schema tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external 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maximum_value for slots with ranges of type number, the value must be equal to or lowe than... alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot Enumerations in subset Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"BasicSubset"},{"location":"BasicSubset/#subset-basicsubset","text":"_An extension of MinimalSubset that avoids advanced constructs and can be implemented by a broad variety of tools. This subset roughly corresponds to the union of most standard constructs used in relational datamodel modeling, object oriented modeling, and simple JSON-style modeling, while avoiding more advanced constructs from these languages. It is often possible to translate from a more expressive schema to a BasicSubset schema, through a schema derivation process_ URI: BasicSubset","title":"Subset: BasicSubset"},{"location":"BasicSubset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"BasicSubset/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"BasicSubset/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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aliases 0..* String Alaternate names for the element","title":"ClassDefinition"},{"location":"BasicSubset/#slotdefinition","text":"an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application title 0..1 String the official title of the element identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container description 0..1 recommended String a description of the element's purpose and use multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated 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higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... created_by 0..1 Uriorcurie agent that created the element created_on 0..1 Datetime time at which the element was created last_updated_on 0..1 Datetime time at which the element was last updated modified_by 0..1 Uriorcurie agent that modified the element status 0..1 Uriorcurie status of the element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... conforms_to 0..1 String An established standard to which the element conforms alt_descriptions 0..* AltDescription A sourced alternative description for an element deprecated 0..1 String Description of why and when this element will no longer be used todos 0..* String 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String a description of the element's purpose and use is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set code_set_tag 0..1 String the version tag of the enumeration code set code_set_version 0..1 String the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean 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slot is represented as a list of range instances attributes Inline definition of slots license license for the schema tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... conforms_to An established standard to which the element conforms categories controlled terms used to categorize an element keywords Keywords or tags used to describe the element id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... aliases Alaternate names for the element deprecated Description of why and when this element will no longer be used todos Outstanding issue that needs resolution notes editorial notes about an element intended for internal consumption comments notes and comments about an element intended for external consumption in_subset used to indicate membership of a term in a defined subset of terms used for a... see_also a reference owned_by agent that owns or is the steward of the element created_by agent that created the element created_on time at which the element was created last_updated_on time at which the element was last updated modified_by agent that modified the element status status of the element source A related resource from which the element is derived publisher An entity responsible for making the resource available abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... code_set the identifier of an enumeration code set code_set_version the version identifier of the enumeration code set code_set_tag the version tag of the enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... version particular version of schema default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... metamodel_version Version of the metamodel used to load the schema source_file name, uri or description of the source of the schema source_file_date modification date of the source of the schema source_file_size size in bytes of the source of the schema generation_date date and time that the schema was loaded/generated unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key range defines the type of the object of the slot singular_name a name that is used in the singular form key True means that the key slot(s) uniquely identify the container minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... alt_description_text text of an attributed description alt_description_source the source of an attributed description alt_descriptions A sourced alternative description for an element value example value value_description description of what the value is doing examples example usages of an element slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot","title":"Slots in subset"},{"location":"BasicSubset/#enumerations-in-subset","text":"Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"Enumerations in subset"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"ClassDefinition/","text":"Class: ClassDefinition an element whose instances are complex objects that may have slot-value assignments URI: linkml:ClassDefinition classDiagram class ClassDefinition ClassExpression <|-- ClassDefinition Definition <|-- ClassDefinition ClassDefinition : abstract ClassDefinition : aliases ClassDefinition : all_of ClassDefinition : alt_descriptions ClassDefinition : annotations ClassDefinition : any_of ClassDefinition : apply_to ClassDefinition : attributes ClassDefinition : broad_mappings ClassDefinition : children_are_mutually_disjoint ClassDefinition : class_uri ClassDefinition : classification_rules ClassDefinition : close_mappings ClassDefinition : comments ClassDefinition : conforms_to ClassDefinition : created_by ClassDefinition : created_on ClassDefinition : defining_slots ClassDefinition : definition_uri ClassDefinition : deprecated ClassDefinition : deprecated_element_has_exact_replacement ClassDefinition : deprecated_element_has_possible_replacement ClassDefinition : description ClassDefinition : disjoint_with ClassDefinition : exact_mappings ClassDefinition : exactly_one_of ClassDefinition : examples ClassDefinition : extensions ClassDefinition : from_schema ClassDefinition : id_prefixes ClassDefinition : imported_from ClassDefinition : in_language ClassDefinition : in_subset ClassDefinition : is_a ClassDefinition : last_updated_on ClassDefinition : local_names ClassDefinition : mappings ClassDefinition : mixin ClassDefinition : mixins ClassDefinition : modified_by ClassDefinition : name ClassDefinition : narrow_mappings ClassDefinition : none_of ClassDefinition : notes ClassDefinition : rank ClassDefinition : related_mappings ClassDefinition : represents_relationship ClassDefinition : rules ClassDefinition : see_also ClassDefinition : slot_conditions ClassDefinition : slot_names_unique ClassDefinition : slot_usage ClassDefinition : slots ClassDefinition : source ClassDefinition : status ClassDefinition : string_serialization ClassDefinition : structured_aliases ClassDefinition : subclass_of ClassDefinition : title ClassDefinition : todos ClassDefinition : tree_root ClassDefinition : union_of ClassDefinition : unique_keys ClassDefinition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition ClassDefinition [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance slots 0..* SlotDefinition collection of slot names that are applicable to a class direct slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition direct attributes 0..* SlotDefinition Inline definition of slots direct class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... direct subclass_of 0..1 Uriorcurie rdfs:subClassOf to be emitted in OWL generation direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct defining_slots 0..* SlotDefinition The combination of is a plus defining slots form a genus-differentia definiti... direct tree_root 0..1 Boolean indicator that this is the root class in tree structures direct unique_keys 0..* UniqueKey A collection of unique keys for this class direct rules 0..* ClassRule the collection of rules that apply to all members of this class direct classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct represents_relationship 0..1 Boolean true if this class represents a relationship rather than an entity direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold ClassExpression exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold ClassExpression none_of 0..* AnonymousClassExpression holds if none of the expressions hold ClassExpression all_of 0..* AnonymousClassExpression holds if all of the expressions hold ClassExpression slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated Definition abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... Definition apply_to 0..* ClassDefinition Used to extend class or slot definitions Definition values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition created_by 0..1 Uriorcurie agent that created the element Definition created_on 0..1 Datetime time at which the element was created Definition last_updated_on 0..1 Datetime time at which the element was last updated Definition modified_by 0..1 Uriorcurie agent that modified the element Definition status 0..1 Uriorcurie status of the element Definition string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used SchemaDefinition classes range ClassDefinition SlotDefinition domain range ClassDefinition SlotDefinition domain_of range ClassDefinition ClassDefinition slots domain ClassDefinition ClassDefinition slot_usage domain ClassDefinition ClassDefinition attributes domain ClassDefinition ClassDefinition class_uri domain ClassDefinition ClassDefinition subclass_of domain ClassDefinition ClassDefinition union_of range ClassDefinition ClassDefinition defining_slots domain ClassDefinition ClassDefinition tree_root domain ClassDefinition ClassDefinition unique_keys domain ClassDefinition ClassDefinition rules domain ClassDefinition ClassDefinition classification_rules domain ClassDefinition ClassDefinition represents_relationship domain ClassDefinition ClassDefinition disjoint_with range ClassDefinition ClassDefinition is_a range ClassDefinition ClassDefinition mixins range ClassDefinition ClassDefinition apply_to range ClassDefinition Aliases table record template message observation Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassDefinition native linkml:ClassDefinition close owl:Class LinkML Source Direct name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slots: - slots - slot_usage - attributes - class_uri - subclass_of - union_of - defining_slots - tree_root - unique_keys - rules - classification_rules - slot_names_unique - represents_relationship - disjoint_with - children_are_mutually_disjoint slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition Induced name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition attributes: slots: name: slots description: collection of slot names that are applicable to a class comments: - This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally, in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 19 domain: class_definition multivalued: true alias: slots owner: class_definition domain_of: - class_definition range: slot_definition slot_usage: name: slot_usage description: the refinement of a slot in the context of the containing class definition. comments: - Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 23 domain: class_definition multivalued: true alias: slot_usage owner: class_definition domain_of: - class_definition range: slot_definition inlined: true attributes: name: attributes description: Inline definition of slots comments: - attributes are an alternative way of defining new slots. An attribute adds a slot to the global space in the form <class_name>__<slot_name> (lower case, double underscores). Attributes can be specialized via slot_usage. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 29 domain: class_definition multivalued: true alias: attributes owner: class_definition domain_of: - class_definition range: slot_definition inlined: true class_uri: name: class_uri description: URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: class_definition ifabsent: class_curie alias: class_uri owner: class_definition domain_of: - class_definition range: uriorcurie subclass_of: name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of owner: class_definition domain_of: - class_definition range: uriorcurie union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: class_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition defining_slots: name: defining_slots description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true inherited: true alias: defining_slots owner: class_definition domain_of: - class_definition range: slot_definition tree_root: name: tree_root description: indicator that this is the root class in tree structures notes: - each schema should have at most one tree root in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: class_definition alias: tree_root owner: class_definition domain_of: - class_definition range: boolean unique_keys: name: unique_keys description: A collection of unique keys for this class. Unique keys may be singular or compound. in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta exact_mappings: - owl:hasKey rank: 1000 domain: class_definition multivalued: true alias: unique_keys owner: class_definition domain_of: - class_definition range: unique_key inlined: true rules: name: rules description: the collection of rules that apply to all members of this class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: sh:rule multivalued: true alias: rules owner: class_definition domain_of: - class_definition - class_definition range: class_rule inlined: true classification_rules: name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules owner: class_definition domain_of: - class_definition range: anonymous_class_expression inlined: true slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: class_definition domain_of: - schema_definition - class_definition range: boolean represents_relationship: name: represents_relationship description: true if this class represents a relationship rather than an entity comments: - in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond - in the context of RDF, this should be used when instances of the class are `rdf:Statement`s - in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes from_schema: https://w3id.org/linkml/meta see_also: - rdf:Statement - https://patterns.dataincubator.org/book/qualified-relation.html aliases: - is_reified rank: 1000 status: testing domain: class_definition inherited: true alias: represents_relationship owner: class_definition domain_of: - class_definition range: boolean disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: class_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: class_definition domain_of: - slot_definition - class_definition range: boolean any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_definition domain_of: - class_expression range: slot_definition inlined: true is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: class_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: class_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: class_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: class_definition domain_of: - definition - definition range: class_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: class_definition domain_of: - definition - definition range: class_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: class_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: class_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: class_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: class_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: class_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: class_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: class_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: class_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: class_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: class_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: class_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: class_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: ClassDefinition"},{"location":"ClassDefinition/#class-classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments URI: linkml:ClassDefinition classDiagram class ClassDefinition ClassExpression <|-- ClassDefinition Definition <|-- ClassDefinition ClassDefinition : abstract ClassDefinition : aliases ClassDefinition : all_of ClassDefinition : alt_descriptions ClassDefinition : annotations ClassDefinition : any_of ClassDefinition : apply_to ClassDefinition : attributes ClassDefinition : broad_mappings ClassDefinition : children_are_mutually_disjoint ClassDefinition : class_uri ClassDefinition : classification_rules ClassDefinition : close_mappings ClassDefinition : comments ClassDefinition : conforms_to ClassDefinition : created_by ClassDefinition : created_on ClassDefinition : defining_slots ClassDefinition : definition_uri ClassDefinition : deprecated ClassDefinition : deprecated_element_has_exact_replacement ClassDefinition : deprecated_element_has_possible_replacement ClassDefinition : description ClassDefinition : disjoint_with ClassDefinition : exact_mappings ClassDefinition : exactly_one_of ClassDefinition : examples ClassDefinition : extensions ClassDefinition : from_schema ClassDefinition : id_prefixes ClassDefinition : imported_from ClassDefinition : in_language ClassDefinition : in_subset ClassDefinition : is_a ClassDefinition : last_updated_on ClassDefinition : local_names ClassDefinition : mappings ClassDefinition : mixin ClassDefinition : mixins ClassDefinition : modified_by ClassDefinition : name ClassDefinition : narrow_mappings ClassDefinition : none_of ClassDefinition : notes ClassDefinition : rank ClassDefinition : related_mappings ClassDefinition : represents_relationship ClassDefinition : rules ClassDefinition : see_also ClassDefinition : slot_conditions ClassDefinition : slot_names_unique ClassDefinition : slot_usage ClassDefinition : slots ClassDefinition : source ClassDefinition : status ClassDefinition : string_serialization ClassDefinition : structured_aliases ClassDefinition : subclass_of ClassDefinition : title ClassDefinition : todos ClassDefinition : tree_root ClassDefinition : union_of ClassDefinition : unique_keys ClassDefinition : values_from","title":"Class: ClassDefinition"},{"location":"ClassDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition ClassDefinition [ ClassExpression ]","title":"Inheritance"},{"location":"ClassDefinition/#slots","text":"Name Cardinality and Range Description Inheritance slots 0..* SlotDefinition collection of slot names that are applicable to a class direct slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition direct attributes 0..* SlotDefinition Inline definition of slots direct class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... direct subclass_of 0..1 Uriorcurie rdfs:subClassOf to be emitted in OWL generation direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct defining_slots 0..* SlotDefinition The combination of is a plus defining slots form a genus-differentia definiti... direct tree_root 0..1 Boolean indicator that this is the root class in tree structures direct unique_keys 0..* UniqueKey A collection of unique keys for this class direct rules 0..* ClassRule the collection of rules that apply to all members of this class direct classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct represents_relationship 0..1 Boolean true if this class represents a relationship rather than an entity direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold ClassExpression exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold ClassExpression none_of 0..* AnonymousClassExpression holds if none of the expressions hold ClassExpression all_of 0..* AnonymousClassExpression holds if all of the expressions hold ClassExpression slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression ClassExpression is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated Definition abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... Definition apply_to 0..* ClassDefinition Used to extend class or slot definitions Definition values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition created_by 0..1 Uriorcurie agent that created the element Definition created_on 0..1 Datetime time at which the element was created Definition last_updated_on 0..1 Datetime time at which the element was last updated Definition modified_by 0..1 Uriorcurie agent that modified the element Definition status 0..1 Uriorcurie status of the element Definition string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"ClassDefinition/#usages","text":"used by used in type used SchemaDefinition classes range ClassDefinition SlotDefinition domain range ClassDefinition SlotDefinition domain_of range ClassDefinition ClassDefinition slots domain ClassDefinition ClassDefinition slot_usage domain ClassDefinition ClassDefinition attributes domain ClassDefinition ClassDefinition class_uri domain ClassDefinition ClassDefinition subclass_of domain ClassDefinition ClassDefinition union_of range ClassDefinition ClassDefinition defining_slots domain ClassDefinition ClassDefinition tree_root domain ClassDefinition ClassDefinition unique_keys domain ClassDefinition ClassDefinition rules domain ClassDefinition ClassDefinition classification_rules domain ClassDefinition ClassDefinition represents_relationship domain ClassDefinition ClassDefinition disjoint_with range ClassDefinition ClassDefinition is_a range ClassDefinition ClassDefinition mixins range ClassDefinition ClassDefinition apply_to range ClassDefinition","title":"Usages"},{"location":"ClassDefinition/#aliases","text":"table record template message observation","title":"Aliases"},{"location":"ClassDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:ClassDefinition native linkml:ClassDefinition close owl:Class","title":"Mappings"},{"location":"ClassDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassDefinition/#direct","text":"name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slots: - slots - slot_usage - attributes - class_uri - subclass_of - union_of - defining_slots - tree_root - unique_keys - rules - classification_rules - slot_names_unique - represents_relationship - disjoint_with - children_are_mutually_disjoint slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition","title":"Direct"},{"location":"ClassDefinition/#induced","text":"name: class_definition description: an element whose instances are complex objects that may have slot-value assignments in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - table - record - template - message - observation close_mappings: - owl:Class rank: 2 is_a: definition mixins: - class_expression slot_usage: is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: class_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: class_definition rules: name: rules domain_of: - class_definition - class_definition range: class_rule disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition attributes: slots: name: slots description: collection of slot names that are applicable to a class comments: - This defines the set of slots that are allowed to be used for a given class. The final list of slots for a class is the combination of the parent (is a) slots, mixins slots, apply to slots minus the slot usage entries. Formally, in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 19 domain: class_definition multivalued: true alias: slots owner: class_definition domain_of: - class_definition range: slot_definition slot_usage: name: slot_usage description: the refinement of a slot in the context of the containing class definition. comments: - Many slots may be re-used across different classes, but the meaning of the slot may be refined by context. For example, a generic association model may use slots subject/predicate/object with generic semantics and minimal constraints. When this is subclasses, e.g. to disease-phenotype associations then slot usage may specify both local naming (e.g. subject=disease) and local constraints in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 23 domain: class_definition multivalued: true alias: slot_usage owner: class_definition domain_of: - class_definition range: slot_definition inlined: true attributes: name: attributes description: Inline definition of slots comments: - attributes are an alternative way of defining new slots. An attribute adds a slot to the global space in the form <class_name>__<slot_name> (lower case, double underscores). Attributes can be specialized via slot_usage. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 29 domain: class_definition multivalued: true alias: attributes owner: class_definition domain_of: - class_definition range: slot_definition inlined: true class_uri: name: class_uri description: URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: class_definition ifabsent: class_curie alias: class_uri owner: class_definition domain_of: - class_definition range: uriorcurie subclass_of: name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of owner: class_definition domain_of: - class_definition range: uriorcurie union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: class_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: class_definition defining_slots: name: defining_slots description: The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true inherited: true alias: defining_slots owner: class_definition domain_of: - class_definition range: slot_definition tree_root: name: tree_root description: indicator that this is the root class in tree structures notes: - each schema should have at most one tree root in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: class_definition alias: tree_root owner: class_definition domain_of: - class_definition range: boolean unique_keys: name: unique_keys description: A collection of unique keys for this class. Unique keys may be singular or compound. in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta exact_mappings: - owl:hasKey rank: 1000 domain: class_definition multivalued: true alias: unique_keys owner: class_definition domain_of: - class_definition range: unique_key inlined: true rules: name: rules description: the collection of rules that apply to all members of this class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: sh:rule multivalued: true alias: rules owner: class_definition domain_of: - class_definition - class_definition range: class_rule inlined: true classification_rules: name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules owner: class_definition domain_of: - class_definition range: anonymous_class_expression inlined: true slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: class_definition domain_of: - schema_definition - class_definition range: boolean represents_relationship: name: represents_relationship description: true if this class represents a relationship rather than an entity comments: - in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond - in the context of RDF, this should be used when instances of the class are `rdf:Statement`s - in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes from_schema: https://w3id.org/linkml/meta see_also: - rdf:Statement - https://patterns.dataincubator.org/book/qualified-relation.html aliases: - is_reified rank: 1000 status: testing domain: class_definition inherited: true alias: represents_relationship owner: class_definition domain_of: - class_definition range: boolean disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: class_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: class_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: class_definition domain_of: - slot_definition - class_definition range: boolean any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_definition domain_of: - class_expression range: slot_definition inlined: true is_a: name: is_a description: A primary parent class from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: class_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: class_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: class_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: class_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin classes from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: class_definition domain_of: - definition - definition range: class_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: class_definition domain_of: - definition - definition range: class_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: class_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: class_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: class_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: class_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: class_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: class_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: class_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: class_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: class_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: class_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: class_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: class_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"ClassExpression/","text":"Class: ClassExpression A boolean expression that can be used to dynamically determine membership of a class URI: linkml:ClassExpression classDiagram class ClassExpression ClassExpression <|-- AnonymousClassExpression ClassExpression <|-- ClassDefinition ClassExpression : all_of ClassExpression : any_of ClassExpression : exactly_one_of ClassExpression : none_of ClassExpression : slot_conditions Slots Name Cardinality and Range Description Inheritance any_of 0..* Expression holds if at least one of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct none_of 0..* Expression holds if none of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression direct Mixin Usage mixed into description AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... Usages used by used in type used ClassExpression slot_conditions domain ClassExpression AnonymousClassExpression slot_conditions domain ClassExpression ClassDefinition slot_conditions domain ClassExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassExpression native linkml:ClassExpression LinkML Source Direct name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slots: - any_of - exactly_one_of - none_of - all_of - slot_conditions slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression Induced name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression attributes: any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_expression domain_of: - class_expression range: slot_definition inlined: true","title":"Class: ClassExpression"},{"location":"ClassExpression/#class-classexpression","text":"A boolean expression that can be used to dynamically determine membership of a class URI: linkml:ClassExpression classDiagram class ClassExpression ClassExpression <|-- AnonymousClassExpression ClassExpression <|-- ClassDefinition ClassExpression : all_of ClassExpression : any_of ClassExpression : exactly_one_of ClassExpression : none_of ClassExpression : slot_conditions","title":"Class: ClassExpression"},{"location":"ClassExpression/#slots","text":"Name Cardinality and Range Description Inheritance any_of 0..* Expression holds if at least one of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct none_of 0..* Expression holds if none of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression direct","title":"Slots"},{"location":"ClassExpression/#mixin-usage","text":"mixed into description AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Mixin Usage"},{"location":"ClassExpression/#usages","text":"used by used in type used ClassExpression slot_conditions domain ClassExpression AnonymousClassExpression slot_conditions domain ClassExpression ClassDefinition slot_conditions domain ClassExpression","title":"Usages"},{"location":"ClassExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassExpression/#mappings","text":"Mapping Type Mapped Value self linkml:ClassExpression native linkml:ClassExpression","title":"Mappings"},{"location":"ClassExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassExpression/#direct","text":"name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slots: - any_of - exactly_one_of - none_of - all_of - slot_conditions slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression","title":"Direct"},{"location":"ClassExpression/#induced","text":"name: class_expression description: A boolean expression that can be used to dynamically determine membership of a class from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression attributes: any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: class_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_class_expression slot_conditions: name: slot_conditions description: expresses constraints on a group of slots for a class expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_expression multivalued: true alias: slot_conditions owner: class_expression domain_of: - class_expression range: slot_definition inlined: true","title":"Induced"},{"location":"ClassLevelRule/","text":"Class: ClassLevelRule A rule that is applied to classes NOTE : this is an abstract class and should not be instantiated directly URI: linkml:ClassLevelRule classDiagram class ClassLevelRule ClassLevelRule <|-- ClassRule Inheritance ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassLevelRule native linkml:ClassLevelRule LinkML Source Direct name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing Induced name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing","title":"Class: ClassLevelRule"},{"location":"ClassLevelRule/#class-classlevelrule","text":"A rule that is applied to classes NOTE : this is an abstract class and should not be instantiated directly URI: linkml:ClassLevelRule classDiagram class ClassLevelRule ClassLevelRule <|-- ClassRule","title":"Class: ClassLevelRule"},{"location":"ClassLevelRule/#inheritance","text":"ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"ClassLevelRule/#slots","text":"Name Cardinality and Range Description Inheritance","title":"Slots"},{"location":"ClassLevelRule/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassLevelRule/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassLevelRule/#mappings","text":"Mapping Type Mapped Value self linkml:ClassLevelRule native linkml:ClassLevelRule","title":"Mappings"},{"location":"ClassLevelRule/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassLevelRule/#direct","text":"name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing","title":"Direct"},{"location":"ClassLevelRule/#induced","text":"name: class_level_rule description: A rule that is applied to classes from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing","title":"Induced"},{"location":"ClassRule/","text":"Class: ClassRule A rule that applies to instances of a class URI: linkml:ClassRule classDiagram class ClassRule Extensible <|-- ClassRule Annotatable <|-- ClassRule CommonMetadata <|-- ClassRule ClassLevelRule <|-- ClassRule ClassRule : aliases ClassRule : alt_descriptions ClassRule : annotations ClassRule : bidirectional ClassRule : broad_mappings ClassRule : close_mappings ClassRule : comments ClassRule : deactivated ClassRule : deprecated ClassRule : deprecated_element_has_exact_replacement ClassRule : deprecated_element_has_possible_replacement ClassRule : description ClassRule : elseconditions ClassRule : exact_mappings ClassRule : examples ClassRule : extensions ClassRule : from_schema ClassRule : imported_from ClassRule : in_language ClassRule : in_subset ClassRule : mappings ClassRule : narrow_mappings ClassRule : notes ClassRule : open_world ClassRule : postconditions ClassRule : preconditions ClassRule : rank ClassRule : related_mappings ClassRule : see_also ClassRule : source ClassRule : structured_aliases ClassRule : title ClassRule : todos Inheritance ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... direct postconditions 0..1 AnonymousClassExpression an expression 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CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata Usages used by used in type used ClassDefinition rules range ClassRule Aliases if rule Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ClassRule native linkml:ClassRule close sh:TripleRule, swrl:Imp LinkML Source Direct name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing slots: - preconditions - postconditions - elseconditions - bidirectional - open_world - rank - deactivated Induced name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing attributes: preconditions: name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true postconditions: name: postconditions description: an expression that must hold for an instance of the class, if the preconditions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - then - head - consequents close_mappings: - swrl:body rank: 113 alias: postconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true elseconditions: name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true bidirectional: name: bidirectional description: in addition to preconditions entailing postconditions, the postconditions entail the preconditions in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - iff - if and only if rank: 1000 alias: bidirectional owner: class_rule domain_of: - class_rule range: boolean open_world: name: open_world description: if true, the the postconditions may be omitted in instance data, but it is valid for an inference engine to add these in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: open_world owner: class_rule domain_of: - class_rule range: boolean rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_rule domain_of: - common_metadata - class_rule range: integer deactivated: name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated owner: class_rule domain_of: - class_rule range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_rule domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_rule domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_rule domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_rule domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_rule domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_rule domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_rule domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_rule domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_rule domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_rule domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_rule domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_rule domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_rule domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_rule domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_rule domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_rule domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_rule domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_rule domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_rule domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie","title":"Class: ClassRule"},{"location":"ClassRule/#class-classrule","text":"A rule that applies to instances of a class URI: linkml:ClassRule classDiagram class ClassRule Extensible <|-- ClassRule Annotatable <|-- ClassRule CommonMetadata <|-- ClassRule ClassLevelRule <|-- ClassRule ClassRule : aliases ClassRule : alt_descriptions ClassRule : annotations ClassRule : bidirectional ClassRule : broad_mappings ClassRule : close_mappings ClassRule : comments ClassRule : deactivated ClassRule : deprecated ClassRule : deprecated_element_has_exact_replacement ClassRule : deprecated_element_has_possible_replacement ClassRule : description ClassRule : elseconditions ClassRule : exact_mappings ClassRule : examples ClassRule : extensions ClassRule : from_schema ClassRule : imported_from ClassRule : in_language ClassRule : in_subset ClassRule : mappings ClassRule : narrow_mappings ClassRule : notes ClassRule : open_world ClassRule : postconditions ClassRule : preconditions ClassRule : rank ClassRule : related_mappings ClassRule : see_also ClassRule : source ClassRule : structured_aliases ClassRule : title ClassRule : todos","title":"Class: ClassRule"},{"location":"ClassRule/#inheritance","text":"ClassLevelRule ClassRule [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"ClassRule/#slots","text":"Name Cardinality and Range Description Inheritance preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... direct postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... direct elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... direct bidirectional 0..1 Boolean in addition to preconditions entailing postconditions, the postconditions ent... direct open_world 0..1 Boolean if true, the the postconditions may be omitted in instance data, but it is va... direct rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... direct deactivated 0..1 Boolean a deactivated rule is not executed by the rules engine direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata","title":"Slots"},{"location":"ClassRule/#usages","text":"used by used in type used ClassDefinition rules range ClassRule","title":"Usages"},{"location":"ClassRule/#aliases","text":"if rule","title":"Aliases"},{"location":"ClassRule/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ClassRule/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ClassRule/#mappings","text":"Mapping Type Mapped Value self linkml:ClassRule native linkml:ClassRule close sh:TripleRule, swrl:Imp","title":"Mappings"},{"location":"ClassRule/#linkml-source","text":"","title":"LinkML Source"},{"location":"ClassRule/#direct","text":"name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing slots: - preconditions - postconditions - elseconditions - bidirectional - open_world - rank - deactivated","title":"Direct"},{"location":"ClassRule/#induced","text":"name: class_rule description: A rule that applies to instances of a class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if rule close_mappings: - sh:TripleRule - swrl:Imp rank: 1000 is_a: class_level_rule mixins: - extensible - annotatable - common_metadata status: testing attributes: preconditions: name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true postconditions: name: postconditions description: an expression that must hold for an instance of the class, if the preconditions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - then - head - consequents close_mappings: - swrl:body rank: 113 alias: postconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true elseconditions: name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions owner: class_rule domain_of: - class_rule range: anonymous_class_expression inlined: true bidirectional: name: bidirectional description: in addition to preconditions entailing postconditions, the postconditions entail the preconditions in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - iff - if and only if rank: 1000 alias: bidirectional owner: class_rule domain_of: - class_rule range: boolean open_world: name: open_world description: if true, the the postconditions may be omitted in instance data, but it is valid for an inference engine to add these in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: open_world owner: class_rule domain_of: - class_rule range: boolean rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: class_rule domain_of: - common_metadata - class_rule range: integer deactivated: name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated owner: class_rule domain_of: - class_rule range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: class_rule domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: class_rule domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: class_rule domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: class_rule domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: class_rule domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: class_rule domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: class_rule domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: class_rule domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: class_rule domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: class_rule domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: class_rule domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: class_rule domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: class_rule domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: class_rule domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: class_rule domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: class_rule domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: class_rule domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: class_rule domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: class_rule domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: class_rule domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: class_rule domain_of: - common_metadata range: uriorcurie","title":"Induced"},{"location":"CommonMetadata/","text":"Class: CommonMetadata Generic metadata shared across definitions URI: linkml:CommonMetadata classDiagram class CommonMetadata CommonMetadata <|-- Element CommonMetadata <|-- StructuredAlias CommonMetadata <|-- AnonymousExpression CommonMetadata <|-- PathExpression CommonMetadata <|-- ClassRule CommonMetadata <|-- PatternExpression CommonMetadata <|-- ImportExpression CommonMetadata <|-- PermissibleValue CommonMetadata <|-- UniqueKey CommonMetadata : aliases CommonMetadata : alt_descriptions CommonMetadata : broad_mappings CommonMetadata : close_mappings CommonMetadata : comments CommonMetadata : deprecated CommonMetadata : deprecated_element_has_exact_replacement CommonMetadata : deprecated_element_has_possible_replacement CommonMetadata : description CommonMetadata : exact_mappings CommonMetadata : examples CommonMetadata : from_schema CommonMetadata : imported_from CommonMetadata : in_language CommonMetadata : in_subset CommonMetadata : mappings CommonMetadata : narrow_mappings CommonMetadata : notes CommonMetadata : rank CommonMetadata : related_mappings CommonMetadata : see_also CommonMetadata : source CommonMetadata : structured_aliases CommonMetadata : title CommonMetadata : todos Slots Name Cardinality and Range Description Inheritance description 0..1 recommended String a description of the element's purpose and use direct alt_descriptions 0..* AltDescription A sourced alternative description for an element direct title 0..1 String the official title of the element direct deprecated 0..1 String Description of why and when this element will no longer be used direct todos 0..* String Outstanding issue that needs resolution direct notes 0..* String editorial notes about an element intended for internal consumption direct comments 0..* String notes and comments about an element intended for external consumption direct examples 0..* Example example usages of an element direct in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... direct from_schema 0..1 Uri id of the schema that defined the element direct imported_from 0..1 String the imports entry that this element was derived from direct source 0..1 Uriorcurie A related resource from which the element is derived direct in_language 0..1 String direct see_also 0..* Uriorcurie a reference direct deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... direct deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... direct aliases 0..* String Alaternate names for the element direct structured_aliases 0..* StructuredAlias A list of structured_alias objects direct mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... direct exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... direct close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... direct related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... direct narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... direct rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... direct Mixin Usage mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:CommonMetadata native linkml:CommonMetadata LinkML Source Direct name: common_metadata description: Generic metadata shared across definitions in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true slots: - description - alt_descriptions - title - deprecated - todos - notes - comments - examples - in_subset - from_schema - imported_from - source - in_language - see_also - deprecated element has exact replacement - deprecated element has possible replacement - aliases - structured_aliases - mappings - exact mappings - close mappings - related mappings - narrow mappings - broad mappings - rank Induced name: common_metadata description: Generic metadata shared across definitions in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true attributes: description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: common_metadata domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: common_metadata domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: common_metadata domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: common_metadata domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: common_metadata domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: common_metadata domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: common_metadata domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: common_metadata domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: common_metadata domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: common_metadata domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: common_metadata domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: common_metadata domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: common_metadata domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: common_metadata domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: common_metadata domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: common_metadata domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: common_metadata domain_of: - common_metadata - class_rule range: integer","title":"Class: CommonMetadata"},{"location":"CommonMetadata/#class-commonmetadata","text":"Generic metadata shared across definitions URI: linkml:CommonMetadata classDiagram class CommonMetadata CommonMetadata <|-- Element CommonMetadata <|-- StructuredAlias CommonMetadata <|-- AnonymousExpression CommonMetadata <|-- PathExpression CommonMetadata <|-- ClassRule CommonMetadata <|-- PatternExpression CommonMetadata <|-- ImportExpression CommonMetadata <|-- PermissibleValue CommonMetadata <|-- UniqueKey CommonMetadata : aliases CommonMetadata : alt_descriptions CommonMetadata : broad_mappings CommonMetadata : close_mappings CommonMetadata : comments CommonMetadata : deprecated CommonMetadata : deprecated_element_has_exact_replacement CommonMetadata : deprecated_element_has_possible_replacement CommonMetadata : description CommonMetadata : exact_mappings CommonMetadata : examples CommonMetadata : from_schema CommonMetadata : imported_from CommonMetadata : in_language CommonMetadata : in_subset CommonMetadata : mappings CommonMetadata : narrow_mappings CommonMetadata : notes CommonMetadata : rank CommonMetadata : related_mappings CommonMetadata : see_also CommonMetadata : source CommonMetadata : structured_aliases CommonMetadata : title CommonMetadata : todos","title":"Class: CommonMetadata"},{"location":"CommonMetadata/#slots","text":"Name Cardinality and Range Description Inheritance description 0..1 recommended String a description of the element's purpose and use direct alt_descriptions 0..* AltDescription A sourced alternative description for an element direct title 0..1 String the official title of the element direct deprecated 0..1 String Description of why and when this element will no longer be used direct todos 0..* String Outstanding issue that needs resolution direct notes 0..* String editorial notes about an element intended for internal consumption direct comments 0..* String notes and comments about an element intended for external consumption direct examples 0..* Example example usages of an element direct in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... direct from_schema 0..1 Uri id of the schema that defined the element direct imported_from 0..1 String the imports entry that this element was derived from direct source 0..1 Uriorcurie A related resource from which the element is derived direct in_language 0..1 String direct see_also 0..* Uriorcurie a reference direct deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... direct deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... direct aliases 0..* String Alaternate names for the element direct structured_aliases 0..* StructuredAlias A list of structured_alias objects direct mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... direct exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... direct close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... direct related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... direct narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... direct broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... direct rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... direct","title":"Slots"},{"location":"CommonMetadata/#mixin-usage","text":"mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Mixin Usage"},{"location":"CommonMetadata/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"CommonMetadata/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"CommonMetadata/#mappings","text":"Mapping Type Mapped Value self linkml:CommonMetadata native linkml:CommonMetadata","title":"Mappings"},{"location":"CommonMetadata/#linkml-source","text":"","title":"LinkML Source"},{"location":"CommonMetadata/#direct","text":"name: common_metadata description: Generic metadata shared across definitions in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true slots: - description - alt_descriptions - title - deprecated - todos - notes - comments - examples - in_subset - from_schema - imported_from - source - in_language - see_also - deprecated element has exact replacement - deprecated element has possible replacement - aliases - structured_aliases - mappings - exact mappings - close mappings - related mappings - narrow mappings - broad mappings - rank","title":"Direct"},{"location":"CommonMetadata/#induced","text":"name: common_metadata description: Generic metadata shared across definitions in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 mixin: true attributes: description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: common_metadata domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: common_metadata domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: common_metadata domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: common_metadata domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: common_metadata domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: common_metadata domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: common_metadata domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: common_metadata domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: common_metadata domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: common_metadata domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: common_metadata domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: common_metadata domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: common_metadata domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: common_metadata domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: common_metadata domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: common_metadata domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: common_metadata domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: common_metadata domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: common_metadata domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Date/","text":"Type: Date a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Date"},{"location":"Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: xsd:date base : XSDDate uri : xsd:date repr : str","title":"Type: Date"},{"location":"Date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Date/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"DateOrDatetime/","text":"Type: DateOrDatetime Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#type-dateordatetime","text":"Either a date or a datetime URI: linkml:DateOrDatetime base : str uri : linkml:DateOrDatetime repr : str","title":"Type: DateOrDatetime"},{"location":"DateOrDatetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DateOrDatetime/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Datetime/","text":"Type: Datetime The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Datetime"},{"location":"Datetime/#type-datetime","text":"The combination of a date and time URI: xsd:dateTime base : XSDDateTime uri : xsd:dateTime repr : str","title":"Type: Datetime"},{"location":"Datetime/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Datetime/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Decimal/","text":"Type: Decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Decimal"},{"location":"Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: xsd:decimal base : Decimal uri : xsd:decimal","title":"Type: Decimal"},{"location":"Decimal/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Decimal/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Definition/","text":"Class: Definition abstract base class for core metaclasses NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Definition classDiagram class Definition Element <|-- Definition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from Definition <|-- EnumDefinition Definition <|-- SlotDefinition Definition <|-- ClassDefinition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ] SlotDefinition [ SlotExpression ] ClassDefinition [ ClassExpression ] Slots Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... direct mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... direct apply_to 0..* Definition Used to extend class or slot definitions direct values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... direct created_by 0..1 Uriorcurie agent that created the element direct created_on 0..1 Datetime time at which the element was created direct last_updated_on 0..1 Datetime time at which the element was last updated direct modified_by 0..1 Uriorcurie agent that modified the element direct status 0..1 Uriorcurie status of the element direct string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object direct name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used SchemaDefinition slot_names_unique domain Definition TypeExpression pattern domain Definition TypeExpression structured_pattern domain Definition AnonymousTypeExpression pattern domain Definition AnonymousTypeExpression structured_pattern domain Definition TypeDefinition pattern domain Definition TypeDefinition structured_pattern domain Definition Definition is_a domain Definition Definition is_a range Definition Definition abstract domain Definition Definition mixin domain Definition Definition mixins domain Definition Definition mixins range Definition Definition apply_to domain Definition Definition apply_to range Definition Definition values_from domain Definition Definition string_serialization domain Definition EnumDefinition is_a domain Definition EnumDefinition is_a range Definition EnumDefinition abstract domain Definition EnumDefinition mixin domain Definition EnumDefinition mixins domain Definition EnumDefinition mixins range Definition EnumDefinition apply_to domain Definition EnumDefinition apply_to range Definition EnumDefinition values_from domain Definition EnumDefinition string_serialization domain Definition SlotExpression pattern domain Definition SlotExpression structured_pattern domain Definition AnonymousSlotExpression pattern domain Definition AnonymousSlotExpression structured_pattern domain Definition SlotDefinition owner range Definition SlotDefinition disjoint_with domain Definition SlotDefinition children_are_mutually_disjoint domain Definition SlotDefinition pattern domain Definition SlotDefinition structured_pattern domain Definition SlotDefinition is_a domain Definition SlotDefinition abstract domain Definition SlotDefinition mixin domain Definition SlotDefinition mixins domain Definition SlotDefinition apply_to domain Definition SlotDefinition values_from domain Definition SlotDefinition string_serialization domain Definition AnonymousClassExpression is_a domain Definition AnonymousClassExpression is_a range Definition ClassDefinition slot_names_unique domain Definition ClassDefinition disjoint_with domain Definition ClassDefinition children_are_mutually_disjoint domain Definition ClassDefinition is_a domain Definition ClassDefinition abstract domain Definition ClassDefinition mixin domain Definition ClassDefinition mixins domain Definition ClassDefinition apply_to domain Definition ClassDefinition values_from domain Definition ClassDefinition string_serialization domain Definition See Also https://en.wikipedia.org/wiki/Data_element_definition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Definition native linkml:Definition LinkML Source Direct name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true slots: - is_a - abstract - mixin - mixins - apply_to - values_from - created_by - created_on - last_updated_on - modified_by - status - string_serialization Induced name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: definition domain_of: - common_metadata - class_rule range: integer","title":"Class: Definition"},{"location":"Definition/#class-definition","text":"abstract base class for core metaclasses NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Definition classDiagram class Definition Element <|-- Definition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from Definition <|-- EnumDefinition Definition <|-- SlotDefinition Definition <|-- ClassDefinition Definition : abstract Definition : aliases Definition : alt_descriptions Definition : annotations Definition : apply_to Definition : broad_mappings Definition : close_mappings Definition : comments Definition : conforms_to Definition : created_by Definition : created_on Definition : definition_uri Definition : deprecated Definition : deprecated_element_has_exact_replacement Definition : deprecated_element_has_possible_replacement Definition : description Definition : exact_mappings Definition : examples Definition : extensions Definition : from_schema Definition : id_prefixes Definition : imported_from Definition : in_language Definition : in_subset Definition : is_a Definition : last_updated_on Definition : local_names Definition : mappings Definition : mixin Definition : mixins Definition : modified_by Definition : name Definition : narrow_mappings Definition : notes Definition : rank Definition : related_mappings Definition : see_also Definition : source Definition : status Definition : string_serialization Definition : structured_aliases Definition : title Definition : todos Definition : values_from","title":"Class: Definition"},{"location":"Definition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ] SlotDefinition [ SlotExpression ] ClassDefinition [ ClassExpression ]","title":"Inheritance"},{"location":"Definition/#slots","text":"Name Cardinality and Range Description Inheritance is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... direct abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... direct mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... direct mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... direct apply_to 0..* Definition Used to extend class or slot definitions direct values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... direct created_by 0..1 Uriorcurie agent that created the element direct created_on 0..1 Datetime time at which the element was created direct last_updated_on 0..1 Datetime time at which the element was last updated direct modified_by 0..1 Uriorcurie agent that modified the element direct status 0..1 Uriorcurie status of the element direct string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object direct name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"Definition/#usages","text":"used by used in type used SchemaDefinition slot_names_unique domain Definition TypeExpression pattern domain Definition TypeExpression structured_pattern domain Definition AnonymousTypeExpression pattern domain Definition AnonymousTypeExpression structured_pattern domain Definition TypeDefinition pattern domain Definition TypeDefinition structured_pattern domain Definition Definition is_a domain Definition Definition is_a range Definition Definition abstract domain Definition Definition mixin domain Definition Definition mixins domain Definition Definition mixins range Definition Definition apply_to domain Definition Definition apply_to range Definition Definition values_from domain Definition Definition string_serialization domain Definition EnumDefinition is_a domain Definition EnumDefinition is_a range Definition EnumDefinition abstract domain Definition EnumDefinition mixin domain Definition EnumDefinition mixins domain Definition EnumDefinition mixins range Definition EnumDefinition apply_to domain Definition EnumDefinition apply_to range Definition EnumDefinition values_from domain Definition EnumDefinition string_serialization domain Definition SlotExpression pattern domain Definition SlotExpression structured_pattern domain Definition AnonymousSlotExpression pattern domain Definition AnonymousSlotExpression structured_pattern domain Definition SlotDefinition owner range Definition SlotDefinition disjoint_with domain Definition SlotDefinition children_are_mutually_disjoint domain Definition SlotDefinition pattern domain Definition SlotDefinition structured_pattern domain Definition SlotDefinition is_a domain Definition SlotDefinition abstract domain Definition SlotDefinition mixin domain Definition SlotDefinition mixins domain Definition SlotDefinition apply_to domain Definition SlotDefinition values_from domain Definition SlotDefinition string_serialization domain Definition AnonymousClassExpression is_a domain Definition AnonymousClassExpression is_a range Definition ClassDefinition slot_names_unique domain Definition ClassDefinition disjoint_with domain Definition ClassDefinition children_are_mutually_disjoint domain Definition ClassDefinition is_a domain Definition ClassDefinition abstract domain Definition ClassDefinition mixin domain Definition ClassDefinition mixins domain Definition ClassDefinition apply_to domain Definition ClassDefinition values_from domain Definition ClassDefinition string_serialization domain Definition","title":"Usages"},{"location":"Definition/#see-also","text":"https://en.wikipedia.org/wiki/Data_element_definition","title":"See Also"},{"location":"Definition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Definition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Definition/#mappings","text":"Mapping Type Mapped Value self linkml:Definition native linkml:Definition","title":"Mappings"},{"location":"Definition/#linkml-source","text":"","title":"LinkML Source"},{"location":"Definition/#direct","text":"name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true slots: - is_a - abstract - mixin - mixins - apply_to - values_from - created_by - created_on - last_updated_on - modified_by - status - string_serialization","title":"Direct"},{"location":"Definition/#induced","text":"name: definition description: abstract base class for core metaclasses in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_definition rank: 1000 is_a: element abstract: true attributes: is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Double/","text":"Type: Double A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Double"},{"location":"Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: xsd:double base : float uri : xsd:double","title":"Type: Double"},{"location":"Double/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Double/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Element/","text":"Class: Element a named element in the model NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Element classDiagram class Element Extensible <|-- Element Annotatable <|-- Element CommonMetadata <|-- Element Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos Element <|-- SchemaDefinition Element <|-- TypeDefinition Element <|-- SubsetDefinition Element <|-- Definition Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos Inheritance Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition TypeDefinition [ TypeExpression ] SubsetDefinition Definition Slots Name Cardinality and Range Description Inheritance name 1..1 String the unique name of the element within the context of the schema direct id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... direct definition_uri 0..1 Uriorcurie the \"native\" URI of the element direct local_names 0..* LocalName direct conforms_to 0..1 String An established standard to which the element conforms direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used CommonMetadata description domain Element CommonMetadata alt_descriptions domain Element CommonMetadata title domain Element CommonMetadata deprecated domain Element CommonMetadata todos domain Element CommonMetadata notes domain Element CommonMetadata comments domain Element CommonMetadata examples domain Element CommonMetadata in_subset domain Element CommonMetadata from_schema domain Element CommonMetadata imported_from domain Element CommonMetadata source domain Element CommonMetadata see_also domain Element CommonMetadata aliases domain Element Element name domain Element Element id_prefixes domain Element Element definition_uri domain Element Element local_names domain Element Element conforms_to domain Element Element description domain Element Element alt_descriptions domain Element Element title domain Element Element deprecated domain Element Element todos domain Element Element notes domain Element Element comments domain Element Element examples domain Element Element in_subset domain Element Element from_schema domain Element Element imported_from domain Element Element source domain Element Element see_also domain Element Element aliases domain Element SchemaDefinition keywords domain Element SchemaDefinition name domain Element SchemaDefinition id_prefixes domain Element SchemaDefinition definition_uri domain Element SchemaDefinition local_names domain Element SchemaDefinition conforms_to domain Element SchemaDefinition description domain Element SchemaDefinition alt_descriptions domain Element SchemaDefinition title domain Element SchemaDefinition deprecated domain Element SchemaDefinition todos domain Element SchemaDefinition notes domain Element SchemaDefinition comments domain Element SchemaDefinition examples domain Element SchemaDefinition in_subset domain Element SchemaDefinition from_schema domain Element SchemaDefinition imported_from domain Element SchemaDefinition source domain Element SchemaDefinition see_also domain Element SchemaDefinition aliases domain Element TypeDefinition union_of domain Element TypeDefinition name domain Element TypeDefinition id_prefixes domain Element TypeDefinition definition_uri domain Element TypeDefinition local_names domain Element TypeDefinition conforms_to domain Element TypeDefinition description domain Element TypeDefinition alt_descriptions domain Element TypeDefinition title domain Element TypeDefinition deprecated domain Element TypeDefinition todos domain Element TypeDefinition notes domain Element TypeDefinition comments domain Element TypeDefinition examples domain Element TypeDefinition in_subset domain Element TypeDefinition from_schema domain Element TypeDefinition imported_from domain Element TypeDefinition source domain Element TypeDefinition see_also domain Element TypeDefinition aliases domain Element SubsetDefinition name domain Element SubsetDefinition id_prefixes domain Element SubsetDefinition definition_uri domain Element SubsetDefinition local_names domain Element SubsetDefinition conforms_to domain Element SubsetDefinition description domain Element SubsetDefinition alt_descriptions domain Element SubsetDefinition title domain Element SubsetDefinition deprecated domain Element SubsetDefinition todos domain Element SubsetDefinition notes domain Element SubsetDefinition comments domain Element SubsetDefinition examples domain Element SubsetDefinition in_subset domain Element SubsetDefinition from_schema domain Element SubsetDefinition imported_from domain Element SubsetDefinition source domain Element SubsetDefinition see_also domain Element SubsetDefinition aliases domain Element Definition created_by domain Element Definition created_on domain Element Definition last_updated_on domain Element Definition modified_by domain Element Definition status domain Element Definition name domain Element Definition id_prefixes domain Element Definition definition_uri domain Element Definition local_names domain Element Definition conforms_to domain Element Definition description domain Element Definition alt_descriptions domain Element Definition title domain Element Definition deprecated domain Element Definition todos domain Element Definition notes domain Element Definition comments domain Element Definition examples domain Element Definition in_subset domain Element Definition from_schema domain Element Definition imported_from domain Element Definition source domain Element Definition see_also domain Element Definition aliases domain Element EnumDefinition created_by domain Element EnumDefinition created_on domain Element EnumDefinition last_updated_on domain Element EnumDefinition modified_by domain Element EnumDefinition status domain Element EnumDefinition name domain Element EnumDefinition id_prefixes domain Element EnumDefinition definition_uri domain Element EnumDefinition local_names domain Element EnumDefinition conforms_to domain Element EnumDefinition description domain Element EnumDefinition alt_descriptions domain Element EnumDefinition title domain Element EnumDefinition deprecated domain Element EnumDefinition todos domain Element EnumDefinition notes domain Element EnumDefinition comments domain Element EnumDefinition examples domain Element EnumDefinition in_subset domain Element EnumDefinition from_schema domain Element EnumDefinition imported_from domain Element EnumDefinition source domain Element EnumDefinition see_also domain Element EnumDefinition aliases domain Element StructuredAlias description domain Element StructuredAlias alt_descriptions domain Element StructuredAlias title domain Element StructuredAlias deprecated domain Element StructuredAlias todos domain Element StructuredAlias notes domain Element StructuredAlias comments domain Element StructuredAlias examples domain Element StructuredAlias in_subset domain Element StructuredAlias from_schema domain Element StructuredAlias imported_from domain Element StructuredAlias source domain Element StructuredAlias see_also domain Element StructuredAlias aliases domain Element AnonymousExpression description domain Element AnonymousExpression alt_descriptions domain Element AnonymousExpression title domain Element AnonymousExpression deprecated domain Element AnonymousExpression todos domain Element AnonymousExpression notes domain Element AnonymousExpression comments domain Element AnonymousExpression examples domain Element AnonymousExpression in_subset domain Element AnonymousExpression from_schema domain Element AnonymousExpression imported_from domain Element AnonymousExpression source domain Element AnonymousExpression see_also domain Element AnonymousExpression aliases domain Element PathExpression description domain Element PathExpression alt_descriptions domain Element PathExpression title domain Element PathExpression deprecated domain Element PathExpression todos domain Element PathExpression notes domain Element PathExpression comments domain Element PathExpression examples domain Element PathExpression in_subset domain Element PathExpression from_schema domain Element PathExpression imported_from domain Element PathExpression source domain Element PathExpression see_also domain Element PathExpression aliases domain Element SlotExpression range range Element AnonymousSlotExpression range range Element AnonymousSlotExpression description domain Element AnonymousSlotExpression alt_descriptions domain Element AnonymousSlotExpression title domain Element AnonymousSlotExpression deprecated domain Element AnonymousSlotExpression todos domain Element AnonymousSlotExpression notes domain Element AnonymousSlotExpression comments domain Element AnonymousSlotExpression examples domain Element AnonymousSlotExpression in_subset domain Element AnonymousSlotExpression from_schema domain Element AnonymousSlotExpression imported_from domain Element AnonymousSlotExpression source domain Element AnonymousSlotExpression see_also domain Element AnonymousSlotExpression aliases domain Element SlotDefinition union_of domain Element SlotDefinition range range Element SlotDefinition created_by domain Element SlotDefinition created_on domain Element SlotDefinition last_updated_on domain Element SlotDefinition modified_by domain Element SlotDefinition status domain Element SlotDefinition name domain Element SlotDefinition id_prefixes domain Element SlotDefinition definition_uri domain Element SlotDefinition local_names domain Element SlotDefinition conforms_to domain Element SlotDefinition description domain Element SlotDefinition alt_descriptions domain Element SlotDefinition title domain Element SlotDefinition deprecated domain Element SlotDefinition todos domain Element SlotDefinition notes domain Element SlotDefinition comments domain Element SlotDefinition examples domain Element SlotDefinition in_subset domain Element SlotDefinition from_schema domain Element SlotDefinition imported_from domain Element SlotDefinition source domain Element SlotDefinition see_also domain Element SlotDefinition aliases domain Element AnonymousClassExpression description domain Element AnonymousClassExpression alt_descriptions domain Element AnonymousClassExpression title domain Element AnonymousClassExpression deprecated domain Element AnonymousClassExpression todos domain Element AnonymousClassExpression notes domain Element AnonymousClassExpression comments domain Element AnonymousClassExpression examples domain Element AnonymousClassExpression in_subset domain Element AnonymousClassExpression from_schema domain Element AnonymousClassExpression imported_from domain Element AnonymousClassExpression source domain Element AnonymousClassExpression see_also domain Element AnonymousClassExpression aliases domain Element ClassDefinition union_of domain Element ClassDefinition created_by domain Element ClassDefinition created_on domain Element ClassDefinition last_updated_on domain Element ClassDefinition modified_by domain Element ClassDefinition status domain Element ClassDefinition name domain Element ClassDefinition id_prefixes domain Element ClassDefinition definition_uri domain Element ClassDefinition local_names domain Element ClassDefinition conforms_to domain Element ClassDefinition description domain Element ClassDefinition alt_descriptions domain Element ClassDefinition title domain Element ClassDefinition deprecated domain Element ClassDefinition todos domain Element ClassDefinition notes domain Element ClassDefinition comments domain Element ClassDefinition examples domain Element ClassDefinition in_subset domain Element ClassDefinition from_schema domain Element ClassDefinition imported_from domain Element ClassDefinition source domain Element ClassDefinition see_also domain Element ClassDefinition aliases domain Element ClassRule description domain Element ClassRule alt_descriptions domain Element ClassRule title domain Element ClassRule deprecated domain Element ClassRule todos domain Element ClassRule notes domain Element ClassRule comments domain Element ClassRule examples domain Element ClassRule in_subset domain Element ClassRule from_schema domain Element ClassRule imported_from domain Element ClassRule source domain Element ClassRule see_also domain Element ClassRule aliases domain Element PatternExpression description domain Element PatternExpression alt_descriptions domain Element PatternExpression title domain Element PatternExpression deprecated domain Element PatternExpression todos domain Element PatternExpression notes domain Element PatternExpression comments domain Element PatternExpression examples domain Element PatternExpression in_subset domain Element PatternExpression from_schema domain Element PatternExpression imported_from domain Element PatternExpression source domain Element PatternExpression see_also domain Element PatternExpression aliases domain Element ImportExpression description domain Element ImportExpression alt_descriptions domain Element ImportExpression title domain Element ImportExpression deprecated domain Element ImportExpression todos domain Element ImportExpression notes domain Element ImportExpression comments domain Element ImportExpression examples domain Element ImportExpression in_subset domain Element ImportExpression from_schema domain Element ImportExpression imported_from domain Element ImportExpression source domain Element ImportExpression see_also domain Element ImportExpression aliases domain Element PermissibleValue description domain Element PermissibleValue alt_descriptions domain Element PermissibleValue title domain Element PermissibleValue deprecated domain Element PermissibleValue todos domain Element PermissibleValue notes domain Element PermissibleValue comments domain Element PermissibleValue examples domain Element PermissibleValue in_subset domain Element PermissibleValue from_schema domain Element PermissibleValue imported_from domain Element PermissibleValue source domain Element PermissibleValue see_also domain Element PermissibleValue aliases domain Element UniqueKey description domain Element UniqueKey alt_descriptions domain Element UniqueKey title domain Element UniqueKey deprecated domain Element UniqueKey todos domain Element UniqueKey notes domain Element UniqueKey comments domain Element UniqueKey examples domain Element UniqueKey in_subset domain Element UniqueKey from_schema domain Element UniqueKey imported_from domain Element UniqueKey source domain Element UniqueKey see_also domain Element UniqueKey aliases domain Element Aliases data element object See Also https://en.wikipedia.org/wiki/Data_element Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Element native linkml:Element LinkML Source Direct name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata slots: - name - id_prefixes - definition_uri - local_names - conforms_to Induced name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: element domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: element domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: element domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: element domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: element domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: element domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: element domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: element domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: element domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: element domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: element domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: element domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: element domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: element domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: element domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: element domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: element domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: element domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: element domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: element domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: element domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: element domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: element domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: element domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: element domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: element domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: element domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: element domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: element domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: element domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: element domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: element domain_of: - common_metadata - class_rule range: integer","title":"Class: Element"},{"location":"Element/#class-element","text":"a named element in the model NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Element classDiagram class Element Extensible <|-- Element Annotatable <|-- Element CommonMetadata <|-- Element Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos Element <|-- SchemaDefinition Element <|-- TypeDefinition Element <|-- SubsetDefinition Element <|-- Definition Element : aliases Element : alt_descriptions Element : annotations Element : broad_mappings Element : close_mappings Element : comments Element : conforms_to Element : definition_uri Element : deprecated Element : deprecated_element_has_exact_replacement Element : deprecated_element_has_possible_replacement Element : description Element : exact_mappings Element : examples Element : extensions Element : from_schema Element : id_prefixes Element : imported_from Element : in_language Element : in_subset Element : local_names Element : mappings Element : name Element : narrow_mappings Element : notes Element : rank Element : related_mappings Element : see_also Element : source Element : structured_aliases Element : title Element : todos","title":"Class: Element"},{"location":"Element/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition TypeDefinition [ TypeExpression ] SubsetDefinition Definition","title":"Inheritance"},{"location":"Element/#slots","text":"Name Cardinality and Range Description Inheritance name 1..1 String the unique name of the element within the context of the schema direct id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... direct definition_uri 0..1 Uriorcurie the \"native\" URI of the element direct local_names 0..* LocalName direct conforms_to 0..1 String An established standard to which the element conforms direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"Element/#usages","text":"used by used in type used CommonMetadata description domain Element CommonMetadata alt_descriptions domain Element CommonMetadata title domain Element CommonMetadata deprecated domain Element CommonMetadata todos domain Element CommonMetadata notes domain Element CommonMetadata comments domain Element CommonMetadata examples domain Element CommonMetadata in_subset domain Element CommonMetadata from_schema domain Element CommonMetadata imported_from domain Element CommonMetadata source domain Element CommonMetadata see_also domain Element CommonMetadata aliases domain Element Element name domain Element Element id_prefixes domain Element Element definition_uri domain Element Element local_names domain Element Element conforms_to domain Element Element description domain Element Element alt_descriptions domain Element Element title domain Element Element deprecated domain Element Element todos domain Element Element notes domain Element Element comments domain Element Element examples domain Element Element in_subset domain Element Element from_schema domain Element Element imported_from domain Element Element source domain Element Element see_also domain Element Element aliases domain Element SchemaDefinition keywords domain Element SchemaDefinition name domain Element SchemaDefinition id_prefixes domain Element SchemaDefinition definition_uri domain Element SchemaDefinition local_names domain Element SchemaDefinition conforms_to domain Element SchemaDefinition description domain Element SchemaDefinition alt_descriptions domain Element SchemaDefinition title domain Element SchemaDefinition deprecated domain Element SchemaDefinition todos domain Element SchemaDefinition notes domain Element SchemaDefinition comments domain Element SchemaDefinition examples domain Element SchemaDefinition in_subset domain Element SchemaDefinition from_schema domain Element SchemaDefinition imported_from domain Element SchemaDefinition source domain Element SchemaDefinition see_also domain Element SchemaDefinition aliases domain Element TypeDefinition union_of domain Element TypeDefinition name domain Element TypeDefinition id_prefixes domain Element TypeDefinition definition_uri domain Element TypeDefinition local_names domain Element TypeDefinition conforms_to domain Element TypeDefinition description domain Element TypeDefinition alt_descriptions domain Element TypeDefinition title domain Element TypeDefinition deprecated domain Element TypeDefinition todos domain Element TypeDefinition notes domain Element TypeDefinition comments domain Element TypeDefinition examples domain Element TypeDefinition in_subset domain Element TypeDefinition from_schema domain Element TypeDefinition imported_from domain Element TypeDefinition source domain Element TypeDefinition see_also domain Element TypeDefinition aliases domain Element SubsetDefinition name domain Element SubsetDefinition id_prefixes domain Element SubsetDefinition definition_uri domain Element SubsetDefinition local_names domain Element SubsetDefinition conforms_to domain Element SubsetDefinition description domain Element SubsetDefinition alt_descriptions domain Element SubsetDefinition title domain Element SubsetDefinition deprecated domain Element SubsetDefinition todos domain Element SubsetDefinition notes domain Element SubsetDefinition comments domain Element SubsetDefinition examples domain Element SubsetDefinition in_subset domain Element SubsetDefinition from_schema domain Element SubsetDefinition imported_from domain Element SubsetDefinition source domain Element SubsetDefinition see_also domain Element SubsetDefinition aliases domain Element Definition created_by domain Element Definition created_on domain Element Definition last_updated_on domain Element Definition modified_by domain Element Definition status domain Element Definition name domain Element Definition id_prefixes domain Element Definition definition_uri domain Element Definition local_names domain Element Definition conforms_to domain Element Definition description domain Element Definition alt_descriptions domain Element Definition title domain Element Definition deprecated domain Element Definition todos domain Element Definition notes domain Element Definition comments domain Element Definition examples domain Element Definition in_subset domain Element Definition from_schema domain Element Definition imported_from domain Element Definition source domain Element Definition see_also domain Element Definition aliases domain Element EnumDefinition created_by domain Element EnumDefinition created_on domain Element EnumDefinition last_updated_on domain Element EnumDefinition modified_by domain Element EnumDefinition status domain Element EnumDefinition name domain Element EnumDefinition id_prefixes domain Element EnumDefinition definition_uri domain Element EnumDefinition local_names domain Element EnumDefinition conforms_to domain Element EnumDefinition description domain Element EnumDefinition alt_descriptions domain Element EnumDefinition title domain Element EnumDefinition deprecated domain Element EnumDefinition todos domain Element EnumDefinition notes domain Element EnumDefinition comments domain Element EnumDefinition examples domain Element EnumDefinition in_subset domain Element EnumDefinition from_schema domain Element EnumDefinition imported_from domain Element EnumDefinition source domain Element EnumDefinition see_also domain Element EnumDefinition aliases domain Element StructuredAlias description domain Element StructuredAlias alt_descriptions domain Element StructuredAlias title domain Element StructuredAlias deprecated domain Element StructuredAlias todos domain Element StructuredAlias notes domain Element StructuredAlias comments domain Element StructuredAlias examples domain Element StructuredAlias in_subset domain Element StructuredAlias from_schema domain Element StructuredAlias imported_from domain Element StructuredAlias source domain Element StructuredAlias see_also domain Element StructuredAlias aliases domain Element AnonymousExpression description domain Element AnonymousExpression alt_descriptions domain Element AnonymousExpression title domain Element AnonymousExpression deprecated domain Element AnonymousExpression todos domain Element AnonymousExpression notes domain Element AnonymousExpression comments domain Element AnonymousExpression examples domain Element AnonymousExpression in_subset domain Element AnonymousExpression from_schema domain Element AnonymousExpression imported_from domain Element AnonymousExpression source domain Element AnonymousExpression see_also domain Element AnonymousExpression aliases domain Element PathExpression description domain Element PathExpression alt_descriptions domain Element PathExpression title domain Element PathExpression deprecated domain Element PathExpression todos domain Element PathExpression notes domain Element PathExpression comments domain Element PathExpression examples domain Element PathExpression in_subset domain Element PathExpression from_schema domain Element PathExpression imported_from domain Element PathExpression source domain Element PathExpression see_also domain Element PathExpression aliases domain Element SlotExpression range range Element AnonymousSlotExpression range range Element AnonymousSlotExpression description domain Element AnonymousSlotExpression alt_descriptions domain Element AnonymousSlotExpression title domain Element AnonymousSlotExpression deprecated domain Element AnonymousSlotExpression todos domain Element AnonymousSlotExpression notes domain Element AnonymousSlotExpression comments domain Element AnonymousSlotExpression examples domain Element AnonymousSlotExpression in_subset domain Element AnonymousSlotExpression from_schema domain Element AnonymousSlotExpression imported_from domain Element AnonymousSlotExpression source domain Element AnonymousSlotExpression see_also domain Element AnonymousSlotExpression aliases domain Element SlotDefinition union_of domain Element SlotDefinition range range Element SlotDefinition created_by domain Element SlotDefinition created_on domain Element SlotDefinition last_updated_on domain Element SlotDefinition modified_by domain Element SlotDefinition status domain Element SlotDefinition name domain Element SlotDefinition id_prefixes domain Element SlotDefinition definition_uri domain Element SlotDefinition local_names domain Element SlotDefinition conforms_to domain Element SlotDefinition description domain Element SlotDefinition alt_descriptions domain Element SlotDefinition title domain Element SlotDefinition deprecated domain Element SlotDefinition todos domain Element SlotDefinition notes domain Element SlotDefinition comments domain Element SlotDefinition examples domain Element SlotDefinition in_subset domain Element SlotDefinition from_schema domain Element SlotDefinition imported_from domain Element SlotDefinition source domain Element SlotDefinition see_also domain Element SlotDefinition aliases domain Element AnonymousClassExpression description domain Element AnonymousClassExpression alt_descriptions domain Element AnonymousClassExpression title domain Element AnonymousClassExpression deprecated domain Element AnonymousClassExpression todos domain Element AnonymousClassExpression notes domain Element AnonymousClassExpression comments domain Element AnonymousClassExpression examples domain Element AnonymousClassExpression in_subset domain Element AnonymousClassExpression from_schema domain Element AnonymousClassExpression imported_from domain Element AnonymousClassExpression source domain Element AnonymousClassExpression see_also domain Element AnonymousClassExpression aliases domain Element ClassDefinition union_of domain Element ClassDefinition created_by domain Element ClassDefinition created_on domain Element ClassDefinition last_updated_on domain Element ClassDefinition modified_by domain Element ClassDefinition status domain Element ClassDefinition name domain Element ClassDefinition id_prefixes domain Element ClassDefinition definition_uri domain Element ClassDefinition local_names domain Element ClassDefinition conforms_to domain Element ClassDefinition description domain Element ClassDefinition alt_descriptions domain Element ClassDefinition title domain Element ClassDefinition deprecated domain Element ClassDefinition todos domain Element ClassDefinition notes domain Element ClassDefinition comments domain Element ClassDefinition examples domain Element ClassDefinition in_subset domain Element ClassDefinition from_schema domain Element ClassDefinition imported_from domain Element ClassDefinition source domain Element ClassDefinition see_also domain Element ClassDefinition aliases domain Element ClassRule description domain Element ClassRule alt_descriptions domain Element ClassRule title domain Element ClassRule deprecated domain Element ClassRule todos domain Element ClassRule notes domain Element ClassRule comments domain Element ClassRule examples domain Element ClassRule in_subset domain Element ClassRule from_schema domain Element ClassRule imported_from domain Element ClassRule source domain Element ClassRule see_also domain Element ClassRule aliases domain Element PatternExpression description domain Element PatternExpression alt_descriptions domain Element PatternExpression title domain Element PatternExpression deprecated domain Element PatternExpression todos domain Element PatternExpression notes domain Element PatternExpression comments domain Element PatternExpression examples domain Element PatternExpression in_subset domain Element PatternExpression from_schema domain Element PatternExpression imported_from domain Element PatternExpression source domain Element PatternExpression see_also domain Element PatternExpression aliases domain Element ImportExpression description domain Element ImportExpression alt_descriptions domain Element ImportExpression title domain Element ImportExpression deprecated domain Element ImportExpression todos domain Element ImportExpression notes domain Element ImportExpression comments domain Element ImportExpression examples domain Element ImportExpression in_subset domain Element ImportExpression from_schema domain Element ImportExpression imported_from domain Element ImportExpression source domain Element ImportExpression see_also domain Element ImportExpression aliases domain Element PermissibleValue description domain Element PermissibleValue alt_descriptions domain Element PermissibleValue title domain Element PermissibleValue deprecated domain Element PermissibleValue todos domain Element PermissibleValue notes domain Element PermissibleValue comments domain Element PermissibleValue examples domain Element PermissibleValue in_subset domain Element PermissibleValue from_schema domain Element PermissibleValue imported_from domain Element PermissibleValue source domain Element PermissibleValue see_also domain Element PermissibleValue aliases domain Element UniqueKey description domain Element UniqueKey alt_descriptions domain Element UniqueKey title domain Element UniqueKey deprecated domain Element UniqueKey todos domain Element UniqueKey notes domain Element UniqueKey comments domain Element UniqueKey examples domain Element UniqueKey in_subset domain Element UniqueKey from_schema domain Element UniqueKey imported_from domain Element UniqueKey source domain Element UniqueKey see_also domain Element UniqueKey aliases domain Element","title":"Usages"},{"location":"Element/#aliases","text":"data element object","title":"Aliases"},{"location":"Element/#see-also","text":"https://en.wikipedia.org/wiki/Data_element","title":"See Also"},{"location":"Element/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Element/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Element/#mappings","text":"Mapping Type Mapped Value self linkml:Element native linkml:Element","title":"Mappings"},{"location":"Element/#linkml-source","text":"","title":"LinkML Source"},{"location":"Element/#direct","text":"name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata slots: - name - id_prefixes - definition_uri - local_names - conforms_to","title":"Direct"},{"location":"Element/#induced","text":"name: element description: a named element in the model in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element aliases: - data element - object rank: 1000 abstract: true mixins: - extensible - annotatable - common_metadata attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: element domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: element domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: element domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: element domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: element domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: element domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: element domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: element domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: element domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: element domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: element domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: element domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: element domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: element domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: element domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: element domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: element domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: element domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: element domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: element domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: element domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: element domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: element domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: element domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: element domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: element domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: element domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: element domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: element domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: element domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: element domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: element domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"EnumDefinition/","text":"Class: EnumDefinition an element whose instances must be drawn from a specified set of permissible values URI: linkml:EnumDefinition classDiagram class EnumDefinition EnumExpression <|-- EnumDefinition Definition <|-- EnumDefinition EnumDefinition : abstract EnumDefinition : aliases EnumDefinition : alt_descriptions EnumDefinition : annotations EnumDefinition : apply_to EnumDefinition : broad_mappings EnumDefinition : close_mappings EnumDefinition : code_set EnumDefinition : code_set_tag EnumDefinition : code_set_version EnumDefinition : comments EnumDefinition : concepts EnumDefinition : conforms_to EnumDefinition : created_by EnumDefinition : created_on EnumDefinition : definition_uri EnumDefinition : deprecated EnumDefinition : deprecated_element_has_exact_replacement EnumDefinition : deprecated_element_has_possible_replacement EnumDefinition : description EnumDefinition : enum_uri EnumDefinition : exact_mappings EnumDefinition : examples EnumDefinition : extensions EnumDefinition : from_schema EnumDefinition : id_prefixes EnumDefinition : imported_from EnumDefinition : in_language EnumDefinition : in_subset EnumDefinition : include EnumDefinition : inherits EnumDefinition : is_a EnumDefinition : last_updated_on EnumDefinition : local_names EnumDefinition : mappings EnumDefinition : matches EnumDefinition : minus EnumDefinition : mixin EnumDefinition : mixins EnumDefinition : modified_by EnumDefinition : name EnumDefinition : narrow_mappings EnumDefinition : notes EnumDefinition : permissible_values EnumDefinition : pv_formula EnumDefinition : rank EnumDefinition : reachable_from EnumDefinition : related_mappings EnumDefinition : see_also EnumDefinition : source EnumDefinition : status EnumDefinition : string_serialization EnumDefinition : structured_aliases EnumDefinition : title EnumDefinition : todos EnumDefinition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ] Slots Name Cardinality and Range Description Inheritance enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... direct code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition created_by 0..1 Uriorcurie agent that created the element Definition created_on 0..1 Datetime time at which the element was created Definition last_updated_on 0..1 Datetime time at which the element was last updated Definition modified_by 0..1 Uriorcurie agent that modified the element Definition status 0..1 Uriorcurie status of the element Definition string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used SchemaDefinition enums range EnumDefinition EnumExpression inherits range EnumDefinition AnonymousEnumExpression inherits range EnumDefinition EnumDefinition enum_uri domain EnumDefinition EnumDefinition inherits range EnumDefinition Aliases enum value set term set Terminology Value Set Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:EnumDefinition native linkml:EnumDefinition exact qb:HierarchicalCodeList, NCIT:C113497 close skos:ConceptScheme LinkML Source Direct name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression slots: - enum_uri Induced name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression attributes: enum_uri: name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri owner: enum_definition domain_of: - enum_definition range: uriorcurie code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_definition domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_definition domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_definition domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_definition domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_definition domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_definition domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_definition domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_definition domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_definition domain_of: - enum_expression range: uriorcurie is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: enum_definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: enum_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: enum_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: enum_definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: enum_definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: enum_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: enum_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: enum_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: enum_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: enum_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: enum_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: enum_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: enum_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: enum_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: enum_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: enum_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: enum_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: enum_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: enum_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: enum_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: enum_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: enum_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: enum_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: enum_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: enum_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: enum_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: enum_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: enum_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: enum_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: enum_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: enum_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: enum_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: enum_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: enum_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: enum_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: enum_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: EnumDefinition"},{"location":"EnumDefinition/#class-enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values URI: linkml:EnumDefinition classDiagram class EnumDefinition EnumExpression <|-- EnumDefinition Definition <|-- EnumDefinition EnumDefinition : abstract EnumDefinition : aliases EnumDefinition : alt_descriptions EnumDefinition : annotations EnumDefinition : apply_to EnumDefinition : broad_mappings EnumDefinition : close_mappings EnumDefinition : code_set EnumDefinition : code_set_tag EnumDefinition : code_set_version EnumDefinition : comments EnumDefinition : concepts EnumDefinition : conforms_to EnumDefinition : created_by EnumDefinition : created_on EnumDefinition : definition_uri EnumDefinition : deprecated EnumDefinition : deprecated_element_has_exact_replacement EnumDefinition : deprecated_element_has_possible_replacement EnumDefinition : description EnumDefinition : enum_uri EnumDefinition : exact_mappings EnumDefinition : examples EnumDefinition : extensions EnumDefinition : from_schema EnumDefinition : id_prefixes EnumDefinition : imported_from EnumDefinition : in_language EnumDefinition : in_subset EnumDefinition : include EnumDefinition : inherits EnumDefinition : is_a EnumDefinition : last_updated_on EnumDefinition : local_names EnumDefinition : mappings EnumDefinition : matches EnumDefinition : minus EnumDefinition : mixin EnumDefinition : mixins EnumDefinition : modified_by EnumDefinition : name EnumDefinition : narrow_mappings EnumDefinition : notes EnumDefinition : permissible_values EnumDefinition : pv_formula EnumDefinition : rank EnumDefinition : reachable_from EnumDefinition : related_mappings EnumDefinition : see_also EnumDefinition : source EnumDefinition : status EnumDefinition : string_serialization EnumDefinition : structured_aliases EnumDefinition : title EnumDefinition : todos EnumDefinition : values_from","title":"Class: EnumDefinition"},{"location":"EnumDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition EnumDefinition [ EnumExpression ]","title":"Inheritance"},{"location":"EnumDefinition/#slots","text":"Name Cardinality and Range Description Inheritance enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... direct code_set 0..1 Uriorcurie the identifier of an enumeration code set EnumExpression code_set_tag 0..1 String the version tag of the enumeration code set EnumExpression code_set_version 0..1 String the version identifier of the enumeration code set EnumExpression pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values EnumExpression permissible_values 0..* PermissibleValue A list of possible values for a slot range EnumExpression include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... EnumExpression minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... EnumExpression inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum EnumExpression reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... EnumExpression matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... EnumExpression concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values EnumExpression is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... Definition abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Definition apply_to 0..* Definition Used to extend class or slot definitions Definition values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition created_by 0..1 Uriorcurie agent that created the element Definition created_on 0..1 Datetime time at which the element was created Definition last_updated_on 0..1 Datetime time at which the element was last updated Definition modified_by 0..1 Uriorcurie agent that modified the element Definition status 0..1 Uriorcurie status of the element Definition string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"EnumDefinition/#usages","text":"used by used in type used SchemaDefinition enums range EnumDefinition EnumExpression inherits range EnumDefinition AnonymousEnumExpression inherits range EnumDefinition EnumDefinition enum_uri domain EnumDefinition EnumDefinition inherits range EnumDefinition","title":"Usages"},{"location":"EnumDefinition/#aliases","text":"enum value set term set Terminology Value Set","title":"Aliases"},{"location":"EnumDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"EnumDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:EnumDefinition native linkml:EnumDefinition exact qb:HierarchicalCodeList, NCIT:C113497 close skos:ConceptScheme","title":"Mappings"},{"location":"EnumDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"EnumDefinition/#direct","text":"name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression slots: - enum_uri","title":"Direct"},{"location":"EnumDefinition/#induced","text":"name: enum_definition description: an element whose instances must be drawn from a specified set of permissible values in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - enum - value set - term set - Terminology Value Set exact_mappings: - qb:HierarchicalCodeList - NCIT:C113497 close_mappings: - skos:ConceptScheme rank: 5 is_a: definition mixins: - enum_expression attributes: enum_uri: name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri owner: enum_definition domain_of: - enum_definition range: uriorcurie code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_definition domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_definition domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_definition domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_definition domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_definition domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_definition domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_definition domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_definition domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_definition domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_definition domain_of: - enum_expression range: uriorcurie is_a: name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: enum_definition domain_of: - definition - anonymous_class_expression range: definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: enum_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: enum_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. comments: - mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - traits rank: 13 domain: definition multivalued: true alias: mixins owner: enum_definition domain_of: - definition range: definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: enum_definition domain_of: - definition range: definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: enum_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: enum_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: enum_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: enum_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: enum_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: enum_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: enum_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: enum_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: enum_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: enum_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: enum_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: enum_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: enum_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: enum_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: enum_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: enum_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: enum_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: enum_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: enum_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: enum_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: enum_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: enum_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: enum_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: enum_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: enum_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: enum_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: enum_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: enum_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: enum_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: enum_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: enum_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: enum_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: enum_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"EnumExpression/","text":"Class: EnumExpression An expression that constrains the range of a slot URI: linkml:EnumExpression classDiagram class EnumExpression Expression <|-- EnumExpression EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from EnumExpression <|-- AnonymousEnumExpression EnumExpression <|-- EnumDefinition EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from Inheritance Expression EnumExpression Slots Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set direct code_set_tag 0..1 String the version tag of the enumeration code set direct code_set_version 0..1 String the version identifier of the enumeration code set direct pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values direct permissible_values 0..* PermissibleValue A list of possible values for a slot range direct include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... direct minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... direct inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum direct reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... direct matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... direct concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values direct Usages used by used in type used EnumExpression code_set domain EnumExpression EnumExpression code_set_tag domain EnumExpression EnumExpression code_set_version domain EnumExpression EnumExpression pv_formula domain EnumExpression EnumExpression permissible_values domain EnumExpression EnumExpression include domain EnumExpression EnumExpression minus domain EnumExpression EnumExpression inherits domain EnumExpression EnumExpression reachable_from domain EnumExpression EnumExpression matches domain EnumExpression EnumExpression concepts domain EnumExpression AnonymousEnumExpression code_set domain EnumExpression AnonymousEnumExpression code_set_tag domain EnumExpression AnonymousEnumExpression code_set_version domain EnumExpression AnonymousEnumExpression pv_formula domain EnumExpression AnonymousEnumExpression permissible_values domain EnumExpression AnonymousEnumExpression include domain EnumExpression AnonymousEnumExpression minus domain EnumExpression AnonymousEnumExpression inherits domain EnumExpression AnonymousEnumExpression reachable_from domain EnumExpression AnonymousEnumExpression matches domain EnumExpression AnonymousEnumExpression concepts domain EnumExpression EnumDefinition code_set domain EnumExpression EnumDefinition code_set_tag domain EnumExpression EnumDefinition code_set_version domain EnumExpression EnumDefinition pv_formula domain EnumExpression EnumDefinition permissible_values domain EnumExpression EnumDefinition include domain EnumExpression EnumDefinition minus domain EnumExpression EnumDefinition inherits domain EnumExpression EnumDefinition reachable_from domain EnumExpression EnumDefinition matches domain EnumExpression EnumDefinition concepts domain EnumExpression SlotExpression enum_range range EnumExpression AnonymousSlotExpression enum_range range EnumExpression SlotDefinition enum_range range EnumExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:EnumExpression native linkml:EnumExpression LinkML Source Direct name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression slots: - code_set - code_set_tag - code_set_version - pv_formula - permissible_values - include - minus - inherits - reachable_from - matches - concepts Induced name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_expression domain_of: - enum_expression range: uriorcurie","title":"Class: EnumExpression"},{"location":"EnumExpression/#class-enumexpression","text":"An expression that constrains the range of a slot URI: linkml:EnumExpression classDiagram class EnumExpression Expression <|-- EnumExpression EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from EnumExpression <|-- AnonymousEnumExpression EnumExpression <|-- EnumDefinition EnumExpression : code_set EnumExpression : code_set_tag EnumExpression : code_set_version EnumExpression : concepts EnumExpression : include EnumExpression : inherits EnumExpression : matches EnumExpression : minus EnumExpression : permissible_values EnumExpression : pv_formula EnumExpression : reachable_from","title":"Class: EnumExpression"},{"location":"EnumExpression/#inheritance","text":"Expression EnumExpression","title":"Inheritance"},{"location":"EnumExpression/#slots","text":"Name Cardinality and Range Description Inheritance code_set 0..1 Uriorcurie the identifier of an enumeration code set direct code_set_tag 0..1 String the version tag of the enumeration code set direct code_set_version 0..1 String the version identifier of the enumeration code set direct pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values direct permissible_values 0..* PermissibleValue A list of possible values for a slot range direct include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... direct minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... direct inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum direct reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... direct matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... direct concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values direct","title":"Slots"},{"location":"EnumExpression/#usages","text":"used by used in type used EnumExpression code_set domain EnumExpression EnumExpression code_set_tag domain EnumExpression EnumExpression code_set_version domain EnumExpression EnumExpression pv_formula domain EnumExpression EnumExpression permissible_values domain EnumExpression EnumExpression include domain EnumExpression EnumExpression minus domain EnumExpression EnumExpression inherits domain EnumExpression EnumExpression reachable_from domain EnumExpression EnumExpression matches domain EnumExpression EnumExpression concepts domain EnumExpression AnonymousEnumExpression code_set domain EnumExpression AnonymousEnumExpression code_set_tag domain EnumExpression AnonymousEnumExpression code_set_version domain EnumExpression AnonymousEnumExpression pv_formula domain EnumExpression AnonymousEnumExpression permissible_values domain EnumExpression AnonymousEnumExpression include domain EnumExpression AnonymousEnumExpression minus domain EnumExpression AnonymousEnumExpression inherits domain EnumExpression AnonymousEnumExpression reachable_from domain EnumExpression AnonymousEnumExpression matches domain EnumExpression AnonymousEnumExpression concepts domain EnumExpression EnumDefinition code_set domain EnumExpression EnumDefinition code_set_tag domain EnumExpression EnumDefinition code_set_version domain EnumExpression EnumDefinition pv_formula domain EnumExpression EnumDefinition permissible_values domain EnumExpression EnumDefinition include domain EnumExpression EnumDefinition minus domain EnumExpression EnumDefinition inherits domain EnumExpression EnumDefinition reachable_from domain EnumExpression EnumDefinition matches domain EnumExpression EnumDefinition concepts domain EnumExpression SlotExpression enum_range range EnumExpression AnonymousSlotExpression enum_range range EnumExpression SlotDefinition enum_range range EnumExpression","title":"Usages"},{"location":"EnumExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"EnumExpression/#mappings","text":"Mapping Type Mapped Value self linkml:EnumExpression native linkml:EnumExpression","title":"Mappings"},{"location":"EnumExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"EnumExpression/#direct","text":"name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression slots: - code_set - code_set_tag - code_set_version - pv_formula - permissible_values - include - minus - inherits - reachable_from - matches - concepts","title":"Direct"},{"location":"EnumExpression/#induced","text":"name: enum_expression description: An expression that constrains the range of a slot from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression attributes: code_set: name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set owner: enum_expression domain_of: - enum_expression range: uriorcurie code_set_tag: name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag owner: enum_expression domain_of: - enum_expression range: string code_set_version: name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version owner: enum_expression domain_of: - enum_expression range: string pv_formula: name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula owner: enum_expression domain_of: - enum_expression range: pv_formula_options permissible_values: name: permissible_values description: A list of possible values for a slot range in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: permissible_values owner: enum_expression domain_of: - enum_expression range: permissible_value inlined: true include: name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression minus: name: minus description: An enum expression that yields a list of permissible values that are to be subtracted from the enum in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: minus owner: enum_expression domain_of: - enum_expression range: anonymous_enum_expression inherits: name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits owner: enum_expression domain_of: - enum_expression range: enum_definition reachable_from: name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from owner: enum_expression domain_of: - enum_expression range: reachability_query matches: name: matches description: Specifies a match query that is used to calculate the list of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: matches owner: enum_expression domain_of: - enum_expression range: match_query concepts: name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts owner: enum_expression domain_of: - enum_expression range: uriorcurie","title":"Induced"},{"location":"Example/","text":"Class: Example usage example and description URI: linkml:Example classDiagram class Example Example : value Example : value_description Slots Name Cardinality and Range Description Inheritance value 0..1 String example value direct value_description 0..1 String description of what the value is doing direct Usages used by used in type used CommonMetadata examples range Example Element examples range Example SchemaDefinition examples range Example TypeDefinition examples range Example SubsetDefinition examples range Example Definition examples range Example EnumDefinition examples range Example StructuredAlias examples range Example AnonymousExpression examples range Example PathExpression examples range Example AnonymousSlotExpression examples range Example SlotDefinition examples range Example AnonymousClassExpression examples range Example ClassDefinition examples range Example ClassRule examples range Example PatternExpression examples range Example ImportExpression examples range Example Example value domain Example Example value_description domain Example PermissibleValue examples range Example UniqueKey examples range Example Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Example native linkml:Example LinkML Source Direct name: example description: usage example and description in_subset: - 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BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - value - value_description","title":"Direct"},{"location":"Example/#induced","text":"name: example description: usage example and description in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: value: name: value description: example value in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example slot_uri: skos:example alias: value owner: example domain_of: - example range: string value_description: name: value_description description: description of what the value is doing in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example alias: description owner: example domain_of: - example range: string","title":"Induced"},{"location":"Expression/","text":"Class: Expression general mixin for any class that can represent some form of expression NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Expression classDiagram class Expression Expression <|-- TypeExpression Expression <|-- EnumExpression Expression <|-- StructuredAlias Expression <|-- AnonymousExpression Expression <|-- PathExpression Expression <|-- SlotExpression Inheritance Expression TypeExpression EnumExpression SlotExpression Slots Name Cardinality and Range Description Inheritance Mixin Usage mixed into description StructuredAlias object that contains meta data about a synonym or alias including where it ca... 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Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Expression native linkml:Expression LinkML Source Direct name: expression description: general mixin for any class that can represent some form of expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixin: true status: testing Induced name: expression description: general mixin for any class that can represent some form of expression from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true mixin: true status: testing","title":"Class: Expression"},{"location":"Expression/#class-expression","text":"general mixin for any class that can represent some form of expression NOTE : this is an abstract class and should not be instantiated directly URI: linkml:Expression classDiagram class Expression Expression <|-- TypeExpression Expression <|-- EnumExpression Expression <|-- StructuredAlias Expression <|-- AnonymousExpression Expression <|-- PathExpression Expression <|-- SlotExpression","title":"Class: Expression"},{"location":"Expression/#inheritance","text":"Expression TypeExpression EnumExpression SlotExpression","title":"Inheritance"},{"location":"Expression/#slots","text":"Name Cardinality and Range Description Inheritance","title":"Slots"},{"location":"Expression/#mixin-usage","text":"mixed into description StructuredAlias object that contains meta data about a synonym or alias including where it ca... 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UniqueKey a collection of slots whose values uniquely identify an instance of a class Usages used by used in type used Element extensions domain Extensible SchemaDefinition extensions domain Extensible TypeDefinition extensions domain Extensible SubsetDefinition extensions domain Extensible Definition extensions domain Extensible EnumDefinition extensions domain Extensible StructuredAlias extensions domain Extensible AnonymousExpression extensions domain Extensible PathExpression extensions domain Extensible AnonymousSlotExpression extensions domain Extensible SlotDefinition extensions domain Extensible AnonymousClassExpression extensions domain Extensible ClassDefinition extensions domain Extensible ClassRule extensions domain Extensible PatternExpression extensions domain Extensible ImportExpression extensions domain Extensible PermissibleValue extensions domain Extensible UniqueKey extensions domain Extensible Annotation extensions domain Extensible Extension extensions domain Extensible Extensible extensions domain Extensible Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions Mappings Mapping Type Mapped Value self linkml:Extensible native linkml:Extensible LinkML Source Direct name: extensible description: mixin for classes that support extension from_schema: https://w3id.org/linkml/extensions rank: 1000 mixin: true slots: - extensions Induced name: extensible description: mixin for classes that support extension from_schema: https://w3id.org/linkml/extensions rank: 1000 mixin: true attributes: extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: extensible domain_of: - extension - extensible range: extension inlined: true","title":"Class: Extensible"},{"location":"Extensible/#class-extensible","text":"mixin for classes that support extension URI: linkml:Extensible classDiagram class Extensible Extensible <|-- Element Extensible <|-- StructuredAlias Extensible <|-- AnonymousExpression Extensible <|-- PathExpression Extensible <|-- ClassRule Extensible <|-- PatternExpression Extensible <|-- ImportExpression Extensible <|-- PermissibleValue Extensible <|-- UniqueKey Extensible : extensions","title":"Class: Extensible"},{"location":"Extensible/#slots","text":"Name Cardinality and Range Description Inheritance extensions 0..* Extension a tag/text tuple attached to an arbitrary element direct","title":"Slots"},{"location":"Extensible/#mixin-usage","text":"mixed into description Element a named element in the model StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Mixin Usage"},{"location":"Extensible/#usages","text":"used by used in type used Element extensions domain Extensible SchemaDefinition extensions domain Extensible TypeDefinition extensions domain Extensible SubsetDefinition extensions domain Extensible Definition extensions domain Extensible EnumDefinition extensions domain Extensible StructuredAlias extensions domain Extensible AnonymousExpression extensions domain Extensible PathExpression extensions domain Extensible AnonymousSlotExpression extensions domain Extensible SlotDefinition extensions domain Extensible AnonymousClassExpression extensions domain Extensible ClassDefinition extensions domain Extensible ClassRule extensions domain Extensible PatternExpression extensions domain Extensible ImportExpression extensions domain Extensible PermissibleValue extensions domain Extensible UniqueKey extensions domain Extensible Annotation extensions domain Extensible Extension extensions domain Extensible Extensible extensions domain Extensible","title":"Usages"},{"location":"Extensible/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Extensible/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"Extensible/#mappings","text":"Mapping Type Mapped Value self linkml:Extensible native linkml:Extensible","title":"Mappings"},{"location":"Extensible/#linkml-source","text":"","title":"LinkML Source"},{"location":"Extensible/#direct","text":"name: extensible description: mixin for classes that support extension from_schema: https://w3id.org/linkml/extensions rank: 1000 mixin: true slots: - extensions","title":"Direct"},{"location":"Extensible/#induced","text":"name: extensible description: mixin for classes that support extension from_schema: https://w3id.org/linkml/extensions rank: 1000 mixin: true attributes: extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: extensible domain_of: - extension - extensible range: extension inlined: true","title":"Induced"},{"location":"Extension/","text":"Class: Extension a tag/value pair used to add non-model information to an entry URI: linkml:Extension classDiagram class Extension Extension <|-- Annotation Extension : extension_tag Extension : extension_value Extension : extensions Inheritance Extension Annotation [ Annotatable ] Slots Name Cardinality and Range Description Inheritance extension_tag 1..1 Uriorcurie a tag associated with an extension direct extension_value 1..1 String the actual annotation direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element direct Usages used by used in type used Element extensions range Extension SchemaDefinition extensions range Extension TypeDefinition extensions range Extension SubsetDefinition extensions range Extension Definition extensions range Extension EnumDefinition extensions range Extension StructuredAlias extensions range Extension AnonymousExpression extensions range Extension PathExpression extensions range Extension AnonymousSlotExpression extensions range Extension SlotDefinition extensions range Extension AnonymousClassExpression extensions range Extension ClassDefinition extensions range Extension ClassRule extensions range Extension PatternExpression extensions range Extension ImportExpression extensions range Extension PermissibleValue extensions range Extension UniqueKey extensions range Extension Annotation extension_tag domain Extension Annotation extension_value domain Extension Annotation extensions range Extension Extension extension_tag domain Extension Extension extension_value domain Extension Extension extensions range Extension Extensible extensions range Extension Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions Mappings Mapping Type Mapped Value self linkml:Extension native linkml:Extension LinkML Source Direct name: extension description: a tag/value pair used to add non-model information to an entry from_schema: https://w3id.org/linkml/extensions rank: 1000 slots: - extension_tag - extension_value - extensions Induced name: extension description: a tag/value pair used to add non-model information to an entry from_schema: https://w3id.org/linkml/extensions rank: 1000 attributes: extension_tag: name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag owner: extension domain_of: - extension range: uriorcurie required: true extension_value: name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value owner: extension domain_of: - extension range: string required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: extension domain_of: - extension - extensible range: extension inlined: true","title":"Class: Extension"},{"location":"Extension/#class-extension","text":"a tag/value pair used to add non-model information to an entry URI: linkml:Extension classDiagram class Extension Extension <|-- Annotation Extension : extension_tag Extension : extension_value Extension : extensions","title":"Class: Extension"},{"location":"Extension/#inheritance","text":"Extension Annotation [ Annotatable ]","title":"Inheritance"},{"location":"Extension/#slots","text":"Name Cardinality and Range Description Inheritance extension_tag 1..1 Uriorcurie a tag associated with an extension direct extension_value 1..1 String the actual annotation direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element direct","title":"Slots"},{"location":"Extension/#usages","text":"used by used in type used Element extensions range Extension SchemaDefinition extensions range Extension TypeDefinition extensions range Extension SubsetDefinition extensions range Extension Definition extensions range Extension EnumDefinition extensions range Extension StructuredAlias extensions range Extension AnonymousExpression extensions range Extension PathExpression extensions range Extension AnonymousSlotExpression extensions range Extension SlotDefinition extensions range Extension AnonymousClassExpression extensions range Extension ClassDefinition extensions range Extension ClassRule extensions range Extension PatternExpression extensions range Extension ImportExpression extensions range Extension PermissibleValue extensions range Extension UniqueKey extensions range Extension Annotation extension_tag domain Extension Annotation extension_value domain Extension Annotation extensions range Extension Extension extension_tag domain Extension Extension extension_value domain Extension Extension extensions range Extension Extensible extensions range Extension","title":"Usages"},{"location":"Extension/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Extension/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"Extension/#mappings","text":"Mapping Type Mapped Value self linkml:Extension native linkml:Extension","title":"Mappings"},{"location":"Extension/#linkml-source","text":"","title":"LinkML Source"},{"location":"Extension/#direct","text":"name: extension description: a tag/value pair used to add non-model information to an entry from_schema: https://w3id.org/linkml/extensions rank: 1000 slots: - extension_tag - extension_value - extensions","title":"Direct"},{"location":"Extension/#induced","text":"name: extension description: a tag/value pair used to add non-model information to an entry from_schema: https://w3id.org/linkml/extensions rank: 1000 attributes: extension_tag: name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag owner: extension domain_of: - extension range: uriorcurie required: true extension_value: name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value owner: extension domain_of: - extension range: string required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: extension domain_of: - extension - extensible range: extension inlined: true","title":"Induced"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"ImportExpression/","text":"Class: ImportExpression an expression describing an import URI: linkml:ImportExpression classDiagram class ImportExpression Extensible <|-- ImportExpression Annotatable <|-- ImportExpression CommonMetadata <|-- ImportExpression ImportExpression : aliases ImportExpression : alt_descriptions ImportExpression : annotations ImportExpression : broad_mappings ImportExpression : close_mappings ImportExpression : comments ImportExpression : deprecated ImportExpression : deprecated_element_has_exact_replacement ImportExpression : deprecated_element_has_possible_replacement ImportExpression : description ImportExpression : exact_mappings ImportExpression : examples ImportExpression : extensions ImportExpression : from_schema ImportExpression : import_as ImportExpression : import_from ImportExpression : import_map ImportExpression : imported_from ImportExpression : in_language ImportExpression : in_subset ImportExpression : mappings ImportExpression : narrow_mappings ImportExpression : notes ImportExpression : rank ImportExpression : related_mappings ImportExpression : see_also ImportExpression : source ImportExpression : structured_aliases ImportExpression : title ImportExpression : todos Inheritance ImportExpression [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance import_from 1..1 Uriorcurie direct import_as 0..1 Ncname direct import_map 0..* Setting direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used ImportExpression import_from domain ImportExpression ImportExpression import_as domain ImportExpression ImportExpression import_map domain ImportExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ImportExpression native linkml:ImportExpression LinkML Source Direct name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing slots: - import_from - import_as - import_map Induced name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing attributes: import_from: name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from owner: import_expression domain_of: - import_expression range: uriorcurie required: true import_as: name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as owner: import_expression domain_of: - import_expression range: ncname import_map: name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map owner: import_expression domain_of: - import_expression range: setting inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: import_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: import_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: import_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: import_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: import_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: import_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: import_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: import_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: import_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: import_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: import_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: import_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: import_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: import_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: import_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: import_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: import_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: import_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: import_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: import_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: ImportExpression"},{"location":"ImportExpression/#class-importexpression","text":"an expression describing an import URI: linkml:ImportExpression classDiagram class ImportExpression Extensible <|-- ImportExpression Annotatable <|-- ImportExpression CommonMetadata <|-- ImportExpression ImportExpression : aliases ImportExpression : alt_descriptions ImportExpression : annotations ImportExpression : broad_mappings ImportExpression : close_mappings ImportExpression : comments ImportExpression : deprecated ImportExpression : deprecated_element_has_exact_replacement ImportExpression : deprecated_element_has_possible_replacement ImportExpression : description ImportExpression : exact_mappings ImportExpression : examples ImportExpression : extensions ImportExpression : from_schema ImportExpression : import_as ImportExpression : import_from ImportExpression : import_map ImportExpression : imported_from ImportExpression : in_language ImportExpression : in_subset ImportExpression : mappings ImportExpression : narrow_mappings ImportExpression : notes ImportExpression : rank ImportExpression : related_mappings ImportExpression : see_also ImportExpression : source ImportExpression : structured_aliases ImportExpression : title ImportExpression : todos","title":"Class: ImportExpression"},{"location":"ImportExpression/#inheritance","text":"ImportExpression [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"ImportExpression/#slots","text":"Name Cardinality and Range Description Inheritance import_from 1..1 Uriorcurie direct import_as 0..1 Ncname direct import_map 0..* Setting direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"ImportExpression/#usages","text":"used by used in type used ImportExpression import_from domain ImportExpression ImportExpression import_as domain ImportExpression ImportExpression import_map domain ImportExpression","title":"Usages"},{"location":"ImportExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ImportExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ImportExpression/#mappings","text":"Mapping Type Mapped Value self linkml:ImportExpression native linkml:ImportExpression","title":"Mappings"},{"location":"ImportExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"ImportExpression/#direct","text":"name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing slots: - import_from - import_as - import_map","title":"Direct"},{"location":"ImportExpression/#induced","text":"name: import_expression description: an expression describing an import from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata status: testing attributes: import_from: name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from owner: import_expression domain_of: - import_expression range: uriorcurie required: true import_as: name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as owner: import_expression domain_of: - import_expression range: ncname import_map: name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map owner: import_expression domain_of: - import_expression range: setting inlined: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: import_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: import_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: import_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: import_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: import_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: import_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: import_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: import_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: import_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: import_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: import_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: import_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: import_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: import_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: import_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: import_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: import_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: import_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: import_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: import_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: import_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: import_expression domain_of: - 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URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Nodeidentifier/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"ObjectOriented/","text":"ObjectOriented The set of constructs that have an equivalent in a minimal object oriented metamodel URI: ObjectOriented Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta","title":"ObjectOriented"},{"location":"ObjectOriented/#objectoriented","text":"The set of constructs that have an equivalent in a minimal object oriented metamodel URI: ObjectOriented","title":"ObjectOriented"},{"location":"ObjectOriented/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ObjectOriented/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ObjectOrientedProfile/","text":"Subset: ObjectOrientedProfile A profile that includes all the metamodel elements whose semantics can be expressed using a minimal implementation of the object oriented metamodel as employed by languages such as Java and Python, or in modeling frameworks like UML URI: ObjectOrientedProfile Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... 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Slots in subset Slot Description name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema enums An index to the collection of all enum definitions in the schema types An index to the collection of all type definitions in the schema multivalued true means that slot can have more than one value required true means that the slot must be present in the loaded definition is_a A primary parent class or slot from which inheritable metaslots are propagate... mixins A collection of secondary parent classes or slots from which inheritable meta... attributes Inline definition of slots abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... range defines the type of the object of the slot Enumerations in subset Enumeration Description","title":"ObjectOrientedProfile"},{"location":"ObjectOrientedProfile/#subset-objectorientedprofile","text":"A profile that includes all the metamodel elements whose semantics can be expressed using a minimal implementation of the object oriented metamodel as employed by languages such as Java and Python, or in modeling frameworks like UML URI: ObjectOrientedProfile","title":"Subset: ObjectOrientedProfile"},{"location":"ObjectOrientedProfile/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ObjectOrientedProfile/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ObjectOrientedProfile/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Classes in subset"},{"location":"ObjectOrientedProfile/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema types 0..* TypeDefinition An index to the collection of all type definitions in the schema","title":"SchemaDefinition"},{"location":"ObjectOrientedProfile/#classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... attributes 0..* SlotDefinition Inline definition of slots abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an...","title":"ClassDefinition"},{"location":"ObjectOrientedProfile/#enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an...","title":"EnumDefinition"},{"location":"ObjectOrientedProfile/#slots-in-subset","text":"Slot Description name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema enums An index to the collection of all enum definitions in the schema types An index to the collection of all type definitions in the schema multivalued true means that slot can have more than one value required true means that the slot must be present in the loaded definition is_a A primary parent class or slot from which inheritable metaslots are propagate... mixins A collection of secondary parent classes or slots from which inheritable meta... attributes Inline definition of slots abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... range defines the type of the object of the slot","title":"Slots in subset"},{"location":"ObjectOrientedProfile/#enumerations-in-subset","text":"Enumeration Description","title":"Enumerations in subset"},{"location":"Objectidentifier/","text":"Type: Objectidentifier A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str Comments Used for inheritence and type checking Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#comments","text":"Used for inheritence and type checking","title":"Comments"},{"location":"Objectidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Objectidentifier/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Owl/","text":"Owl Set of slots that appear in the OWL representation of a model URI: Owl Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta","title":"Owl"},{"location":"Owl/#owl","text":"Set of slots that appear in the OWL representation of a model URI: Owl","title":"Owl"},{"location":"Owl/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Owl/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"OwlProfile/","text":"Subset: OwlProfile A profile that includes all the metamodel elements whose semantics can be expressed in OWL URI: OwlProfile Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema types 0..* TypeDefinition An index to the collection of all type definitions in the schema imports 0..* Uriorcurie other schemas that are included in this schema ClassDefinition an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... attributes 0..* SlotDefinition Inline definition of slots union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... SlotDefinition an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... union_of 0..* SlotDefinition indicates that the domain element consists exactly of the members of the elem... TypeDefinition an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... EnumDefinition an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... Slots in subset Slot Description id The official schema URI name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema enums An index to the collection of all enum definitions in the schema types An index to the collection of all type definitions in the schema is_a A primary parent class or slot from which inheritable metaslots are propagate... mixins A collection of secondary parent classes or slots from which inheritable meta... imports other schemas that are included in this schema attributes Inline definition of slots union_of indicates that the domain element consists exactly of the members of the elem... Enumerations in subset Enumeration Description","title":"OwlProfile"},{"location":"OwlProfile/#subset-owlprofile","text":"A profile that includes all the metamodel elements whose semantics can be expressed in OWL URI: OwlProfile","title":"Subset: OwlProfile"},{"location":"OwlProfile/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"OwlProfile/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"OwlProfile/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Classes in subset"},{"location":"OwlProfile/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema types 0..* TypeDefinition An index to the collection of all type definitions in the schema imports 0..* Uriorcurie other schemas that are included in this schema","title":"SchemaDefinition"},{"location":"OwlProfile/#classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... attributes 0..* SlotDefinition Inline definition of slots union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem...","title":"ClassDefinition"},{"location":"OwlProfile/#slotdefinition","text":"an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... union_of 0..* SlotDefinition indicates that the domain element consists exactly of the members of the elem...","title":"SlotDefinition"},{"location":"OwlProfile/#typedefinition","text":"an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem...","title":"TypeDefinition"},{"location":"OwlProfile/#enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta...","title":"EnumDefinition"},{"location":"OwlProfile/#slots-in-subset","text":"Slot Description id The official schema URI name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema enums An index to the collection of all enum definitions in the schema types An index to the collection of all type definitions in the schema is_a A primary parent class or slot from which inheritable metaslots are propagate... mixins A collection of secondary parent classes or slots from which inheritable meta... imports other schemas that are included in this schema attributes Inline definition of slots union_of indicates that the domain element consists exactly of the members of the elem...","title":"Slots in subset"},{"location":"OwlProfile/#enumerations-in-subset","text":"Enumeration Description","title":"Enumerations in subset"},{"location":"PathExpression/","text":"Class: PathExpression An expression that describes an abstract path from an object to another through a sequence of slot lookups URI: linkml:PathExpression classDiagram class PathExpression Expression <|-- PathExpression Extensible <|-- PathExpression Annotatable <|-- PathExpression CommonMetadata <|-- PathExpression PathExpression : aliases PathExpression : all_of PathExpression : alt_descriptions PathExpression : annotations PathExpression : any_of PathExpression : broad_mappings PathExpression : close_mappings PathExpression : comments PathExpression : deprecated PathExpression : deprecated_element_has_exact_replacement PathExpression : deprecated_element_has_possible_replacement PathExpression : description PathExpression : exact_mappings PathExpression : exactly_one_of PathExpression : examples PathExpression : extensions PathExpression : followed_by PathExpression : from_schema PathExpression : imported_from PathExpression : in_language PathExpression : in_subset PathExpression : mappings PathExpression : narrow_mappings PathExpression : none_of PathExpression : notes PathExpression : range_expression PathExpression : rank PathExpression : related_mappings PathExpression : reversed PathExpression : see_also PathExpression : source PathExpression : structured_aliases PathExpression : title PathExpression : todos PathExpression : traverse Inheritance PathExpression [ Expression Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance followed_by 0..1 Expression in a sequential list, this indicates the next member direct none_of 0..* Expression holds if none of the expressions hold direct any_of 0..* Expression holds if at least one of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct reversed 0..1 Boolean true if the slot is to be inversed direct traverse 0..1 SlotDefinition the slot to traverse direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used PathExpression followed_by range PathExpression PathExpression none_of range PathExpression PathExpression any_of range PathExpression PathExpression all_of range PathExpression PathExpression exactly_one_of range PathExpression SlotDefinition path_rule range PathExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:PathExpression native linkml:PathExpression LinkML Source Direct name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slots: - followed_by - none_of - any_of - all_of - exactly_one_of - reversed - traverse - range_expression slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression Induced name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression attributes: followed_by: name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by owner: path_expression domain_of: - path_expression - path_expression range: path_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression reversed: name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed owner: path_expression domain_of: - path_expression range: boolean traverse: name: traverse description: the slot to traverse from_schema: https://w3id.org/linkml/meta rank: 1000 alias: traverse owner: path_expression domain_of: - path_expression range: slot_definition range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: path_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: path_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: path_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: path_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: path_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: path_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: path_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: path_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: path_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: path_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: path_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: path_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: path_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: path_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: path_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: path_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: path_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: path_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: path_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: path_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: path_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: PathExpression"},{"location":"PathExpression/#class-pathexpression","text":"An expression that describes an abstract path from an object to another through a sequence of slot lookups URI: linkml:PathExpression classDiagram class PathExpression Expression <|-- PathExpression Extensible <|-- PathExpression Annotatable <|-- PathExpression CommonMetadata <|-- PathExpression PathExpression : aliases PathExpression : all_of PathExpression : alt_descriptions PathExpression : annotations PathExpression : any_of PathExpression : broad_mappings PathExpression : close_mappings PathExpression : comments PathExpression : deprecated PathExpression : deprecated_element_has_exact_replacement PathExpression : deprecated_element_has_possible_replacement PathExpression : description PathExpression : exact_mappings PathExpression : exactly_one_of PathExpression : examples PathExpression : extensions PathExpression : followed_by PathExpression : from_schema PathExpression : imported_from PathExpression : in_language PathExpression : in_subset PathExpression : mappings PathExpression : narrow_mappings PathExpression : none_of PathExpression : notes PathExpression : range_expression PathExpression : rank PathExpression : related_mappings PathExpression : reversed PathExpression : see_also PathExpression : source PathExpression : structured_aliases PathExpression : title PathExpression : todos PathExpression : traverse","title":"Class: PathExpression"},{"location":"PathExpression/#inheritance","text":"PathExpression [ Expression Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"PathExpression/#slots","text":"Name Cardinality and Range Description Inheritance followed_by 0..1 Expression in a sequential list, this indicates the next member direct none_of 0..* Expression holds if none of the expressions hold direct any_of 0..* Expression holds if at least one of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct reversed 0..1 Boolean true if the slot is to be inversed direct traverse 0..1 SlotDefinition the slot to traverse direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"PathExpression/#usages","text":"used by used in type used PathExpression followed_by range PathExpression PathExpression none_of range PathExpression PathExpression any_of range PathExpression PathExpression all_of range PathExpression PathExpression exactly_one_of range PathExpression SlotDefinition path_rule range PathExpression","title":"Usages"},{"location":"PathExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PathExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PathExpression/#mappings","text":"Mapping Type Mapped Value self linkml:PathExpression native linkml:PathExpression","title":"Mappings"},{"location":"PathExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"PathExpression/#direct","text":"name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slots: - followed_by - none_of - any_of - all_of - exactly_one_of - reversed - traverse - range_expression slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression","title":"Direct"},{"location":"PathExpression/#induced","text":"name: path_expression description: An expression that describes an abstract path from an object to another through a sequence of slot lookups from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata status: testing slot_usage: followed_by: name: followed_by domain_of: - path_expression - path_expression range: path_expression any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression attributes: followed_by: name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by owner: path_expression domain_of: - path_expression - path_expression range: path_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: path_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: path_expression reversed: name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed owner: path_expression domain_of: - path_expression range: boolean traverse: name: traverse description: the slot to traverse from_schema: https://w3id.org/linkml/meta rank: 1000 alias: traverse owner: path_expression domain_of: - path_expression range: slot_definition range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: path_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: path_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: path_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: path_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: path_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: path_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: path_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: path_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: path_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: path_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: path_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: path_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: path_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: path_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: path_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: path_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: path_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: path_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: path_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: path_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: path_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: path_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: path_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"PatternExpression/","text":"Class: PatternExpression a regular expression pattern used to evaluate conformance of a string URI: linkml:PatternExpression classDiagram class PatternExpression Extensible <|-- PatternExpression Annotatable <|-- PatternExpression CommonMetadata <|-- PatternExpression PatternExpression : aliases PatternExpression : alt_descriptions PatternExpression : annotations PatternExpression : broad_mappings PatternExpression : close_mappings PatternExpression : comments PatternExpression : deprecated PatternExpression : deprecated_element_has_exact_replacement PatternExpression : deprecated_element_has_possible_replacement PatternExpression : description PatternExpression : exact_mappings PatternExpression : examples PatternExpression : extensions PatternExpression : from_schema PatternExpression : imported_from PatternExpression : in_language PatternExpression : in_subset PatternExpression : interpolated PatternExpression : mappings PatternExpression : narrow_mappings PatternExpression : notes PatternExpression : partial_match PatternExpression : rank PatternExpression : related_mappings PatternExpression : see_also PatternExpression : source PatternExpression : structured_aliases PatternExpression : syntax PatternExpression : title PatternExpression : todos Inheritance PatternExpression [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance syntax 0..1 String the string value of the slot must conform to this regular expression expresse... direct interpolated 0..1 Boolean if true then the pattern is first string interpolated direct partial_match 0..1 Boolean if true then the pattern must match the whole string, as if enclosed in ^ direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used TypeExpression structured_pattern range PatternExpression AnonymousTypeExpression structured_pattern range PatternExpression TypeDefinition structured_pattern range PatternExpression SlotExpression structured_pattern range PatternExpression AnonymousSlotExpression structured_pattern range PatternExpression SlotDefinition structured_pattern range PatternExpression PatternExpression syntax domain PatternExpression PatternExpression interpolated domain PatternExpression PatternExpression partial_match domain PatternExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:PatternExpression native linkml:PatternExpression LinkML Source Direct name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata slots: - syntax - interpolated - partial_match Induced name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata attributes: syntax: name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax owner: pattern_expression domain_of: - pattern_expression range: string interpolated: name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated owner: pattern_expression domain_of: - pattern_expression range: boolean partial_match: name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: partial_match owner: pattern_expression domain_of: - pattern_expression range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: pattern_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: pattern_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: pattern_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: pattern_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: pattern_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: pattern_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: pattern_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: pattern_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: pattern_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: pattern_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: pattern_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: pattern_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: pattern_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: pattern_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: pattern_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: pattern_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: pattern_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: pattern_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: pattern_expression domain_of: - common_metadata - class_rule range: integer","title":"Class: PatternExpression"},{"location":"PatternExpression/#class-patternexpression","text":"a regular expression pattern used to evaluate conformance of a string URI: linkml:PatternExpression classDiagram class PatternExpression Extensible <|-- PatternExpression Annotatable <|-- PatternExpression CommonMetadata <|-- PatternExpression PatternExpression : aliases PatternExpression : alt_descriptions PatternExpression : annotations PatternExpression : broad_mappings PatternExpression : close_mappings PatternExpression : comments PatternExpression : deprecated PatternExpression : deprecated_element_has_exact_replacement PatternExpression : deprecated_element_has_possible_replacement PatternExpression : description PatternExpression : exact_mappings PatternExpression : examples PatternExpression : extensions PatternExpression : from_schema PatternExpression : imported_from PatternExpression : in_language PatternExpression : in_subset PatternExpression : interpolated PatternExpression : mappings PatternExpression : narrow_mappings PatternExpression : notes PatternExpression : partial_match PatternExpression : rank PatternExpression : related_mappings PatternExpression : see_also PatternExpression : source PatternExpression : structured_aliases PatternExpression : syntax PatternExpression : title PatternExpression : todos","title":"Class: PatternExpression"},{"location":"PatternExpression/#inheritance","text":"PatternExpression [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"PatternExpression/#slots","text":"Name Cardinality and Range Description Inheritance syntax 0..1 String the string value of the slot must conform to this regular expression expresse... direct interpolated 0..1 Boolean if true then the pattern is first string interpolated direct partial_match 0..1 Boolean if true then the pattern must match the whole string, as if enclosed in ^ direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"PatternExpression/#usages","text":"used by used in type used TypeExpression structured_pattern range PatternExpression AnonymousTypeExpression structured_pattern range PatternExpression TypeDefinition structured_pattern range PatternExpression SlotExpression structured_pattern range PatternExpression AnonymousSlotExpression structured_pattern range PatternExpression SlotDefinition structured_pattern range PatternExpression PatternExpression syntax domain PatternExpression PatternExpression interpolated domain PatternExpression PatternExpression partial_match domain PatternExpression","title":"Usages"},{"location":"PatternExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PatternExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PatternExpression/#mappings","text":"Mapping Type Mapped Value self linkml:PatternExpression native linkml:PatternExpression","title":"Mappings"},{"location":"PatternExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"PatternExpression/#direct","text":"name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata slots: - syntax - interpolated - partial_match","title":"Direct"},{"location":"PatternExpression/#induced","text":"name: pattern_expression description: a regular expression pattern used to evaluate conformance of a string from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - extensible - annotatable - common_metadata attributes: syntax: name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax owner: pattern_expression domain_of: - pattern_expression range: string interpolated: name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated owner: pattern_expression domain_of: - pattern_expression range: boolean partial_match: name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: partial_match owner: pattern_expression domain_of: - pattern_expression range: boolean extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: pattern_expression domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: pattern_expression domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: pattern_expression domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: pattern_expression domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: pattern_expression domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: pattern_expression domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: pattern_expression domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: pattern_expression domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: pattern_expression domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: pattern_expression domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: pattern_expression domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: pattern_expression domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: pattern_expression domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: pattern_expression domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: pattern_expression domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: pattern_expression domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: pattern_expression domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: pattern_expression domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: pattern_expression domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: pattern_expression domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: pattern_expression domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"PermissibleValue/","text":"Class: PermissibleValue a permissible value, accompanied by intended text and an optional mapping to a concept URI URI: linkml:PermissibleValue classDiagram class PermissibleValue Extensible <|-- PermissibleValue Annotatable <|-- PermissibleValue CommonMetadata <|-- PermissibleValue PermissibleValue : aliases PermissibleValue : alt_descriptions PermissibleValue : annotations PermissibleValue : broad_mappings PermissibleValue : close_mappings PermissibleValue : comments PermissibleValue : deprecated PermissibleValue : deprecated_element_has_exact_replacement PermissibleValue : deprecated_element_has_possible_replacement PermissibleValue : description PermissibleValue : exact_mappings PermissibleValue : examples PermissibleValue : extensions PermissibleValue : from_schema PermissibleValue : imported_from PermissibleValue : in_language PermissibleValue : in_subset PermissibleValue : mappings PermissibleValue : meaning PermissibleValue : narrow_mappings PermissibleValue : notes PermissibleValue : rank PermissibleValue : related_mappings PermissibleValue : see_also PermissibleValue : source PermissibleValue : structured_aliases PermissibleValue : text PermissibleValue : title PermissibleValue : todos PermissibleValue : unit Inheritance PermissibleValue [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance text 1..1 String direct description 0..1 recommended String a description of the element's purpose and use direct meaning 0..1 Uriorcurie the value meaning of a permissible value direct unit 0..1 UnitOfMeasure an encoding of a unit direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used EnumExpression permissible_values range PermissibleValue AnonymousEnumExpression permissible_values range PermissibleValue EnumDefinition permissible_values range PermissibleValue PermissibleValue text domain PermissibleValue PermissibleValue meaning domain PermissibleValue Aliases PV Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:PermissibleValue native linkml:PermissibleValue close skos:Concept LinkML Source Direct name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slots: - text - description - meaning - unit slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value Induced name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value attributes: text: name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text owner: permissible_value domain_of: - permissible_value range: string description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: permissible_value domain_of: - common_metadata - permissible_value range: string recommended: true meaning: name: meaning description: the value meaning of a permissible value notes: - we may want to change the range of this (and other) elements in the model to an entitydescription type construct in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/ISO/IEC_11179 aliases: - PV meaning rank: 23 domain: permissible_value alias: meaning owner: permissible_value domain_of: - permissible_value range: uriorcurie unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: permissible_value domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: permissible_value domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: permissible_value domain_of: - annotatable - annotation range: annotation inlined: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: permissible_value domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: permissible_value domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: permissible_value domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: permissible_value domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: permissible_value domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: permissible_value domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: permissible_value domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: permissible_value domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: permissible_value domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: permissible_value domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: permissible_value domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: permissible_value domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: permissible_value domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: permissible_value domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: permissible_value domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: permissible_value domain_of: - common_metadata - class_rule range: integer","title":"Class: PermissibleValue"},{"location":"PermissibleValue/#class-permissiblevalue","text":"a permissible value, accompanied by intended text and an optional mapping to a concept URI URI: linkml:PermissibleValue classDiagram class PermissibleValue Extensible <|-- PermissibleValue Annotatable <|-- PermissibleValue CommonMetadata <|-- PermissibleValue PermissibleValue : aliases PermissibleValue : alt_descriptions PermissibleValue : annotations PermissibleValue : broad_mappings PermissibleValue : close_mappings PermissibleValue : comments PermissibleValue : deprecated PermissibleValue : deprecated_element_has_exact_replacement PermissibleValue : deprecated_element_has_possible_replacement PermissibleValue : description PermissibleValue : exact_mappings PermissibleValue : examples PermissibleValue : extensions PermissibleValue : from_schema PermissibleValue : imported_from PermissibleValue : in_language PermissibleValue : in_subset PermissibleValue : mappings PermissibleValue : meaning PermissibleValue : narrow_mappings PermissibleValue : notes PermissibleValue : rank PermissibleValue : related_mappings PermissibleValue : see_also PermissibleValue : source PermissibleValue : structured_aliases PermissibleValue : text PermissibleValue : title PermissibleValue : todos PermissibleValue : unit","title":"Class: PermissibleValue"},{"location":"PermissibleValue/#inheritance","text":"PermissibleValue [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"PermissibleValue/#slots","text":"Name Cardinality and Range Description Inheritance text 1..1 String direct description 0..1 recommended String a description of the element's purpose and use direct meaning 0..1 Uriorcurie the value meaning of a permissible value direct unit 0..1 UnitOfMeasure an encoding of a unit direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"PermissibleValue/#usages","text":"used by used in type used EnumExpression permissible_values range PermissibleValue AnonymousEnumExpression permissible_values range PermissibleValue EnumDefinition permissible_values range PermissibleValue PermissibleValue text domain PermissibleValue PermissibleValue meaning domain PermissibleValue","title":"Usages"},{"location":"PermissibleValue/#aliases","text":"PV","title":"Aliases"},{"location":"PermissibleValue/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PermissibleValue/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PermissibleValue/#mappings","text":"Mapping Type Mapped Value self linkml:PermissibleValue native linkml:PermissibleValue close skos:Concept","title":"Mappings"},{"location":"PermissibleValue/#linkml-source","text":"","title":"LinkML Source"},{"location":"PermissibleValue/#direct","text":"name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slots: - text - description - meaning - unit slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value","title":"Direct"},{"location":"PermissibleValue/#induced","text":"name: permissible_value description: a permissible value, accompanied by intended text and an optional mapping to a concept URI in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - PV close_mappings: - skos:Concept rank: 16 mixins: - extensible - annotatable - common_metadata slot_usage: is_a: name: is_a range: permissible_value mixins: name: mixins range: permissible_value attributes: text: name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text owner: permissible_value domain_of: - permissible_value range: string description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: permissible_value domain_of: - common_metadata - permissible_value range: string recommended: true meaning: name: meaning description: the value meaning of a permissible value notes: - we may want to change the range of this (and other) elements in the model to an entitydescription type construct in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/ISO/IEC_11179 aliases: - PV meaning rank: 23 domain: permissible_value alias: meaning owner: permissible_value domain_of: - permissible_value range: uriorcurie unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: permissible_value domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: permissible_value domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: permissible_value domain_of: - annotatable - annotation range: annotation inlined: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: permissible_value domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: permissible_value domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: permissible_value domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: permissible_value domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: permissible_value domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: permissible_value domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: permissible_value domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: permissible_value domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: permissible_value domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: permissible_value domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: permissible_value domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: permissible_value domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: permissible_value domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: permissible_value domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: permissible_value domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: permissible_value domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: permissible_value domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: permissible_value domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Prefix/","text":"Class: Prefix prefix URI tuple URI: linkml:Prefix classDiagram class Prefix Prefix : prefix_prefix Prefix : prefix_reference Slots Name Cardinality and Range Description Inheritance prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) direct prefix_reference 1..1 Uri A URI associated with a given prefix direct Usages used by used in type used SchemaDefinition prefixes range Prefix Prefix prefix_prefix domain Prefix Prefix prefix_reference domain Prefix Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Prefix native linkml:Prefix LinkML Source Direct name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 slots: - prefix_prefix - prefix_reference Induced name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 attributes: prefix_prefix: name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix owner: prefix domain_of: - prefix range: ncname prefix_reference: name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference owner: prefix domain_of: - prefix range: uri required: true","title":"Class: Prefix"},{"location":"Prefix/#class-prefix","text":"prefix URI tuple URI: linkml:Prefix classDiagram class Prefix Prefix : prefix_prefix Prefix : prefix_reference","title":"Class: Prefix"},{"location":"Prefix/#slots","text":"Name Cardinality and Range Description Inheritance prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) direct prefix_reference 1..1 Uri A URI associated with a given prefix direct","title":"Slots"},{"location":"Prefix/#usages","text":"used by used in type used SchemaDefinition prefixes range Prefix Prefix prefix_prefix domain Prefix Prefix prefix_reference domain Prefix","title":"Usages"},{"location":"Prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Prefix/#mappings","text":"Mapping Type Mapped Value self linkml:Prefix native linkml:Prefix","title":"Mappings"},{"location":"Prefix/#linkml-source","text":"","title":"LinkML Source"},{"location":"Prefix/#direct","text":"name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 slots: - prefix_prefix - prefix_reference","title":"Direct"},{"location":"Prefix/#induced","text":"name: prefix description: prefix URI tuple in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 12 attributes: prefix_prefix: name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix owner: prefix domain_of: - prefix range: ncname prefix_reference: name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference owner: prefix domain_of: - prefix range: uri required: true","title":"Induced"},{"location":"PresenceEnum/","text":"Enum: PresenceEnum enumeration of conditions by which a slot value should be set URI: PresenceEnum Permissible Values Value Meaning Description UNCOMMITTED None PRESENT None ABSENT None Slots Name Description value_presence if true then a value must be present (for lists there must be at least one va... Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: presence_enum description: enumeration of conditions by which a slot value should be set from_schema: https://w3id.org/linkml/meta rank: 11 permissible_values: UNCOMMITTED: text: UNCOMMITTED PRESENT: text: PRESENT ABSENT: text: ABSENT","title":"Enum: PresenceEnum"},{"location":"PresenceEnum/#enum-presenceenum","text":"enumeration of conditions by which a slot value should be set URI: PresenceEnum","title":"Enum: PresenceEnum"},{"location":"PresenceEnum/#permissible-values","text":"Value Meaning Description UNCOMMITTED None PRESENT None ABSENT None","title":"Permissible Values"},{"location":"PresenceEnum/#slots","text":"Name Description value_presence if true then a value must be present (for lists there must be at least one va...","title":"Slots"},{"location":"PresenceEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PresenceEnum/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PresenceEnum/#linkml-source","text":"name: presence_enum description: enumeration of conditions by which a slot value should be set from_schema: https://w3id.org/linkml/meta rank: 11 permissible_values: UNCOMMITTED: text: UNCOMMITTED PRESENT: text: PRESENT ABSENT: text: ABSENT","title":"LinkML Source"},{"location":"PvFormulaOptions/","text":"Enum: PvFormulaOptions The formula used to generate the set of permissible values from the code_set values URI: PvFormulaOptions Permissible Values Value Meaning Description CODE None The permissible values are the set of possible codes in the code set CURIE None The permissible values are the set of CURIES in the code set URI None The permissible values are the set of code URIs in the code set FHIR_CODING None The permissible values are the set of FHIR coding elements derived from the c... Slots Name Description pv_formula Defines the specific formula to be used to generate the permissible values Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: pv_formula_options description: The formula used to generate the set of permissible values from the code_set values in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 permissible_values: CODE: text: CODE description: The permissible values are the set of possible codes in the code set CURIE: text: CURIE description: The permissible values are the set of CURIES in the code set URI: text: URI description: The permissible values are the set of code URIs in the code set FHIR_CODING: text: FHIR_CODING description: The permissible values are the set of FHIR coding elements derived from the code set","title":"Enum: PvFormulaOptions"},{"location":"PvFormulaOptions/#enum-pvformulaoptions","text":"The formula used to generate the set of permissible values from the code_set values URI: PvFormulaOptions","title":"Enum: PvFormulaOptions"},{"location":"PvFormulaOptions/#permissible-values","text":"Value Meaning Description CODE None The permissible values are the set of possible codes in the code set CURIE None The permissible values are the set of CURIES in the code set URI None The permissible values are the set of code URIs in the code set FHIR_CODING None The permissible values are the set of FHIR coding elements derived from the c...","title":"Permissible Values"},{"location":"PvFormulaOptions/#slots","text":"Name Description pv_formula Defines the specific formula to be used to generate the permissible values","title":"Slots"},{"location":"PvFormulaOptions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"PvFormulaOptions/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"PvFormulaOptions/#linkml-source","text":"name: pv_formula_options description: The formula used to generate the set of permissible values from the code_set values in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 permissible_values: CODE: text: CODE description: The permissible values are the set of possible codes in the code set CURIE: text: CURIE description: The permissible values are the set of CURIES in the code set URI: text: URI description: The permissible values are the set of code URIs in the code set FHIR_CODING: text: FHIR_CODING description: The permissible values are the set of FHIR coding elements derived from the code set","title":"LinkML Source"},{"location":"ReachabilityQuery/","text":"Class: ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types URI: linkml:ReachabilityQuery classDiagram class ReachabilityQuery ReachabilityQuery : include_self ReachabilityQuery : is_direct ReachabilityQuery : relationship_types ReachabilityQuery : source_nodes ReachabilityQuery : source_ontology ReachabilityQuery : traverse_up Slots Name Cardinality and Range Description Inheritance source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... direct source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query direct relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... direct is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... direct include_self 0..1 Boolean True if the query is reflexive direct traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are... direct Usages used by used in type used EnumExpression reachable_from range ReachabilityQuery AnonymousEnumExpression reachable_from range ReachabilityQuery EnumDefinition reachable_from range ReachabilityQuery ReachabilityQuery source_nodes domain ReachabilityQuery ReachabilityQuery relationship_types domain ReachabilityQuery ReachabilityQuery is_direct domain ReachabilityQuery ReachabilityQuery include_self domain ReachabilityQuery ReachabilityQuery traverse_up domain ReachabilityQuery Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:ReachabilityQuery native linkml:ReachabilityQuery LinkML Source Direct name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - source_ontology - source_nodes - relationship_types - is_direct - include_self - traverse_up Induced name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: source_ontology: name: source_ontology description: An ontology or vocabulary or terminology that is used in a query to obtain a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - terminology - vocabulary rank: 1000 alias: source_ontology owner: reachability_query domain_of: - match_query - reachability_query range: uriorcurie source_nodes: name: source_nodes description: A list of nodes that are used in the reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: reachability_query multivalued: true alias: source_nodes owner: reachability_query domain_of: - reachability_query range: uriorcurie relationship_types: name: relationship_types description: A list of relationship types (properties) that are used in a reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - predicates - properties rank: 1000 domain: reachability_query multivalued: true alias: relationship_types owner: reachability_query domain_of: - reachability_query range: uriorcurie is_direct: name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct owner: reachability_query domain_of: - reachability_query range: boolean include_self: name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self owner: reachability_query domain_of: - reachability_query range: boolean traverse_up: name: traverse_up description: True if the direction of the reachability query is reversed and ancestors are retrieved in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - ancestors rank: 1000 domain: reachability_query alias: traverse_up owner: reachability_query domain_of: - reachability_query range: boolean","title":"Class: ReachabilityQuery"},{"location":"ReachabilityQuery/#class-reachabilityquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types URI: linkml:ReachabilityQuery classDiagram class ReachabilityQuery ReachabilityQuery : include_self ReachabilityQuery : is_direct ReachabilityQuery : relationship_types ReachabilityQuery : source_nodes ReachabilityQuery : source_ontology ReachabilityQuery : traverse_up","title":"Class: ReachabilityQuery"},{"location":"ReachabilityQuery/#slots","text":"Name Cardinality and Range Description Inheritance source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... direct source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query direct relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... direct is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... direct include_self 0..1 Boolean True if the query is reflexive direct traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are... direct","title":"Slots"},{"location":"ReachabilityQuery/#usages","text":"used by used in type used EnumExpression reachable_from range ReachabilityQuery AnonymousEnumExpression reachable_from range ReachabilityQuery EnumDefinition reachable_from range ReachabilityQuery ReachabilityQuery source_nodes domain ReachabilityQuery ReachabilityQuery relationship_types domain ReachabilityQuery ReachabilityQuery is_direct domain ReachabilityQuery ReachabilityQuery include_self domain ReachabilityQuery ReachabilityQuery traverse_up domain ReachabilityQuery","title":"Usages"},{"location":"ReachabilityQuery/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ReachabilityQuery/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ReachabilityQuery/#mappings","text":"Mapping Type Mapped Value self linkml:ReachabilityQuery native linkml:ReachabilityQuery","title":"Mappings"},{"location":"ReachabilityQuery/#linkml-source","text":"","title":"LinkML Source"},{"location":"ReachabilityQuery/#direct","text":"name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - source_ontology - source_nodes - relationship_types - is_direct - include_self - traverse_up","title":"Direct"},{"location":"ReachabilityQuery/#induced","text":"name: reachability_query description: A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: source_ontology: name: source_ontology description: An ontology or vocabulary or terminology that is used in a query to obtain a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - terminology - vocabulary rank: 1000 alias: source_ontology owner: reachability_query domain_of: - match_query - reachability_query range: uriorcurie source_nodes: name: source_nodes description: A list of nodes that are used in the reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: reachability_query multivalued: true alias: source_nodes owner: reachability_query domain_of: - reachability_query range: uriorcurie relationship_types: name: relationship_types description: A list of relationship types (properties) that are used in a reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - predicates - properties rank: 1000 domain: reachability_query multivalued: true alias: relationship_types owner: reachability_query domain_of: - reachability_query range: uriorcurie is_direct: name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct owner: reachability_query domain_of: - reachability_query range: boolean include_self: name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self owner: reachability_query domain_of: - reachability_query range: boolean traverse_up: name: traverse_up description: True if the direction of the reachability query is reversed and ancestors are retrieved in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - ancestors rank: 1000 domain: reachability_query alias: traverse_up owner: reachability_query domain_of: - reachability_query range: boolean","title":"Induced"},{"location":"RelationalModel/","text":"RelationalModel The set of constructs that have an equivalent in the classic relational mode as defined by Codd URI: RelationalModel Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta","title":"RelationalModel"},{"location":"RelationalModel/#relationalmodel","text":"The set of constructs that have an equivalent in the classic relational mode as defined by Codd URI: RelationalModel","title":"RelationalModel"},{"location":"RelationalModel/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"RelationalModel/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"RelationalModelProfile/","text":"Subset: RelationalModelProfile _A profile that includes all the metamodel elements whose semantics can be expressed using the classic Relational Model. The Relational Model excludes collections (multivalued slots) as first class entities. Instead, these must be mapped to backreferences The classic Relational Model excludes inheritance and polymorphism -- these must be rolled down to concrete classes or otherwise transformed._ URI: RelationalModelProfile Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... UniqueKey a collection of slots whose values uniquely identify an instance of a class SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema ClassDefinition an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier attributes 0..* SlotDefinition Inline definition of slots unique_keys 0..* UniqueKey A collection of unique keys for this class EnumDefinition an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier UniqueKey a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key Slots in subset Slot Description name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema identifier True means that the key slot(s) uniquely identify the container required true means that the slot must be present in the loaded definition attributes Inline definition of slots unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key range defines the type of the object of the slot key True means that the key slot(s) uniquely identify the container Enumerations in subset Enumeration Description","title":"RelationalModelProfile"},{"location":"RelationalModelProfile/#subset-relationalmodelprofile","text":"_A profile that includes all the metamodel elements whose semantics can be expressed using the classic Relational Model. The Relational Model excludes collections (multivalued slots) as first class entities. Instead, these must be mapped to backreferences The classic Relational Model excludes inheritance and polymorphism -- these must be rolled down to concrete classes or otherwise transformed._ URI: RelationalModelProfile","title":"Subset: RelationalModelProfile"},{"location":"RelationalModelProfile/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"RelationalModelProfile/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"RelationalModelProfile/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Classes in subset"},{"location":"RelationalModelProfile/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema","title":"SchemaDefinition"},{"location":"RelationalModelProfile/#classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier attributes 0..* SlotDefinition Inline definition of slots unique_keys 0..* UniqueKey A collection of unique keys for this class","title":"ClassDefinition"},{"location":"RelationalModelProfile/#enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier","title":"EnumDefinition"},{"location":"RelationalModelProfile/#uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key","title":"UniqueKey"},{"location":"RelationalModelProfile/#slots-in-subset","text":"Slot Description name the unique name of the element within the context of the schema classes An index to the collection of all class definitions in the schema identifier True means that the key slot(s) uniquely identify the container required true means that the slot must be present in the loaded definition attributes Inline definition of slots unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key range defines the type of the object of the slot key True means that the key slot(s) uniquely identify the container","title":"Slots in subset"},{"location":"RelationalModelProfile/#enumerations-in-subset","text":"Enumeration Description","title":"Enumerations in subset"},{"location":"RelationalRoleEnum/","text":"Enum: RelationalRoleEnum enumeration of roles a slot on a relationship class can play URI: RelationalRoleEnum Permissible Values Value Meaning Description SUBJECT rdf:subject a slot with this role connects a relationship to its subject/source node OBJECT rdf:object a slot with this role connects a relationship to its object/target node PREDICATE rdf:predicate a slot with this role connects a relationship to its predicate/property NODE None a slot with this role connects a symmetric relationship to a node that repres... OTHER_ROLE None a slot with this role connects a relationship to a node that is not subject/o... Slots Name Description relational_role the role a slot on a relationship class plays, for example, the subject, obje... Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: relational_role_enum description: enumeration of roles a slot on a relationship class can play from_schema: https://w3id.org/linkml/meta rank: 3 permissible_values: SUBJECT: text: SUBJECT description: a slot with this role connects a relationship to its subject/source node meaning: rdf:subject OBJECT: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: rdf:object PREDICATE: text: PREDICATE description: a slot with this role connects a relationship to its predicate/property meaning: rdf:predicate NODE: text: NODE description: a slot with this role connects a symmetric relationship to a node that represents either subject or object node OTHER_ROLE: text: OTHER_ROLE description: a slot with this role connects a relationship to a node that is not subject/object/predicate","title":"Enum: RelationalRoleEnum"},{"location":"RelationalRoleEnum/#enum-relationalroleenum","text":"enumeration of roles a slot on a relationship class can play URI: RelationalRoleEnum","title":"Enum: RelationalRoleEnum"},{"location":"RelationalRoleEnum/#permissible-values","text":"Value Meaning Description SUBJECT rdf:subject a slot with this role connects a relationship to its subject/source node OBJECT rdf:object a slot with this role connects a relationship to its object/target node PREDICATE rdf:predicate a slot with this role connects a relationship to its predicate/property NODE None a slot with this role connects a symmetric relationship to a node that repres... OTHER_ROLE None a slot with this role connects a relationship to a node that is not subject/o...","title":"Permissible Values"},{"location":"RelationalRoleEnum/#slots","text":"Name Description relational_role the role a slot on a relationship class plays, for example, the subject, obje...","title":"Slots"},{"location":"RelationalRoleEnum/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"RelationalRoleEnum/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"RelationalRoleEnum/#linkml-source","text":"name: relational_role_enum description: enumeration of roles a slot on a relationship class can play from_schema: https://w3id.org/linkml/meta rank: 3 permissible_values: SUBJECT: text: SUBJECT description: a slot with this role connects a relationship to its subject/source node meaning: rdf:subject OBJECT: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: rdf:object PREDICATE: text: PREDICATE description: a slot with this role connects a relationship to its predicate/property meaning: rdf:predicate NODE: text: NODE description: a slot with this role connects a symmetric relationship to a node that represents either subject or object node OTHER_ROLE: text: OTHER_ROLE description: a slot with this role connects a relationship to a node that is not subject/object/predicate","title":"LinkML Source"},{"location":"SchemaDefinition/","text":"Class: SchemaDefinition a collection of subset, type, slot and class definitions URI: linkml:SchemaDefinition classDiagram class SchemaDefinition Element <|-- SchemaDefinition SchemaDefinition : aliases SchemaDefinition : alt_descriptions SchemaDefinition : annotations SchemaDefinition : broad_mappings SchemaDefinition : categories SchemaDefinition : classes SchemaDefinition : close_mappings SchemaDefinition : comments SchemaDefinition : conforms_to SchemaDefinition : default_curi_maps SchemaDefinition : default_prefix SchemaDefinition : default_range SchemaDefinition : definition_uri SchemaDefinition : deprecated SchemaDefinition : deprecated_element_has_exact_replacement SchemaDefinition : deprecated_element_has_possible_replacement SchemaDefinition : description SchemaDefinition : emit_prefixes SchemaDefinition : enums SchemaDefinition : exact_mappings SchemaDefinition : examples SchemaDefinition : extensions SchemaDefinition : from_schema SchemaDefinition : generation_date SchemaDefinition : id SchemaDefinition : id_prefixes SchemaDefinition : imported_from SchemaDefinition : imports SchemaDefinition : in_language SchemaDefinition : in_subset SchemaDefinition : keywords SchemaDefinition : license SchemaDefinition : local_names SchemaDefinition : mappings SchemaDefinition : metamodel_version SchemaDefinition : name SchemaDefinition : narrow_mappings SchemaDefinition : notes SchemaDefinition : prefixes SchemaDefinition : rank SchemaDefinition : related_mappings SchemaDefinition : see_also SchemaDefinition : settings SchemaDefinition : slot_definitions SchemaDefinition : slot_names_unique SchemaDefinition : source SchemaDefinition : source_file SchemaDefinition : source_file_date SchemaDefinition : source_file_size SchemaDefinition : structured_aliases SchemaDefinition : subsets SchemaDefinition : title SchemaDefinition : todos SchemaDefinition : types SchemaDefinition : version Inheritance Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition Slots Name Cardinality and Range Description Inheritance id 1..1 Uri The official schema URI direct version 0..1 String particular version of schema direct imports 0..* Uriorcurie other schemas that are included in this schema direct license 0..1 String license for the schema direct prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... direct emit_prefixes 0..* Ncname a list of Curie prefixes that are used in the representation of instances of ... direct default_curi_maps 0..* String ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... direct default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab direct default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... direct subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema direct types 0..* TypeDefinition An index to the collection of all type definitions in the schema direct enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema direct slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema direct classes 0..* ClassDefinition An index to the collection of all class definitions in the schema direct metamodel_version 0..1 String Version of the metamodel used to load the schema direct source_file 0..1 String name, uri or description of the source of the schema direct source_file_date 0..1 Datetime modification date of the source of the schema direct source_file_size 0..1 Integer size in bytes of the source of the schema direct generation_date 0..1 Datetime date and time that the schema was loaded/generated direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct settings 0..* Setting A collection of global variable settings direct categories 0..* Uriorcurie controlled terms used to categorize an element direct keywords 0..* String Keywords or tags used to describe the element direct name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used SchemaDefinition id domain SchemaDefinition SchemaDefinition version domain SchemaDefinition SchemaDefinition imports domain SchemaDefinition SchemaDefinition license domain SchemaDefinition SchemaDefinition prefixes domain SchemaDefinition SchemaDefinition emit_prefixes domain SchemaDefinition SchemaDefinition default_curi_maps domain SchemaDefinition SchemaDefinition default_prefix domain SchemaDefinition SchemaDefinition default_range domain SchemaDefinition SchemaDefinition subsets domain SchemaDefinition SchemaDefinition types domain SchemaDefinition SchemaDefinition enums domain SchemaDefinition SchemaDefinition slot_definitions domain SchemaDefinition SchemaDefinition classes domain SchemaDefinition SchemaDefinition metamodel_version domain SchemaDefinition SchemaDefinition source_file domain SchemaDefinition SchemaDefinition source_file_date domain SchemaDefinition SchemaDefinition source_file_size domain SchemaDefinition SchemaDefinition generation_date domain SchemaDefinition SchemaDefinition settings domain SchemaDefinition Aliases data dictionary See Also https://en.wikipedia.org/wiki/Data_dictionary Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SchemaDefinition native linkml:SchemaDefinition close qb:ComponentSet LinkML Source Direct name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slots: - id - version - imports - license - prefixes - emit_prefixes - default_curi_maps - default_prefix - default_range - subsets - types - enums - slot_definitions - classes - metamodel_version - source_file - source_file_date - source_file_size - generation_date - slot_names_unique - settings - categories - keywords slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname tree_root: true Induced name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname attributes: id: name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id owner: schema_definition domain_of: - schema_definition range: uri required: true version: name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version owner: schema_definition domain_of: - schema_definition range: string imports: name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports owner: schema_definition domain_of: - schema_definition range: uriorcurie license: name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license owner: schema_definition domain_of: - schema_definition range: string prefixes: name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes owner: schema_definition domain_of: - schema_definition range: prefix inlined: true emit_prefixes: name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes owner: schema_definition domain_of: - schema_definition range: ncname default_curi_maps: name: default_curi_maps description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: default_curi_maps owner: schema_definition domain_of: - schema_definition range: string default_prefix: name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 11 domain: schema_definition ifabsent: default_ns alias: default_prefix owner: schema_definition domain_of: - schema_definition range: string default_range: name: default_range description: default slot range to be used if range element is omitted from a slot definition notes: - restricted to type definitions for the time being. Could be broadened if required in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 13 domain: schema_definition alias: default_range owner: schema_definition domain_of: - schema_definition range: type_definition subsets: name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets owner: schema_definition domain_of: - schema_definition range: subset_definition inlined: true types: name: types description: An index to the collection of all type definitions in the schema in_subset: - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 6 domain: schema_definition multivalued: true alias: types owner: schema_definition domain_of: - schema_definition range: type_definition inlined: true enums: name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums owner: schema_definition domain_of: - schema_definition range: enum_definition inlined: true slot_definitions: name: slot_definitions description: An index to the collection of all slot definitions in the schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 domain: schema_definition multivalued: true alias: slots owner: schema_definition domain_of: - schema_definition range: slot_definition inlined: true classes: name: classes description: An index to the collection of all class definitions in the schema in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 3 domain: schema_definition multivalued: true alias: classes owner: schema_definition domain_of: - schema_definition range: class_definition inlined: true metamodel_version: name: metamodel_version description: Version of the metamodel used to load the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: metamodel_version owner: schema_definition domain_of: - schema_definition range: string source_file: name: source_file description: name, uri or description of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: suppplied by the schema loader alias: source_file owner: schema_definition domain_of: - schema_definition range: string source_file_date: name: source_file_date description: modification date of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the loader alias: source_file_date owner: schema_definition domain_of: - schema_definition range: datetime source_file_size: name: source_file_size description: size in bytes of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: source_file_size owner: schema_definition domain_of: - schema_definition range: integer generation_date: name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date owner: schema_definition domain_of: - schema_definition range: datetime slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: schema_definition domain_of: - schema_definition - class_definition range: boolean settings: name: settings description: A collection of global variable settings comments: - global variables are used in string interpolation in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 20 domain: schema_definition multivalued: true alias: settings owner: schema_definition domain_of: - schema_definition range: setting inlined: true categories: name: categories description: controlled terms used to categorize an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: schema_definition domain_of: - schema_definition - structured_alias range: uriorcurie keywords: name: keywords description: Keywords or tags used to describe the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: keyword domain: element slot_uri: schema:keywords multivalued: true alias: keywords owner: schema_definition domain_of: - schema_definition range: string name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set from_schema: https://w3id.org/linkml/meta rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: schema_definition domain_of: - element - element range: ncname id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: schema_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: schema_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: schema_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: schema_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: schema_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: schema_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: schema_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: schema_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: schema_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: schema_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: schema_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: schema_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: schema_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: schema_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: schema_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: schema_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: schema_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: schema_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: schema_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: schema_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: schema_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: schema_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: schema_definition domain_of: - common_metadata - class_rule range: integer tree_root: true","title":"Class: SchemaDefinition"},{"location":"SchemaDefinition/#class-schemadefinition","text":"a collection of subset, type, slot and class definitions URI: linkml:SchemaDefinition classDiagram class SchemaDefinition Element <|-- SchemaDefinition SchemaDefinition : aliases SchemaDefinition : alt_descriptions SchemaDefinition : annotations SchemaDefinition : broad_mappings SchemaDefinition : categories SchemaDefinition : classes SchemaDefinition : close_mappings SchemaDefinition : comments SchemaDefinition : conforms_to SchemaDefinition : default_curi_maps SchemaDefinition : default_prefix SchemaDefinition : default_range SchemaDefinition : definition_uri SchemaDefinition : deprecated SchemaDefinition : deprecated_element_has_exact_replacement SchemaDefinition : deprecated_element_has_possible_replacement SchemaDefinition : description SchemaDefinition : emit_prefixes SchemaDefinition : enums SchemaDefinition : exact_mappings SchemaDefinition : examples SchemaDefinition : extensions SchemaDefinition : from_schema SchemaDefinition : generation_date SchemaDefinition : id SchemaDefinition : id_prefixes SchemaDefinition : imported_from SchemaDefinition : imports SchemaDefinition : in_language SchemaDefinition : in_subset SchemaDefinition : keywords SchemaDefinition : license SchemaDefinition : local_names SchemaDefinition : mappings SchemaDefinition : metamodel_version SchemaDefinition : name SchemaDefinition : narrow_mappings SchemaDefinition : notes SchemaDefinition : prefixes SchemaDefinition : rank SchemaDefinition : related_mappings SchemaDefinition : see_also SchemaDefinition : settings SchemaDefinition : slot_definitions SchemaDefinition : slot_names_unique SchemaDefinition : source SchemaDefinition : source_file SchemaDefinition : source_file_date SchemaDefinition : source_file_size SchemaDefinition : structured_aliases SchemaDefinition : subsets SchemaDefinition : title SchemaDefinition : todos SchemaDefinition : types SchemaDefinition : version","title":"Class: SchemaDefinition"},{"location":"SchemaDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] SchemaDefinition","title":"Inheritance"},{"location":"SchemaDefinition/#slots","text":"Name Cardinality and Range Description Inheritance id 1..1 Uri The official schema URI direct version 0..1 String particular version of schema direct imports 0..* Uriorcurie other schemas that are included in this schema direct license 0..1 String license for the schema direct prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... direct emit_prefixes 0..* Ncname a list of Curie prefixes that are used in the representation of instances of ... direct default_curi_maps 0..* String ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... direct default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab direct default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... direct subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema direct types 0..* TypeDefinition An index to the collection of all type definitions in the schema direct enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema direct slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema direct classes 0..* ClassDefinition An index to the collection of all class definitions in the schema direct metamodel_version 0..1 String Version of the metamodel used to load the schema direct source_file 0..1 String name, uri or description of the source of the schema direct source_file_date 0..1 Datetime modification date of the source of the schema direct source_file_size 0..1 Integer size in bytes of the source of the schema direct generation_date 0..1 Datetime date and time that the schema was loaded/generated direct slot_names_unique 0..1 Boolean if true then induced/mangled slot names are not created for class_usage and a... direct settings 0..* Setting A collection of global variable settings direct categories 0..* Uriorcurie controlled terms used to categorize an element direct keywords 0..* String Keywords or tags used to describe the element direct name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"SchemaDefinition/#usages","text":"used by used in type used SchemaDefinition id domain SchemaDefinition SchemaDefinition version domain SchemaDefinition SchemaDefinition imports domain SchemaDefinition SchemaDefinition license domain SchemaDefinition SchemaDefinition prefixes domain SchemaDefinition SchemaDefinition emit_prefixes domain SchemaDefinition SchemaDefinition default_curi_maps domain SchemaDefinition SchemaDefinition default_prefix domain SchemaDefinition SchemaDefinition default_range domain SchemaDefinition SchemaDefinition subsets domain SchemaDefinition SchemaDefinition types domain SchemaDefinition SchemaDefinition enums domain SchemaDefinition SchemaDefinition slot_definitions domain SchemaDefinition SchemaDefinition classes domain SchemaDefinition SchemaDefinition metamodel_version domain SchemaDefinition SchemaDefinition source_file domain SchemaDefinition SchemaDefinition source_file_date domain SchemaDefinition SchemaDefinition source_file_size domain SchemaDefinition SchemaDefinition generation_date domain SchemaDefinition SchemaDefinition settings domain SchemaDefinition","title":"Usages"},{"location":"SchemaDefinition/#aliases","text":"data dictionary","title":"Aliases"},{"location":"SchemaDefinition/#see-also","text":"https://en.wikipedia.org/wiki/Data_dictionary","title":"See Also"},{"location":"SchemaDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SchemaDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SchemaDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:SchemaDefinition native linkml:SchemaDefinition close qb:ComponentSet","title":"Mappings"},{"location":"SchemaDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"SchemaDefinition/#direct","text":"name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slots: - id - version - imports - license - prefixes - emit_prefixes - default_curi_maps - default_prefix - default_range - subsets - types - enums - slot_definitions - classes - metamodel_version - source_file - source_file_date - source_file_size - generation_date - slot_names_unique - settings - categories - keywords slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname tree_root: true","title":"Direct"},{"location":"SchemaDefinition/#induced","text":"name: schema_definition description: a collection of subset, type, slot and class definitions in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_dictionary aliases: - data dictionary close_mappings: - qb:ComponentSet rank: 1 is_a: element slot_usage: name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set domain_of: - element - element - element range: ncname attributes: id: name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id owner: schema_definition domain_of: - schema_definition range: uri required: true version: name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version owner: schema_definition domain_of: - schema_definition range: string imports: name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports owner: schema_definition domain_of: - schema_definition range: uriorcurie license: name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license owner: schema_definition domain_of: - schema_definition range: string prefixes: name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes owner: schema_definition domain_of: - schema_definition range: prefix inlined: true emit_prefixes: name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes owner: schema_definition domain_of: - schema_definition range: ncname default_curi_maps: name: default_curi_maps description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: default_curi_maps owner: schema_definition domain_of: - schema_definition range: string default_prefix: name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 11 domain: schema_definition ifabsent: default_ns alias: default_prefix owner: schema_definition domain_of: - schema_definition range: string default_range: name: default_range description: default slot range to be used if range element is omitted from a slot definition notes: - restricted to type definitions for the time being. Could be broadened if required in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 13 domain: schema_definition alias: default_range owner: schema_definition domain_of: - schema_definition range: type_definition subsets: name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets owner: schema_definition domain_of: - schema_definition range: subset_definition inlined: true types: name: types description: An index to the collection of all type definitions in the schema in_subset: - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 6 domain: schema_definition multivalued: true alias: types owner: schema_definition domain_of: - schema_definition range: type_definition inlined: true enums: name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums owner: schema_definition domain_of: - schema_definition range: enum_definition inlined: true slot_definitions: name: slot_definitions description: An index to the collection of all slot definitions in the schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 domain: schema_definition multivalued: true alias: slots owner: schema_definition domain_of: - schema_definition range: slot_definition inlined: true classes: name: classes description: An index to the collection of all class definitions in the schema in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 3 domain: schema_definition multivalued: true alias: classes owner: schema_definition domain_of: - schema_definition range: class_definition inlined: true metamodel_version: name: metamodel_version description: Version of the metamodel used to load the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: metamodel_version owner: schema_definition domain_of: - schema_definition range: string source_file: name: source_file description: name, uri or description of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: suppplied by the schema loader alias: source_file owner: schema_definition domain_of: - schema_definition range: string source_file_date: name: source_file_date description: modification date of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the loader alias: source_file_date owner: schema_definition domain_of: - schema_definition range: datetime source_file_size: name: source_file_size description: size in bytes of the source of the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: source_file_size owner: schema_definition domain_of: - schema_definition range: integer generation_date: name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date owner: schema_definition domain_of: - schema_definition range: datetime slot_names_unique: name: slot_names_unique description: if true then induced/mangled slot names are not created for class_usage and attributes from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: slot_names_unique owner: schema_definition domain_of: - schema_definition - class_definition range: boolean settings: name: settings description: A collection of global variable settings comments: - global variables are used in string interpolation in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 20 domain: schema_definition multivalued: true alias: settings owner: schema_definition domain_of: - schema_definition range: setting inlined: true categories: name: categories description: controlled terms used to categorize an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: schema_definition domain_of: - schema_definition - structured_alias range: uriorcurie keywords: name: keywords description: Keywords or tags used to describe the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: keyword domain: element slot_uri: schema:keywords multivalued: true alias: keywords owner: schema_definition domain_of: - schema_definition range: string name: name: name description: a unique name for the schema that is both human-readable and consists of only characters from the NCName set from_schema: https://w3id.org/linkml/meta rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: schema_definition domain_of: - element - element range: ncname id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: schema_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: schema_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: schema_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: schema_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: schema_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: schema_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: schema_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: schema_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: schema_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: schema_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: schema_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: schema_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: schema_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: schema_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: schema_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: schema_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: schema_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: schema_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: schema_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: schema_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: schema_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: schema_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: schema_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: schema_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: schema_definition domain_of: - common_metadata - class_rule range: integer tree_root: true","title":"Induced"},{"location":"Setting/","text":"Class: Setting assignment of a key to a value URI: linkml:Setting classDiagram class Setting Setting : setting_key Setting : setting_value Slots Name Cardinality and Range Description Inheritance setting_key 0..1 Ncname the variable name for a setting direct setting_value 1..1 String The value assigned for a setting direct Usages used by used in type used SchemaDefinition settings range Setting ImportExpression import_map range Setting Setting setting_key domain Setting Setting setting_value domain Setting Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:Setting native linkml:Setting LinkML Source Direct name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - setting_key - setting_value Induced name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: setting_key: name: setting_key description: the variable name for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting key: true alias: setting_key owner: setting domain_of: - setting range: ncname setting_value: name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value owner: setting domain_of: - setting range: string required: true","title":"Class: Setting"},{"location":"Setting/#class-setting","text":"assignment of a key to a value URI: linkml:Setting classDiagram class Setting Setting : setting_key Setting : setting_value","title":"Class: Setting"},{"location":"Setting/#slots","text":"Name Cardinality and Range Description Inheritance setting_key 0..1 Ncname the variable name for a setting direct setting_value 1..1 String The value assigned for a setting direct","title":"Slots"},{"location":"Setting/#usages","text":"used by used in type used SchemaDefinition settings range Setting ImportExpression import_map range Setting Setting setting_key domain Setting Setting setting_value domain Setting","title":"Usages"},{"location":"Setting/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Setting/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Setting/#mappings","text":"Mapping Type Mapped Value self linkml:Setting native linkml:Setting","title":"Mappings"},{"location":"Setting/#linkml-source","text":"","title":"LinkML Source"},{"location":"Setting/#direct","text":"name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 slots: - setting_key - setting_value","title":"Direct"},{"location":"Setting/#induced","text":"name: setting description: assignment of a key to a value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 attributes: setting_key: name: setting_key description: the variable name for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting key: true alias: setting_key owner: setting domain_of: - setting range: ncname setting_value: name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value owner: setting domain_of: - setting range: string required: true","title":"Induced"},{"location":"SlotDefinition/","text":"Class: SlotDefinition an element that describes how instances are related to other instances URI: linkml:SlotDefinition classDiagram class SlotDefinition SlotExpression <|-- SlotDefinition Definition <|-- SlotDefinition SlotDefinition : abstract SlotDefinition : alias SlotDefinition : aliases SlotDefinition : all_members SlotDefinition : all_of SlotDefinition : alt_descriptions SlotDefinition : annotations SlotDefinition : any_of SlotDefinition : apply_to SlotDefinition : asymmetric SlotDefinition : broad_mappings SlotDefinition : children_are_mutually_disjoint SlotDefinition : close_mappings SlotDefinition : comments SlotDefinition : conforms_to SlotDefinition : created_by SlotDefinition : created_on SlotDefinition : definition_uri SlotDefinition : deprecated SlotDefinition : deprecated_element_has_exact_replacement SlotDefinition : deprecated_element_has_possible_replacement SlotDefinition : description SlotDefinition : designates_type SlotDefinition : disjoint_with SlotDefinition : domain SlotDefinition : domain_of SlotDefinition : enum_range SlotDefinition : equals_expression SlotDefinition : equals_number SlotDefinition : equals_string SlotDefinition : equals_string_in SlotDefinition : exact_mappings SlotDefinition : exactly_one_of SlotDefinition : examples SlotDefinition : extensions SlotDefinition : from_schema SlotDefinition : has_member SlotDefinition : id_prefixes SlotDefinition : identifier SlotDefinition : ifabsent SlotDefinition : implicit_prefix SlotDefinition : imported_from SlotDefinition : in_language SlotDefinition : in_subset SlotDefinition : inherited SlotDefinition : inlined SlotDefinition : inlined_as_list SlotDefinition : inverse SlotDefinition : irreflexive SlotDefinition : is_a SlotDefinition : is_class_field SlotDefinition : is_grouping_slot SlotDefinition : is_usage_slot SlotDefinition : key SlotDefinition : last_updated_on SlotDefinition : list_elements_ordered SlotDefinition : list_elements_unique SlotDefinition : local_names SlotDefinition : locally_reflexive SlotDefinition : mappings SlotDefinition : maximum_cardinality SlotDefinition : maximum_value SlotDefinition : minimum_cardinality SlotDefinition : minimum_value SlotDefinition : mixin SlotDefinition : mixins SlotDefinition : modified_by SlotDefinition : multivalued SlotDefinition : name SlotDefinition : narrow_mappings SlotDefinition : none_of SlotDefinition : notes SlotDefinition : owner SlotDefinition : path_rule SlotDefinition : pattern SlotDefinition : range SlotDefinition : range_expression SlotDefinition : rank SlotDefinition : readonly SlotDefinition : recommended SlotDefinition : reflexive SlotDefinition : reflexive_transitive_form_of SlotDefinition : related_mappings SlotDefinition : relational_role SlotDefinition : required SlotDefinition : role SlotDefinition : see_also SlotDefinition : shared SlotDefinition : singular_name SlotDefinition : slot_group SlotDefinition : slot_uri SlotDefinition : source SlotDefinition : status SlotDefinition : string_serialization SlotDefinition : structured_aliases SlotDefinition : structured_pattern SlotDefinition : subproperty_of SlotDefinition : symmetric SlotDefinition : title SlotDefinition : todos SlotDefinition : transitive SlotDefinition : transitive_form_of SlotDefinition : union_of SlotDefinition : unit SlotDefinition : usage_slot_name SlotDefinition : value_presence SlotDefinition : values_from Inheritance Element [ Extensible Annotatable CommonMetadata ] Definition SlotDefinition [ SlotExpression ] Slots Name Cardinality and Range Description Inheritance singular_name 0..1 String a name that is used in the singular form direct domain 0..1 ClassDefinition defines the type of the subject of the slot direct slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application direct multivalued 0..1 Boolean true means that slot can have more than one value direct inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses direct readonly 0..1 String If present, slot is read only direct ifabsent 0..1 String function that provides a default value for the slot direct list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... direct list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... direct shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... direct key 0..1 Boolean True means that the key slot(s) uniquely identify the container direct identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container direct designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... direct alias 0..1 String the name used for a slot in the context of its owning class direct owner 0..1 Definition the \"owner\" of the slot direct domain_of 0..* ClassDefinition the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context direct subproperty_of 0..1 SlotDefinition Ontology property which this slot is a subproperty of direct symmetric 0..1 Boolean If s is symmetric, and i direct reflexive 0..1 Boolean If s is reflexive, then i direct locally_reflexive 0..1 Boolean If s is locally_reflexive, then i direct irreflexive 0..1 Boolean If s is irreflexive, then there exists no i such i direct asymmetric 0..1 Boolean If s is antisymmetric, and i direct transitive 0..1 Boolean If s is transitive, and i direct inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... direct is_class_field 0..1 Boolean indicates that for any instance, i, the domain of this slot will include an a... direct transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... direct reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case direct role 0..1 String a textual descriptor that indicates the role played by the slot range direct is_usage_slot 0..1 Boolean True means that this slot was defined in a slot_usage situation direct usage_slot_name 0..1 String The name of the slot referenced in the slot_usage direct relational_role 0..1 RelationalRoleEnum the role a slot on a relationship class plays, for example, the subject, obje... direct slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... direct is_grouping_slot 0..1 Boolean true if this slot is a grouping slot direct path_rule 0..1 PathExpression a rule for inferring a slot assignment based on evaluating a path through a s... direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct range 0..1 Element defines the type of the object of the slot SlotExpression range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression none_of 0..* AnonymousSlotExpression holds if none of the expressions hold SlotExpression exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold SlotExpression any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold SlotExpression all_of 0..* AnonymousSlotExpression holds if all of the expressions hold SlotExpression is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated Definition abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... Definition apply_to 0..* SlotDefinition Used to extend class or slot definitions Definition values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition created_by 0..1 Uriorcurie agent that created the element Definition created_on 0..1 Datetime time at which the element was created Definition last_updated_on 0..1 Datetime time at which the element was last updated Definition modified_by 0..1 Uriorcurie agent that modified the element Definition status 0..1 Uriorcurie status of the element Definition string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used SchemaDefinition slot_definitions range SlotDefinition TypeExpression minimum_value domain SlotDefinition TypeExpression maximum_value domain SlotDefinition AnonymousTypeExpression minimum_value domain SlotDefinition AnonymousTypeExpression maximum_value domain SlotDefinition TypeDefinition minimum_value domain SlotDefinition TypeDefinition maximum_value domain SlotDefinition PathExpression traverse range SlotDefinition SlotExpression range domain SlotDefinition SlotExpression required domain SlotDefinition SlotExpression recommended domain SlotDefinition SlotExpression inlined domain SlotDefinition SlotExpression inlined_as_list domain SlotDefinition SlotExpression minimum_value domain SlotDefinition SlotExpression maximum_value domain SlotDefinition SlotExpression value_presence domain SlotDefinition AnonymousSlotExpression range domain SlotDefinition AnonymousSlotExpression required domain SlotDefinition AnonymousSlotExpression recommended domain SlotDefinition AnonymousSlotExpression inlined domain SlotDefinition AnonymousSlotExpression inlined_as_list domain SlotDefinition AnonymousSlotExpression minimum_value domain SlotDefinition AnonymousSlotExpression maximum_value domain SlotDefinition AnonymousSlotExpression value_presence domain SlotDefinition SlotDefinition singular_name domain SlotDefinition SlotDefinition domain domain SlotDefinition SlotDefinition slot_uri domain SlotDefinition SlotDefinition multivalued domain SlotDefinition SlotDefinition inherited domain SlotDefinition SlotDefinition readonly domain SlotDefinition SlotDefinition ifabsent domain SlotDefinition SlotDefinition list_elements_unique domain SlotDefinition SlotDefinition list_elements_ordered domain SlotDefinition SlotDefinition shared domain SlotDefinition SlotDefinition key domain SlotDefinition SlotDefinition identifier domain SlotDefinition SlotDefinition designates_type domain SlotDefinition SlotDefinition alias domain SlotDefinition SlotDefinition owner domain SlotDefinition SlotDefinition domain_of domain SlotDefinition SlotDefinition subproperty_of domain SlotDefinition SlotDefinition subproperty_of range SlotDefinition SlotDefinition symmetric domain SlotDefinition SlotDefinition reflexive domain SlotDefinition SlotDefinition locally_reflexive domain SlotDefinition SlotDefinition irreflexive domain SlotDefinition SlotDefinition asymmetric domain SlotDefinition SlotDefinition transitive domain SlotDefinition SlotDefinition inverse domain SlotDefinition SlotDefinition inverse range SlotDefinition SlotDefinition is_class_field domain SlotDefinition SlotDefinition transitive_form_of range SlotDefinition SlotDefinition reflexive_transitive_form_of range SlotDefinition SlotDefinition role domain SlotDefinition SlotDefinition is_usage_slot domain SlotDefinition SlotDefinition usage_slot_name domain SlotDefinition SlotDefinition relational_role domain SlotDefinition SlotDefinition slot_group domain SlotDefinition SlotDefinition slot_group range SlotDefinition SlotDefinition is_grouping_slot domain SlotDefinition SlotDefinition path_rule domain SlotDefinition SlotDefinition disjoint_with range SlotDefinition SlotDefinition union_of range SlotDefinition SlotDefinition range domain SlotDefinition SlotDefinition required domain SlotDefinition SlotDefinition recommended domain SlotDefinition SlotDefinition inlined domain SlotDefinition SlotDefinition inlined_as_list domain SlotDefinition SlotDefinition minimum_value domain SlotDefinition SlotDefinition maximum_value domain SlotDefinition SlotDefinition value_presence domain SlotDefinition SlotDefinition is_a range SlotDefinition SlotDefinition mixins range SlotDefinition SlotDefinition apply_to range SlotDefinition ClassExpression slot_conditions range SlotDefinition AnonymousClassExpression slot_conditions range SlotDefinition ClassDefinition slots range SlotDefinition ClassDefinition slot_usage range SlotDefinition ClassDefinition attributes range SlotDefinition ClassDefinition defining_slots range SlotDefinition ClassDefinition slot_conditions range SlotDefinition UniqueKey unique_key_slots range SlotDefinition Aliases slot field property attribute column variable Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SlotDefinition native linkml:SlotDefinition close rdf:Property, qb:ComponentProperty LinkML Source Direct name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slots: - singular_name - domain - slot_uri - multivalued - inherited - readonly - ifabsent - list_elements_unique - list_elements_ordered - shared - key - identifier - designates_type - alias - owner - domain_of - subproperty_of - symmetric - reflexive - locally_reflexive - irreflexive - asymmetric - transitive - inverse - is_class_field - transitive_form_of - reflexive_transitive_form_of - role - is_usage_slot - usage_slot_name - relational_role - slot_group - is_grouping_slot - path_rule - disjoint_with - children_are_mutually_disjoint - union_of slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition Induced name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition attributes: singular_name: name: singular_name description: a name that is used in the singular form in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: skos:altLabel alias: singular_name owner: slot_definition domain_of: - slot_definition range: string domain: name: domain description: \"defines the type of the subject of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain owner: slot_definition domain_of: - slot_definition range: class_definition slot_uri: name: slot_uri description: predicate of this slot for semantic web application in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: slot_definition ifabsent: slot_curie alias: slot_uri owner: slot_definition domain_of: - slot_definition range: uriorcurie multivalued: name: multivalued description: true means that slot can have more than one value in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 7 domain: slot_definition inherited: true alias: multivalued owner: slot_definition domain_of: - slot_definition range: boolean inherited: name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited owner: slot_definition domain_of: - slot_definition range: boolean readonly: name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly owner: slot_definition domain_of: - slot_definition range: string ifabsent: name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value)\\ \\ -- integer value\\n * str(value) -- string value\\n * default_range -- schema\\ \\ default range\\n * bnode -- blank node identifier\\n * slot_uri -- URI for\\ \\ the slot\\n * class_curie -- CURIE for the containing class\\n * class_uri\\ \\ -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent owner: slot_definition domain_of: - slot_definition range: string list_elements_unique: name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique owner: slot_definition domain_of: - slot_definition range: boolean list_elements_ordered: name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered owner: slot_definition domain_of: - slot_definition range: boolean shared: name: shared description: If True, then the relationship between the slot domain and range is many to one or many to many in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - inverse functional - many to one or many rank: 1000 domain: slot_definition inherited: true alias: shared owner: slot_definition domain_of: - slot_definition range: boolean key: name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. Keys cannot be optional in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: key owner: slot_definition domain_of: - slot_definition range: boolean identifier: name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier owner: slot_definition domain_of: - slot_definition range: boolean designates_type: name: designates_type description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - type designator rank: 1000 domain: slot_definition inherited: true alias: designates_type owner: slot_definition domain_of: - slot_definition range: boolean alias: name: alias description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 6 domain: slot_definition slot_uri: skos:prefLabel alias: alias owner: slot_definition domain_of: - slot_definition range: string owner: name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner owner: slot_definition domain_of: - slot_definition range: definition domain_of: name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of owner: slot_definition domain_of: - slot_definition range: class_definition subproperty_of: name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of owner: slot_definition domain_of: - slot_definition range: slot_definition symmetric: name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric owner: slot_definition domain_of: - slot_definition range: boolean reflexive: name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive owner: slot_definition domain_of: - slot_definition range: boolean locally_reflexive: name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive owner: slot_definition domain_of: - slot_definition range: boolean irreflexive: name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive owner: slot_definition domain_of: - slot_definition range: boolean asymmetric: name: asymmetric description: If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have value i comments: - asymmetry is the combination of antisymmetry and irreflexivity in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:AsymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: asymmetric owner: slot_definition domain_of: - slot_definition range: boolean transitive: name: transitive description: If s is transitive, and i.s=z, and s.s=j, then i.s=j in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:TransitiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: transitive owner: slot_definition domain_of: - slot_definition range: boolean inverse: name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse owner: slot_definition domain_of: - slot_definition range: slot_definition is_class_field: name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field owner: slot_definition domain_of: - slot_definition range: boolean transitive_form_of: name: transitive_form_of description: If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transitive (3) d holds whenever s holds and there are no intermediates, and s is not reflexive comments: - '{''Example'': ''ancestor_of is the transitive_form_of parent_of''}' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition reflexive_transitive_form_of: name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition role: name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role owner: slot_definition domain_of: - slot_definition range: string is_usage_slot: name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot owner: slot_definition domain_of: - slot_definition range: boolean usage_slot_name: name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name owner: slot_definition domain_of: - slot_definition range: string relational_role: name: relational_role description: the role a slot on a relationship class plays, for example, the subject, object or predicate roles comments: - this should only be used on slots that are applicable to class that represent relationships - in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary - in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes from_schema: https://w3id.org/linkml/meta aliases: - reification_role rank: 1000 status: testing domain: slot_definition inherited: true alias: relational_role owner: slot_definition domain_of: - slot_definition range: relational_role_enum slot_group: name: slot_group description: allows for grouping of related slots into a grouping slot that serves the role of a group in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: sh:group alias: slot_group owner: slot_definition domain_of: - slot_definition range: slot_definition range_expression: slot_conditions: is_grouping_slot: name: is_grouping_slot equals_expression: 'True' is_grouping_slot: name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot owner: slot_definition domain_of: - slot_definition range: boolean path_rule: name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule owner: slot_definition domain_of: - slot_definition range: path_expression disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: slot_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: slot_definition domain_of: - slot_definition - class_definition range: boolean union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: slot_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_definition domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_definition domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_definition domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_definition domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_definition domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_definition domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_definition domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_definition domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_definition domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_definition domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_definition domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_definition domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_definition domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: slot_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: slot_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: slot_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: slot_definition domain_of: - definition - definition range: slot_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: slot_definition domain_of: - definition - definition range: slot_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: slot_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: slot_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: slot_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: slot_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: slot_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: slot_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: slot_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: slot_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: slot_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: slot_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: slot_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: slot_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: slot_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: slot_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: slot_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: slot_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: slot_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: slot_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: slot_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: slot_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: slot_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: slot_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: slot_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: slot_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: slot_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: slot_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: slot_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: slot_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: slot_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: slot_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: slot_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: SlotDefinition"},{"location":"SlotDefinition/#class-slotdefinition","text":"an element that describes how instances are related to other instances URI: linkml:SlotDefinition classDiagram class SlotDefinition SlotExpression <|-- SlotDefinition Definition <|-- SlotDefinition SlotDefinition : abstract SlotDefinition : alias SlotDefinition : aliases SlotDefinition : all_members SlotDefinition : all_of SlotDefinition : alt_descriptions SlotDefinition : annotations SlotDefinition : any_of SlotDefinition : apply_to SlotDefinition : asymmetric SlotDefinition : broad_mappings SlotDefinition : children_are_mutually_disjoint SlotDefinition : close_mappings SlotDefinition : comments SlotDefinition : conforms_to SlotDefinition : created_by SlotDefinition : created_on SlotDefinition : definition_uri SlotDefinition : deprecated SlotDefinition : deprecated_element_has_exact_replacement SlotDefinition : deprecated_element_has_possible_replacement SlotDefinition : description SlotDefinition : designates_type SlotDefinition : disjoint_with SlotDefinition : domain SlotDefinition : domain_of SlotDefinition : enum_range SlotDefinition : equals_expression SlotDefinition : equals_number SlotDefinition : equals_string SlotDefinition : equals_string_in SlotDefinition : exact_mappings SlotDefinition : exactly_one_of SlotDefinition : examples SlotDefinition : extensions SlotDefinition : from_schema SlotDefinition : has_member SlotDefinition : id_prefixes SlotDefinition : identifier SlotDefinition : ifabsent SlotDefinition : implicit_prefix SlotDefinition : imported_from SlotDefinition : in_language SlotDefinition : in_subset SlotDefinition : inherited SlotDefinition : inlined SlotDefinition : inlined_as_list SlotDefinition : inverse SlotDefinition : irreflexive SlotDefinition : is_a SlotDefinition : is_class_field SlotDefinition : is_grouping_slot SlotDefinition : is_usage_slot SlotDefinition : key SlotDefinition : last_updated_on SlotDefinition : list_elements_ordered SlotDefinition : list_elements_unique SlotDefinition : local_names SlotDefinition : locally_reflexive SlotDefinition : mappings SlotDefinition : maximum_cardinality SlotDefinition : maximum_value SlotDefinition : minimum_cardinality SlotDefinition : minimum_value SlotDefinition : mixin SlotDefinition : mixins SlotDefinition : modified_by SlotDefinition : multivalued SlotDefinition : name SlotDefinition : narrow_mappings SlotDefinition : none_of SlotDefinition : notes SlotDefinition : owner SlotDefinition : path_rule SlotDefinition : pattern SlotDefinition : range SlotDefinition : range_expression SlotDefinition : rank SlotDefinition : readonly SlotDefinition : recommended SlotDefinition : reflexive SlotDefinition : reflexive_transitive_form_of SlotDefinition : related_mappings SlotDefinition : relational_role SlotDefinition : required SlotDefinition : role SlotDefinition : see_also SlotDefinition : shared SlotDefinition : singular_name SlotDefinition : slot_group SlotDefinition : slot_uri SlotDefinition : source SlotDefinition : status SlotDefinition : string_serialization SlotDefinition : structured_aliases SlotDefinition : structured_pattern SlotDefinition : subproperty_of SlotDefinition : symmetric SlotDefinition : title SlotDefinition : todos SlotDefinition : transitive SlotDefinition : transitive_form_of SlotDefinition : union_of SlotDefinition : unit SlotDefinition : usage_slot_name SlotDefinition : value_presence SlotDefinition : values_from","title":"Class: SlotDefinition"},{"location":"SlotDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] Definition SlotDefinition [ SlotExpression ]","title":"Inheritance"},{"location":"SlotDefinition/#slots","text":"Name Cardinality and Range Description Inheritance singular_name 0..1 String a name that is used in the singular form direct domain 0..1 ClassDefinition defines the type of the subject of the slot direct slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application direct multivalued 0..1 Boolean true means that slot can have more than one value direct inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses direct readonly 0..1 String If present, slot is read only direct ifabsent 0..1 String function that provides a default value for the slot direct list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... direct list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... direct shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... direct key 0..1 Boolean True means that the key slot(s) uniquely identify the container direct identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container direct designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... direct alias 0..1 String the name used for a slot in the context of its owning class direct owner 0..1 Definition the \"owner\" of the slot direct domain_of 0..* ClassDefinition the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context direct subproperty_of 0..1 SlotDefinition Ontology property which this slot is a subproperty of direct symmetric 0..1 Boolean If s is symmetric, and i direct reflexive 0..1 Boolean If s is reflexive, then i direct locally_reflexive 0..1 Boolean If s is locally_reflexive, then i direct irreflexive 0..1 Boolean If s is irreflexive, then there exists no i such i direct asymmetric 0..1 Boolean If s is antisymmetric, and i direct transitive 0..1 Boolean If s is transitive, and i direct inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... direct is_class_field 0..1 Boolean indicates that for any instance, i, the domain of this slot will include an a... direct transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... direct reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case direct role 0..1 String a textual descriptor that indicates the role played by the slot range direct is_usage_slot 0..1 Boolean True means that this slot was defined in a slot_usage situation direct usage_slot_name 0..1 String The name of the slot referenced in the slot_usage direct relational_role 0..1 RelationalRoleEnum the role a slot on a relationship class plays, for example, the subject, obje... direct slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... direct is_grouping_slot 0..1 Boolean true if this slot is a grouping slot direct path_rule 0..1 PathExpression a rule for inferring a slot assignment based on evaluating a path through a s... direct disjoint_with 0..* Definition Two classes are disjoint if they have no instances in common, two slots are d... direct children_are_mutually_disjoint 0..1 Boolean If true then all direct is_a children are mutually disjoint and share no inst... direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct range 0..1 Element defines the type of the object of the slot SlotExpression range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges SlotExpression enum_range 0..1 EnumExpression An inlined enumeration SlotExpression required 0..1 Boolean true means that the slot must be present in the loaded definition SlotExpression recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... SlotExpression inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... SlotExpression inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances SlotExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... SlotExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... SlotExpression pattern 0..1 String the string value of the slot must conform to this regular expression expresse... SlotExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... SlotExpression unit 0..1 UnitOfMeasure an encoding of a unit SlotExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... SlotExpression value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... SlotExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... SlotExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... SlotExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... SlotExpression equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression SlotExpression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot SlotExpression maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot SlotExpression has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... SlotExpression all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... SlotExpression none_of 0..* AnonymousSlotExpression holds if none of the expressions hold SlotExpression exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold SlotExpression any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold SlotExpression all_of 0..* AnonymousSlotExpression holds if all of the expressions hold SlotExpression is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated Definition abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... Definition mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... Definition mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... Definition apply_to 0..* SlotDefinition Used to extend class or slot definitions Definition values_from 0..* Uriorcurie The identifier of a \"value set\" -- a set of identifiers that form the possibl... Definition created_by 0..1 Uriorcurie agent that created the element Definition created_on 0..1 Datetime time at which the element was created Definition last_updated_on 0..1 Datetime time at which the element was last updated Definition modified_by 0..1 Uriorcurie agent that modified the element Definition status 0..1 Uriorcurie status of the element Definition string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object Definition name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"SlotDefinition/#usages","text":"used by used in type used SchemaDefinition slot_definitions range SlotDefinition TypeExpression minimum_value domain SlotDefinition TypeExpression maximum_value domain SlotDefinition AnonymousTypeExpression minimum_value domain SlotDefinition AnonymousTypeExpression maximum_value domain SlotDefinition TypeDefinition minimum_value domain SlotDefinition TypeDefinition maximum_value domain SlotDefinition PathExpression traverse range SlotDefinition SlotExpression range domain SlotDefinition SlotExpression required domain SlotDefinition SlotExpression recommended domain SlotDefinition SlotExpression inlined domain SlotDefinition SlotExpression inlined_as_list domain SlotDefinition SlotExpression minimum_value domain SlotDefinition SlotExpression maximum_value domain SlotDefinition SlotExpression value_presence domain SlotDefinition AnonymousSlotExpression range domain SlotDefinition AnonymousSlotExpression required domain SlotDefinition AnonymousSlotExpression recommended domain SlotDefinition AnonymousSlotExpression inlined domain SlotDefinition AnonymousSlotExpression inlined_as_list domain SlotDefinition AnonymousSlotExpression minimum_value domain SlotDefinition AnonymousSlotExpression maximum_value domain SlotDefinition AnonymousSlotExpression value_presence domain SlotDefinition SlotDefinition singular_name domain SlotDefinition SlotDefinition domain domain SlotDefinition SlotDefinition slot_uri domain SlotDefinition SlotDefinition multivalued domain SlotDefinition SlotDefinition inherited domain SlotDefinition SlotDefinition readonly domain SlotDefinition SlotDefinition ifabsent domain SlotDefinition SlotDefinition list_elements_unique domain SlotDefinition SlotDefinition list_elements_ordered domain SlotDefinition SlotDefinition shared domain SlotDefinition SlotDefinition key domain SlotDefinition SlotDefinition identifier domain SlotDefinition SlotDefinition designates_type domain SlotDefinition SlotDefinition alias domain SlotDefinition SlotDefinition owner domain SlotDefinition SlotDefinition domain_of domain SlotDefinition SlotDefinition subproperty_of domain SlotDefinition SlotDefinition subproperty_of range SlotDefinition SlotDefinition symmetric domain SlotDefinition SlotDefinition reflexive domain SlotDefinition SlotDefinition locally_reflexive domain SlotDefinition SlotDefinition irreflexive domain SlotDefinition SlotDefinition asymmetric domain SlotDefinition SlotDefinition transitive domain SlotDefinition SlotDefinition inverse domain SlotDefinition SlotDefinition inverse range SlotDefinition SlotDefinition is_class_field domain SlotDefinition SlotDefinition transitive_form_of range SlotDefinition SlotDefinition reflexive_transitive_form_of range SlotDefinition SlotDefinition role domain SlotDefinition SlotDefinition is_usage_slot domain SlotDefinition SlotDefinition usage_slot_name domain SlotDefinition SlotDefinition relational_role domain SlotDefinition SlotDefinition slot_group domain SlotDefinition SlotDefinition slot_group range SlotDefinition SlotDefinition is_grouping_slot domain SlotDefinition SlotDefinition path_rule domain SlotDefinition SlotDefinition disjoint_with range SlotDefinition SlotDefinition union_of range SlotDefinition SlotDefinition range domain SlotDefinition SlotDefinition required domain SlotDefinition SlotDefinition recommended domain SlotDefinition SlotDefinition inlined domain SlotDefinition SlotDefinition inlined_as_list domain SlotDefinition SlotDefinition minimum_value domain SlotDefinition SlotDefinition maximum_value domain SlotDefinition SlotDefinition value_presence domain SlotDefinition SlotDefinition is_a range SlotDefinition SlotDefinition mixins range SlotDefinition SlotDefinition apply_to range SlotDefinition ClassExpression slot_conditions range SlotDefinition AnonymousClassExpression slot_conditions range SlotDefinition ClassDefinition slots range SlotDefinition ClassDefinition slot_usage range SlotDefinition ClassDefinition attributes range SlotDefinition ClassDefinition defining_slots range SlotDefinition ClassDefinition slot_conditions range SlotDefinition UniqueKey unique_key_slots range SlotDefinition","title":"Usages"},{"location":"SlotDefinition/#aliases","text":"slot field property attribute column variable","title":"Aliases"},{"location":"SlotDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SlotDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SlotDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:SlotDefinition native linkml:SlotDefinition close rdf:Property, qb:ComponentProperty","title":"Mappings"},{"location":"SlotDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"SlotDefinition/#direct","text":"name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slots: - singular_name - domain - slot_uri - multivalued - inherited - readonly - ifabsent - list_elements_unique - list_elements_ordered - shared - key - identifier - designates_type - alias - owner - domain_of - subproperty_of - symmetric - reflexive - locally_reflexive - irreflexive - asymmetric - transitive - inverse - is_class_field - transitive_form_of - reflexive_transitive_form_of - role - is_usage_slot - usage_slot_name - relational_role - slot_group - is_grouping_slot - path_rule - disjoint_with - children_are_mutually_disjoint - union_of slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition","title":"Direct"},{"location":"SlotDefinition/#induced","text":"name: slot_definition description: an element that describes how instances are related to other instances in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta aliases: - slot - field - property - attribute - column - variable close_mappings: - rdf:Property - qb:ComponentProperty rank: 3 is_a: definition mixins: - slot_expression slot_usage: is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated domain_of: - definition - definition - definition range: slot_definition apply_to: name: apply_to domain_of: - definition - definition - definition range: slot_definition disjoint_with: name: disjoint_with domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition attributes: singular_name: name: singular_name description: a name that is used in the singular form in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: skos:altLabel alias: singular_name owner: slot_definition domain_of: - slot_definition range: string domain: name: domain description: \"defines the type of the subject of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain owner: slot_definition domain_of: - slot_definition range: class_definition slot_uri: name: slot_uri description: predicate of this slot for semantic web application in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: slot_definition ifabsent: slot_curie alias: slot_uri owner: slot_definition domain_of: - slot_definition range: uriorcurie multivalued: name: multivalued description: true means that slot can have more than one value in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 7 domain: slot_definition inherited: true alias: multivalued owner: slot_definition domain_of: - slot_definition range: boolean inherited: name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited owner: slot_definition domain_of: - slot_definition range: boolean readonly: name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly owner: slot_definition domain_of: - slot_definition range: string ifabsent: name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value)\\ \\ -- integer value\\n * str(value) -- string value\\n * default_range -- schema\\ \\ default range\\n * bnode -- blank node identifier\\n * slot_uri -- URI for\\ \\ the slot\\n * class_curie -- CURIE for the containing class\\n * class_uri\\ \\ -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent owner: slot_definition domain_of: - slot_definition range: string list_elements_unique: name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique owner: slot_definition domain_of: - slot_definition range: boolean list_elements_ordered: name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered owner: slot_definition domain_of: - slot_definition range: boolean shared: name: shared description: If True, then the relationship between the slot domain and range is many to one or many to many in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - inverse functional - many to one or many rank: 1000 domain: slot_definition inherited: true alias: shared owner: slot_definition domain_of: - slot_definition range: boolean key: name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. Keys cannot be optional in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: key owner: slot_definition domain_of: - slot_definition range: boolean identifier: name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier owner: slot_definition domain_of: - slot_definition range: boolean designates_type: name: designates_type description: True means that the key slot(s) is used to determine the instantiation (types) relation between objects and a ClassDefinition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - type designator rank: 1000 domain: slot_definition inherited: true alias: designates_type owner: slot_definition domain_of: - slot_definition range: boolean alias: name: alias description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 6 domain: slot_definition slot_uri: skos:prefLabel alias: alias owner: slot_definition domain_of: - slot_definition range: string owner: name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner owner: slot_definition domain_of: - slot_definition range: definition domain_of: name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of owner: slot_definition domain_of: - slot_definition range: class_definition subproperty_of: name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of owner: slot_definition domain_of: - slot_definition range: slot_definition symmetric: name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric owner: slot_definition domain_of: - slot_definition range: boolean reflexive: name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive owner: slot_definition domain_of: - slot_definition range: boolean locally_reflexive: name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive owner: slot_definition domain_of: - slot_definition range: boolean irreflexive: name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive owner: slot_definition domain_of: - slot_definition range: boolean asymmetric: name: asymmetric description: If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have value i comments: - asymmetry is the combination of antisymmetry and irreflexivity in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:AsymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: asymmetric owner: slot_definition domain_of: - slot_definition range: boolean transitive: name: transitive description: If s is transitive, and i.s=z, and s.s=j, then i.s=j in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:TransitiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: transitive owner: slot_definition domain_of: - slot_definition range: boolean inverse: name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse owner: slot_definition domain_of: - slot_definition range: slot_definition is_class_field: name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field owner: slot_definition domain_of: - slot_definition range: boolean transitive_form_of: name: transitive_form_of description: If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transitive (3) d holds whenever s holds and there are no intermediates, and s is not reflexive comments: - '{''Example'': ''ancestor_of is the transitive_form_of parent_of''}' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition reflexive_transitive_form_of: name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of owner: slot_definition domain_of: - slot_definition range: slot_definition role: name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role owner: slot_definition domain_of: - slot_definition range: string is_usage_slot: name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot owner: slot_definition domain_of: - slot_definition range: boolean usage_slot_name: name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name owner: slot_definition domain_of: - slot_definition range: string relational_role: name: relational_role description: the role a slot on a relationship class plays, for example, the subject, object or predicate roles comments: - this should only be used on slots that are applicable to class that represent relationships - in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary - in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes from_schema: https://w3id.org/linkml/meta aliases: - reification_role rank: 1000 status: testing domain: slot_definition inherited: true alias: relational_role owner: slot_definition domain_of: - slot_definition range: relational_role_enum slot_group: name: slot_group description: allows for grouping of related slots into a grouping slot that serves the role of a group in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: sh:group alias: slot_group owner: slot_definition domain_of: - slot_definition range: slot_definition range_expression: slot_conditions: is_grouping_slot: name: is_grouping_slot equals_expression: 'True' is_grouping_slot: name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot owner: slot_definition domain_of: - slot_definition range: boolean path_rule: name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule owner: slot_definition domain_of: - slot_definition range: path_expression disjoint_with: name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with owner: slot_definition domain_of: - slot_definition - class_definition - slot_definition - class_definition range: slot_definition children_are_mutually_disjoint: name: children_are_mutually_disjoint description: If true then all direct is_a children are mutually disjoint and share no instances in common from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: children_are_mutually_disjoint owner: slot_definition domain_of: - slot_definition - class_definition range: boolean union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: slot_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: slot_definition range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_definition domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_definition domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_definition domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_definition domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_definition domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_definition domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_definition domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_definition domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_definition domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_definition domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_definition domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_definition domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_definition domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_definition domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_definition domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression is_a: name: is_a description: A primary parent slot from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a owner: slot_definition domain_of: - definition - anonymous_class_expression - definition - anonymous_class_expression range: slot_definition abstract: name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract owner: slot_definition domain_of: - definition range: boolean mixin: name: mixin description: Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Mixin aliases: - trait rank: 1000 domain: definition alias: mixin owner: slot_definition domain_of: - definition range: boolean mixins: name: mixins description: A collection of secondary parent mixin slots from which inheritable metaslots are propagated from_schema: https://w3id.org/linkml/meta rank: 13 domain: definition multivalued: true alias: mixins owner: slot_definition domain_of: - definition - definition range: slot_definition apply_to: name: apply_to description: Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: apply_to owner: slot_definition domain_of: - definition - definition range: slot_definition values_from: name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from owner: slot_definition domain_of: - definition range: uriorcurie created_by: name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by owner: slot_definition domain_of: - definition range: uriorcurie created_on: name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on owner: slot_definition domain_of: - definition range: datetime last_updated_on: name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on owner: slot_definition domain_of: - definition range: datetime modified_by: name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by owner: slot_definition domain_of: - definition range: uriorcurie status: name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status owner: slot_definition domain_of: - definition range: uriorcurie string_serialization: name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization owner: slot_definition domain_of: - definition range: string name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: slot_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: slot_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: slot_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: slot_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: slot_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: slot_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: slot_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: slot_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: slot_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: slot_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: slot_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: slot_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: slot_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: slot_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: slot_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: slot_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: slot_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: slot_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: slot_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: slot_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: slot_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: slot_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: slot_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: slot_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: slot_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: slot_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"SlotExpression/","text":"Class: SlotExpression an expression that constrains the range of values a slot can take URI: linkml:SlotExpression classDiagram class SlotExpression Expression <|-- SlotExpression SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence SlotExpression <|-- AnonymousSlotExpression SlotExpression <|-- SlotDefinition SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence Inheritance Expression SlotExpression Slots Name Cardinality and Range Description Inheritance range 0..1 Element defines the type of the object of the slot direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct enum_range 0..1 EnumExpression An inlined enumeration direct required 0..1 Boolean true means that the slot must be present in the loaded definition direct recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... direct inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... direct inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression direct minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot direct maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot direct has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... direct all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... direct none_of 0..* Expression holds if none of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct any_of 0..* Expression holds if at least one of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct Mixin Usage mixed into description AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Usages used by used in type used TypeExpression implicit_prefix domain SlotExpression AnonymousTypeExpression implicit_prefix domain SlotExpression TypeDefinition implicit_prefix domain SlotExpression PathExpression range_expression domain SlotExpression SlotExpression range_expression domain SlotExpression SlotExpression implicit_prefix domain SlotExpression AnonymousSlotExpression range_expression domain SlotExpression AnonymousSlotExpression implicit_prefix domain SlotExpression SlotDefinition range_expression domain SlotExpression SlotDefinition implicit_prefix domain SlotExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SlotExpression native linkml:SlotExpression LinkML Source Direct name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slots: - range - range_expression - enum_range - required - recommended - inlined - inlined_as_list - minimum_value - maximum_value - pattern - structured_pattern - unit - implicit_prefix - value_presence - equals_string - equals_string_in - equals_number - equals_expression - minimum_cardinality - maximum_cardinality - has_member - all_members - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression Induced name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression","title":"Class: SlotExpression"},{"location":"SlotExpression/#class-slotexpression","text":"an expression that constrains the range of values a slot can take URI: linkml:SlotExpression classDiagram class SlotExpression Expression <|-- SlotExpression SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence SlotExpression <|-- AnonymousSlotExpression SlotExpression <|-- SlotDefinition SlotExpression : all_members SlotExpression : all_of SlotExpression : any_of SlotExpression : enum_range SlotExpression : equals_expression SlotExpression : equals_number SlotExpression : equals_string SlotExpression : equals_string_in SlotExpression : exactly_one_of SlotExpression : has_member SlotExpression : implicit_prefix SlotExpression : inlined SlotExpression : inlined_as_list SlotExpression : maximum_cardinality SlotExpression : maximum_value SlotExpression : minimum_cardinality SlotExpression : minimum_value SlotExpression : none_of SlotExpression : pattern SlotExpression : range SlotExpression : range_expression SlotExpression : recommended SlotExpression : required SlotExpression : structured_pattern SlotExpression : unit SlotExpression : value_presence","title":"Class: SlotExpression"},{"location":"SlotExpression/#inheritance","text":"Expression SlotExpression","title":"Inheritance"},{"location":"SlotExpression/#slots","text":"Name Cardinality and Range Description Inheritance range 0..1 Element defines the type of the object of the slot direct range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges direct enum_range 0..1 EnumExpression An inlined enumeration direct required 0..1 Boolean true means that the slot must be present in the loaded definition direct recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... direct inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... direct inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct value_presence 0..1 PresenceEnum if true then a value must be present (for lists there must be at least one va... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression direct minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot direct maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot direct has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... direct all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... direct none_of 0..* Expression holds if none of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct any_of 0..* Expression holds if at least one of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct","title":"Slots"},{"location":"SlotExpression/#mixin-usage","text":"mixed into description AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Mixin Usage"},{"location":"SlotExpression/#usages","text":"used by used in type used TypeExpression implicit_prefix domain SlotExpression AnonymousTypeExpression implicit_prefix domain SlotExpression TypeDefinition implicit_prefix domain SlotExpression PathExpression range_expression domain SlotExpression SlotExpression range_expression domain SlotExpression SlotExpression implicit_prefix domain SlotExpression AnonymousSlotExpression range_expression domain SlotExpression AnonymousSlotExpression implicit_prefix domain SlotExpression SlotDefinition range_expression domain SlotExpression SlotDefinition implicit_prefix domain SlotExpression","title":"Usages"},{"location":"SlotExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SlotExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SlotExpression/#mappings","text":"Mapping Type Mapped Value self linkml:SlotExpression native linkml:SlotExpression","title":"Mappings"},{"location":"SlotExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"SlotExpression/#direct","text":"name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slots: - range - range_expression - enum_range - required - recommended - inlined - inlined_as_list - minimum_value - maximum_value - pattern - structured_pattern - unit - implicit_prefix - value_presence - equals_string - equals_string_in - equals_number - equals_expression - minimum_cardinality - maximum_cardinality - has_member - all_members - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression","title":"Direct"},{"location":"SlotExpression/#induced","text":"name: slot_expression description: an expression that constrains the range of values a slot can take from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true status: testing slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression attributes: range: name: range description: \"defines the type of the object of the slot. Given the following\\ \\ slot definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n\\ \\ X:\\n S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range owner: slot_expression domain_of: - slot_expression range: element range_expression: name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression owner: slot_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression enum_range: name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range owner: slot_expression domain_of: - slot_expression range: enum_expression required: name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required owner: slot_expression domain_of: - slot_expression range: boolean recommended: name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended owner: slot_expression domain_of: - slot_expression range: boolean inlined: name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined owner: slot_expression domain_of: - slot_expression range: boolean inlined_as_list: name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list owner: slot_expression domain_of: - slot_expression range: boolean minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: slot_expression domain_of: - type_expression - slot_expression range: integer pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: slot_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: slot_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: slot_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: slot_expression domain_of: - type_expression - slot_expression range: string value_presence: name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence owner: slot_expression domain_of: - slot_expression range: presence_enum equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: slot_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: slot_expression domain_of: - type_expression - slot_expression range: integer equals_expression: name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression owner: slot_expression domain_of: - slot_expression range: string minimum_cardinality: name: minimum_cardinality description: the minimum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: minimum_cardinality owner: slot_expression domain_of: - slot_expression range: integer maximum_cardinality: name: maximum_cardinality description: the maximum number of entries for a multivalued slot in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing inherited: true alias: maximum_cardinality owner: slot_expression domain_of: - slot_expression range: integer has_member: name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression all_members: name: all_members description: the value of the slot is multivalued with all members satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: all_members owner: slot_expression domain_of: - slot_expression range: anonymous_slot_expression none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: slot_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_slot_expression","title":"Induced"},{"location":"Specification/","text":"Specification A subset that includes all the metamodel elements that form part of the LinkML specification Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description ClassDefinition the definition of a class or interface ClassRule A rule that applies to instances of a class CommonMetadata Generic metadata shared across definitions EnumDefinition List of values that constrain the range of a slot EnumExpression An expression that constrains the range of a slot MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... Prefix prefix URI tuple ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... SchemaDefinition a collection of subset, type, slot and class definitions Setting assignment of a key to a value SlotDefinition the definition of a property or a slot SubsetDefinition the name and description of a subset TypeDefinition A data type definition. UniqueKey a collection of slots whose values uniquely identify an instance of a class ClassDefinition the definition of a class or interface Name Cardinality and Range Description slots 0..* SlotDefinition list of slot names that are applicable to a class slot_usage 0..* SlotDefinition the redefinition of a slot in the context of the containing class definition. attributes 0..* SlotDefinition Inline definition of slots class_uri 0..1 xsd:anyURI URI of the class in an RDF environment subclass_of 0..1 xsd:anyURI rdfs:subClassOf to be emitted in OWL generation union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... defining_slots 0..* SlotDefinition The combination of is a plus defining slots form a genus-differentia definiti... tree_root 0..1 xsd:boolean indicator that this is the root class in tree structures unique_keys 0..* UniqueKey Set of unique keys for this slot rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... slot_names_unique 0..1 xsd:boolean if true then induced/mangled slot names are not created for class_usage and a... represents_relationship 0..1 xsd:boolean true if this class represents a relationship rather than an entity disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... children_are_mutually_disjoint 0..1 xsd:boolean If true then all direct is_a children are mutually disjoint and share no inst... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression is_a 0..1 ClassDefinition specifies single-inheritance between classes or slots. While multiple inherit... abstract 0..1 xsd:boolean an abstract class is a high level class or slot that is typically used to gro... mixin 0..1 xsd:boolean this slot or class can only be used as a mixin. mixins 0..* ClassDefinition List of definitions to be mixed in. Targets may be any definition of the same... apply_to 0..* ClassDefinition Used to extend class or slot definitions. For example, if we have a core sche... values_from 0..* xsd:anyURI The identifier of a \"value set\" -- a set of identifiers that form the possibl... created_by 0..1 xsd:anyURI agent that created the element created_on 0..1 xsd:dateTime time at which the element was created last_updated_on 0..1 xsd:dateTime time at which the element was last updated modified_by 0..1 xsd:anyURI agent that modified the element status 0..1 xsd:anyURI status of the element string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object.... name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... ClassRule A rule that applies to instances of a class Name Cardinality and Range Description preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... bidirectional 0..1 xsd:boolean in addition to preconditions entailing postconditions, the postconditions ent... open_world 0..1 xsd:boolean if true, the the postconditions may be omitted in instance data, but it is va... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... deactivated 0..1 xsd:boolean a deactivated rule is not executed by the rules engine extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... CommonMetadata Generic metadata shared across definitions Name Cardinality and Range Description description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... EnumDefinition List of values that constrain the range of a slot Name Cardinality and Range Description enum_uri 0..1 xsd:anyURI URI of the enum in an RDF environment code_set 0..1 xsd:anyURI the identifier of an enumeration code set. code_set_tag 0..1 xsd:string the version tag of the enumeration code set code_set_version 0..1 xsd:string the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values. permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values is_a 0..1 Definition specifies single-inheritance between classes or slots. While multiple inherit... abstract 0..1 xsd:boolean an abstract class is a high level class or slot that is typically used to gro... mixin 0..1 xsd:boolean this slot or class can only be used as a mixin. mixins 0..* Definition List of definitions to be mixed in. Targets may be any definition of the same... apply_to 0..* Definition Used to extend class or slot definitions. For example, if we have a core sche... values_from 0..* xsd:anyURI The identifier of a \"value set\" -- a set of identifiers that form the possibl... created_by 0..1 xsd:anyURI agent that created the element created_on 0..1 xsd:dateTime time at which the element was created last_updated_on 0..1 xsd:dateTime time at which the element was last updated modified_by 0..1 xsd:anyURI agent that modified the element status 0..1 xsd:anyURI status of the element string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object.... name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... EnumExpression An expression that constrains the range of a slot Name Cardinality and Range Description code_set 0..1 xsd:anyURI the identifier of an enumeration code set. code_set_tag 0..1 xsd:string the version tag of the enumeration code set code_set_version 0..1 xsd:string the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values. permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values MatchQuery A query that is used on an enum expression to dynamically obtain a set of permissivle values via a query that matches on properties of the external concepts Name Cardinality and Range Description identifier_pattern 0..1 xsd:string A regular expression that is used to obtain a set of identifiers from a sourc... source_ontology 0..1 xsd:anyURI An ontology or vocabulary or terminology that is used in a query to obtain a ... PermissibleValue a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description text 0..1 xsd:string description 0..1 recommended xsd:string a description of the element's purpose and use meaning 0..1 xsd:anyURI the value meaning of a permissible value unit 0..1 UnitOfMeasure an encoding of a unit extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... Prefix prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 xsd:string the nsname (sans ':' for a given prefix) prefix_reference 1..1 xsd:anyURI A URI associated with a given prefix ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types Name Cardinality and Range Description source_ontology 0..1 xsd:anyURI An ontology or vocabulary or terminology that is used in a query to obtain a ... source_nodes 0..* xsd:anyURI A list of nodes that are used in the reachability query relationship_types 0..* xsd:anyURI A list of relationship types (properties) that are used in a reachability que... is_direct 0..1 xsd:boolean True if the reachability query should only include directly related nodes, if... include_self 0..1 xsd:boolean True if the query is reflexive traverse_up 0..1 xsd:boolean True if the direction of the reachability query is reversed and ancestors are... SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 xsd:anyURI The official schema URI version 0..1 xsd:string particular version of schema imports 0..* xsd:anyURI other schemas that are included in this schema license 0..1 xsd:string license for the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... emit_prefixes 0..* xsd:string a list of Curie prefixes that are used in the representation of instances of ... default_curi_maps 0..* xsd:string ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... default_prefix 0..1 xsd:string default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... subsets 0..* SubsetDefinition list of subsets referenced in this model types 0..* TypeDefinition data types used in the model enums 0..* EnumDefinition enumerated ranges slot_definitions 0..* SlotDefinition slot definitions classes 0..* ClassDefinition class definitions metamodel_version 0..1 xsd:string Version of the metamodel used to load the schema source_file 0..1 xsd:string name, uri or description of the source of the schema source_file_date 0..1 xsd:dateTime modification date of the source of the schema source_file_size 0..1 xsd:integer size in bytes of the source of the schema generation_date 0..1 xsd:dateTime date and time that the schema was loaded/generated slot_names_unique 0..1 xsd:boolean if true then induced/mangled slot names are not created for class_usage and a... settings 0..* Setting A collection of global variable settings categories 0..* xsd:anyURI controlled terms used to categorize an element keywords 0..* xsd:string Keywords or tags used to describe the element name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... Setting assignment of a key to a value Name Cardinality and Range Description setting_key 0..1 xsd:string the variable name for a setting setting_value 1..1 xsd:string The value assigned for a setting SlotDefinition the definition of a property or a slot Name Cardinality and Range Description singular_name 0..1 xsd:string a name that is used in the singular form domain 0..1 ClassDefinition defines the type of the subject of the slot. Given the following slot defini... slot_uri 0..1 xsd:anyURI predicate of this slot for semantic web application multivalued 0..1 xsd:boolean true means that slot can have more than one value inherited 0..1 xsd:boolean true means that the value of a slot is inherited by subclasses readonly 0..1 xsd:string If present, slot is read only. Text explains why ifabsent 0..1 xsd:string function that provides a default value for the slot. Possible values for thi... list_elements_unique 0..1 xsd:boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 xsd:boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 xsd:boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container. identifier 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container. There can be... designates_type 0..1 xsd:boolean True means that the key slot(s) is used to determine the instantiation (types... alias 0..1 xsd:string the name used for a slot in the context of its owning class. If present, thi... owner 0..1 Definition the \"owner\" of the slot. It is the class if it appears in the slots list, oth... domain_of 0..* ClassDefinition the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context subproperty_of 0..1 SlotDefinition Ontology property which this slot is a subproperty of. Note: setting this pr... symmetric 0..1 xsd:boolean If s is symmetric, and i.s=v, then v.s=i reflexive 0..1 xsd:boolean If s is reflexive, then i.s=i for all instances i locally_reflexive 0..1 xsd:boolean If s is locally_reflexive, then i.s=i for all instances i where s if a class ... irreflexive 0..1 xsd:boolean If s is irreflexive, then there exists no i such i.s=i asymmetric 0..1 xsd:boolean If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have... transitive 0..1 xsd:boolean If s is transitive, and i.s=z, and s.s=j, then i.s=j inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... is_class_field 0..1 xsd:boolean indicates that for any instance, i, the domain of this slot will include an a... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case role 0..1 xsd:string a textual descriptor that indicates the role played by the slot range is_usage_slot 0..1 xsd:boolean True means that this slot was defined in a slot_usage situation usage_slot_name 0..1 xsd:string The name of the slot referenced in the slot_usage relational_role 0..1 RelationalRoleEnum the role a slot on a relationship class plays, for example, the subject, obje... slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 xsd:boolean true if this slot is a grouping slot path_rule 0..1 PathExpression a rule for inferring a slot assignment based on evaluating a path through a s... disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... children_are_mutually_disjoint 0..1 xsd:boolean If true then all direct is_a children are mutually disjoint and share no inst... union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot. Given the following slot definit... range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration required 0..1 xsd:boolean true means that the slot must be present in the loaded definition recommended 0..1 xsd:boolean true means that the slot should be present in the loaded definition, but this... inlined 0..1 xsd:boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 xsd:boolean True means that an inlined slot is represented as a list of range instances. ... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... unit 0..1 UnitOfMeasure an encoding of a unit implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_number 0..1 xsd:integer the slot must have range of a number and the value of the slot must equal the... equals_expression 0..1 xsd:string the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 xsd:integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 xsd:integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the values of the slot is multivalued with at least one member satisfying the... all_members 0..* SlotDefinition the value of the multiavlued slot is a list where all elements conform to the... none_of 0..* AnonymousSlotExpression holds if none of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold is_a 0..1 SlotDefinition specifies single-inheritance between classes or slots. While multiple inherit... abstract 0..1 xsd:boolean an abstract class is a high level class or slot that is typically used to gro... mixin 0..1 xsd:boolean this slot or class can only be used as a mixin. mixins 0..* SlotDefinition List of definitions to be mixed in. Targets may be any definition of the same... apply_to 0..* SlotDefinition Used to extend class or slot definitions. For example, if we have a core sche... values_from 0..* xsd:anyURI The identifier of a \"value set\" -- a set of identifiers that form the possibl... created_by 0..1 xsd:anyURI agent that created the element created_on 0..1 xsd:dateTime time at which the element was created last_updated_on 0..1 xsd:dateTime time at which the element was last updated modified_by 0..1 xsd:anyURI agent that modified the element status 0..1 xsd:anyURI status of the element string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object.... name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... SubsetDefinition the name and description of a subset Name Cardinality and Range Description name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... TypeDefinition A data type definition. Name Cardinality and Range Description typeof 0..1 TypeDefinition Names a parent type base 0..1 xsd:string python base type that implements this type definition type_uri 0..1 xsd:anyURI The uri that defines the possible values for the type definition repr 0..1 xsd:string the name of the python object that implements this type definition union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... unit 0..1 UnitOfMeasure an encoding of a unit implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_number 0..1 xsd:integer the slot must have range of a number and the value of the slot must equal the... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... none_of 0..* AnonymousTypeExpression holds if none of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... UniqueKey a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description unique_key_name 1..1 xsd:string name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... Slots in subset Slot Description abstract an abstract class is a high level class or slot that is typically used to gro... alias the name used for a slot in the context of its owning class. If present, thi... all_members the value of the multiavlued slot is a list where all elements conform to the... all_of holds if all of the expressions hold any_of holds if at least one of the expressions hold asymmetric If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have... attributes Inline definition of slots base python base type that implements this type definition bidirectional in addition to preconditions entailing postconditions, the postconditions ent... class_uri URI of the class in an RDF environment classes class definitions classification_rules the collection of classification rules that apply to all members of this clas... code_set the identifier of an enumeration code set. concepts A list of identifiers that are used to construct a set of permissible values default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab default_range default slot range to be used if range element is omitted from a slot definit... designates_type True means that the key slot(s) is used to determine the instantiation (types... disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... domain defines the type of the subject of the slot. Given the following slot defini... elseconditions an expression that must hold for an instance of the class, if the preconditio... enum_range An inlined enumeration enum_uri URI of the enum in an RDF environment enums enumerated ranges equals_expression the value of the slot must equal the value of the evaluated expression equals_number_in the slot must have range number and the value of the slot must equal one of t... equals_string the slot must have range string and the value of the slot must equal the spec... equals_string_in the slot must have range string and the value of the slot must equal one of t... exactly_one_of holds if only one of the expressions hold from_schema id of the schema that defined the element has_member the values of the slot is multivalued with at least one member satisfying the... id The official schema URI id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... identifier True means that the key slot(s) uniquely identify the container. There can be... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... ifabsent function that provides a default value for the slot. Possible values for thi... implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... imports other schemas that are included in this schema inapplicable true means that the slot must not be present include An enum expression that yields a list of permissible values that are to be in... include_self True if the query is reflexive inherited true means that the value of a slot is inherited by subclasses inherits An enum definition that is used as the basis to create a new enum inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances. ... interpolated if true then the pattern is first string interpolated inverse indicates that any instance of d s r implies that there is also an instance o... irreflexive If s is irreflexive, then there exists no i such i.s=i is_a specifies single-inheritance between classes or slots. While multiple inherit... is_direct True if the reachability query should only include directly related nodes, if... is_grouping_slot true if this slot is a grouping slot key True means that the key slot(s) uniquely identify the container. list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... locally_reflexive If s is locally_reflexive, then i.s=i for all instances i where s if a class ... matches Specifies a match query that is used to calculate the list of permissible val... maximum_cardinality the maximum number of entries for a multivalued slot maximum_value for slots with ranges of type number, the value must be equal to or lowe than... meaning the value meaning of a permissible value minimum_cardinality the minimum number of entries for a multivalued slot minimum_value for slots with ranges of type number, the value must be equal to or higher th... minus An enum expression that yields a list of permissible values that are to be su... mixin this slot or class can only be used as a mixin. mixins List of definitions to be mixed in. Targets may be any definition of the same... multivalued true means that slot can have more than one value name the unique name of the element within the context of the schema. Name is com... none_of holds if none of the expressions hold open_world if true, the the postconditions may be omitted in instance data, but it is va... partial_match if true then the pattern must match the whole string, as if enclosed in ^...$ pattern the string value of the slot must conform to this regular expression expresse... permissible_values A list of possible values for a slot range postconditions an expression that must hold for an instance of the class, if the preconditio... preconditions an expression that must hold in order for the rule to be applicable to an ins... prefix_prefix the nsname (sans ':' for a given prefix) prefix_reference A URI associated with a given prefix prefixes prefix / URI definitions to be added to the context beyond those fetched from... pv_formula Defines the specific formula to be used to generate the permissible values. range defines the type of the object of the slot. Given the following slot definit... range_expression A range that is described as a boolean expression combining existing ranges rank the relative order in which the element occurs, lower values are given preced... reachable_from Specifies a query for obtaining a list of permissible values based on graph r... recommended true means that the slot should be present in the loaded definition, but this... reflexive If s is reflexive, then i.s=i for all instances i reflexive_transitive_form_of transitive_form_of including the reflexive case relationship_types A list of relationship types (properties) that are used in a reachability que... repr the name of the python object that implements this type definition required true means that the slot must be present in the loaded definition rules the collection of rules that apply to all members of this class setting_key the variable name for a setting setting_value The value assigned for a setting settings A collection of global variable settings shared If True, then the relationship between the slot domain and range is many to o... slot_conditions expresses constraints on a group of slots for a class expression slot_definitions slot definitions slot_group allows for grouping of related slots into a grouping slot that serves the rol... slot_uri predicate of this slot for semantic web application slot_usage the redefinition of a slot in the context of the containing class definition. slots list of slot names that are applicable to a class source_nodes A list of nodes that are used in the reachability query source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... string_serialization Used on a slot that stores the string serialization of the containing object.... structured_pattern the string value of the slot must conform to the regular expression in the pa... subsets list of subsets referenced in this model symmetric If s is symmetric, and i.s=v, then v.s=i syntax the string value of the slot must conform to this regular expression expresse... text transitive If s is transitive, and i.s=z, and s.s=j, then i.s=j transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... traverse_up True if the direction of the reachability query is reversed and ancestors are... tree_root indicator that this is the root class in tree structures type_uri The uri that defines the possible values for the type definition typeof Names a parent type union_of indicates that the domain element consists exactly of the members of the elem... unique_key_name name of the unique key unique_key_slots list of slot names that form a key unique_keys Set of unique keys for this slot Enumerations in subset Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"Specification"},{"location":"Specification/#specification","text":"A subset that includes all the metamodel elements that form part of the LinkML specification","title":"Specification"},{"location":"Specification/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Specification/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"Specification/#classes-in-subset","text":"Class Description ClassDefinition the definition of a class or interface ClassRule A rule that applies to instances of a class CommonMetadata Generic metadata shared across definitions EnumDefinition List of values that constrain the range of a slot EnumExpression An expression that constrains the range of a slot MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... Prefix prefix URI tuple ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... SchemaDefinition a collection of subset, type, slot and class definitions Setting assignment of a key to a value SlotDefinition the definition of a property or a slot SubsetDefinition the name and description of a subset TypeDefinition A data type definition. 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While multiple inherit... abstract 0..1 xsd:boolean an abstract class is a high level class or slot that is typically used to gro... mixin 0..1 xsd:boolean this slot or class can only be used as a mixin. mixins 0..* ClassDefinition List of definitions to be mixed in. Targets may be any definition of the same... apply_to 0..* ClassDefinition Used to extend class or slot definitions. For example, if we have a core sche... values_from 0..* xsd:anyURI The identifier of a \"value set\" -- a set of identifiers that form the possibl... created_by 0..1 xsd:anyURI agent that created the element created_on 0..1 xsd:dateTime time at which the element was created last_updated_on 0..1 xsd:dateTime time at which the element was last updated modified_by 0..1 xsd:anyURI agent that modified the element status 0..1 xsd:anyURI status of the element string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object.... name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"ClassDefinition"},{"location":"Specification/#classrule","text":"A rule that applies to instances of a class Name Cardinality and Range Description preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... bidirectional 0..1 xsd:boolean in addition to preconditions entailing postconditions, the postconditions ent... open_world 0..1 xsd:boolean if true, the the postconditions may be omitted in instance data, but it is va... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... deactivated 0..1 xsd:boolean a deactivated rule is not executed by the rules engine extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad...","title":"ClassRule"},{"location":"Specification/#commonmetadata","text":"Generic metadata shared across definitions Name Cardinality and Range Description description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"CommonMetadata"},{"location":"Specification/#enumdefinition","text":"List of values that constrain the range of a slot Name Cardinality and Range Description enum_uri 0..1 xsd:anyURI URI of the enum in an RDF environment code_set 0..1 xsd:anyURI the identifier of an enumeration code set. code_set_tag 0..1 xsd:string the version tag of the enumeration code set code_set_version 0..1 xsd:string the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values. permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values is_a 0..1 Definition specifies single-inheritance between classes or slots. While multiple inherit... abstract 0..1 xsd:boolean an abstract class is a high level class or slot that is typically used to gro... mixin 0..1 xsd:boolean this slot or class can only be used as a mixin. mixins 0..* Definition List of definitions to be mixed in. Targets may be any definition of the same... apply_to 0..* Definition Used to extend class or slot definitions. For example, if we have a core sche... values_from 0..* xsd:anyURI The identifier of a \"value set\" -- a set of identifiers that form the possibl... created_by 0..1 xsd:anyURI agent that created the element created_on 0..1 xsd:dateTime time at which the element was created last_updated_on 0..1 xsd:dateTime time at which the element was last updated modified_by 0..1 xsd:anyURI agent that modified the element status 0..1 xsd:anyURI status of the element string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object.... name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"EnumDefinition"},{"location":"Specification/#enumexpression","text":"An expression that constrains the range of a slot Name Cardinality and Range Description code_set 0..1 xsd:anyURI the identifier of an enumeration code set. code_set_tag 0..1 xsd:string the version tag of the enumeration code set code_set_version 0..1 xsd:string the version identifier of the enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values. permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values","title":"EnumExpression"},{"location":"Specification/#matchquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissivle values via a query that matches on properties of the external concepts Name Cardinality and Range Description identifier_pattern 0..1 xsd:string A regular expression that is used to obtain a set of identifiers from a sourc... source_ontology 0..1 xsd:anyURI An ontology or vocabulary or terminology that is used in a query to obtain a ...","title":"MatchQuery"},{"location":"Specification/#permissiblevalue","text":"a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description text 0..1 xsd:string description 0..1 recommended xsd:string a description of the element's purpose and use meaning 0..1 xsd:anyURI the value meaning of a permissible value unit 0..1 UnitOfMeasure an encoding of a unit extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"PermissibleValue"},{"location":"Specification/#prefix","text":"prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 xsd:string the nsname (sans ':' for a given prefix) prefix_reference 1..1 xsd:anyURI A URI associated with a given prefix","title":"Prefix"},{"location":"Specification/#reachabilityquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types Name Cardinality and Range Description source_ontology 0..1 xsd:anyURI An ontology or vocabulary or terminology that is used in a query to obtain a ... source_nodes 0..* xsd:anyURI A list of nodes that are used in the reachability query relationship_types 0..* xsd:anyURI A list of relationship types (properties) that are used in a reachability que... is_direct 0..1 xsd:boolean True if the reachability query should only include directly related nodes, if... include_self 0..1 xsd:boolean True if the query is reflexive traverse_up 0..1 xsd:boolean True if the direction of the reachability query is reversed and ancestors are...","title":"ReachabilityQuery"},{"location":"Specification/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 xsd:anyURI The official schema URI version 0..1 xsd:string particular version of schema imports 0..* xsd:anyURI other schemas that are included in this schema license 0..1 xsd:string license for the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... emit_prefixes 0..* xsd:string a list of Curie prefixes that are used in the representation of instances of ... default_curi_maps 0..* xsd:string ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes... default_prefix 0..1 xsd:string default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... subsets 0..* SubsetDefinition list of subsets referenced in this model types 0..* TypeDefinition data types used in the model enums 0..* EnumDefinition enumerated ranges slot_definitions 0..* SlotDefinition slot definitions classes 0..* ClassDefinition class definitions metamodel_version 0..1 xsd:string Version of the metamodel used to load the schema source_file 0..1 xsd:string name, uri or description of the source of the schema source_file_date 0..1 xsd:dateTime modification date of the source of the schema source_file_size 0..1 xsd:integer size in bytes of the source of the schema generation_date 0..1 xsd:dateTime date and time that the schema was loaded/generated slot_names_unique 0..1 xsd:boolean if true then induced/mangled slot names are not created for class_usage and a... settings 0..* Setting A collection of global variable settings categories 0..* xsd:anyURI controlled terms used to categorize an element keywords 0..* xsd:string Keywords or tags used to describe the element name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"SchemaDefinition"},{"location":"Specification/#setting","text":"assignment of a key to a value Name Cardinality and Range Description setting_key 0..1 xsd:string the variable name for a setting setting_value 1..1 xsd:string The value assigned for a setting","title":"Setting"},{"location":"Specification/#slotdefinition","text":"the definition of a property or a slot Name Cardinality and Range Description singular_name 0..1 xsd:string a name that is used in the singular form domain 0..1 ClassDefinition defines the type of the subject of the slot. Given the following slot defini... slot_uri 0..1 xsd:anyURI predicate of this slot for semantic web application multivalued 0..1 xsd:boolean true means that slot can have more than one value inherited 0..1 xsd:boolean true means that the value of a slot is inherited by subclasses readonly 0..1 xsd:string If present, slot is read only. Text explains why ifabsent 0..1 xsd:string function that provides a default value for the slot. Possible values for thi... list_elements_unique 0..1 xsd:boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 xsd:boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 xsd:boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container. identifier 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container. There can be... designates_type 0..1 xsd:boolean True means that the key slot(s) is used to determine the instantiation (types... alias 0..1 xsd:string the name used for a slot in the context of its owning class. If present, thi... owner 0..1 Definition the \"owner\" of the slot. It is the class if it appears in the slots list, oth... domain_of 0..* ClassDefinition the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context subproperty_of 0..1 SlotDefinition Ontology property which this slot is a subproperty of. Note: setting this pr... symmetric 0..1 xsd:boolean If s is symmetric, and i.s=v, then v.s=i reflexive 0..1 xsd:boolean If s is reflexive, then i.s=i for all instances i locally_reflexive 0..1 xsd:boolean If s is locally_reflexive, then i.s=i for all instances i where s if a class ... irreflexive 0..1 xsd:boolean If s is irreflexive, then there exists no i such i.s=i asymmetric 0..1 xsd:boolean If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have... transitive 0..1 xsd:boolean If s is transitive, and i.s=z, and s.s=j, then i.s=j inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... is_class_field 0..1 xsd:boolean indicates that for any instance, i, the domain of this slot will include an a... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case role 0..1 xsd:string a textual descriptor that indicates the role played by the slot range is_usage_slot 0..1 xsd:boolean True means that this slot was defined in a slot_usage situation usage_slot_name 0..1 xsd:string The name of the slot referenced in the slot_usage relational_role 0..1 RelationalRoleEnum the role a slot on a relationship class plays, for example, the subject, obje... slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 xsd:boolean true if this slot is a grouping slot path_rule 0..1 PathExpression a rule for inferring a slot assignment based on evaluating a path through a s... disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... children_are_mutually_disjoint 0..1 xsd:boolean If true then all direct is_a children are mutually disjoint and share no inst... union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot. Given the following slot definit... range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration required 0..1 xsd:boolean true means that the slot must be present in the loaded definition recommended 0..1 xsd:boolean true means that the slot should be present in the loaded definition, but this... inlined 0..1 xsd:boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 xsd:boolean True means that an inlined slot is represented as a list of range instances. ... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... unit 0..1 UnitOfMeasure an encoding of a unit implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_number 0..1 xsd:integer the slot must have range of a number and the value of the slot must equal the... equals_expression 0..1 xsd:string the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 xsd:integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 xsd:integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the values of the slot is multivalued with at least one member satisfying the... all_members 0..* SlotDefinition the value of the multiavlued slot is a list where all elements conform to the... none_of 0..* AnonymousSlotExpression holds if none of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold is_a 0..1 SlotDefinition specifies single-inheritance between classes or slots. While multiple inherit... abstract 0..1 xsd:boolean an abstract class is a high level class or slot that is typically used to gro... mixin 0..1 xsd:boolean this slot or class can only be used as a mixin. mixins 0..* SlotDefinition List of definitions to be mixed in. Targets may be any definition of the same... apply_to 0..* SlotDefinition Used to extend class or slot definitions. For example, if we have a core sche... values_from 0..* xsd:anyURI The identifier of a \"value set\" -- a set of identifiers that form the possibl... created_by 0..1 xsd:anyURI agent that created the element created_on 0..1 xsd:dateTime time at which the element was created last_updated_on 0..1 xsd:dateTime time at which the element was last updated modified_by 0..1 xsd:anyURI agent that modified the element status 0..1 xsd:anyURI status of the element string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object.... name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"SlotDefinition"},{"location":"Specification/#subsetdefinition","text":"the name and description of a subset Name Cardinality and Range Description name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"SubsetDefinition"},{"location":"Specification/#typedefinition","text":"A data type definition. Name Cardinality and Range Description typeof 0..1 TypeDefinition Names a parent type base 0..1 xsd:string python base type that implements this type definition type_uri 0..1 xsd:anyURI The uri that defines the possible values for the type definition repr 0..1 xsd:string the name of the python object that implements this type definition union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... unit 0..1 UnitOfMeasure an encoding of a unit implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_number 0..1 xsd:integer the slot must have range of a number and the value of the slot must equal the... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... none_of 0..* AnonymousTypeExpression holds if none of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold name 0..1 xsd:string the unique name of the element within the context of the schema. Name is com... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... definition_uri 0..1 xsd:anyURI the \"native\" URI of the element local_names 0..* LocalName conforms_to 0..1 xsd:string An established standard to which the element conforms. extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"TypeDefinition"},{"location":"Specification/#uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description unique_key_name 1..1 xsd:string name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key extensions 0..* Extension a tag/text tuple attached to an arbitrary element annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation description 0..1 recommended xsd:string a description of the element's purpose and use alt_descriptions 0..* AltDescription title 0..1 xsd:string the official title of the element deprecated 0..1 xsd:string Description of why and when this element will no longer be used todos 0..* xsd:string Outstanding issue that needs resolution notes 0..* xsd:string editorial notes about an element intended for internal consumption comments 0..* xsd:string notes and comments about an element intended for external consumption examples 0..* Example example usages of an element in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... from_schema 0..1 xsd:anyURI id of the schema that defined the element imported_from 0..1 xsd:string the imports entry that this element was derived from. Empty means primary so... source 0..1 xsd:anyURI A related resource from which the element is derived. in_language 0..1 xsd:string see_also 0..* xsd:anyURI a reference deprecated_element_has_exact_replacement 0..1 xsd:anyURI When an element is deprecated, it can be automatically replaced by this uri o... deprecated_element_has_possible_replacement 0..1 xsd:anyURI When an element is deprecated, it can be potentially replaced by this uri or ... aliases 0..* xsd:string structured_aliases 0..* StructuredAlias A list of structured_alias objects. mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have compa... exact_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have ident... close_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have close... related_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have relat... narrow_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have narro... broad_mappings 0..* xsd:anyURI A list of terms from different schemas or terminology systems that have broad... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced...","title":"UniqueKey"},{"location":"Specification/#slots-in-subset","text":"Slot Description abstract an abstract class is a high level class or slot that is typically used to gro... alias the name used for a slot in the context of its owning class. If present, thi... all_members the value of the multiavlued slot is a list where all elements conform to the... all_of holds if all of the expressions hold any_of holds if at least one of the expressions hold asymmetric If s is antisymmetric, and i.s=v where i is different from v, v.s cannot have... attributes Inline definition of slots base python base type that implements this type definition bidirectional in addition to preconditions entailing postconditions, the postconditions ent... class_uri URI of the class in an RDF environment classes class definitions classification_rules the collection of classification rules that apply to all members of this clas... code_set the identifier of an enumeration code set. concepts A list of identifiers that are used to construct a set of permissible values default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab default_range default slot range to be used if range element is omitted from a slot definit... designates_type True means that the key slot(s) is used to determine the instantiation (types... disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... domain defines the type of the subject of the slot. Given the following slot defini... elseconditions an expression that must hold for an instance of the class, if the preconditio... enum_range An inlined enumeration enum_uri URI of the enum in an RDF environment enums enumerated ranges equals_expression the value of the slot must equal the value of the evaluated expression equals_number_in the slot must have range number and the value of the slot must equal one of t... equals_string the slot must have range string and the value of the slot must equal the spec... equals_string_in the slot must have range string and the value of the slot must equal one of t... exactly_one_of holds if only one of the expressions hold from_schema id of the schema that defined the element has_member the values of the slot is multivalued with at least one member satisfying the... id The official schema URI id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... identifier True means that the key slot(s) uniquely identify the container. There can be... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... ifabsent function that provides a default value for the slot. Possible values for thi... implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... imports other schemas that are included in this schema inapplicable true means that the slot must not be present include An enum expression that yields a list of permissible values that are to be in... include_self True if the query is reflexive inherited true means that the value of a slot is inherited by subclasses inherits An enum definition that is used as the basis to create a new enum inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances. ... interpolated if true then the pattern is first string interpolated inverse indicates that any instance of d s r implies that there is also an instance o... irreflexive If s is irreflexive, then there exists no i such i.s=i is_a specifies single-inheritance between classes or slots. While multiple inherit... is_direct True if the reachability query should only include directly related nodes, if... is_grouping_slot true if this slot is a grouping slot key True means that the key slot(s) uniquely identify the container. list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... locally_reflexive If s is locally_reflexive, then i.s=i for all instances i where s if a class ... matches Specifies a match query that is used to calculate the list of permissible val... maximum_cardinality the maximum number of entries for a multivalued slot maximum_value for slots with ranges of type number, the value must be equal to or lowe than... meaning the value meaning of a permissible value minimum_cardinality the minimum number of entries for a multivalued slot minimum_value for slots with ranges of type number, the value must be equal to or higher th... minus An enum expression that yields a list of permissible values that are to be su... mixin this slot or class can only be used as a mixin. mixins List of definitions to be mixed in. Targets may be any definition of the same... multivalued true means that slot can have more than one value name the unique name of the element within the context of the schema. Name is com... none_of holds if none of the expressions hold open_world if true, the the postconditions may be omitted in instance data, but it is va... partial_match if true then the pattern must match the whole string, as if enclosed in ^...$ pattern the string value of the slot must conform to this regular expression expresse... permissible_values A list of possible values for a slot range postconditions an expression that must hold for an instance of the class, if the preconditio... preconditions an expression that must hold in order for the rule to be applicable to an ins... prefix_prefix the nsname (sans ':' for a given prefix) prefix_reference A URI associated with a given prefix prefixes prefix / URI definitions to be added to the context beyond those fetched from... pv_formula Defines the specific formula to be used to generate the permissible values. range defines the type of the object of the slot. Given the following slot definit... range_expression A range that is described as a boolean expression combining existing ranges rank the relative order in which the element occurs, lower values are given preced... reachable_from Specifies a query for obtaining a list of permissible values based on graph r... recommended true means that the slot should be present in the loaded definition, but this... reflexive If s is reflexive, then i.s=i for all instances i reflexive_transitive_form_of transitive_form_of including the reflexive case relationship_types A list of relationship types (properties) that are used in a reachability que... repr the name of the python object that implements this type definition required true means that the slot must be present in the loaded definition rules the collection of rules that apply to all members of this class setting_key the variable name for a setting setting_value The value assigned for a setting settings A collection of global variable settings shared If True, then the relationship between the slot domain and range is many to o... slot_conditions expresses constraints on a group of slots for a class expression slot_definitions slot definitions slot_group allows for grouping of related slots into a grouping slot that serves the rol... slot_uri predicate of this slot for semantic web application slot_usage the redefinition of a slot in the context of the containing class definition. slots list of slot names that are applicable to a class source_nodes A list of nodes that are used in the reachability query source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... string_serialization Used on a slot that stores the string serialization of the containing object.... structured_pattern the string value of the slot must conform to the regular expression in the pa... subsets list of subsets referenced in this model symmetric If s is symmetric, and i.s=v, then v.s=i syntax the string value of the slot must conform to this regular expression expresse... text transitive If s is transitive, and i.s=z, and s.s=j, then i.s=j transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... traverse_up True if the direction of the reachability query is reversed and ancestors are... tree_root indicator that this is the root class in tree structures type_uri The uri that defines the possible values for the type definition typeof Names a parent type union_of indicates that the domain element consists exactly of the members of the elem... unique_key_name name of the unique key unique_key_slots list of slot names that form a key unique_keys Set of unique keys for this slot","title":"Slots in subset"},{"location":"Specification/#enumerations-in-subset","text":"Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"Enumerations in subset"},{"location":"SpecificationSubset/","text":"Subset: SpecificationSubset _A subset that includes all the metamodel elements that form part of the normative LinkML specification. The complete LinkML specification can be found at linkml:specification _ URI: SpecificationSubset Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Classes in subset Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... ClassRule A rule that applies to instances of a class Setting assignment of a key to a value SchemaDefinition a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* Uriorcurie other schemas that are included in this schema rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element ClassDefinition an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 Boolean indicator that this is the root class in tree structures rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element SlotDefinition an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container alias 0..1 String the name used for a slot in the context of its owning class multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 String function that provides a default value for the slot list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 Boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 Boolean If s is symmetric, and i reflexive 0..1 Boolean If s is reflexive, then i locally_reflexive 0..1 Boolean If s is locally_reflexive, then i irreflexive 0..1 Boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 Boolean If s is antisymmetric, and i transitive 0..1 Boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 Boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* SlotDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element TypeDefinition an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 String python base type that implements this type definition repr 0..1 String the name of the python object that implements this type definition pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element EnumDefinition an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* Uriorcurie A list of identifiers that are used to construct a set of permissible values abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element SubsetDefinition an element that can be used to group other metamodel elements Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element Prefix prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) prefix_reference 1..1 Uri A URI associated with a given prefix PermissibleValue a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description text 1..1 String identifier meaning 0..1 Uriorcurie the value meaning of a permissible value rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... from_schema 0..1 Uri id of the schema that defined the element UniqueKey a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key from_schema 0..1 Uri id of the schema that defined the element MatchQuery A query that is used on an enum expression to dynamically obtain a set of permissivle values via a query that matches on properties of the external concepts Name Cardinality and Range Description identifier_pattern 0..1 String A regular expression that is used to obtain a set of identifiers from a sourc... source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types Name Cardinality and Range Description source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... include_self 0..1 Boolean True if the query is reflexive traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are... ClassRule A rule that applies to instances of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... bidirectional 0..1 Boolean in addition to preconditions entailing postconditions, the postconditions ent... open_world 0..1 Boolean if true, the the postconditions may be omitted in instance data, but it is va... from_schema 0..1 Uri id of the schema that defined the element Setting assignment of a key to a value Name Cardinality and Range Description setting_key 0..1 Ncname the variable name for a setting setting_value 1..1 String The value assigned for a setting Slots in subset Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class settings A collection of global variable settings text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... any_of holds if at least one of the expressions hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... from_schema id of the schema that defined the element abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... code_set the identifier of an enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string the slot must have range string and the value of the slot must equal the spec... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with ranges of type number, the value must be equal to or lowe than... interpolated if true then the pattern is first string interpolated partial_match if true then the pattern must match the whole string, as if enclosed in ^ syntax the string value of the slot must conform to this regular expression expresse... structured_pattern the string value of the slot must conform to the regular expression in the pa... string_serialization Used on a slot that stores the string serialization of the containing object setting_key the variable name for a setting setting_value The value assigned for a setting slot_group allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot true if this slot is a grouping slot Enumerations in subset Enumeration Description PvFormulaOptions The formula used to generate the set of permissible values from the code_set ...","title":"SpecificationSubset"},{"location":"SpecificationSubset/#subset-specificationsubset","text":"_A subset that includes all the metamodel elements that form part of the normative LinkML specification. The complete LinkML specification can be found at linkml:specification _ URI: SpecificationSubset","title":"Subset: SpecificationSubset"},{"location":"SpecificationSubset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SpecificationSubset/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SpecificationSubset/#classes-in-subset","text":"Class Description SchemaDefinition a collection of subset, type, slot and class definitions ClassDefinition an element whose instances are complex objects that may have slot-value assig... SlotDefinition an element that describes how instances are related to other instances TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SubsetDefinition an element that can be used to group other metamodel elements Prefix prefix URI tuple PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... ClassRule A rule that applies to instances of a class Setting assignment of a key to a value","title":"Classes in subset"},{"location":"SpecificationSubset/#schemadefinition","text":"a collection of subset, type, slot and class definitions Name Cardinality and Range Description id 1..1 Uri The official schema URI name 1..1 Ncname a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 String default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* Uriorcurie other schemas that are included in this schema rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"SchemaDefinition"},{"location":"SpecificationSubset/#classdefinition","text":"an element whose instances are complex objects that may have slot-value assignments Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier class_uri 0..1 Uriorcurie URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 Boolean indicator that this is the root class in tree structures rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"ClassDefinition"},{"location":"SpecificationSubset/#slotdefinition","text":"an element that describes how instances are related to other instances Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier slot_uri 0..1 Uriorcurie predicate of this slot for semantic web application identifier 0..1 Boolean True means that the key slot(s) uniquely identify the container alias 0..1 String the name used for a slot in the context of its owning class multivalued 0..1 Boolean true means that slot can have more than one value required 0..1 Boolean true means that the slot must be present in the loaded definition recommended 0..1 Boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 Boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 Boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 Boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 String function that provides a default value for the slot list_elements_unique 0..1 Boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 Boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 Boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 Boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 Boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 Boolean If s is symmetric, and i reflexive 0..1 Boolean If s is reflexive, then i locally_reflexive 0..1 Boolean If s is locally_reflexive, then i irreflexive 0..1 Boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 Boolean If s is antisymmetric, and i transitive 0..1 Boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 Boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* SlotDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 String the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 Integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 Integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the value of the slot is multivalued with at least one member satisfying the ... all_members 0..1 AnonymousSlotExpression the value of the slot is multivalued with all members satisfying the conditio... abstract 0..1 Boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 Boolean Indicates the class or slot is intended to be inherited from without being an... string_serialization 0..1 String Used on a slot that stores the string serialization of the containing object id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"SlotDefinition"},{"location":"SpecificationSubset/#typedefinition","text":"an element that whose instances are atomic scalar values that can be mapped to primitive types Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 String python base type that implements this type definition repr 0..1 String the name of the python object that implements this type definition pattern 0..1 String the string value of the slot must conform to this regular expression expresse... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"TypeDefinition"},{"location":"SpecificationSubset/#enumdefinition","text":"an element whose instances must be drawn from a specified set of permissible values Name Cardinality and Range Description name 1..1 String the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 Uriorcurie URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 Uriorcurie the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a 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lower values are given preced... id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 Uri id of the schema that defined the element","title":"SubsetDefinition"},{"location":"SpecificationSubset/#prefix","text":"prefix URI tuple Name Cardinality and Range Description prefix_prefix 0..1 Ncname the nsname (sans ':' for a given prefix) prefix_reference 1..1 Uri A URI associated with a given prefix","title":"Prefix"},{"location":"SpecificationSubset/#permissiblevalue","text":"a permissible value, accompanied by intended text and an optional mapping to a concept URI Name Cardinality and Range Description text 1..1 String identifier meaning 0..1 Uriorcurie the value meaning of a permissible value rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... from_schema 0..1 Uri id of the schema that defined the element","title":"PermissibleValue"},{"location":"SpecificationSubset/#uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... unique_key_name 1..1 String name of the unique key unique_key_slots 1..* SlotDefinition list of slot names that form a key from_schema 0..1 Uri id of the schema that defined the element","title":"UniqueKey"},{"location":"SpecificationSubset/#matchquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissivle values via a query that matches on properties of the external concepts Name Cardinality and Range Description identifier_pattern 0..1 String A regular expression that is used to obtain a set of identifiers from a sourc... source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ...","title":"MatchQuery"},{"location":"SpecificationSubset/#reachabilityquery","text":"A query that is used on an enum expression to dynamically obtain a set of permissible values via walking from a set of source nodes to a set of descendants or ancestors over a set of relationship types Name Cardinality and Range Description source_ontology 0..1 Uriorcurie An ontology or vocabulary or terminology that is used in a query to obtain a ... source_nodes 0..* Uriorcurie A list of nodes that are used in the reachability query relationship_types 0..* Uriorcurie A list of relationship types (properties) that are used in a reachability que... is_direct 0..1 Boolean True if the reachability query should only include directly related nodes, if... include_self 0..1 Boolean True if the query is reflexive traverse_up 0..1 Boolean True if the direction of the reachability query is reversed and ancestors are...","title":"ReachabilityQuery"},{"location":"SpecificationSubset/#classrule","text":"A rule that applies to instances of a class Name Cardinality and Range Description rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... preconditions 0..1 AnonymousClassExpression an expression that must hold in order for the rule to be applicable to an ins... postconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... elseconditions 0..1 AnonymousClassExpression an expression that must hold for an instance of the class, if the preconditio... bidirectional 0..1 Boolean in addition to preconditions entailing postconditions, the postconditions ent... open_world 0..1 Boolean if true, the the postconditions may be omitted in instance data, but it is va... from_schema 0..1 Uri id of the schema that defined the element","title":"ClassRule"},{"location":"SpecificationSubset/#setting","text":"assignment of a key to a value Name Cardinality and Range Description setting_key 0..1 Ncname the variable name for a setting setting_value 1..1 String The value assigned for a setting","title":"Setting"},{"location":"SpecificationSubset/#slots-in-subset","text":"Slot Description id The official schema URI name the unique name of the element within the context of the schema prefix_prefix the nsname (sans ':' for a given prefix) class_uri URI of the class that provides a semantic interpretation of the element in a ... slot_uri predicate of this slot for semantic web application type_uri The uri that defines the possible values for the type definition prefix_reference A URI associated with a given prefix classes An index to the collection of all class definitions in the schema slot_definitions An index to the collection of all slot definitions in the schema enums An index to the collection of all enum definitions in the schema identifier True means that the key slot(s) uniquely identify the container alias the name used for a slot in the context of its owning class multivalued true means that slot can have more than one value typeof Names a parent type subsets An index to the collection of all subset definitions in the schema required true means that the slot must be present in the loaded definition base python base type that implements this type definition recommended true means that the slot should be present in the loaded definition, but this... repr the name of the python object that implements this type definition prefixes prefix / URI definitions to be added to the context beyond those fetched from... is_a A primary parent class or slot from which inheritable metaslots are propagate... default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab mixins A collection of secondary parent classes or slots from which inheritable meta... default_range default slot range to be used if range element is omitted from a slot definit... slots collection of slot names that are applicable to a class settings A collection of global variable settings text imports other schemas that are included in this schema meaning the value meaning of a permissible value slot_usage the refinement of a slot in the context of the containing class definition inlined True means that keyed or identified slot appears in an outer structure by val... inlined_as_list True means that an inlined slot is represented as a list of range instances attributes Inline definition of slots tree_root indicator that this is the root class in tree structures pattern the string value of the slot must conform to this regular expression expresse... rank the relative order in which the element occurs, lower values are given preced... any_of holds if at least one of the expressions hold exactly_one_of holds if only one of the expressions hold none_of holds if none of the expressions hold all_of holds if all of the expressions hold preconditions an expression that must hold in order for the rule to be applicable to an ins... postconditions an expression that must hold for an instance of the class, if the preconditio... elseconditions an expression that must hold for an instance of the class, if the preconditio... id_prefixes the identifier of this class or slot must begin with the URIs referenced by t... from_schema id of the schema that defined the element abstract Indicates the class or slot cannot be directly instantiated and is intended f... mixin Indicates the class or slot is intended to be inherited from without being an... code_set the identifier of an enumeration code set pv_formula Defines the specific formula to be used to generate the permissible values permissible_values A list of possible values for a slot range enum_uri URI of the enum that provides a semantic interpretation of the element in a l... include An enum expression that yields a list of permissible values that are to be in... minus An enum expression that yields a list of permissible values that are to be su... inherits An enum definition that is used as the basis to create a new enum matches Specifies a match query that is used to calculate the list of permissible val... identifier_pattern A regular expression that is used to obtain a set of identifiers from a sourc... concepts A list of identifiers that are used to construct a set of permissible values reachable_from Specifies a query for obtaining a list of permissible values based on graph r... source_ontology An ontology or vocabulary or terminology that is used in a query to obtain a ... is_direct True if the reachability query should only include directly related nodes, if... traverse_up True if the direction of the reachability query is reversed and ancestors are... include_self True if the query is reflexive relationship_types A list of relationship types (properties) that are used in a reachability que... source_nodes A list of nodes that are used in the reachability query enum_range An inlined enumeration range_expression A range that is described as a boolean expression combining existing ranges bidirectional in addition to preconditions entailing postconditions, the postconditions ent... open_world if true, the the postconditions may be omitted in instance data, but it is va... rules the collection of rules that apply to all members of this class classification_rules the collection of classification rules that apply to all members of this clas... slot_conditions expresses constraints on a group of slots for a class expression union_of indicates that the domain element consists exactly of the members of the elem... unique_keys A collection of unique keys for this class unique_key_name name of the unique key unique_key_slots list of slot names that form a key domain defines the type of the subject of the slot range defines the type of the object of the slot inherited true means that the value of a slot is inherited by subclasses ifabsent function that provides a default value for the slot implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string the slot must have range string and the value of the slot must equal the spec... equals_expression the value of the slot must equal the value of the evaluated expression minimum_cardinality the minimum number of entries for a multivalued slot maximum_cardinality the maximum number of entries for a multivalued slot equals_string_in the slot must have range string and the value of the slot must equal one of t... equals_number_in the slot must have range number and the value of the slot must equal one of t... has_member the value of the slot is multivalued with at least one member satisfying the ... all_members the value of the slot is multivalued with all members satisfying the conditio... inapplicable true means that the slot must not be present list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be... list_elements_unique If True, then there must be no duplicates in the elements of a multivalued sl... shared If True, then the relationship between the slot domain and range is many to o... key True means that the key slot(s) uniquely identify the container designates_type True means that the key slot(s) is used to determine the instantiation (types... disjoint_with Two classes are disjoint if they have no instances in common, two slots are d... symmetric If s is symmetric, and i asymmetric If s is antisymmetric, and i reflexive If s is reflexive, then i irreflexive If s is irreflexive, then there exists no i such i locally_reflexive If s is locally_reflexive, then i transitive If s is transitive, and i transitive_form_of If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of transitive_form_of including the reflexive case inverse indicates that any instance of d s r implies that there is also an instance o... minimum_value for slots with ranges of type number, the value must be equal to or higher th... maximum_value for slots with 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subset"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"StructuredAlias/","text":"Class: StructuredAlias object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) URI: skosxl:Label classDiagram class StructuredAlias Expression <|-- StructuredAlias Extensible <|-- StructuredAlias Annotatable <|-- StructuredAlias CommonMetadata <|-- StructuredAlias StructuredAlias : alias_predicate StructuredAlias : aliases StructuredAlias : alt_descriptions StructuredAlias : annotations StructuredAlias : broad_mappings StructuredAlias : categories StructuredAlias : close_mappings StructuredAlias : comments StructuredAlias : deprecated StructuredAlias : deprecated_element_has_exact_replacement StructuredAlias : deprecated_element_has_possible_replacement StructuredAlias : description StructuredAlias : exact_mappings StructuredAlias : examples StructuredAlias : extensions StructuredAlias : from_schema StructuredAlias : imported_from StructuredAlias : in_language StructuredAlias : in_subset StructuredAlias : literal_form StructuredAlias : mappings StructuredAlias : narrow_mappings StructuredAlias : notes StructuredAlias : rank StructuredAlias : related_mappings StructuredAlias : see_also StructuredAlias : source StructuredAlias : structured_aliases StructuredAlias : title StructuredAlias : todos Inheritance StructuredAlias [ Expression Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance literal_form 1..1 String The literal lexical form of a structured alias direct alias_predicate 0..1 recommended AliasPredicateEnum The relationship between an element and its alias direct categories 0..* Uriorcurie controlled terms used to categorize an element direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used CommonMetadata structured_aliases range StructuredAlias Element structured_aliases range StructuredAlias SchemaDefinition structured_aliases range StructuredAlias TypeDefinition structured_aliases range StructuredAlias SubsetDefinition structured_aliases range StructuredAlias Definition structured_aliases range StructuredAlias EnumDefinition structured_aliases range StructuredAlias StructuredAlias literal_form domain StructuredAlias StructuredAlias alias_predicate domain StructuredAlias StructuredAlias structured_aliases range StructuredAlias AnonymousExpression structured_aliases range StructuredAlias PathExpression structured_aliases range StructuredAlias AnonymousSlotExpression structured_aliases range StructuredAlias SlotDefinition structured_aliases range StructuredAlias AnonymousClassExpression structured_aliases range StructuredAlias ClassDefinition structured_aliases range StructuredAlias ClassRule structured_aliases range StructuredAlias PatternExpression structured_aliases range StructuredAlias ImportExpression structured_aliases range StructuredAlias PermissibleValue structured_aliases range StructuredAlias UniqueKey structured_aliases range StructuredAlias Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self skosxl:Label native linkml:StructuredAlias LinkML Source Direct name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slots: - literal_form - alias_predicate - categories slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias class_uri: skosxl:Label Induced name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias attributes: literal_form: name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form owner: structured_alias domain_of: - structured_alias range: string required: true alias_predicate: name: alias_predicate description: 'The relationship between an element and its alias ' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: structured_alias slot_uri: rdf:predicate alias: predicate owner: structured_alias domain_of: - structured_alias range: alias_predicate_enum recommended: true categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: structured_alias domain_of: - schema_definition - structured_alias - schema_definition - structured_alias range: uriorcurie extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: structured_alias domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: structured_alias domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: structured_alias domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: structured_alias domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: structured_alias domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: structured_alias domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: structured_alias domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: structured_alias domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: structured_alias domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: structured_alias domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: structured_alias domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: structured_alias domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: structured_alias domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: structured_alias domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: structured_alias domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: structured_alias domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: structured_alias domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: structured_alias domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: structured_alias domain_of: - common_metadata - class_rule range: integer class_uri: skosxl:Label","title":"Class: StructuredAlias"},{"location":"StructuredAlias/#class-structuredalias","text":"object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) URI: skosxl:Label classDiagram class StructuredAlias Expression <|-- StructuredAlias Extensible <|-- StructuredAlias Annotatable <|-- StructuredAlias CommonMetadata <|-- StructuredAlias StructuredAlias : alias_predicate StructuredAlias : aliases StructuredAlias : alt_descriptions StructuredAlias : annotations StructuredAlias : broad_mappings StructuredAlias : categories StructuredAlias : close_mappings StructuredAlias : comments StructuredAlias : deprecated StructuredAlias : deprecated_element_has_exact_replacement StructuredAlias : deprecated_element_has_possible_replacement StructuredAlias : description StructuredAlias : exact_mappings StructuredAlias : examples StructuredAlias : extensions StructuredAlias : from_schema StructuredAlias : imported_from StructuredAlias : in_language StructuredAlias : in_subset StructuredAlias : literal_form StructuredAlias : mappings StructuredAlias : narrow_mappings StructuredAlias : notes StructuredAlias : rank StructuredAlias : related_mappings StructuredAlias : see_also StructuredAlias : source StructuredAlias : structured_aliases StructuredAlias : title StructuredAlias : todos","title":"Class: StructuredAlias"},{"location":"StructuredAlias/#inheritance","text":"StructuredAlias [ Expression Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"StructuredAlias/#slots","text":"Name Cardinality and Range Description Inheritance literal_form 1..1 String The literal lexical form of a structured alias direct alias_predicate 0..1 recommended AliasPredicateEnum The relationship between an element and its alias direct categories 0..* Uriorcurie controlled terms used to categorize an element direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"StructuredAlias/#usages","text":"used by used in type used CommonMetadata structured_aliases range StructuredAlias Element structured_aliases range StructuredAlias SchemaDefinition structured_aliases range StructuredAlias TypeDefinition structured_aliases range StructuredAlias SubsetDefinition structured_aliases range StructuredAlias Definition structured_aliases range StructuredAlias EnumDefinition structured_aliases range StructuredAlias StructuredAlias literal_form domain StructuredAlias StructuredAlias alias_predicate domain StructuredAlias StructuredAlias structured_aliases range StructuredAlias AnonymousExpression structured_aliases range StructuredAlias PathExpression structured_aliases range StructuredAlias AnonymousSlotExpression structured_aliases range StructuredAlias SlotDefinition structured_aliases range StructuredAlias AnonymousClassExpression structured_aliases range StructuredAlias ClassDefinition structured_aliases range StructuredAlias ClassRule structured_aliases range StructuredAlias PatternExpression structured_aliases range StructuredAlias ImportExpression structured_aliases range StructuredAlias PermissibleValue structured_aliases range StructuredAlias UniqueKey structured_aliases range StructuredAlias","title":"Usages"},{"location":"StructuredAlias/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"StructuredAlias/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"StructuredAlias/#mappings","text":"Mapping Type Mapped Value self skosxl:Label native linkml:StructuredAlias","title":"Mappings"},{"location":"StructuredAlias/#linkml-source","text":"","title":"LinkML Source"},{"location":"StructuredAlias/#direct","text":"name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slots: - literal_form - alias_predicate - categories slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias class_uri: skosxl:Label","title":"Direct"},{"location":"StructuredAlias/#induced","text":"name: structured_alias description: object that contains meta data about a synonym or alias including where it came from (source) and its scope (narrow, broad, etc.) from_schema: https://w3id.org/linkml/meta rank: 1000 mixins: - expression - extensible - annotatable - common_metadata slot_usage: categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym domain_of: - schema_definition - structured_alias - schema_definition - structured_alias attributes: literal_form: name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form owner: structured_alias domain_of: - structured_alias range: string required: true alias_predicate: name: alias_predicate description: 'The relationship between an element and its alias ' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: structured_alias slot_uri: rdf:predicate alias: predicate owner: structured_alias domain_of: - structured_alias range: alias_predicate_enum recommended: true categories: name: categories description: The category or categories of an alias. This can be drawn from any relevant vocabulary examples: - value: https://w3id.org/mod#acronym description: An acronym from_schema: https://w3id.org/linkml/meta rank: 1000 singular_name: category slot_uri: dcterms:subject multivalued: true alias: categories owner: structured_alias domain_of: - schema_definition - structured_alias - schema_definition - structured_alias range: uriorcurie extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: structured_alias domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: structured_alias domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: structured_alias domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: structured_alias domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: structured_alias domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: structured_alias domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: structured_alias domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: structured_alias domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: structured_alias domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: structured_alias domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: structured_alias domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: structured_alias domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: structured_alias domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: structured_alias domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: structured_alias domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: structured_alias domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: structured_alias domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: structured_alias domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: structured_alias domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: structured_alias domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: structured_alias domain_of: - common_metadata - class_rule range: integer class_uri: skosxl:Label","title":"Induced"},{"location":"SubsetDefinition/","text":"Class: SubsetDefinition an element that can be used to group other metamodel elements URI: linkml:SubsetDefinition classDiagram class SubsetDefinition Element <|-- SubsetDefinition SubsetDefinition : aliases SubsetDefinition : alt_descriptions SubsetDefinition : annotations SubsetDefinition : broad_mappings SubsetDefinition : close_mappings SubsetDefinition : comments SubsetDefinition : conforms_to SubsetDefinition : definition_uri SubsetDefinition : deprecated SubsetDefinition : deprecated_element_has_exact_replacement SubsetDefinition : deprecated_element_has_possible_replacement SubsetDefinition : description SubsetDefinition : exact_mappings SubsetDefinition : examples SubsetDefinition : extensions SubsetDefinition : from_schema SubsetDefinition : id_prefixes SubsetDefinition : imported_from SubsetDefinition : in_language SubsetDefinition : in_subset SubsetDefinition : local_names SubsetDefinition : mappings SubsetDefinition : name SubsetDefinition : narrow_mappings SubsetDefinition : notes SubsetDefinition : rank SubsetDefinition : related_mappings SubsetDefinition : see_also SubsetDefinition : source SubsetDefinition : structured_aliases SubsetDefinition : title SubsetDefinition : todos Inheritance Element [ Extensible Annotatable CommonMetadata ] SubsetDefinition Slots Name Cardinality and Range Description Inheritance name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used CommonMetadata in_subset range SubsetDefinition Element in_subset range SubsetDefinition SchemaDefinition subsets range SubsetDefinition SchemaDefinition in_subset range SubsetDefinition TypeDefinition in_subset range SubsetDefinition SubsetDefinition in_subset range SubsetDefinition Definition in_subset range SubsetDefinition EnumDefinition in_subset range SubsetDefinition StructuredAlias in_subset range SubsetDefinition AnonymousExpression in_subset range SubsetDefinition PathExpression in_subset range SubsetDefinition AnonymousSlotExpression in_subset range SubsetDefinition SlotDefinition in_subset range SubsetDefinition AnonymousClassExpression in_subset range SubsetDefinition ClassDefinition in_subset range SubsetDefinition ClassRule in_subset range SubsetDefinition PatternExpression in_subset range SubsetDefinition ImportExpression in_subset range SubsetDefinition PermissibleValue in_subset range SubsetDefinition UniqueKey in_subset range SubsetDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:SubsetDefinition native linkml:SubsetDefinition LinkML Source Direct name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element Induced name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: subset_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: subset_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: subset_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: subset_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: subset_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: subset_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: subset_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: subset_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: subset_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: subset_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: subset_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: subset_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: subset_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: subset_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: subset_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: subset_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: subset_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: subset_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: subset_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: subset_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: subset_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: subset_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: subset_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: subset_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: SubsetDefinition"},{"location":"SubsetDefinition/#class-subsetdefinition","text":"an element that can be used to group other metamodel elements URI: linkml:SubsetDefinition classDiagram class SubsetDefinition Element <|-- SubsetDefinition SubsetDefinition : aliases SubsetDefinition : alt_descriptions SubsetDefinition : annotations SubsetDefinition : broad_mappings SubsetDefinition : close_mappings SubsetDefinition : comments SubsetDefinition : conforms_to SubsetDefinition : definition_uri SubsetDefinition : deprecated SubsetDefinition : deprecated_element_has_exact_replacement SubsetDefinition : deprecated_element_has_possible_replacement SubsetDefinition : description SubsetDefinition : exact_mappings SubsetDefinition : examples SubsetDefinition : extensions SubsetDefinition : from_schema SubsetDefinition : id_prefixes SubsetDefinition : imported_from SubsetDefinition : in_language SubsetDefinition : in_subset SubsetDefinition : local_names SubsetDefinition : mappings SubsetDefinition : name SubsetDefinition : narrow_mappings SubsetDefinition : notes SubsetDefinition : rank SubsetDefinition : related_mappings SubsetDefinition : see_also SubsetDefinition : source SubsetDefinition : structured_aliases SubsetDefinition : title SubsetDefinition : todos","title":"Class: SubsetDefinition"},{"location":"SubsetDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] SubsetDefinition","title":"Inheritance"},{"location":"SubsetDefinition/#slots","text":"Name Cardinality and Range Description Inheritance name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"SubsetDefinition/#usages","text":"used by used in type used CommonMetadata in_subset range SubsetDefinition Element in_subset range SubsetDefinition SchemaDefinition subsets range SubsetDefinition SchemaDefinition in_subset range SubsetDefinition TypeDefinition in_subset range SubsetDefinition SubsetDefinition in_subset range SubsetDefinition Definition in_subset range SubsetDefinition EnumDefinition in_subset range SubsetDefinition StructuredAlias in_subset range SubsetDefinition AnonymousExpression in_subset range SubsetDefinition PathExpression in_subset range SubsetDefinition AnonymousSlotExpression in_subset range SubsetDefinition SlotDefinition in_subset range SubsetDefinition AnonymousClassExpression in_subset range SubsetDefinition ClassDefinition in_subset range SubsetDefinition ClassRule in_subset range SubsetDefinition PatternExpression in_subset range SubsetDefinition ImportExpression in_subset range SubsetDefinition PermissibleValue in_subset range SubsetDefinition UniqueKey in_subset range SubsetDefinition","title":"Usages"},{"location":"SubsetDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"SubsetDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"SubsetDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:SubsetDefinition native linkml:SubsetDefinition","title":"Mappings"},{"location":"SubsetDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"SubsetDefinition/#direct","text":"name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element","title":"Direct"},{"location":"SubsetDefinition/#induced","text":"name: subset_definition description: an element that can be used to group other metamodel elements in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 6 is_a: element attributes: name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: subset_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: subset_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: subset_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: subset_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: subset_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: subset_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: subset_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: subset_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: subset_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: subset_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: subset_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: subset_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: subset_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: subset_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: subset_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: subset_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: subset_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: subset_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: subset_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: subset_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: subset_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: subset_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: subset_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: subset_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: subset_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: subset_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"Time/","text":"Type: Time A time object represents a (local) time of day, independent of any particular day URI: xsd:dateTime base : XSDTime uri : xsd:dateTime repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Time"},{"location":"Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: xsd:dateTime base : XSDTime uri : xsd:dateTime repr : str","title":"Type: Time"},{"location":"Time/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Time/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"TypeDefinition/","text":"Class: TypeDefinition an element that whose instances are atomic scalar values that can be mapped to primitive types URI: linkml:TypeDefinition classDiagram class TypeDefinition TypeExpression <|-- TypeDefinition Element <|-- TypeDefinition TypeDefinition : aliases TypeDefinition : all_of TypeDefinition : alt_descriptions TypeDefinition : annotations TypeDefinition : any_of TypeDefinition : base TypeDefinition : broad_mappings TypeDefinition : close_mappings TypeDefinition : comments TypeDefinition : conforms_to TypeDefinition : definition_uri TypeDefinition : deprecated TypeDefinition : deprecated_element_has_exact_replacement TypeDefinition : deprecated_element_has_possible_replacement TypeDefinition : description TypeDefinition : equals_number TypeDefinition : equals_string TypeDefinition : equals_string_in TypeDefinition : exact_mappings TypeDefinition : exactly_one_of TypeDefinition : examples TypeDefinition : extensions TypeDefinition : from_schema TypeDefinition : id_prefixes TypeDefinition : implicit_prefix TypeDefinition : imported_from TypeDefinition : in_language TypeDefinition : in_subset TypeDefinition : local_names TypeDefinition : mappings TypeDefinition : maximum_value TypeDefinition : minimum_value TypeDefinition : name TypeDefinition : narrow_mappings TypeDefinition : none_of TypeDefinition : notes TypeDefinition : pattern TypeDefinition : rank TypeDefinition : related_mappings TypeDefinition : repr TypeDefinition : see_also TypeDefinition : source TypeDefinition : structured_aliases TypeDefinition : structured_pattern TypeDefinition : title TypeDefinition : todos TypeDefinition : type_uri TypeDefinition : typeof TypeDefinition : union_of TypeDefinition : unit Inheritance Element [ Extensible Annotatable CommonMetadata ] TypeDefinition [ TypeExpression ] Slots Name Cardinality and Range Description Inheritance typeof 0..1 TypeDefinition Names a parent type direct base 0..1 String python base type that implements this type definition direct type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition direct repr 0..1 String the name of the python object that implements this type definition direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct pattern 0..1 String the string value of the slot must conform to this regular expression expresse... TypeExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression none_of 0..* AnonymousTypeExpression holds if none of the expressions hold TypeExpression exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold TypeExpression any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold TypeExpression all_of 0..* AnonymousTypeExpression holds if all of the expressions hold TypeExpression name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used SchemaDefinition default_range range TypeDefinition SchemaDefinition types range TypeDefinition TypeDefinition typeof domain TypeDefinition TypeDefinition typeof range TypeDefinition TypeDefinition base domain TypeDefinition TypeDefinition type_uri domain TypeDefinition TypeDefinition repr domain TypeDefinition TypeDefinition union_of range TypeDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:TypeDefinition native linkml:TypeDefinition LinkML Source Direct name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slots: - typeof - base - type_uri - repr - union_of slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition Induced name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition attributes: typeof: name: typeof description: Names a parent type comments: - the target type definition of the typeof slot is referred to as the \"parent type\" - the type definition containing the typeof slot is referred to as the \"child type\" - type definitions without a typeof slot are referred to as a \"root type\" in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 7 domain: type_definition alias: typeof owner: type_definition domain_of: - type_definition range: type_definition base: name: base description: python base type that implements this type definition comments: - every root type must have a base - the base is inherited by child types but may be overriden. Base compatibility is not checked. in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 8 domain: type_definition inherited: true alias: base owner: type_definition domain_of: - type_definition range: string type_uri: name: type_uri description: The uri that defines the possible values for the type definition comments: - uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) - every root type must have a type uri in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: type_definition inherited: true alias: uri owner: type_definition domain_of: - type_definition range: uriorcurie repr: name: repr description: the name of the python object that implements this type definition in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: type_definition inherited: true alias: repr owner: type_definition domain_of: - type_definition range: string union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: type_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_definition domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: type_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: type_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: type_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: type_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: type_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: type_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: type_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: type_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: type_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: type_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: type_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: type_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: type_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: type_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: type_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: type_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: type_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: type_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: type_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: type_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: type_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: type_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: type_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: type_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: type_definition domain_of: - common_metadata - class_rule range: integer","title":"Class: TypeDefinition"},{"location":"TypeDefinition/#class-typedefinition","text":"an element that whose instances are atomic scalar values that can be mapped to primitive types URI: linkml:TypeDefinition classDiagram class TypeDefinition TypeExpression <|-- TypeDefinition Element <|-- TypeDefinition TypeDefinition : aliases TypeDefinition : all_of TypeDefinition : alt_descriptions TypeDefinition : annotations TypeDefinition : any_of TypeDefinition : base TypeDefinition : broad_mappings TypeDefinition : close_mappings TypeDefinition : comments TypeDefinition : conforms_to TypeDefinition : definition_uri TypeDefinition : deprecated TypeDefinition : deprecated_element_has_exact_replacement TypeDefinition : deprecated_element_has_possible_replacement TypeDefinition : description TypeDefinition : equals_number TypeDefinition : equals_string TypeDefinition : equals_string_in TypeDefinition : exact_mappings TypeDefinition : exactly_one_of TypeDefinition : examples TypeDefinition : extensions TypeDefinition : from_schema TypeDefinition : id_prefixes TypeDefinition : implicit_prefix TypeDefinition : imported_from TypeDefinition : in_language TypeDefinition : in_subset TypeDefinition : local_names TypeDefinition : mappings TypeDefinition : maximum_value TypeDefinition : minimum_value TypeDefinition : name TypeDefinition : narrow_mappings TypeDefinition : none_of TypeDefinition : notes TypeDefinition : pattern TypeDefinition : rank TypeDefinition : related_mappings TypeDefinition : repr TypeDefinition : see_also TypeDefinition : source TypeDefinition : structured_aliases TypeDefinition : structured_pattern TypeDefinition : title TypeDefinition : todos TypeDefinition : type_uri TypeDefinition : typeof TypeDefinition : union_of TypeDefinition : unit","title":"Class: TypeDefinition"},{"location":"TypeDefinition/#inheritance","text":"Element [ Extensible Annotatable CommonMetadata ] TypeDefinition [ TypeExpression ]","title":"Inheritance"},{"location":"TypeDefinition/#slots","text":"Name Cardinality and Range Description Inheritance typeof 0..1 TypeDefinition Names a parent type direct base 0..1 String python base type that implements this type definition direct type_uri 0..1 Uriorcurie The uri that defines the possible values for the type definition direct repr 0..1 String the name of the python object that implements this type definition direct union_of 0..* Element indicates that the domain element consists exactly of the members of the elem... direct pattern 0..1 String the string value of the slot must conform to this regular expression expresse... TypeExpression structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... TypeExpression unit 0..1 UnitOfMeasure an encoding of a unit TypeExpression implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... TypeExpression equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... TypeExpression equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... TypeExpression equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... TypeExpression minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... TypeExpression maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... TypeExpression none_of 0..* AnonymousTypeExpression holds if none of the expressions hold TypeExpression exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold TypeExpression any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold TypeExpression all_of 0..* AnonymousTypeExpression holds if all of the expressions hold TypeExpression name 1..1 String the unique name of the element within the context of the schema Element id_prefixes 0..* Ncname the identifier of this class or slot must begin with the URIs referenced by t... Element definition_uri 0..1 Uriorcurie the \"native\" URI of the element Element local_names 0..* LocalName Element conforms_to 0..1 String An established standard to which the element conforms Element extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"TypeDefinition/#usages","text":"used by used in type used SchemaDefinition default_range range TypeDefinition SchemaDefinition types range TypeDefinition TypeDefinition typeof domain TypeDefinition TypeDefinition typeof range TypeDefinition TypeDefinition base domain TypeDefinition TypeDefinition type_uri domain TypeDefinition TypeDefinition repr domain TypeDefinition TypeDefinition union_of range TypeDefinition","title":"Usages"},{"location":"TypeDefinition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TypeDefinition/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"TypeDefinition/#mappings","text":"Mapping Type Mapped Value self linkml:TypeDefinition native linkml:TypeDefinition","title":"Mappings"},{"location":"TypeDefinition/#linkml-source","text":"","title":"LinkML Source"},{"location":"TypeDefinition/#direct","text":"name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slots: - typeof - base - type_uri - repr - union_of slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition","title":"Direct"},{"location":"TypeDefinition/#induced","text":"name: type_definition description: an element that whose instances are atomic scalar values that can be mapped to primitive types in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 4 is_a: element mixins: - type_expression slot_usage: union_of: name: union_of domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition attributes: typeof: name: typeof description: Names a parent type comments: - the target type definition of the typeof slot is referred to as the \"parent type\" - the type definition containing the typeof slot is referred to as the \"child type\" - type definitions without a typeof slot are referred to as a \"root type\" in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 7 domain: type_definition alias: typeof owner: type_definition domain_of: - type_definition range: type_definition base: name: base description: python base type that implements this type definition comments: - every root type must have a base - the base is inherited by child types but may be overriden. Base compatibility is not checked. in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 8 domain: type_definition inherited: true alias: base owner: type_definition domain_of: - type_definition range: string type_uri: name: type_uri description: The uri that defines the possible values for the type definition comments: - uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps) - every root type must have a type uri in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: type_definition inherited: true alias: uri owner: type_definition domain_of: - type_definition range: uriorcurie repr: name: repr description: the name of the python object that implements this type definition in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: type_definition inherited: true alias: repr owner: type_definition domain_of: - type_definition range: string union_of: name: union_of description: indicates that the domain element consists exactly of the members of the element in the range. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: union_of owner: type_definition domain_of: - type_definition - slot_definition - class_definition - type_definition - slot_definition - class_definition range: type_definition pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_definition domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_definition domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_definition domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_definition domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_definition domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_definition domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_definition domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:or rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:and rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_definition domain_of: - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression name: name: name description: the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. in_subset: - SpecificationSubset - OwlProfile - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Data_element_name aliases: - short name - unique name exact_mappings: - schema:name rank: 1 domain: element slot_uri: rdfs:label identifier: true alias: name owner: type_definition domain_of: - element range: string id_prefixes: name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes owner: type_definition domain_of: - element range: ncname definition_uri: name: definition_uri description: the \"native\" URI of the element comments: - Formed by combining the default_prefix with the mangled element from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: filled in by the schema loader alias: definition_uri owner: type_definition domain_of: - element range: uriorcurie local_names: name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names owner: type_definition domain_of: - element range: local_name inlined: true conforms_to: name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to owner: type_definition domain_of: - element range: string extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: type_definition domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: type_definition domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: type_definition domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: type_definition domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: type_definition domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: type_definition domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: type_definition domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: type_definition domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: type_definition domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: type_definition domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: type_definition domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: type_definition domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: type_definition domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: type_definition domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: type_definition domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: type_definition domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: type_definition domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: type_definition domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: type_definition domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: type_definition domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: type_definition domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: type_definition domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"TypeExpression/","text":"Class: TypeExpression URI: linkml:TypeExpression classDiagram class TypeExpression Expression <|-- TypeExpression TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit TypeExpression <|-- AnonymousTypeExpression TypeExpression <|-- TypeDefinition TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit Inheritance Expression TypeExpression Slots Name Cardinality and Range Description Inheritance pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct none_of 0..* Expression holds if none of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct any_of 0..* Expression holds if at least one of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct Mixin Usage mixed into description AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:TypeExpression native linkml:TypeExpression LinkML Source Direct name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slots: - pattern - structured_pattern - unit - implicit_prefix - equals_string - equals_string_in - equals_number - minimum_value - maximum_value - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression Induced name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Class: TypeExpression"},{"location":"TypeExpression/#class-typeexpression","text":"URI: linkml:TypeExpression classDiagram class TypeExpression Expression <|-- TypeExpression TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit TypeExpression <|-- AnonymousTypeExpression TypeExpression <|-- TypeDefinition TypeExpression : all_of TypeExpression : any_of TypeExpression : equals_number TypeExpression : equals_string TypeExpression : equals_string_in TypeExpression : exactly_one_of TypeExpression : implicit_prefix TypeExpression : maximum_value TypeExpression : minimum_value TypeExpression : none_of TypeExpression : pattern TypeExpression : structured_pattern TypeExpression : unit","title":"Class: TypeExpression"},{"location":"TypeExpression/#inheritance","text":"Expression TypeExpression","title":"Inheritance"},{"location":"TypeExpression/#slots","text":"Name Cardinality and Range Description Inheritance pattern 0..1 String the string value of the slot must conform to this regular expression expresse... direct structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... direct unit 0..1 UnitOfMeasure an encoding of a unit direct implicit_prefix 0..1 String Causes the slot value to be interpreted as a uriorcurie after prefixing with ... direct equals_string 0..1 String the slot must have range string and the value of the slot must equal the spec... direct equals_string_in 0..* String the slot must have range string and the value of the slot must equal one of t... direct equals_number 0..1 Integer the slot must have range of a number and the value of the slot must equal the... direct minimum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or higher th... direct maximum_value 0..1 Integer for slots with ranges of type number, the value must be equal to or lowe than... direct none_of 0..* Expression holds if none of the expressions hold direct exactly_one_of 0..* Expression holds if only one of the expressions hold direct any_of 0..* Expression holds if at least one of the expressions hold direct all_of 0..* Expression holds if all of the expressions hold direct","title":"Slots"},{"location":"TypeExpression/#mixin-usage","text":"mixed into description AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t...","title":"Mixin Usage"},{"location":"TypeExpression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"TypeExpression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"TypeExpression/#mappings","text":"Mapping Type Mapped Value self linkml:TypeExpression native linkml:TypeExpression","title":"Mappings"},{"location":"TypeExpression/#linkml-source","text":"","title":"LinkML Source"},{"location":"TypeExpression/#direct","text":"name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slots: - pattern - structured_pattern - unit - implicit_prefix - equals_string - equals_string_in - equals_number - minimum_value - maximum_value - none_of - exactly_one_of - any_of - all_of slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Direct"},{"location":"TypeExpression/#induced","text":"name: type_expression from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: expression mixin: true slot_usage: any_of: name: any_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression none_of: name: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression attributes: pattern: name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern owner: type_expression domain_of: - type_expression - slot_expression range: string structured_pattern: name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern owner: type_expression domain_of: - type_expression - slot_expression range: pattern_expression unit: name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit owner: type_expression domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure implicit_prefix: name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string: name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string owner: type_expression domain_of: - type_expression - slot_expression range: string equals_string_in: name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in owner: type_expression domain_of: - type_expression - slot_expression range: string equals_number: name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number owner: type_expression domain_of: - type_expression - slot_expression range: integer minimum_value: name: minimum_value description: for slots with ranges of type number, the value must be equal to or higher than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - low value rank: 1000 domain: slot_definition inherited: true alias: minimum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer maximum_value: name: maximum_value description: for slots with ranges of type number, the value must be equal to or lowe than this in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - high value rank: 1000 domain: slot_definition inherited: true alias: maximum_value owner: type_expression domain_of: - type_expression - slot_expression range: integer none_of: name: none_of description: holds if none of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 105 is_a: boolean_slot multivalued: true alias: none_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression exactly_one_of: name: exactly_one_of description: holds if only one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression any_of: name: any_of description: holds if at least one of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 101 is_a: boolean_slot multivalued: true alias: any_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression all_of: name: all_of description: holds if all of the expressions hold from_schema: https://w3id.org/linkml/meta rank: 107 is_a: boolean_slot multivalued: true alias: all_of owner: type_expression domain_of: - type_expression - path_expression - slot_expression - class_expression - type_expression - path_expression - slot_expression - class_expression range: anonymous_type_expression","title":"Induced"},{"location":"UniqueKey/","text":"Class: UniqueKey a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey classDiagram class UniqueKey Extensible <|-- UniqueKey Annotatable <|-- UniqueKey CommonMetadata <|-- UniqueKey UniqueKey : aliases UniqueKey : alt_descriptions UniqueKey : annotations UniqueKey : broad_mappings UniqueKey : close_mappings UniqueKey : comments UniqueKey : deprecated UniqueKey : deprecated_element_has_exact_replacement UniqueKey : deprecated_element_has_possible_replacement UniqueKey : description UniqueKey : exact_mappings UniqueKey : examples UniqueKey : extensions UniqueKey : from_schema UniqueKey : imported_from UniqueKey : in_language UniqueKey : in_subset UniqueKey : mappings UniqueKey : narrow_mappings UniqueKey : notes UniqueKey : rank UniqueKey : related_mappings UniqueKey : see_also UniqueKey : source UniqueKey : structured_aliases UniqueKey : title UniqueKey : todos UniqueKey : unique_key_name UniqueKey : unique_key_slots Inheritance UniqueKey [ Extensible Annotatable CommonMetadata ] Slots Name Cardinality and Range Description Inheritance unique_key_name 1..1 String name of the unique key direct unique_key_slots 1..* SlotDefinition list of slot names that form a key direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata Usages used by used in type used ClassDefinition unique_keys range UniqueKey UniqueKey unique_key_name domain UniqueKey UniqueKey unique_key_slots domain UniqueKey Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta Mappings Mapping Type Mapped Value self linkml:UniqueKey native linkml:UniqueKey LinkML Source Direct name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata slots: - unique_key_name - unique_key_slots Induced name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata attributes: unique_key_name: name: unique_key_name description: name of the unique key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key key: true alias: unique_key_name owner: unique_key domain_of: - unique_key range: string required: true unique_key_slots: name: unique_key_slots description: list of slot names that form a key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key multivalued: true alias: unique_key_slots owner: unique_key domain_of: - unique_key range: slot_definition required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: unique_key domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: unique_key domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: unique_key domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: unique_key domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: unique_key domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: unique_key domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: unique_key domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: unique_key domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: unique_key domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: unique_key domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: unique_key domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: unique_key domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: unique_key domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: unique_key domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: unique_key domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: unique_key domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: unique_key domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: unique_key domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: unique_key domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: unique_key domain_of: - common_metadata - class_rule range: integer","title":"Class: UniqueKey"},{"location":"UniqueKey/#class-uniquekey","text":"a collection of slots whose values uniquely identify an instance of a class URI: linkml:UniqueKey classDiagram class UniqueKey Extensible <|-- UniqueKey Annotatable <|-- UniqueKey CommonMetadata <|-- UniqueKey UniqueKey : aliases UniqueKey : alt_descriptions UniqueKey : annotations UniqueKey : broad_mappings UniqueKey : close_mappings UniqueKey : comments UniqueKey : deprecated UniqueKey : deprecated_element_has_exact_replacement UniqueKey : deprecated_element_has_possible_replacement UniqueKey : description UniqueKey : exact_mappings UniqueKey : examples UniqueKey : extensions UniqueKey : from_schema UniqueKey : imported_from UniqueKey : in_language UniqueKey : in_subset UniqueKey : mappings UniqueKey : narrow_mappings UniqueKey : notes UniqueKey : rank UniqueKey : related_mappings UniqueKey : see_also UniqueKey : source UniqueKey : structured_aliases UniqueKey : title UniqueKey : todos UniqueKey : unique_key_name UniqueKey : unique_key_slots","title":"Class: UniqueKey"},{"location":"UniqueKey/#inheritance","text":"UniqueKey [ Extensible Annotatable CommonMetadata ]","title":"Inheritance"},{"location":"UniqueKey/#slots","text":"Name Cardinality and Range Description Inheritance unique_key_name 1..1 String name of the unique key direct unique_key_slots 1..* SlotDefinition list of slot names that form a key direct extensions 0..* Extension a tag/text tuple attached to an arbitrary element Extensible annotations 0..* Annotation a collection of tag/text tuples with the semantics of OWL Annotation Annotatable description 0..1 recommended String a description of the element's purpose and use CommonMetadata alt_descriptions 0..* AltDescription A sourced alternative description for an element CommonMetadata title 0..1 String the official title of the element CommonMetadata deprecated 0..1 String Description of why and when this element will no longer be used CommonMetadata todos 0..* String Outstanding issue that needs resolution CommonMetadata notes 0..* String editorial notes about an element intended for internal consumption CommonMetadata comments 0..* String notes and comments about an element intended for external consumption CommonMetadata examples 0..* Example example usages of an element CommonMetadata in_subset 0..* SubsetDefinition used to indicate membership of a term in a defined subset of terms used for a... CommonMetadata from_schema 0..1 Uri id of the schema that defined the element CommonMetadata imported_from 0..1 String the imports entry that this element was derived from CommonMetadata source 0..1 Uriorcurie A related resource from which the element is derived CommonMetadata in_language 0..1 String CommonMetadata see_also 0..* Uriorcurie a reference CommonMetadata deprecated_element_has_exact_replacement 0..1 Uriorcurie When an element is deprecated, it can be automatically replaced by this uri o... CommonMetadata deprecated_element_has_possible_replacement 0..1 Uriorcurie When an element is deprecated, it can be potentially replaced by this uri or ... CommonMetadata aliases 0..* String Alaternate names for the element CommonMetadata structured_aliases 0..* StructuredAlias A list of structured_alias objects CommonMetadata mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have compa... CommonMetadata exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... CommonMetadata close_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have close... CommonMetadata related_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have relat... CommonMetadata narrow_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have narro... CommonMetadata broad_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have broad... CommonMetadata rank 0..1 Integer the relative order in which the element occurs, lower values are given preced... CommonMetadata","title":"Slots"},{"location":"UniqueKey/#usages","text":"used by used in type used ClassDefinition unique_keys range UniqueKey UniqueKey unique_key_name domain UniqueKey UniqueKey unique_key_slots domain UniqueKey","title":"Usages"},{"location":"UniqueKey/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"UniqueKey/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"UniqueKey/#mappings","text":"Mapping Type Mapped Value self linkml:UniqueKey native linkml:UniqueKey","title":"Mappings"},{"location":"UniqueKey/#linkml-source","text":"","title":"LinkML Source"},{"location":"UniqueKey/#direct","text":"name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata slots: - unique_key_name - unique_key_slots","title":"Direct"},{"location":"UniqueKey/#induced","text":"name: unique_key description: a collection of slots whose values uniquely identify an instance of a class in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 20 mixins: - extensible - annotatable - common_metadata attributes: unique_key_name: name: unique_key_name description: name of the unique key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key key: true alias: unique_key_name owner: unique_key domain_of: - unique_key range: string required: true unique_key_slots: name: unique_key_slots description: list of slot names that form a key in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: unique_key multivalued: true alias: unique_key_slots owner: unique_key domain_of: - unique_key range: slot_definition required: true extensions: name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions owner: unique_key domain_of: - extension - extensible range: extension inlined: true annotations: name: annotations description: a collection of tag/text tuples with the semantics of OWL Annotation from_schema: https://w3id.org/linkml/annotations rank: 1000 is_a: extensions domain: annotatable multivalued: true alias: annotations owner: unique_key domain_of: - annotatable - annotation range: annotation inlined: true description: name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description owner: unique_key domain_of: - common_metadata - permissible_value range: string recommended: true alt_descriptions: name: alt_descriptions description: A sourced alternative description for an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - alternate definitions rank: 1000 domain: element multivalued: true alias: alt_descriptions owner: unique_key domain_of: - common_metadata range: alt_description inlined: true title: name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title owner: unique_key domain_of: - common_metadata range: string deprecated: name: deprecated description: Description of why and when this element will no longer be used in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:deprecated rank: 1000 domain: element alias: deprecated owner: unique_key domain_of: - common_metadata range: string todos: name: todos description: Outstanding issue that needs resolution in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: todos owner: unique_key domain_of: - common_metadata range: string notes: name: notes description: editorial notes about an element intended for internal consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:editorialNote multivalued: true alias: notes owner: unique_key domain_of: - common_metadata range: string comments: name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments owner: unique_key domain_of: - common_metadata range: string examples: name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples owner: unique_key domain_of: - common_metadata range: example inlined: true in_subset: name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset owner: unique_key domain_of: - common_metadata range: subset_definition from_schema: name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema owner: unique_key domain_of: - common_metadata range: uri imported_from: name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from owner: unique_key domain_of: - common_metadata range: string source: name: source description: A related resource from which the element is derived. comments: - The described resource may be derived from the related resource in whole or in part in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - origin - derived from close_mappings: - prov:wasDerivedFrom - schema:isBasedOn rank: 1000 domain: element slot_uri: dcterms:source alias: source owner: unique_key domain_of: - common_metadata range: uriorcurie in_language: name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language owner: unique_key domain_of: - common_metadata range: string see_also: name: see_also description: a reference in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: rdfs:seeAlso multivalued: true alias: see_also owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has exact replacement: name: deprecated element has exact replacement description: When an element is deprecated, it can be automatically replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - IAO:0100001 rank: 1000 alias: deprecated_element_has_exact_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie deprecated element has possible replacement: name: deprecated element has possible replacement description: When an element is deprecated, it can be potentially replaced by this uri or curie from_schema: https://w3id.org/linkml/mappings mappings: - OIO:consider rank: 1000 alias: deprecated_element_has_possible_replacement owner: unique_key domain_of: - common_metadata range: uriorcurie aliases: name: aliases description: Alaternate names for the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - synonyms - alternate names - alternative labels - designations exact_mappings: - schema:alternateName rank: 1000 domain: element slot_uri: skos:altLabel multivalued: true alias: aliases owner: unique_key domain_of: - common_metadata range: string structured_aliases: name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases owner: unique_key domain_of: - common_metadata range: structured_alias inlined: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings owner: unique_key domain_of: - common_metadata range: uriorcurie exact mappings: name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: unique_key domain_of: - common_metadata - UnitOfMeasure range: uriorcurie close mappings: name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie related mappings: name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie narrow mappings: name: narrow mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:narrowMatch multivalued: true inherited: false alias: narrow_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie broad mappings: name: broad mappings description: A list of terms from different schemas or terminology systems that have broader meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:broadMatch multivalued: true inherited: false alias: broad_mappings owner: unique_key domain_of: - common_metadata range: uriorcurie rank: name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank owner: unique_key domain_of: - common_metadata - class_rule range: integer","title":"Induced"},{"location":"UnitOfMeasure/","text":"Class: UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). URI: qudt:Unit classDiagram class UnitOfMeasure UnitOfMeasure : derivation UnitOfMeasure : exact_mappings UnitOfMeasure : has_quantity_kind UnitOfMeasure : iec61360code UnitOfMeasure : symbol UnitOfMeasure : ucum_code Slots Name Cardinality and Range Description Inheritance symbol 0..1 String name of the unit encoded as a symbol direct exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... direct ucum_code 0..1 recommended String associates a QUDT unit with its UCUM code (case-sensitive) direct derivation 0..1 String Expression for deriving this unit from other units direct has_quantity_kind 0..1 Uriorcurie Concept in a vocabulary or ontology that denotes the kind of quanity being me... direct iec61360code 0..1 String direct Usages used by used in type used TypeExpression unit range UnitOfMeasure AnonymousTypeExpression unit range UnitOfMeasure TypeDefinition unit range UnitOfMeasure SlotExpression unit range UnitOfMeasure AnonymousSlotExpression unit range UnitOfMeasure SlotDefinition unit range UnitOfMeasure PermissibleValue unit range UnitOfMeasure UnitOfMeasure ucum_code domain UnitOfMeasure Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units Mappings Mapping Type Mapped Value self qudt:Unit native linkml:UnitOfMeasure LinkML Source Direct name: UnitOfMeasure description: A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). from_schema: https://w3id.org/linkml/units rank: 1000 slots: - symbol - exact mappings - ucum_code - derivation - has_quantity_kind - iec61360code slot_usage: exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure class_uri: qudt:Unit any_of: - slot_conditions: ucum_code: name: ucum_code required: true - slot_conditions: iec61360code: name: iec61360code required: true - slot_conditions: symbol: name: symbol required: true - slot_conditions: exact_mappings: name: exact_mappings required: true Induced name: UnitOfMeasure description: A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). from_schema: https://w3id.org/linkml/units rank: 1000 slot_usage: exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure attributes: symbol: name: symbol description: name of the unit encoded as a symbol from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:symbol alias: symbol owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: UnitOfMeasure domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure range: uriorcurie ucum_code: name: ucum_code description: associates a QUDT unit with its UCUM code (case-sensitive). from_schema: https://w3id.org/linkml/units rank: 1000 domain: UnitOfMeasure slot_uri: qudt:ucumCode alias: ucum_code owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string recommended: true derivation: name: derivation description: Expression for deriving this unit from other units from_schema: https://w3id.org/linkml/units rank: 1000 alias: derivation owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string has_quantity_kind: name: has_quantity_kind description: Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length comments: - Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:hasQuantityKind alias: has_quantity_kind owner: UnitOfMeasure domain_of: - UnitOfMeasure range: uriorcurie iec61360code: name: iec61360code from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:iec61360Code alias: iec61360code owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string class_uri: qudt:Unit any_of: - slot_conditions: ucum_code: name: ucum_code required: true - slot_conditions: iec61360code: name: iec61360code required: true - slot_conditions: symbol: name: symbol required: true - slot_conditions: exact_mappings: name: exact_mappings required: true","title":"Class: UnitOfMeasure"},{"location":"UnitOfMeasure/#class-unitofmeasure","text":"A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). URI: qudt:Unit classDiagram class UnitOfMeasure UnitOfMeasure : derivation UnitOfMeasure : exact_mappings UnitOfMeasure : has_quantity_kind UnitOfMeasure : iec61360code UnitOfMeasure : symbol UnitOfMeasure : ucum_code","title":"Class: UnitOfMeasure"},{"location":"UnitOfMeasure/#slots","text":"Name Cardinality and Range Description Inheritance symbol 0..1 String name of the unit encoded as a symbol direct exact_mappings 0..* Uriorcurie A list of terms from different schemas or terminology systems that have ident... direct ucum_code 0..1 recommended String associates a QUDT unit with its UCUM code (case-sensitive) direct derivation 0..1 String Expression for deriving this unit from other units direct has_quantity_kind 0..1 Uriorcurie Concept in a vocabulary or ontology that denotes the kind of quanity being me... direct iec61360code 0..1 String direct","title":"Slots"},{"location":"UnitOfMeasure/#usages","text":"used by used in type used TypeExpression unit range UnitOfMeasure AnonymousTypeExpression unit range UnitOfMeasure TypeDefinition unit range UnitOfMeasure SlotExpression unit range UnitOfMeasure AnonymousSlotExpression unit range UnitOfMeasure SlotDefinition unit range UnitOfMeasure PermissibleValue unit range UnitOfMeasure UnitOfMeasure ucum_code domain UnitOfMeasure","title":"Usages"},{"location":"UnitOfMeasure/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"UnitOfMeasure/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"UnitOfMeasure/#mappings","text":"Mapping Type Mapped Value self qudt:Unit native linkml:UnitOfMeasure","title":"Mappings"},{"location":"UnitOfMeasure/#linkml-source","text":"","title":"LinkML Source"},{"location":"UnitOfMeasure/#direct","text":"name: UnitOfMeasure description: A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). from_schema: https://w3id.org/linkml/units rank: 1000 slots: - symbol - exact mappings - ucum_code - derivation - has_quantity_kind - iec61360code slot_usage: exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure class_uri: qudt:Unit any_of: - slot_conditions: ucum_code: name: ucum_code required: true - slot_conditions: iec61360code: name: iec61360code required: true - slot_conditions: symbol: name: symbol required: true - slot_conditions: exact_mappings: name: exact_mappings required: true","title":"Direct"},{"location":"UnitOfMeasure/#induced","text":"name: UnitOfMeasure description: A unit of measure, or unit, is a particular quantity value that has been chosen as a scale for measuring other quantities the same kind (more generally of equivalent dimension). from_schema: https://w3id.org/linkml/units rank: 1000 slot_usage: exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure attributes: symbol: name: symbol description: name of the unit encoded as a symbol from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:symbol alias: symbol owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string exact mappings: name: exact mappings description: Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT comments: - Do not use this to encode mappings to systems for which a dedicated field exists from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings owner: UnitOfMeasure domain_of: - common_metadata - UnitOfMeasure - common_metadata - UnitOfMeasure range: uriorcurie ucum_code: name: ucum_code description: associates a QUDT unit with its UCUM code (case-sensitive). from_schema: https://w3id.org/linkml/units rank: 1000 domain: UnitOfMeasure slot_uri: qudt:ucumCode alias: ucum_code owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string recommended: true derivation: name: derivation description: Expression for deriving this unit from other units from_schema: https://w3id.org/linkml/units rank: 1000 alias: derivation owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string has_quantity_kind: name: has_quantity_kind description: Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length comments: - Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:hasQuantityKind alias: has_quantity_kind owner: UnitOfMeasure domain_of: - UnitOfMeasure range: uriorcurie iec61360code: name: iec61360code from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:iec61360Code alias: iec61360code owner: UnitOfMeasure domain_of: - UnitOfMeasure range: string class_uri: qudt:Unit any_of: - slot_conditions: ucum_code: name: ucum_code required: true - slot_conditions: iec61360code: name: iec61360code required: true - slot_conditions: symbol: name: symbol required: true - slot_conditions: exact_mappings: name: exact_mappings required: true","title":"Induced"},{"location":"UnitOfMeasure_exact_mappings/","text":"Slot: exact mappings Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT URI: linkml:UnitOfMeasure_exact_mappings Domain and Range UnitOfMeasure \u2192 0..* Uriorcurie Parents is_a: exact mappings Children Used by UnitOfMeasure Other properties Mappings: skos:exactMatch Comments: Do not use this to encode mappings to systems for which a dedicated field exists","title":"Slot: exact mappings"},{"location":"UnitOfMeasure_exact_mappings/#slot-exact-mappings","text":"Used to link a unit to equivalent concepts in ontologies such as UO, SNOMED, OEM, OBOE, NCIT URI: linkml:UnitOfMeasure_exact_mappings","title":"Slot: exact mappings"},{"location":"UnitOfMeasure_exact_mappings/#domain-and-range","text":"UnitOfMeasure \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"UnitOfMeasure_exact_mappings/#parents","text":"is_a: exact mappings","title":"Parents"},{"location":"UnitOfMeasure_exact_mappings/#children","text":"","title":"Children"},{"location":"UnitOfMeasure_exact_mappings/#used-by","text":"UnitOfMeasure","title":"Used by"},{"location":"UnitOfMeasure_exact_mappings/#other-properties","text":"Mappings: skos:exactMatch Comments: Do not use this to encode mappings to systems for which a dedicated field exists","title":"Other properties"},{"location":"Uri/","text":"Type: Uri a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Uri"},{"location":"Uri/#type-uri","text":"a complete URI URI: xsd:anyURI base : URI uri : xsd:anyURI repr : str","title":"Type: Uri"},{"location":"Uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uri/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"Uriorcurie/","text":"Type: Uriorcurie a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/types","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: xsd:anyURI base : URIorCURIE uri : xsd:anyURI repr : str","title":"Type: Uriorcurie"},{"location":"Uriorcurie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Uriorcurie/#schema-source","text":"from schema: https://w3id.org/linkml/types","title":"Schema Source"},{"location":"abstract/","text":"Slot: abstract Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots URI: linkml:abstract Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract domain_of: - definition range: boolean","title":"Slot: abstract"},{"location":"abstract/#slot-abstract","text":"Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots URI: linkml:abstract","title":"Slot: abstract"},{"location":"abstract/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"abstract/#properties","text":"Range: Boolean","title":"Properties"},{"location":"abstract/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"abstract/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"abstract/#linkml-source","text":"name: abstract description: Indicates the class or slot cannot be directly instantiated and is intended for grouping and specifying core inherited metaslots in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition alias: abstract domain_of: - definition range: boolean","title":"LinkML Source"},{"location":"alias/","text":"Slot: alias the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. URI: skos:prefLabel Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: alias description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 6 domain: slot_definition slot_uri: skos:prefLabel alias: alias domain_of: - slot_definition range: string","title":"Slot: alias"},{"location":"alias/#slot-alias","text":"the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. URI: skos:prefLabel","title":"Slot: alias"},{"location":"alias/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"alias/#properties","text":"Range: String","title":"Properties"},{"location":"alias/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"alias/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"alias/#linkml-source","text":"name: alias description: the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 6 domain: slot_definition slot_uri: skos:prefLabel alias: alias domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"alias_predicate/","text":"Slot: alias_predicate _The relationship between an element and its alias _ URI: rdf:predicate Applicable Classes Name Description StructuredAlias object that contains meta data about a synonym or alias including where it ca... Properties Range: AliasPredicateEnum Recommended: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: alias_predicate description: 'The relationship between an element and its alias ' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: structured_alias slot_uri: rdf:predicate alias: predicate domain_of: - structured_alias range: alias_predicate_enum recommended: true","title":"Slot: alias_predicate"},{"location":"alias_predicate/#slot-alias_predicate","text":"_The relationship between an element and its alias _ URI: rdf:predicate","title":"Slot: alias_predicate"},{"location":"alias_predicate/#applicable-classes","text":"Name Description StructuredAlias object that contains meta data about a synonym or alias including where it ca...","title":"Applicable Classes"},{"location":"alias_predicate/#properties","text":"Range: AliasPredicateEnum Recommended: True","title":"Properties"},{"location":"alias_predicate/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"alias_predicate/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"alias_predicate/#linkml-source","text":"name: alias_predicate description: 'The relationship between an element and its alias ' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: structured_alias slot_uri: rdf:predicate alias: predicate domain_of: - structured_alias range: alias_predicate_enum recommended: true","title":"LinkML Source"},{"location":"alias_predicate_enum/","text":"Enum: alias_predicate_enum URI: linkml:alias_predicate_enum Other properties Permissible Values Text Description Meaning Other Information EXACT_SYNONYM skos:exactMatch RELATED_SYNONYM skos:relatedMatch BROAD_SYNONYM skos:broaderMatch NARROW_SYNONYM skos:narrowerMatch","title":"Enum: alias_predicate_enum"},{"location":"alias_predicate_enum/#enum-alias_predicate_enum","text":"URI: linkml:alias_predicate_enum","title":"Enum: alias_predicate_enum"},{"location":"alias_predicate_enum/#other-properties","text":"","title":"Other properties"},{"location":"alias_predicate_enum/#permissible-values","text":"Text Description Meaning Other Information EXACT_SYNONYM skos:exactMatch RELATED_SYNONYM skos:relatedMatch BROAD_SYNONYM skos:broaderMatch NARROW_SYNONYM skos:narrowerMatch","title":"Permissible Values"},{"location":"aliases/","text":"Slot: aliases Alaternate names for the element URI: skos:altLabel Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. 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URI: linkml:class_definition_union_of","title":"Slot: union_of"},{"location":"class_definition_union_of/#domain-and-range","text":"ClassDefinition \u2192 0..* ClassDefinition","title":"Domain and Range"},{"location":"class_definition_union_of/#parents","text":"is_a: union_of","title":"Parents"},{"location":"class_definition_union_of/#children","text":"","title":"Children"},{"location":"class_definition_union_of/#used-by","text":"ClassDefinition","title":"Used by"},{"location":"class_definition_union_of/#other-properties","text":"In Subsets: SpecificationSubset OwlProfile","title":"Other properties"},{"location":"class_expression_all_of/","text":"Slot: all_of holds if all of the expressions hold URI: linkml:class_expression_all_of Domain and Range ClassExpression \u2192 0..* AnonymousClassExpression Parents is_a: all_of Children Used by AnonymousClassExpression ClassDefinition ClassExpression Other properties In Subsets: SpecificationSubset Exact Mappings: sh:and","title":"Slot: 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Used by AnonymousClassExpression ClassDefinition ClassExpression Other properties In Subsets: SpecificationSubset Exact Mappings: sh:or","title":"Slot: any_of"},{"location":"class_expression_any_of/#slot-any_of","text":"holds if at least one of the expressions hold URI: linkml:class_expression_any_of","title":"Slot: any_of"},{"location":"class_expression_any_of/#domain-and-range","text":"ClassExpression \u2192 0..* AnonymousClassExpression","title":"Domain and Range"},{"location":"class_expression_any_of/#parents","text":"is_a: any_of","title":"Parents"},{"location":"class_expression_any_of/#children","text":"","title":"Children"},{"location":"class_expression_any_of/#used-by","text":"AnonymousClassExpression ClassDefinition ClassExpression","title":"Used by"},{"location":"class_expression_any_of/#other-properties","text":"In Subsets: SpecificationSubset Exact Mappings: sh:or","title":"Other properties"},{"location":"class_expression_exactly_one_of/","text":"Slot: exactly_one_of holds if only one of the expressions hold URI: linkml:class_expression_exactly_one_of Domain and Range ClassExpression \u2192 0..* AnonymousClassExpression Parents is_a: exactly_one_of Children Used by AnonymousClassExpression ClassDefinition ClassExpression Other properties In Subsets: SpecificationSubset Exact Mappings: sh:xone","title":"Slot: exactly_one_of"},{"location":"class_expression_exactly_one_of/#slot-exactly_one_of","text":"holds if only one of the expressions hold URI: linkml:class_expression_exactly_one_of","title":"Slot: exactly_one_of"},{"location":"class_expression_exactly_one_of/#domain-and-range","text":"ClassExpression \u2192 0..* AnonymousClassExpression","title":"Domain and Range"},{"location":"class_expression_exactly_one_of/#parents","text":"is_a: exactly_one_of","title":"Parents"},{"location":"class_expression_exactly_one_of/#children","text":"","title":"Children"},{"location":"class_expression_exactly_one_of/#used-by","text":"AnonymousClassExpression ClassDefinition 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The URI may come from any namespace and may be shared between schemas URI: linkml:class_uri Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Aliases public ID Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: class_uri description: URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: class_definition ifabsent: class_curie alias: class_uri domain_of: - class_definition range: uriorcurie","title":"Slot: class_uri"},{"location":"class_uri/#slot-class_uri","text":"URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas URI: linkml:class_uri","title":"Slot: class_uri"},{"location":"class_uri/#applicable-classes","text":"Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"class_uri/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"class_uri/#aliases","text":"public ID","title":"Aliases"},{"location":"class_uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"class_uri/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"class_uri/#linkml-source","text":"name: class_uri description: URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 2 domain: class_definition ifabsent: class_curie alias: class_uri domain_of: - class_definition range: uriorcurie","title":"LinkML Source"},{"location":"classes/","text":"Slot: classes An index to the collection of all class definitions in the schema URI: linkml:classes Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: ClassDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: classes description: An index to the collection of all class definitions in the schema in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 3 domain: schema_definition multivalued: true alias: classes domain_of: - schema_definition range: class_definition inlined: true","title":"Slot: classes"},{"location":"classes/#slot-classes","text":"An index to the collection of all class definitions in the schema URI: linkml:classes","title":"Slot: classes"},{"location":"classes/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"classes/#properties","text":"Range: ClassDefinition Multivalued: True","title":"Properties"},{"location":"classes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"classes/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"classes/#linkml-source","text":"name: classes description: An index to the collection of all class definitions in the schema in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 3 domain: schema_definition multivalued: true alias: classes domain_of: - schema_definition range: class_definition inlined: true","title":"LinkML Source"},{"location":"classification_rules/","text":"Slot: classification_rules the collection of classification rules that apply to all members of this class URI: linkml:classification_rules Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: AnonymousClassExpression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules domain_of: - class_definition range: anonymous_class_expression inlined: true","title":"Slot: classification_rules"},{"location":"classification_rules/#slot-classification_rules","text":"the collection of classification rules that apply to all members of this class URI: linkml:classification_rules","title":"Slot: classification_rules"},{"location":"classification_rules/#applicable-classes","text":"Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"classification_rules/#properties","text":"Range: AnonymousClassExpression Multivalued: True","title":"Properties"},{"location":"classification_rules/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"classification_rules/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"classification_rules/#linkml-source","text":"name: classification_rules description: the collection of classification rules that apply to all members of this class in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition multivalued: true alias: classification_rules domain_of: - class_definition range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"close_mappings/","text":"Slot: close_mappings A list of terms from different schemas or terminology systems that have close meaning. URI: skos:closeMatch Inheritance mappings close_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/mappings LinkML Source name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings domain_of: - common_metadata range: uriorcurie","title":"Slot: close_mappings"},{"location":"close_mappings/#slot-close_mappings","text":"A list of terms from different schemas or terminology systems that have close meaning. URI: skos:closeMatch","title":"Slot: close_mappings"},{"location":"close_mappings/#inheritance","text":"mappings close_mappings","title":"Inheritance"},{"location":"close_mappings/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"close_mappings/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"close_mappings/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"close_mappings/#schema-source","text":"from schema: https://w3id.org/linkml/mappings","title":"Schema Source"},{"location":"close_mappings/#linkml-source","text":"name: close mappings description: A list of terms from different schemas or terminology systems that have close meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:closeMatch multivalued: true inherited: false alias: close_mappings domain_of: - common_metadata range: uriorcurie","title":"LinkML Source"},{"location":"code_set/","text":"Slot: code_set the identifier of an enumeration code set. URI: linkml:code_set Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: Uriorcurie TODOs this should be able to connect to an existing code set from TCCM Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set domain_of: - enum_expression range: uriorcurie","title":"Slot: code_set"},{"location":"code_set/#slot-code_set","text":"the identifier of an enumeration code set. URI: linkml:code_set","title":"Slot: code_set"},{"location":"code_set/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"code_set/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"code_set/#todos","text":"this should be able to connect to an existing code set from TCCM","title":"TODOs"},{"location":"code_set/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"code_set/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"code_set/#linkml-source","text":"name: code_set description: the identifier of an enumeration code set. todos: - this should be able to connect to an existing code set from TCCM in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set domain_of: - enum_expression range: uriorcurie","title":"LinkML Source"},{"location":"code_set_tag/","text":"Slot: code_set_tag the version tag of the enumeration code set URI: linkml:code_set_tag Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: String Comments enum_expression cannot have both a code_set_tag and a code_set_version Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag domain_of: - enum_expression range: string","title":"Slot: code_set_tag"},{"location":"code_set_tag/#slot-code_set_tag","text":"the version tag of the enumeration code set URI: linkml:code_set_tag","title":"Slot: code_set_tag"},{"location":"code_set_tag/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"code_set_tag/#properties","text":"Range: String","title":"Properties"},{"location":"code_set_tag/#comments","text":"enum_expression cannot have both a code_set_tag and a code_set_version","title":"Comments"},{"location":"code_set_tag/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"code_set_tag/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"code_set_tag/#linkml-source","text":"name: code_set_tag description: the version tag of the enumeration code set comments: - enum_expression cannot have both a code_set_tag and a code_set_version in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_tag domain_of: - enum_expression range: string","title":"LinkML Source"},{"location":"code_set_version/","text":"Slot: code_set_version the version identifier of the enumeration code set URI: linkml:code_set_version Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: String Comments we assume that version identifiers lexically sort in temporal order. Recommend semver when possible Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version domain_of: - enum_expression range: string","title":"Slot: code_set_version"},{"location":"code_set_version/#slot-code_set_version","text":"the version identifier of the enumeration code set URI: linkml:code_set_version","title":"Slot: code_set_version"},{"location":"code_set_version/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"code_set_version/#properties","text":"Range: String","title":"Properties"},{"location":"code_set_version/#comments","text":"we assume that version identifiers lexically sort in temporal order. Recommend semver when possible","title":"Comments"},{"location":"code_set_version/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"code_set_version/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"code_set_version/#linkml-source","text":"name: code_set_version description: the version identifier of the enumeration code set comments: - we assume that version identifiers lexically sort in temporal order. Recommend semver when possible in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: code_set_version domain_of: - enum_expression range: string","title":"LinkML Source"},{"location":"comments/","text":"Slot: comments notes and comments about an element intended for external consumption URI: skos:note Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments domain_of: - common_metadata range: string","title":"Slot: comments"},{"location":"comments/#slot-comments","text":"notes and comments about an element intended for external consumption URI: skos:note","title":"Slot: comments"},{"location":"comments/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"comments/#properties","text":"Range: String Multivalued: True","title":"Properties"},{"location":"comments/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"comments/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"comments/#linkml-source","text":"name: comments description: notes and comments about an element intended for external consumption in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - rdfs:comment rank: 1000 domain: element slot_uri: skos:note multivalued: true alias: comments domain_of: - common_metadata range: string","title":"LinkML Source"},{"location":"concepts/","text":"Slot: concepts A list of identifiers that are used to construct a set of permissible values URI: linkml:concepts Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts domain_of: - enum_expression range: uriorcurie","title":"Slot: concepts"},{"location":"concepts/#slot-concepts","text":"A list of identifiers that are used to construct a set of permissible values URI: linkml:concepts","title":"Slot: concepts"},{"location":"concepts/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"concepts/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"concepts/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"concepts/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"concepts/#linkml-source","text":"name: concepts description: A list of identifiers that are used to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: concepts domain_of: - enum_expression range: uriorcurie","title":"LinkML Source"},{"location":"conforms_to/","text":"Slot: conforms_to An established standard to which the element conforms. URI: dcterms:conformsTo Applicable Classes Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to domain_of: - element range: string","title":"Slot: conforms_to"},{"location":"conforms_to/#slot-conforms_to","text":"An established standard to which the element conforms. URI: dcterms:conformsTo","title":"Slot: conforms_to"},{"location":"conforms_to/#applicable-classes","text":"Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"conforms_to/#properties","text":"Range: String","title":"Properties"},{"location":"conforms_to/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conforms_to/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"conforms_to/#linkml-source","text":"name: conforms_to description: An established standard to which the element conforms. in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:conformsTo alias: conforms_to domain_of: - element range: string","title":"LinkML Source"},{"location":"created_by/","text":"Slot: created_by agent that created the element URI: pav:createdBy Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by domain_of: - definition range: uriorcurie","title":"Slot: created_by"},{"location":"created_by/#slot-created_by","text":"agent that created the element URI: pav:createdBy","title":"Slot: created_by"},{"location":"created_by/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"created_by/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"created_by/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"created_by/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"created_by/#linkml-source","text":"name: created_by description: agent that created the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdBy alias: created_by domain_of: - definition range: uriorcurie","title":"LinkML Source"},{"location":"created_on/","text":"Slot: created_on time at which the element was created URI: pav:createdOn Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Datetime Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on domain_of: - definition range: datetime","title":"Slot: created_on"},{"location":"created_on/#slot-created_on","text":"time at which the element was created URI: pav:createdOn","title":"Slot: created_on"},{"location":"created_on/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"created_on/#properties","text":"Range: Datetime","title":"Properties"},{"location":"created_on/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"created_on/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"created_on/#linkml-source","text":"name: created_on description: time at which the element was created in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:createdOn alias: created_on domain_of: - definition range: datetime","title":"LinkML Source"},{"location":"credits/","text":"Credits this project was made using the Link Model Language (LinkML) framework","title":"Credits"},{"location":"credits/#credits","text":"this project was made using the Link Model Language (LinkML) framework","title":"Credits"},{"location":"deactivated/","text":"Slot: deactivated a deactivated rule is not executed by the rules engine URI: sh:deactivated Applicable Classes Name Description ClassRule A rule that applies to instances of a class Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated domain_of: - class_rule range: boolean","title":"Slot: deactivated"},{"location":"deactivated/#slot-deactivated","text":"a deactivated rule is not executed by the rules engine URI: sh:deactivated","title":"Slot: deactivated"},{"location":"deactivated/#applicable-classes","text":"Name Description ClassRule A rule that applies to instances of a class","title":"Applicable Classes"},{"location":"deactivated/#properties","text":"Range: Boolean","title":"Properties"},{"location":"deactivated/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"deactivated/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"deactivated/#linkml-source","text":"name: deactivated description: a deactivated rule is not executed by the rules engine from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: sh:deactivated alias: deactivated domain_of: - class_rule range: boolean","title":"LinkML Source"},{"location":"default_curi_maps/","text":"Slot: default_curi_maps ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables URI: linkml:default_curi_maps Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: default_curi_maps description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: default_curi_maps domain_of: - schema_definition range: string","title":"Slot: default_curi_maps"},{"location":"default_curi_maps/#slot-default_curi_maps","text":"ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables URI: linkml:default_curi_maps","title":"Slot: default_curi_maps"},{"location":"default_curi_maps/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"default_curi_maps/#properties","text":"Range: String Multivalued: True","title":"Properties"},{"location":"default_curi_maps/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"default_curi_maps/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"default_curi_maps/#linkml-source","text":"name: default_curi_maps description: ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: default_curi_maps domain_of: - schema_definition range: string","title":"LinkML Source"},{"location":"default_prefix/","text":"Slot: default_prefix default and base prefix -- used for ':' identifiers, @base and @vocab URI: linkml:default_prefix Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 11 domain: schema_definition ifabsent: default_ns alias: default_prefix domain_of: - schema_definition range: string","title":"Slot: default_prefix"},{"location":"default_prefix/#slot-default_prefix","text":"default and base prefix -- used for ':' identifiers, @base and @vocab URI: linkml:default_prefix","title":"Slot: default_prefix"},{"location":"default_prefix/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"default_prefix/#properties","text":"Range: String","title":"Properties"},{"location":"default_prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"default_prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"default_prefix/#linkml-source","text":"name: default_prefix description: default and base prefix -- used for ':' identifiers, @base and @vocab in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 11 domain: schema_definition ifabsent: default_ns alias: default_prefix domain_of: - schema_definition range: string","title":"LinkML Source"},{"location":"default_range/","text":"Slot: default_range default slot range to be used if range element is omitted from a slot definition URI: linkml:default_range Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: TypeDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: default_range description: default slot range to be used if range element is omitted from a slot definition notes: - restricted to type definitions for the time being. Could be broadened if required in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 13 domain: schema_definition alias: default_range domain_of: - schema_definition range: type_definition","title":"Slot: default_range"},{"location":"default_range/#slot-default_range","text":"default slot range to be used if range element is omitted from a slot definition URI: linkml:default_range","title":"Slot: default_range"},{"location":"default_range/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"default_range/#properties","text":"Range: TypeDefinition","title":"Properties"},{"location":"default_range/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"default_range/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"default_range/#linkml-source","text":"name: default_range description: default slot range to be used if range element is omitted from a slot definition notes: - restricted to type definitions for the time being. Could be broadened if required in_subset: - SpecificationSubset - MinimalSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 13 domain: schema_definition alias: default_range domain_of: - schema_definition range: type_definition","title":"LinkML Source"},{"location":"defining_slots/","text":"Slot: defining_slots The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom URI: linkml:defining_slots Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... 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SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: derivation description: Expression for deriving this unit from other units from_schema: https://w3id.org/linkml/units rank: 1000 alias: derivation domain_of: - UnitOfMeasure range: string","title":"Slot: derivation"},{"location":"derivation/#slot-derivation","text":"Expression for deriving this unit from other units URI: linkml:derivation","title":"Slot: derivation"},{"location":"derivation/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"derivation/#properties","text":"Range: String","title":"Properties"},{"location":"derivation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"derivation/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"derivation/#linkml-source","text":"name: derivation description: Expression for deriving this unit from other units from_schema: https://w3id.org/linkml/units rank: 1000 alias: derivation domain_of: - UnitOfMeasure range: string","title":"LinkML Source"},{"location":"description/","text":"Slot: description a description of the element's purpose and use URI: skos:definition Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Recommended: True Aliases definition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: description description: a description of the element's purpose and use in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - definition exact_mappings: - dcterms:description - schema:description rank: 5 domain: element slot_uri: skos:definition alias: description domain_of: - common_metadata - permissible_value range: string recommended: true","title":"Slot: description"},{"location":"description/#slot-description","text":"a description of the element's purpose and use URI: skos:definition","title":"Slot: description"},{"location":"description/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... 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Properties Range: Definition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with domain_of: - slot_definition - class_definition range: definition","title":"Slot: disjoint_with"},{"location":"disjoint_with/#slot-disjoint_with","text":"Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances URI: linkml:disjoint_with","title":"Slot: disjoint_with"},{"location":"disjoint_with/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"disjoint_with/#properties","text":"Range: Definition Multivalued: True","title":"Properties"},{"location":"disjoint_with/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"disjoint_with/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"disjoint_with/#linkml-source","text":"name: disjoint_with description: Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: disjoint_with domain_of: - slot_definition - class_definition range: definition","title":"LinkML Source"},{"location":"domain/","text":"Slot: domain _defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 _ URI: linkml:domain Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: ClassDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: domain description: \"defines the type of the subject of the slot. Given the following slot\\ \\ definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n X:\\n \\ \\ S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain domain_of: - slot_definition range: class_definition","title":"Slot: domain"},{"location":"domain/#slot-domain","text":"_defines the type of the subject of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts that X is an instance of C1 _ URI: linkml:domain","title":"Slot: domain"},{"location":"domain/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"domain/#properties","text":"Range: ClassDefinition","title":"Properties"},{"location":"domain/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"domain/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"domain/#linkml-source","text":"name: domain description: \"defines the type of the subject of the slot. Given the following slot\\ \\ definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n X:\\n \\ \\ S1: Y\\n\\nimplicitly asserts that X is an instance of C1\\n\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: domain domain_of: - slot_definition range: class_definition","title":"LinkML Source"},{"location":"domain_of/","text":"Slot: domain_of the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context URI: linkml:domain_of Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: ClassDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of domain_of: - slot_definition range: class_definition","title":"Slot: domain_of"},{"location":"domain_of/#slot-domain_of","text":"the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context URI: linkml:domain_of","title":"Slot: domain_of"},{"location":"domain_of/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"domain_of/#properties","text":"Range: ClassDefinition Multivalued: True","title":"Properties"},{"location":"domain_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"domain_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"domain_of/#linkml-source","text":"name: domain_of description: the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition multivalued: true readonly: filled in by the loader alias: domain_of domain_of: - slot_definition range: class_definition","title":"LinkML Source"},{"location":"elseconditions/","text":"Slot: elseconditions an expression that must hold for an instance of the class, if the preconditions no not hold URI: linkml:elseconditions Applicable Classes Name Description ClassRule A rule that applies to instances of a class Properties Range: AnonymousClassExpression Aliases else Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"Slot: elseconditions"},{"location":"elseconditions/#slot-elseconditions","text":"an expression that must hold for an instance of the class, if the preconditions no not hold URI: linkml:elseconditions","title":"Slot: elseconditions"},{"location":"elseconditions/#applicable-classes","text":"Name Description ClassRule A rule that applies to instances of a class","title":"Applicable Classes"},{"location":"elseconditions/#properties","text":"Range: AnonymousClassExpression","title":"Properties"},{"location":"elseconditions/#aliases","text":"else","title":"Aliases"},{"location":"elseconditions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"elseconditions/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"elseconditions/#linkml-source","text":"name: elseconditions description: an expression that must hold for an instance of the class, if the preconditions no not hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - else rank: 115 alias: elseconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"emit_prefixes/","text":"Slot: emit_prefixes a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. URI: linkml:emit_prefixes Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Ncname Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes domain_of: - schema_definition range: ncname","title":"Slot: emit_prefixes"},{"location":"emit_prefixes/#slot-emit_prefixes","text":"a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. URI: linkml:emit_prefixes","title":"Slot: emit_prefixes"},{"location":"emit_prefixes/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"emit_prefixes/#properties","text":"Range: Ncname Multivalued: True","title":"Properties"},{"location":"emit_prefixes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"emit_prefixes/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"emit_prefixes/#linkml-source","text":"name: emit_prefixes description: a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models. from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: emit_prefixes domain_of: - schema_definition range: ncname","title":"LinkML Source"},{"location":"enum_range/","text":"Slot: enum_range An inlined enumeration URI: linkml:enum_range Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: EnumExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range domain_of: - slot_expression range: enum_expression","title":"Slot: enum_range"},{"location":"enum_range/#slot-enum_range","text":"An inlined enumeration URI: linkml:enum_range","title":"Slot: enum_range"},{"location":"enum_range/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"enum_range/#properties","text":"Range: EnumExpression","title":"Properties"},{"location":"enum_range/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"enum_range/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"enum_range/#linkml-source","text":"name: enum_range description: An inlined enumeration in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 alias: enum_range domain_of: - slot_expression range: enum_expression","title":"LinkML Source"},{"location":"enum_uri/","text":"Slot: enum_uri URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas URI: linkml:enum_uri Applicable Classes Name Description EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: Uriorcurie Aliases public ID Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri domain_of: - enum_definition range: uriorcurie","title":"Slot: enum_uri"},{"location":"enum_uri/#slot-enum_uri","text":"URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas URI: linkml:enum_uri","title":"Slot: enum_uri"},{"location":"enum_uri/#applicable-classes","text":"Name Description EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"enum_uri/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"enum_uri/#aliases","text":"public ID","title":"Aliases"},{"location":"enum_uri/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"enum_uri/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"enum_uri/#linkml-source","text":"name: enum_uri description: URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - public ID rank: 1000 domain: enum_definition ifabsent: class_curie alias: enum_uri domain_of: - enum_definition range: uriorcurie","title":"LinkML Source"},{"location":"enums/","text":"Slot: enums An index to the collection of all enum definitions in the schema URI: linkml:enums Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: EnumDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums domain_of: - schema_definition range: enum_definition inlined: true","title":"Slot: enums"},{"location":"enums/#slot-enums","text":"An index to the collection of all enum definitions in the schema URI: linkml:enums","title":"Slot: enums"},{"location":"enums/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"enums/#properties","text":"Range: EnumDefinition Multivalued: True","title":"Properties"},{"location":"enums/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"enums/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"enums/#linkml-source","text":"name: enums description: An index to the collection of all enum definitions in the schema in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 5 domain: schema_definition multivalued: true alias: enums domain_of: - schema_definition range: enum_definition inlined: true","title":"LinkML Source"},{"location":"equals_expression/","text":"Slot: equals_expression the value of the slot must equal the value of the evaluated expression URI: linkml:equals_expression Inheritance list_value_specification_constant equals_expression Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Comments for example, a 'length' slot may have an equals_expression with value '(end-start)+1' TODOs specify expression language See Also https://github.com/linkml/linkml/issues/75 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression domain_of: - slot_expression range: string","title":"Slot: equals_expression"},{"location":"equals_expression/#slot-equals_expression","text":"the value of the slot must equal the value of the evaluated expression URI: linkml:equals_expression","title":"Slot: equals_expression"},{"location":"equals_expression/#inheritance","text":"list_value_specification_constant equals_expression","title":"Inheritance"},{"location":"equals_expression/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_expression/#properties","text":"Range: String","title":"Properties"},{"location":"equals_expression/#comments","text":"for example, a 'length' slot may have an equals_expression with value '(end-start)+1'","title":"Comments"},{"location":"equals_expression/#todos","text":"specify expression language","title":"TODOs"},{"location":"equals_expression/#see-also","text":"https://github.com/linkml/linkml/issues/75","title":"See Also"},{"location":"equals_expression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_expression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_expression/#linkml-source","text":"name: equals_expression description: the value of the slot must equal the value of the evaluated expression todos: - specify expression language comments: - for example, a 'length' slot may have an equals_expression with value '(end-start)+1' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/75 rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_expression domain_of: - slot_expression range: string","title":"LinkML Source"},{"location":"equals_number/","text":"Slot: equals_number the slot must have range of a number and the value of the slot must equal the specified value URI: linkml:equals_number Inheritance list_value_specification_constant equals_number Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number domain_of: - type_expression - slot_expression range: integer","title":"Slot: equals_number"},{"location":"equals_number/#slot-equals_number","text":"the slot must have range of a number and the value of the slot must equal the specified value URI: linkml:equals_number","title":"Slot: equals_number"},{"location":"equals_number/#inheritance","text":"list_value_specification_constant equals_number","title":"Inheritance"},{"location":"equals_number/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_number/#properties","text":"Range: Integer","title":"Properties"},{"location":"equals_number/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_number/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_number/#linkml-source","text":"name: equals_number description: the slot must have range of a number and the value of the slot must equal the specified value from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable inherited: true alias: equals_number domain_of: - type_expression - slot_expression range: integer","title":"LinkML Source"},{"location":"equals_number_in/","text":"Slot: equals_number_in the slot must have range number and the value of the slot must equal one of the specified values URI: linkml:equals_number_in Inheritance list_value_specification_constant equals_number_in Properties Range: Integer Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_number_in description: the slot must have range number and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_number_in range: integer","title":"Slot: equals_number_in"},{"location":"equals_number_in/#slot-equals_number_in","text":"the slot must have range number and the value of the slot must equal one of the specified values URI: linkml:equals_number_in","title":"Slot: equals_number_in"},{"location":"equals_number_in/#inheritance","text":"list_value_specification_constant equals_number_in","title":"Inheritance"},{"location":"equals_number_in/#properties","text":"Range: Integer Multivalued: True","title":"Properties"},{"location":"equals_number_in/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_number_in/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_number_in/#linkml-source","text":"name: equals_number_in description: the slot must have range number and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_number_in range: integer","title":"LinkML Source"},{"location":"equals_string/","text":"Slot: equals_string the slot must have range string and the value of the slot must equal the specified value URI: linkml:equals_string Inheritance list_value_specification_constant equals_string Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string domain_of: - type_expression - slot_expression range: string","title":"Slot: equals_string"},{"location":"equals_string/#slot-equals_string","text":"the slot must have range string and the value of the slot must equal the specified value URI: linkml:equals_string","title":"Slot: equals_string"},{"location":"equals_string/#inheritance","text":"list_value_specification_constant equals_string","title":"Inheritance"},{"location":"equals_string/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_string/#properties","text":"Range: String","title":"Properties"},{"location":"equals_string/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_string/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_string/#linkml-source","text":"name: equals_string description: the slot must have range string and the value of the slot must equal the specified value in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant inherited: true alias: equals_string domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"equals_string_in/","text":"Slot: equals_string_in the slot must have range string and the value of the slot must equal one of the specified values URI: linkml:equals_string_in Inheritance list_value_specification_constant equals_string_in Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in domain_of: - type_expression - slot_expression range: string","title":"Slot: equals_string_in"},{"location":"equals_string_in/#slot-equals_string_in","text":"the slot must have range string and the value of the slot must equal one of the specified values URI: linkml:equals_string_in","title":"Slot: equals_string_in"},{"location":"equals_string_in/#inheritance","text":"list_value_specification_constant equals_string_in","title":"Inheritance"},{"location":"equals_string_in/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"equals_string_in/#properties","text":"Range: String Multivalued: True","title":"Properties"},{"location":"equals_string_in/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"equals_string_in/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"equals_string_in/#linkml-source","text":"name: equals_string_in description: the slot must have range string and the value of the slot must equal one of the specified values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing multivalued: true inherited: true alias: equals_string_in domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"exact_mappings/","text":"Slot: exact_mappings A list of terms from different schemas or terminology systems that have identical meaning. URI: skos:exactMatch Inheritance mappings exact_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/mappings LinkML Source name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings domain_of: - common_metadata - UnitOfMeasure range: uriorcurie","title":"Slot: exact_mappings"},{"location":"exact_mappings/#slot-exact_mappings","text":"A list of terms from different schemas or terminology systems that have identical meaning. URI: skos:exactMatch","title":"Slot: exact_mappings"},{"location":"exact_mappings/#inheritance","text":"mappings exact_mappings","title":"Inheritance"},{"location":"exact_mappings/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"exact_mappings/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"exact_mappings/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"exact_mappings/#schema-source","text":"from schema: https://w3id.org/linkml/mappings","title":"Schema Source"},{"location":"exact_mappings/#linkml-source","text":"name: exact mappings description: A list of terms from different schemas or terminology systems that have identical meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:exactMatch multivalued: true inherited: false alias: exact_mappings domain_of: - common_metadata - UnitOfMeasure range: uriorcurie","title":"LinkML Source"},{"location":"exactly_one_of/","text":"Slot: exactly_one_of holds if only one of the expressions hold URI: linkml:exactly_one_of Inheritance boolean_slot exactly_one_of Applicable Classes Name Description TypeExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Expression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression range: expression","title":"Slot: exactly_one_of"},{"location":"exactly_one_of/#slot-exactly_one_of","text":"holds if only one of the expressions hold URI: linkml:exactly_one_of","title":"Slot: exactly_one_of"},{"location":"exactly_one_of/#inheritance","text":"boolean_slot exactly_one_of","title":"Inheritance"},{"location":"exactly_one_of/#applicable-classes","text":"Name Description TypeExpression PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"exactly_one_of/#properties","text":"Range: Expression Multivalued: True","title":"Properties"},{"location":"exactly_one_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"exactly_one_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"exactly_one_of/#linkml-source","text":"name: exactly_one_of description: holds if only one of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:xone rank: 103 is_a: boolean_slot multivalued: true alias: exactly_one_of domain_of: - type_expression - path_expression - slot_expression - class_expression range: expression","title":"LinkML Source"},{"location":"examples/","text":"Slot: examples example usages of an element URI: linkml:examples Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Example Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples domain_of: - common_metadata range: example inlined: true","title":"Slot: examples"},{"location":"examples/#slot-examples","text":"example usages of an element URI: linkml:examples","title":"Slot: examples"},{"location":"examples/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"examples/#properties","text":"Range: Example Multivalued: True","title":"Properties"},{"location":"examples/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"examples/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"examples/#linkml-source","text":"name: examples description: example usages of an element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - vann:example rank: 1000 singular_name: example domain: element multivalued: true alias: examples domain_of: - common_metadata range: example inlined: true","title":"LinkML Source"},{"location":"extension_tag/","text":"Slot: extension_tag a tag associated with an extension URI: linkml:extension_tag Applicable Classes Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation Properties Range: Uriorcurie Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions LinkML Source name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag domain_of: - extension range: uriorcurie required: true","title":"Slot: extension_tag"},{"location":"extension_tag/#slot-extension_tag","text":"a tag associated with an extension URI: linkml:extension_tag","title":"Slot: extension_tag"},{"location":"extension_tag/#applicable-classes","text":"Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation","title":"Applicable Classes"},{"location":"extension_tag/#properties","text":"Range: Uriorcurie Required: True","title":"Properties"},{"location":"extension_tag/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"extension_tag/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"extension_tag/#linkml-source","text":"name: extension_tag description: a tag associated with an extension from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension key: true alias: tag domain_of: - extension range: uriorcurie required: true","title":"LinkML Source"},{"location":"extension_value/","text":"Slot: extension_value the actual annotation URI: linkml:extension_value Applicable Classes Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions LinkML Source name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value domain_of: - extension range: string required: true","title":"Slot: extension_value"},{"location":"extension_value/#slot-extension_value","text":"the actual annotation URI: linkml:extension_value","title":"Slot: extension_value"},{"location":"extension_value/#applicable-classes","text":"Name Description Extension a tag/value pair used to add non-model information to an entry Annotation a tag/value pair with the semantics of OWL Annotation","title":"Applicable Classes"},{"location":"extension_value/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"extension_value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"extension_value/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"extension_value/#linkml-source","text":"name: extension_value description: the actual annotation from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extension alias: value domain_of: - extension range: string required: true","title":"LinkML Source"},{"location":"extensions/","text":"Slot: extensions a tag/text tuple attached to an arbitrary element URI: linkml:extensions Inheritance extensions annotations Applicable Classes Name Description Extension a tag/value pair used to add non-model information to an entry Extensible mixin for classes that support extension Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Annotation a tag/value pair with the semantics of OWL Annotation Properties Range: Extension Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/extensions LinkML Source name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions domain_of: - extension - extensible range: extension inlined: true","title":"Slot: extensions"},{"location":"extensions/#slot-extensions","text":"a tag/text tuple attached to an arbitrary element URI: linkml:extensions","title":"Slot: extensions"},{"location":"extensions/#inheritance","text":"extensions annotations","title":"Inheritance"},{"location":"extensions/#applicable-classes","text":"Name Description Extension a tag/value pair used to add non-model information to an entry Extensible mixin for classes that support extension Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Annotation a tag/value pair with the semantics of OWL Annotation","title":"Applicable Classes"},{"location":"extensions/#properties","text":"Range: Extension Multivalued: True","title":"Properties"},{"location":"extensions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"extensions/#schema-source","text":"from schema: https://w3id.org/linkml/extensions","title":"Schema Source"},{"location":"extensions/#linkml-source","text":"name: extensions description: a tag/text tuple attached to an arbitrary element from_schema: https://w3id.org/linkml/extensions rank: 1000 domain: extensible multivalued: true alias: extensions domain_of: - extension - extensible range: extension inlined: true","title":"LinkML Source"},{"location":"followed_by/","text":"Slot: followed_by in a sequential list, this indicates the next member URI: linkml:followed_by Applicable Classes Name Description PathExpression An expression that describes an abstract path from an object to another throu... Properties Range: Expression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by domain_of: - path_expression range: expression","title":"Slot: followed_by"},{"location":"followed_by/#slot-followed_by","text":"in a sequential list, this indicates the next member URI: linkml:followed_by","title":"Slot: followed_by"},{"location":"followed_by/#applicable-classes","text":"Name Description PathExpression An expression that describes an abstract path from an object to another throu...","title":"Applicable Classes"},{"location":"followed_by/#properties","text":"Range: Expression","title":"Properties"},{"location":"followed_by/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"followed_by/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"followed_by/#linkml-source","text":"name: followed_by description: in a sequential list, this indicates the next member from_schema: https://w3id.org/linkml/meta rank: 1000 alias: followed_by domain_of: - path_expression range: expression","title":"LinkML Source"},{"location":"from_schema/","text":"Slot: from_schema id of the schema that defined the element URI: skos:inScheme Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uri Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema domain_of: - common_metadata range: uri","title":"Slot: from_schema"},{"location":"from_schema/#slot-from_schema","text":"id of the schema that defined the element URI: skos:inScheme","title":"Slot: from_schema"},{"location":"from_schema/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"from_schema/#properties","text":"Range: Uri","title":"Properties"},{"location":"from_schema/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"from_schema/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"from_schema/#linkml-source","text":"name: from_schema description: id of the schema that defined the element notes: - A stronger model would be range schema_definition, but this doesn't address the import model in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: skos:inScheme readonly: supplied by the schema loader alias: from_schema domain_of: - common_metadata range: uri","title":"LinkML Source"},{"location":"generation_date/","text":"Slot: generation_date date and time that the schema was loaded/generated URI: linkml:generation_date Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Datetime Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date domain_of: - schema_definition range: datetime","title":"Slot: generation_date"},{"location":"generation_date/#slot-generation_date","text":"date and time that the schema was loaded/generated URI: linkml:generation_date","title":"Slot: generation_date"},{"location":"generation_date/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"generation_date/#properties","text":"Range: Datetime","title":"Properties"},{"location":"generation_date/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"generation_date/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"generation_date/#linkml-source","text":"name: generation_date description: date and time that the schema was loaded/generated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition readonly: supplied by the schema loader alias: generation_date domain_of: - schema_definition range: datetime","title":"LinkML Source"},{"location":"has_member/","text":"Slot: has_member the value of the slot is multivalued with at least one member satisfying the condition URI: linkml:has_member Inheritance list_value_specification_constant has_member Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: AnonymousSlotExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member domain_of: - slot_expression range: anonymous_slot_expression","title":"Slot: has_member"},{"location":"has_member/#slot-has_member","text":"the value of the slot is multivalued with at least one member satisfying the condition URI: linkml:has_member","title":"Slot: has_member"},{"location":"has_member/#inheritance","text":"list_value_specification_constant has_member","title":"Inheritance"},{"location":"has_member/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"has_member/#properties","text":"Range: AnonymousSlotExpression","title":"Properties"},{"location":"has_member/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_member/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"has_member/#linkml-source","text":"name: has_member description: the value of the slot is multivalued with at least one member satisfying the condition in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: testing alias: has_member domain_of: - slot_expression range: anonymous_slot_expression","title":"LinkML Source"},{"location":"has_quantity_kind/","text":"Slot: has_quantity_kind Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length URI: qudt:hasQuantityKind Applicable Classes Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Properties Range: Uriorcurie Comments Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: has_quantity_kind description: Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length comments: - Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:hasQuantityKind alias: has_quantity_kind domain_of: - UnitOfMeasure range: uriorcurie","title":"Slot: has_quantity_kind"},{"location":"has_quantity_kind/#slot-has_quantity_kind","text":"Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length URI: qudt:hasQuantityKind","title":"Slot: has_quantity_kind"},{"location":"has_quantity_kind/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"has_quantity_kind/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"has_quantity_kind/#comments","text":"Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind","title":"Comments"},{"location":"has_quantity_kind/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"has_quantity_kind/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"has_quantity_kind/#linkml-source","text":"name: has_quantity_kind description: Concept in a vocabulary or ontology that denotes the kind of quanity being measured, e.g. length comments: - Potential ontologies include but are not limited to PATO, NCIT, OBOE, qudt.quantityKind from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:hasQuantityKind alias: has_quantity_kind domain_of: - UnitOfMeasure range: uriorcurie","title":"LinkML Source"},{"location":"home/","text":"Introduction Welcome to the LinkML metamodel reference guide. For full documentation see linkml.io/linkml/ .","title":"About"},{"location":"home/#introduction","text":"Welcome to the LinkML metamodel reference guide. For full documentation see linkml.io/linkml/ .","title":"Introduction"},{"location":"id/","text":"Slot: id The official schema URI URI: linkml:id Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Uri Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id domain_of: - schema_definition range: uri required: true","title":"Slot: id"},{"location":"id/#slot-id","text":"The official schema URI URI: linkml:id","title":"Slot: id"},{"location":"id/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"id/#properties","text":"Range: Uri Required: True","title":"Properties"},{"location":"id/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"id/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"id/#linkml-source","text":"name: id description: The official schema URI in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 0 domain: schema_definition alias: id domain_of: - schema_definition range: uri required: true","title":"LinkML Source"},{"location":"id_prefixes/","text":"Slot: id_prefixes the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes Applicable Classes Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Ncname Multivalued: True Comments Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open) See Also https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes domain_of: - element range: ncname","title":"Slot: id_prefixes"},{"location":"id_prefixes/#slot-id_prefixes","text":"the identifier of this class or slot must begin with the URIs referenced by this prefix URI: linkml:id_prefixes","title":"Slot: id_prefixes"},{"location":"id_prefixes/#applicable-classes","text":"Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"id_prefixes/#properties","text":"Range: Ncname Multivalued: True","title":"Properties"},{"location":"id_prefixes/#comments","text":"Order of elements may be used to indicate priority order If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by : ( should start if the list is open) If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix ( should start if the list is open)","title":"Comments"},{"location":"id_prefixes/#see-also","text":"https://github.com/linkml/linkml/issues/194 https://github.com/linkml/linkml-model/issues/28","title":"See Also"},{"location":"id_prefixes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"id_prefixes/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"id_prefixes/#linkml-source","text":"name: id_prefixes description: the identifier of this class or slot must begin with the URIs referenced by this prefix comments: - Order of elements may be used to indicate priority order - If identifiers are treated as CURIEs, then the CURIE must start with one of the indicated prefixes followed by `:` (_should_ start if the list is open) - If identifiers are treated as URIs, then the URI string must start with the expanded for of the prefix (_should_ start if the list is open) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/194 - https://github.com/linkml/linkml-model/issues/28 rank: 1000 domain: element multivalued: true alias: id_prefixes domain_of: - element range: ncname","title":"LinkML Source"},{"location":"identifier/","text":"Slot: identifier True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Aliases primary key ID UID code Comments identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both See Also https://en.wikipedia.org/wiki/Identifier Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier domain_of: - slot_definition range: boolean","title":"Slot: identifier"},{"location":"identifier/#slot-identifier","text":"True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container URI: linkml:identifier","title":"Slot: identifier"},{"location":"identifier/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"identifier/#properties","text":"Range: Boolean","title":"Properties"},{"location":"identifier/#aliases","text":"primary key ID UID code","title":"Aliases"},{"location":"identifier/#comments","text":"identifier is inherited a key slot is automatically required. Identifiers cannot be optional a given domain can have at most one identifier identifiers and keys are mutually exclusive. A given domain cannot have both","title":"Comments"},{"location":"identifier/#see-also","text":"https://en.wikipedia.org/wiki/Identifier","title":"See Also"},{"location":"identifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"identifier/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"identifier/#linkml-source","text":"name: identifier description: True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container comments: - identifier is inherited - a key slot is automatically required. Identifiers cannot be optional - a given domain can have at most one identifier - identifiers and keys are mutually exclusive. A given domain cannot have both in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta see_also: - https://en.wikipedia.org/wiki/Identifier aliases: - primary key - ID - UID - code rank: 5 domain: slot_definition inherited: true alias: identifier domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"identifier_pattern/","text":"Slot: identifier_pattern A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values URI: linkml:identifier_pattern Applicable Classes Name Description MatchQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: identifier_pattern description: A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: match_query alias: identifier_pattern domain_of: - match_query range: string","title":"Slot: identifier_pattern"},{"location":"identifier_pattern/#slot-identifier_pattern","text":"A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values URI: linkml:identifier_pattern","title":"Slot: identifier_pattern"},{"location":"identifier_pattern/#applicable-classes","text":"Name Description MatchQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"identifier_pattern/#properties","text":"Range: String","title":"Properties"},{"location":"identifier_pattern/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"identifier_pattern/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"identifier_pattern/#linkml-source","text":"name: identifier_pattern description: A regular expression that is used to obtain a set of identifiers from a source_ontology to construct a set of permissible values in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: match_query alias: identifier_pattern domain_of: - match_query range: string","title":"LinkML Source"},{"location":"iec61360code/","text":"Slot: iec61360code URI: qudt:iec61360Code Applicable Classes Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: iec61360code from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:iec61360Code alias: iec61360code domain_of: - UnitOfMeasure range: string","title":"Slot: iec61360code"},{"location":"iec61360code/#slot-iec61360code","text":"URI: qudt:iec61360Code","title":"Slot: iec61360code"},{"location":"iec61360code/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"iec61360code/#properties","text":"Range: String","title":"Properties"},{"location":"iec61360code/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"iec61360code/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"iec61360code/#linkml-source","text":"name: iec61360code from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:iec61360Code alias: iec61360code domain_of: - UnitOfMeasure range: string","title":"LinkML Source"},{"location":"ifabsent/","text":"Slot: ifabsent function that provides a default value for the slot. Possible values for this slot are defined in linkml_runtime.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value) -- integer\\ \\ value\\n * str(value) -- string value\\n * default_range -- schema default range\\n\\ \\ * bnode -- blank node identifier\\n * slot_uri -- URI for the slot\\n * class_curie\\ \\ -- CURIE for the containing class\\n * class_uri -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent domain_of: - slot_definition range: string","title":"Slot: ifabsent"},{"location":"ifabsent/#slot-ifabsent","text":"function that provides a default value for the slot. Possible values for this slot are defined in linkml_runtime.utils.ifabsent_functions.default_library: * [Tt]rue -- boolean True * [Ff]alse -- boolean False * int(value) -- integer value * str(value) -- string value * default_range -- schema default range * bnode -- blank node identifier * slot_uri -- URI for the slot * class_curie -- CURIE for the containing class * class_uri -- URI for the containing class URI: linkml:ifabsent","title":"Slot: ifabsent"},{"location":"ifabsent/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"ifabsent/#properties","text":"Range: String","title":"Properties"},{"location":"ifabsent/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ifabsent/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"ifabsent/#linkml-source","text":"name: ifabsent description: \"function that provides a default value for the slot. Possible values\\ \\ for this slot are defined in\\nlinkml_runtime.utils.ifabsent_functions.default_library:\\n\\ \\ * [Tt]rue -- boolean True\\n * [Ff]alse -- boolean False\\n * int(value) -- integer\\ \\ value\\n * str(value) -- string value\\n * default_range -- schema default range\\n\\ \\ * bnode -- blank node identifier\\n * slot_uri -- URI for the slot\\n * class_curie\\ \\ -- CURIE for the containing class\\n * class_uri -- URI for the containing class\" in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:defaultValue rank: 1000 domain: slot_definition inherited: true alias: ifabsent domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"implicit_prefix/","text":"Slot: implicit_prefix Causes the slot value to be interpreted as a uriorcurie after prefixing with this string URI: linkml:implicit_prefix Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix domain_of: - type_expression - slot_expression range: string","title":"Slot: implicit_prefix"},{"location":"implicit_prefix/#slot-implicit_prefix","text":"Causes the slot value to be interpreted as a uriorcurie after prefixing with this string URI: linkml:implicit_prefix","title":"Slot: implicit_prefix"},{"location":"implicit_prefix/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"implicit_prefix/#properties","text":"Range: String","title":"Properties"},{"location":"implicit_prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"implicit_prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"implicit_prefix/#linkml-source","text":"name: implicit_prefix description: Causes the slot value to be interpreted as a uriorcurie after prefixing with this string in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: implicit_prefix domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"import_as/","text":"Slot: import_as URI: linkml:import_as Applicable Classes Name Description ImportExpression an expression describing an import Properties Range: Ncname Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as domain_of: - import_expression range: ncname","title":"Slot: import_as"},{"location":"import_as/#slot-import_as","text":"URI: linkml:import_as","title":"Slot: import_as"},{"location":"import_as/#applicable-classes","text":"Name Description ImportExpression an expression describing an import","title":"Applicable Classes"},{"location":"import_as/#properties","text":"Range: Ncname","title":"Properties"},{"location":"import_as/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"import_as/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"import_as/#linkml-source","text":"name: import_as from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_as domain_of: - import_expression range: ncname","title":"LinkML Source"},{"location":"import_from/","text":"Slot: import_from URI: linkml:import_from Applicable Classes Name Description ImportExpression an expression describing an import Properties Range: Uriorcurie Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from domain_of: - import_expression range: uriorcurie required: true","title":"Slot: import_from"},{"location":"import_from/#slot-import_from","text":"URI: linkml:import_from","title":"Slot: import_from"},{"location":"import_from/#applicable-classes","text":"Name Description ImportExpression an expression describing an import","title":"Applicable Classes"},{"location":"import_from/#properties","text":"Range: Uriorcurie Required: True","title":"Properties"},{"location":"import_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"import_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"import_from/#linkml-source","text":"name: import_from from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression alias: import_from domain_of: - import_expression range: uriorcurie required: true","title":"LinkML Source"},{"location":"import_map/","text":"Slot: import_map URI: linkml:import_map Applicable Classes Name Description ImportExpression an expression describing an import Properties Range: Setting Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map domain_of: - import_expression range: setting inlined: true","title":"Slot: import_map"},{"location":"import_map/#slot-import_map","text":"URI: linkml:import_map","title":"Slot: import_map"},{"location":"import_map/#applicable-classes","text":"Name Description ImportExpression an expression describing an import","title":"Applicable Classes"},{"location":"import_map/#properties","text":"Range: Setting Multivalued: True","title":"Properties"},{"location":"import_map/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"import_map/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"import_map/#linkml-source","text":"name: import_map from_schema: https://w3id.org/linkml/meta rank: 1000 domain: import_expression multivalued: true alias: import_map domain_of: - import_expression range: setting inlined: true","title":"LinkML Source"},{"location":"imported_from/","text":"Slot: imported_from the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from domain_of: - common_metadata range: string","title":"Slot: imported_from"},{"location":"imported_from/#slot-imported_from","text":"the imports entry that this element was derived from. Empty means primary source URI: linkml:imported_from","title":"Slot: imported_from"},{"location":"imported_from/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"imported_from/#properties","text":"Range: String","title":"Properties"},{"location":"imported_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"imported_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"imported_from/#linkml-source","text":"name: imported_from description: the imports entry that this element was derived from. Empty means primary source from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element readonly: supplied by the schema loader alias: imported_from domain_of: - common_metadata range: string","title":"LinkML Source"},{"location":"imports/","text":"Slot: imports other schemas that are included in this schema URI: linkml:imports Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports domain_of: - schema_definition range: uriorcurie","title":"Slot: imports"},{"location":"imports/#slot-imports","text":"other schemas that are included in this schema URI: linkml:imports","title":"Slot: imports"},{"location":"imports/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"imports/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"imports/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"imports/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"imports/#linkml-source","text":"name: imports description: other schemas that are included in this schema in_subset: - SpecificationSubset - BasicSubset - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 21 domain: schema_definition multivalued: true alias: imports domain_of: - schema_definition range: uriorcurie","title":"LinkML Source"},{"location":"in_language/","text":"Slot: in_language URI: schema:inLanguage Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language domain_of: - common_metadata range: string","title":"Slot: in_language"},{"location":"in_language/#slot-in_language","text":"URI: schema:inLanguage","title":"Slot: in_language"},{"location":"in_language/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"in_language/#properties","text":"Range: String","title":"Properties"},{"location":"in_language/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"in_language/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"in_language/#linkml-source","text":"name: in_language notes: - Use a string from IETF BCP 47 from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: schema:inLanguage alias: in_language domain_of: - common_metadata range: string","title":"LinkML Source"},{"location":"in_subset/","text":"Slot: in_subset used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: OIO:inSubset Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: SubsetDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset domain_of: - common_metadata range: subset_definition","title":"Slot: in_subset"},{"location":"in_subset/#slot-in_subset","text":"used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) URI: OIO:inSubset","title":"Slot: in_subset"},{"location":"in_subset/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"in_subset/#properties","text":"Range: SubsetDefinition Multivalued: True","title":"Properties"},{"location":"in_subset/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"in_subset/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"in_subset/#linkml-source","text":"name: in_subset description: used to indicate membership of a term in a defined subset of terms used for a particular domain or application (e.g. the translator_minimal subset holding the minimal set of predicates used in a translator knowledge graph) in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: OIO:inSubset multivalued: true alias: in_subset domain_of: - common_metadata range: subset_definition","title":"LinkML Source"},{"location":"inapplicable/","text":"Slot: inapplicable true means that the slot must not be present URI: linkml:inapplicable Properties Range: Boolean Comments By default all slots are applicable. The main use case for this slot is as an override in a subclass Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inapplicable description: true means that the slot must not be present comments: - By default all slots are applicable. The main use case for this slot is as an override in a subclass in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inapplicable range: boolean","title":"Slot: inapplicable"},{"location":"inapplicable/#slot-inapplicable","text":"true means that the slot must not be present URI: linkml:inapplicable","title":"Slot: inapplicable"},{"location":"inapplicable/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inapplicable/#comments","text":"By default all slots are applicable. The main use case for this slot is as an override in a subclass","title":"Comments"},{"location":"inapplicable/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inapplicable/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inapplicable/#linkml-source","text":"name: inapplicable description: true means that the slot must not be present comments: - By default all slots are applicable. The main use case for this slot is as an override in a subclass in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inapplicable range: boolean","title":"LinkML Source"},{"location":"include/","text":"Slot: include An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set URI: linkml:include Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: AnonymousEnumExpression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include domain_of: - enum_expression range: anonymous_enum_expression","title":"Slot: include"},{"location":"include/#slot-include","text":"An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set URI: linkml:include","title":"Slot: include"},{"location":"include/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"include/#properties","text":"Range: AnonymousEnumExpression Multivalued: True","title":"Properties"},{"location":"include/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"include/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"include/#linkml-source","text":"name: include description: An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: include domain_of: - enum_expression range: anonymous_enum_expression","title":"LinkML Source"},{"location":"include_self/","text":"Slot: include_self True if the query is reflexive URI: linkml:include_self Applicable Classes Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: Boolean Aliases reflexive Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self domain_of: - reachability_query range: boolean","title":"Slot: include_self"},{"location":"include_self/#slot-include_self","text":"True if the query is reflexive URI: linkml:include_self","title":"Slot: include_self"},{"location":"include_self/#applicable-classes","text":"Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"include_self/#properties","text":"Range: Boolean","title":"Properties"},{"location":"include_self/#aliases","text":"reflexive","title":"Aliases"},{"location":"include_self/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"include_self/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"include_self/#linkml-source","text":"name: include_self description: True if the query is reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - reflexive rank: 1000 domain: reachability_query alias: include_self domain_of: - reachability_query range: boolean","title":"LinkML Source"},{"location":"inherited/","text":"Slot: inherited true means that the value of a slot is inherited by subclasses URI: linkml:inherited Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments Inherited applies to slot values. Parent slots are always inherited by subclasses Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited domain_of: - slot_definition range: boolean","title":"Slot: inherited"},{"location":"inherited/#slot-inherited","text":"true means that the value of a slot is inherited by subclasses URI: linkml:inherited","title":"Slot: inherited"},{"location":"inherited/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inherited/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inherited/#comments","text":"Inherited applies to slot values. Parent slots are always inherited by subclasses","title":"Comments"},{"location":"inherited/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inherited/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inherited/#linkml-source","text":"name: inherited description: true means that the *value* of a slot is inherited by subclasses comments: - Inherited applies to slot values. Parent *slots* are always inherited by subclasses in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: inherited domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"inherits/","text":"Slot: inherits An enum definition that is used as the basis to create a new enum URI: linkml:inherits Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: EnumDefinition Multivalued: True Comments All permissible values for all inherited enums are copied to form the initial seed set Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits domain_of: - enum_expression range: enum_definition","title":"Slot: inherits"},{"location":"inherits/#slot-inherits","text":"An enum definition that is used as the basis to create a new enum URI: linkml:inherits","title":"Slot: inherits"},{"location":"inherits/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"inherits/#properties","text":"Range: EnumDefinition Multivalued: True","title":"Properties"},{"location":"inherits/#comments","text":"All permissible values for all inherited enums are copied to form the initial seed set","title":"Comments"},{"location":"inherits/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inherits/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inherits/#linkml-source","text":"name: inherits description: An enum definition that is used as the basis to create a new enum comments: - All permissible values for all inherited enums are copied to form the initial seed set in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression multivalued: true alias: inherits domain_of: - enum_expression range: enum_definition","title":"LinkML Source"},{"location":"inlined/","text":"Slot: inlined True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments classes without keys or identifiers are necessarily inlined as lists Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined domain_of: - slot_expression range: boolean","title":"Slot: inlined"},{"location":"inlined/#slot-inlined","text":"True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. URI: linkml:inlined","title":"Slot: inlined"},{"location":"inlined/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inlined/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inlined/#comments","text":"classes without keys or identifiers are necessarily inlined as lists","title":"Comments"},{"location":"inlined/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inlined/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inlined/#linkml-source","text":"name: inlined description: True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere. comments: - classes without keys or identifiers are necessarily inlined as lists in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 25 domain: slot_definition inherited: true alias: inlined domain_of: - slot_expression range: boolean","title":"LinkML Source"},{"location":"inlined_as_list/","text":"Slot: inlined_as_list True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting. Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list domain_of: - slot_expression range: boolean","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#slot-inlined_as_list","text":"True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. URI: linkml:inlined_as_list","title":"Slot: inlined_as_list"},{"location":"inlined_as_list/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inlined_as_list/#properties","text":"Range: Boolean","title":"Properties"},{"location":"inlined_as_list/#comments","text":"The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output. A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.","title":"Comments"},{"location":"inlined_as_list/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inlined_as_list/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inlined_as_list/#linkml-source","text":"name: inlined_as_list description: True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance. comments: - 'The default loader will accept either list or dictionary form as input. This parameter controls internal representation and output.' - 'A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key is the key or identifier and whose value is the one additional element. This form is still stored according to the inlined_as_list setting.' in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 27 domain: slot_definition inherited: true alias: inlined_as_list domain_of: - slot_expression range: boolean","title":"LinkML Source"},{"location":"interpolated/","text":"Slot: interpolated if true then the pattern is first string interpolated URI: linkml:interpolated Applicable Classes Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated domain_of: - pattern_expression range: boolean","title":"Slot: interpolated"},{"location":"interpolated/#slot-interpolated","text":"if true then the pattern is first string interpolated URI: linkml:interpolated","title":"Slot: interpolated"},{"location":"interpolated/#applicable-classes","text":"Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string","title":"Applicable Classes"},{"location":"interpolated/#properties","text":"Range: Boolean","title":"Properties"},{"location":"interpolated/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"interpolated/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"interpolated/#linkml-source","text":"name: interpolated description: if true then the pattern is first string interpolated in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: interpolated domain_of: - pattern_expression range: boolean","title":"LinkML Source"},{"location":"inverse/","text":"Slot: inverse indicates that any instance of d s r implies that there is also an instance of r s' d URI: owl:inverseOf Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: SlotDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse domain_of: - slot_definition range: slot_definition","title":"Slot: inverse"},{"location":"inverse/#slot-inverse","text":"indicates that any instance of d s r implies that there is also an instance of r s' d URI: owl:inverseOf","title":"Slot: inverse"},{"location":"inverse/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"inverse/#properties","text":"Range: SlotDefinition","title":"Properties"},{"location":"inverse/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"inverse/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"inverse/#linkml-source","text":"name: inverse description: indicates that any instance of d s r implies that there is also an instance of r s' d in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: owl:inverseOf alias: inverse domain_of: - slot_definition range: slot_definition","title":"LinkML Source"},{"location":"irreflexive/","text":"Slot: irreflexive If s is irreflexive, then there exists no i such i.s=i URI: linkml:irreflexive Inheritance relational_logical_characteristic irreflexive Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive domain_of: - slot_definition range: boolean","title":"Slot: irreflexive"},{"location":"irreflexive/#slot-irreflexive","text":"If s is irreflexive, then there exists no i such i.s=i URI: linkml:irreflexive","title":"Slot: irreflexive"},{"location":"irreflexive/#inheritance","text":"relational_logical_characteristic irreflexive","title":"Inheritance"},{"location":"irreflexive/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"irreflexive/#properties","text":"Range: Boolean","title":"Properties"},{"location":"irreflexive/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"irreflexive/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"irreflexive/#linkml-source","text":"name: irreflexive description: If s is irreflexive, then there exists no i such i.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:IrreflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: irreflexive domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"is_a/","text":"Slot: is_a A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a Applicable Classes Name Description Definition abstract base class for core metaclasses AnonymousClassExpression EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Definition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a domain_of: - definition - anonymous_class_expression range: definition","title":"Slot: is_a"},{"location":"is_a/#slot-is_a","text":"A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:is_a","title":"Slot: is_a"},{"location":"is_a/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses AnonymousClassExpression EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"is_a/#properties","text":"Range: Definition","title":"Properties"},{"location":"is_a/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_a/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_a/#linkml-source","text":"name: is_a description: A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded in_subset: - SpecificationSubset - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 11 abstract: true domain: definition alias: is_a domain_of: - definition - anonymous_class_expression range: definition","title":"LinkML Source"},{"location":"is_class_field/","text":"Slot: is_class_field indicates that for any instance, i, the domain of this slot will include an assertion of i s range URI: linkml:is_class_field Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field domain_of: - slot_definition range: boolean","title":"Slot: is_class_field"},{"location":"is_class_field/#slot-is_class_field","text":"indicates that for any instance, i, the domain of this slot will include an assertion of i s range URI: linkml:is_class_field","title":"Slot: is_class_field"},{"location":"is_class_field/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"is_class_field/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_class_field/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_class_field/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_class_field/#linkml-source","text":"name: is_class_field description: indicates that for any instance, i, the domain of this slot will include an assertion of i s range from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: is_class_field domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"is_direct/","text":"Slot: is_direct True if the reachability query should only include directly related nodes, if False then include also transitively connected URI: linkml:is_direct Applicable Classes Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: Boolean Aliases non-transitive Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct domain_of: - reachability_query range: boolean","title":"Slot: is_direct"},{"location":"is_direct/#slot-is_direct","text":"True if the reachability query should only include directly related nodes, if False then include also transitively connected URI: linkml:is_direct","title":"Slot: is_direct"},{"location":"is_direct/#applicable-classes","text":"Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"is_direct/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_direct/#aliases","text":"non-transitive","title":"Aliases"},{"location":"is_direct/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_direct/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_direct/#linkml-source","text":"name: is_direct description: True if the reachability query should only include directly related nodes, if False then include also transitively connected in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - non-transitive rank: 1000 domain: reachability_query alias: is_direct domain_of: - reachability_query range: boolean","title":"LinkML Source"},{"location":"is_grouping_slot/","text":"Slot: is_grouping_slot true if this slot is a grouping slot URI: linkml:is_grouping_slot Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot domain_of: - slot_definition range: boolean","title":"Slot: is_grouping_slot"},{"location":"is_grouping_slot/#slot-is_grouping_slot","text":"true if this slot is a grouping slot URI: linkml:is_grouping_slot","title":"Slot: is_grouping_slot"},{"location":"is_grouping_slot/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"is_grouping_slot/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_grouping_slot/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_grouping_slot/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_grouping_slot/#linkml-source","text":"name: is_grouping_slot description: true if this slot is a grouping slot in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta close_mappings: - sh:PropertyGroup rank: 1000 domain: slot_definition alias: is_grouping_slot domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"is_usage_slot/","text":"Slot: is_usage_slot True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot domain_of: - slot_definition range: boolean","title":"Slot: is_usage_slot"},{"location":"is_usage_slot/#slot-is_usage_slot","text":"True means that this slot was defined in a slot_usage situation URI: linkml:is_usage_slot","title":"Slot: is_usage_slot"},{"location":"is_usage_slot/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"is_usage_slot/#properties","text":"Range: Boolean","title":"Properties"},{"location":"is_usage_slot/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"is_usage_slot/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"is_usage_slot/#linkml-source","text":"name: is_usage_slot description: True means that this slot was defined in a slot_usage situation deprecated: Replaced by usage_slot_name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: is_usage_slot domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"key/","text":"Slot: key True means that the key slot(s) uniquely identify the container. URI: linkml:key Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments see also 'unique_key' key is inherited a given domain can have at most one key slot (restriction to be removed in the future) identifiers and keys are mutually exclusive. A given domain cannot have both a key slot is automatically required. Keys cannot be optional Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. 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Keys cannot be optional","title":"Comments"},{"location":"key/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"key/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"key/#linkml-source","text":"name: key description: True means that the key slot(s) uniquely identify the container. comments: - see also 'unique_key' - key is inherited - a given domain can have at most one key slot (restriction to be removed in the future) - identifiers and keys are mutually exclusive. A given domain cannot have both - a key slot is automatically required. 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SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Datetime Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on domain_of: - definition range: datetime","title":"Slot: last_updated_on"},{"location":"last_updated_on/#slot-last_updated_on","text":"time at which the element was last updated URI: pav:lastUpdatedOn","title":"Slot: last_updated_on"},{"location":"last_updated_on/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"last_updated_on/#properties","text":"Range: Datetime","title":"Properties"},{"location":"last_updated_on/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"last_updated_on/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"last_updated_on/#linkml-source","text":"name: last_updated_on description: time at which the element was last updated in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: pav:lastUpdatedOn alias: last_updated_on domain_of: - definition range: datetime","title":"LinkML Source"},{"location":"license/","text":"Slot: license license for the schema URI: dcterms:license Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license domain_of: - schema_definition range: string","title":"Slot: license"},{"location":"license/#slot-license","text":"license for the schema URI: dcterms:license","title":"Slot: license"},{"location":"license/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"license/#properties","text":"Range: String","title":"Properties"},{"location":"license/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"license/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"license/#linkml-source","text":"name: license description: license for the schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 31 domain: schema_definition slot_uri: dcterms:license alias: license domain_of: - schema_definition range: string","title":"LinkML Source"},{"location":"linkml-fol/","text":"","title":"Linkml fol"},{"location":"list_elements_ordered/","text":"Slot: list_elements_ordered If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed URI: linkml:list_elements_ordered Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments should only be used with multivalued slots Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered domain_of: - slot_definition range: boolean","title":"Slot: list_elements_ordered"},{"location":"list_elements_ordered/#slot-list_elements_ordered","text":"If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed URI: linkml:list_elements_ordered","title":"Slot: list_elements_ordered"},{"location":"list_elements_ordered/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"list_elements_ordered/#properties","text":"Range: Boolean","title":"Properties"},{"location":"list_elements_ordered/#comments","text":"should only be used with multivalued slots","title":"Comments"},{"location":"list_elements_ordered/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"list_elements_ordered/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"list_elements_ordered/#linkml-source","text":"name: list_elements_ordered description: If True, then the order of elements of a multivalued slot is guaranteed to be preserved. If False, the order may still be preserved but this is not guaranteed comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_ordered domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"list_elements_unique/","text":"Slot: list_elements_unique If True, then there must be no duplicates in the elements of a multivalued slot URI: linkml:list_elements_unique Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments should only be used with multivalued slots Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique domain_of: - slot_definition range: boolean","title":"Slot: list_elements_unique"},{"location":"list_elements_unique/#slot-list_elements_unique","text":"If True, then there must be no duplicates in the elements of a multivalued slot URI: linkml:list_elements_unique","title":"Slot: list_elements_unique"},{"location":"list_elements_unique/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"list_elements_unique/#properties","text":"Range: Boolean","title":"Properties"},{"location":"list_elements_unique/#comments","text":"should only be used with multivalued slots","title":"Comments"},{"location":"list_elements_unique/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"list_elements_unique/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"list_elements_unique/#linkml-source","text":"name: list_elements_unique description: If True, then there must be no duplicates in the elements of a multivalued slot comments: - should only be used with multivalued slots in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: list_elements_unique domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"list_value_specification_constant/","text":"Slot: list_value_specification_constant Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant URI: linkml:list_value_specification_constant Inheritance list_value_specification_constant value_presence equals_string equals_number equals_expression minimum_cardinality maximum_cardinality equals_string_in equals_number_in has_member all_members Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: list_value_specification_constant description: Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: list_value_specification_constant range: string","title":"Slot: list_value_specification_constant"},{"location":"list_value_specification_constant/#slot-list_value_specification_constant","text":"Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant URI: linkml:list_value_specification_constant","title":"Slot: list_value_specification_constant"},{"location":"list_value_specification_constant/#inheritance","text":"list_value_specification_constant value_presence equals_string equals_number equals_expression minimum_cardinality maximum_cardinality equals_string_in equals_number_in has_member all_members","title":"Inheritance"},{"location":"list_value_specification_constant/#properties","text":"Range: String","title":"Properties"},{"location":"list_value_specification_constant/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"list_value_specification_constant/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"list_value_specification_constant/#linkml-source","text":"name: list_value_specification_constant description: Grouping for metamodel slots that constrain members of a multivalued slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: list_value_specification_constant range: string","title":"LinkML Source"},{"location":"literal_form/","text":"Slot: literal_form The literal lexical form of a structured alias URI: skosxl:literalForm Applicable Classes Name Description StructuredAlias object that contains meta data about a synonym or alias including where it ca... Properties Range: String Required: True Aliases alias_name string_value Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form domain_of: - structured_alias range: string required: true","title":"Slot: literal_form"},{"location":"literal_form/#slot-literal_form","text":"The literal lexical form of a structured alias URI: skosxl:literalForm","title":"Slot: literal_form"},{"location":"literal_form/#applicable-classes","text":"Name Description StructuredAlias object that contains meta data about a synonym or alias including where it ca...","title":"Applicable Classes"},{"location":"literal_form/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"literal_form/#aliases","text":"alias_name string_value","title":"Aliases"},{"location":"literal_form/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"literal_form/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"literal_form/#linkml-source","text":"name: literal_form description: The literal lexical form of a structured alias from_schema: https://w3id.org/linkml/meta aliases: - alias_name - string_value rank: 1000 domain: structured_alias slot_uri: skosxl:literalForm alias: literal_form domain_of: - structured_alias range: string required: true","title":"LinkML Source"},{"location":"local_name_source/","text":"Slot: local_name_source the ncname of the source of the name URI: linkml:local_name_source Applicable Classes Name Description LocalName an attributed label Properties Range: Ncname Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: local_name_source description: the ncname of the source of the name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name key: true alias: local_name_source domain_of: - local_name range: ncname","title":"Slot: local_name_source"},{"location":"local_name_source/#slot-local_name_source","text":"the ncname of the source of the name URI: linkml:local_name_source","title":"Slot: local_name_source"},{"location":"local_name_source/#applicable-classes","text":"Name Description LocalName an attributed label","title":"Applicable Classes"},{"location":"local_name_source/#properties","text":"Range: Ncname","title":"Properties"},{"location":"local_name_source/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"local_name_source/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"local_name_source/#linkml-source","text":"name: local_name_source description: the ncname of the source of the name from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name key: true alias: local_name_source domain_of: - local_name range: ncname","title":"LinkML Source"},{"location":"local_name_value/","text":"Slot: local_name_value a name assigned to an element in a given ontology URI: skos:altLabel Applicable Classes Name Description LocalName an attributed label Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: local_name_value description: a name assigned to an element in a given ontology from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name slot_uri: skos:altLabel alias: local_name_value domain_of: - local_name range: string required: true","title":"Slot: local_name_value"},{"location":"local_name_value/#slot-local_name_value","text":"a name assigned to an element in a given ontology URI: skos:altLabel","title":"Slot: local_name_value"},{"location":"local_name_value/#applicable-classes","text":"Name Description LocalName an attributed label","title":"Applicable Classes"},{"location":"local_name_value/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"local_name_value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"local_name_value/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"local_name_value/#linkml-source","text":"name: local_name_value description: a name assigned to an element in a given ontology from_schema: https://w3id.org/linkml/meta rank: 1000 domain: local_name slot_uri: skos:altLabel alias: local_name_value domain_of: - local_name range: string required: true","title":"LinkML Source"},{"location":"local_names/","text":"Slot: local_names URI: linkml:local_names Applicable Classes Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: LocalName Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names domain_of: - element range: local_name inlined: true","title":"Slot: local_names"},{"location":"local_names/#slot-local_names","text":"URI: linkml:local_names","title":"Slot: local_names"},{"location":"local_names/#applicable-classes","text":"Name Description Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"local_names/#properties","text":"Range: LocalName Multivalued: True","title":"Properties"},{"location":"local_names/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"local_names/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"local_names/#linkml-source","text":"name: local_names from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element multivalued: true alias: local_names domain_of: - element range: local_name inlined: true","title":"LinkML Source"},{"location":"locally_reflexive/","text":"Slot: locally_reflexive If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i URI: linkml:locally_reflexive Inheritance relational_logical_characteristic locally_reflexive Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive domain_of: - slot_definition range: boolean","title":"Slot: locally_reflexive"},{"location":"locally_reflexive/#slot-locally_reflexive","text":"If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i URI: linkml:locally_reflexive","title":"Slot: locally_reflexive"},{"location":"locally_reflexive/#inheritance","text":"relational_logical_characteristic locally_reflexive","title":"Inheritance"},{"location":"locally_reflexive/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"locally_reflexive/#properties","text":"Range: Boolean","title":"Properties"},{"location":"locally_reflexive/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"locally_reflexive/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"locally_reflexive/#linkml-source","text":"name: locally_reflexive description: If s is locally_reflexive, then i.s=i for all instances i where s is a class slot for the type of i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: locally_reflexive domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"mappings/","text":"Slot: mappings A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. URI: skos:mappingRelation Inheritance mappings exact_mappings close_mappings related_mappings narrow_mappings broad_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uriorcurie Multivalued: True Aliases xrefs identifiers alternate identifiers alternate ids Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/mappings LinkML Source name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings domain_of: - common_metadata range: uriorcurie","title":"Slot: mappings"},{"location":"mappings/#slot-mappings","text":"A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. 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AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://w3id.org/linkml/mappings aliases: - xrefs - identifiers - alternate identifiers - alternate ids rank: 1000 slot_uri: skos:mappingRelation multivalued: true alias: mappings domain_of: - common_metadata range: uriorcurie","title":"LinkML Source"},{"location":"matches/","text":"Slot: matches Specifies a match query that is used to calculate the list of permissible values URI: linkml:matches Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... 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Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: modified_by description: agent that modified the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: oslc:modifiedBy alias: modified_by domain_of: - definition range: uriorcurie","title":"Slot: modified_by"},{"location":"modified_by/#slot-modified_by","text":"agent that modified the element URI: oslc:modifiedBy","title":"Slot: modified_by"},{"location":"modified_by/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... 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SlotExpression an expression that constrains the range of values a slot can take ClassExpression A boolean expression that can be used to dynamically determine membership of ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"none_of/#properties","text":"Range: Expression Multivalued: True","title":"Properties"},{"location":"none_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"none_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"none_of/#linkml-source","text":"name: none_of description: holds if none of the expressions hold in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - sh:not rank: 105 is_a: boolean_slot multivalued: true alias: none_of domain_of: - type_expression - path_expression - slot_expression - class_expression range: expression","title":"LinkML Source"},{"location":"notes/","text":"Slot: notes editorial notes about an element intended for internal consumption URI: skos:editorialNote Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... 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It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Definition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner domain_of: - slot_definition range: definition","title":"Slot: owner"},{"location":"owner/#slot-owner","text":"the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot URI: linkml:owner","title":"Slot: owner"},{"location":"owner/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"owner/#properties","text":"Range: Definition","title":"Properties"},{"location":"owner/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"owner/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"owner/#linkml-source","text":"name: owner description: the \"owner\" of the slot. It is the class if it appears in the slots list, otherwise the declaring slot deprecated: Will be replaced by domain_of and eventually removed from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by loader -- either class domain or slot domain alias: owner domain_of: - slot_definition range: definition","title":"LinkML Source"},{"location":"partial_match/","text":"Slot: partial_match if true then the pattern must match the whole string, as if enclosed in ^...$ URI: linkml:partial_match Applicable Classes Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression alias: partial_match domain_of: - pattern_expression range: boolean","title":"Slot: partial_match"},{"location":"partial_match/#slot-partial_match","text":"if true then the pattern must match the whole string, as if enclosed in ^...$ URI: linkml:partial_match","title":"Slot: partial_match"},{"location":"partial_match/#applicable-classes","text":"Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string","title":"Applicable Classes"},{"location":"partial_match/#properties","text":"Range: Boolean","title":"Properties"},{"location":"partial_match/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"partial_match/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"partial_match/#linkml-source","text":"name: partial_match description: if true then the pattern must match the whole string, as if enclosed in ^...$ in_subset: 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Range"},{"location":"path_expression_any_of/#parents","text":"is_a: any_of","title":"Parents"},{"location":"path_expression_any_of/#children","text":"","title":"Children"},{"location":"path_expression_any_of/#used-by","text":"PathExpression","title":"Used by"},{"location":"path_expression_any_of/#other-properties","text":"In Subsets: SpecificationSubset Exact Mappings: sh:or","title":"Other properties"},{"location":"path_expression_exactly_one_of/","text":"Slot: exactly_one_of holds if only one of the expressions hold URI: linkml:path_expression_exactly_one_of Domain and Range PathExpression \u2192 0..* PathExpression Parents is_a: exactly_one_of Children Used by PathExpression Other properties In Subsets: SpecificationSubset Exact Mappings: sh:xone","title":"Slot: exactly_one_of"},{"location":"path_expression_exactly_one_of/#slot-exactly_one_of","text":"holds if only one of the expressions hold URI: linkml:path_expression_exactly_one_of","title":"Slot: exactly_one_of"},{"location":"path_expression_exactly_one_of/#domain-and-range","text":"PathExpression \u2192 0..* PathExpression","title":"Domain and Range"},{"location":"path_expression_exactly_one_of/#parents","text":"is_a: exactly_one_of","title":"Parents"},{"location":"path_expression_exactly_one_of/#children","text":"","title":"Children"},{"location":"path_expression_exactly_one_of/#used-by","text":"PathExpression","title":"Used by"},{"location":"path_expression_exactly_one_of/#other-properties","text":"In Subsets: SpecificationSubset Exact Mappings: sh:xone","title":"Other properties"},{"location":"path_expression_followed_by/","text":"Slot: followed_by in a sequential list, this indicates the next member URI: linkml:path_expression_followed_by Domain and Range PathExpression \u2192 0..1 PathExpression Parents is_a: followed_by Children Used by PathExpression","title":"Slot: followed_by"},{"location":"path_expression_followed_by/#slot-followed_by","text":"in a sequential list, this indicates the next member URI: linkml:path_expression_followed_by","title":"Slot: followed_by"},{"location":"path_expression_followed_by/#domain-and-range","text":"PathExpression \u2192 0..1 PathExpression","title":"Domain and Range"},{"location":"path_expression_followed_by/#parents","text":"is_a: followed_by","title":"Parents"},{"location":"path_expression_followed_by/#children","text":"","title":"Children"},{"location":"path_expression_followed_by/#used-by","text":"PathExpression","title":"Used by"},{"location":"path_expression_none_of/","text":"Slot: none_of holds if none of the expressions hold URI: linkml:path_expression_none_of Domain and Range PathExpression \u2192 0..* PathExpression Parents is_a: none_of Children Used by PathExpression Other properties In Subsets: SpecificationSubset Exact Mappings: sh:not","title":"Slot: none_of"},{"location":"path_expression_none_of/#slot-none_of","text":"holds if none of the expressions hold URI: linkml:path_expression_none_of","title":"Slot: none_of"},{"location":"path_expression_none_of/#domain-and-range","text":"PathExpression \u2192 0..* PathExpression","title":"Domain and Range"},{"location":"path_expression_none_of/#parents","text":"is_a: none_of","title":"Parents"},{"location":"path_expression_none_of/#children","text":"","title":"Children"},{"location":"path_expression_none_of/#used-by","text":"PathExpression","title":"Used by"},{"location":"path_expression_none_of/#other-properties","text":"In Subsets: SpecificationSubset Exact Mappings: sh:not","title":"Other properties"},{"location":"path_rule/","text":"Slot: path_rule a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts URI: linkml:path_rule Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: PathExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule domain_of: - slot_definition range: path_expression","title":"Slot: path_rule"},{"location":"path_rule/#slot-path_rule","text":"a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts URI: linkml:path_rule","title":"Slot: path_rule"},{"location":"path_rule/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"path_rule/#properties","text":"Range: PathExpression","title":"Properties"},{"location":"path_rule/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"path_rule/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"path_rule/#linkml-source","text":"name: path_rule description: a rule for inferring a slot assignment based on evaluating a path through a sequence of slot assignemnts from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition alias: path_rule domain_of: - slot_definition range: path_expression","title":"LinkML Source"},{"location":"pattern/","text":"Slot: pattern the string value of the slot must conform to this regular expression expressed in the string URI: linkml:pattern Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern domain_of: - type_expression - slot_expression range: string","title":"Slot: pattern"},{"location":"pattern/#slot-pattern","text":"the string value of the slot must conform to this regular expression expressed in the string URI: linkml:pattern","title":"Slot: pattern"},{"location":"pattern/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"pattern/#properties","text":"Range: String","title":"Properties"},{"location":"pattern/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"pattern/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"pattern/#linkml-source","text":"name: pattern description: the string value of the slot must conform to this regular expression expressed in the string in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 35 domain: definition inherited: true alias: pattern domain_of: - type_expression - slot_expression range: string","title":"LinkML Source"},{"location":"permissible_value_is_a/","text":"Slot: is_a A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:permissible_value_is_a Domain and Range PermissibleValue \u2192 0..1 PermissibleValue Parents is_a: is_a Children Used by PermissibleValue Other properties In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile","title":"Slot: is_a"},{"location":"permissible_value_is_a/#slot-is_a","text":"A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded URI: linkml:permissible_value_is_a","title":"Slot: is_a"},{"location":"permissible_value_is_a/#domain-and-range","text":"PermissibleValue \u2192 0..1 PermissibleValue","title":"Domain and Range"},{"location":"permissible_value_is_a/#parents","text":"is_a: is_a","title":"Parents"},{"location":"permissible_value_is_a/#children","text":"","title":"Children"},{"location":"permissible_value_is_a/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"permissible_value_is_a/#other-properties","text":"In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile","title":"Other properties"},{"location":"permissible_value_mixins/","text":"Slot: mixins A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. URI: linkml:permissible_value_mixins Domain and Range PermissibleValue \u2192 0..* PermissibleValue Parents is_a: mixins Children Used by PermissibleValue Other properties Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile See also: https://en.wikipedia.org/wiki/Mixin","title":"Slot: mixins"},{"location":"permissible_value_mixins/#slot-mixins","text":"A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. URI: linkml:permissible_value_mixins","title":"Slot: mixins"},{"location":"permissible_value_mixins/#domain-and-range","text":"PermissibleValue \u2192 0..* PermissibleValue","title":"Domain and Range"},{"location":"permissible_value_mixins/#parents","text":"is_a: mixins","title":"Parents"},{"location":"permissible_value_mixins/#children","text":"","title":"Children"},{"location":"permissible_value_mixins/#used-by","text":"PermissibleValue","title":"Used by"},{"location":"permissible_value_mixins/#other-properties","text":"Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile See also: https://en.wikipedia.org/wiki/Mixin","title":"Other properties"},{"location":"permissible_values/","text":"Slot: permissible_values A list of possible values for a slot range URI: linkml:permissible_values Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... 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SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - then - head - consequents close_mappings: - swrl:body rank: 113 alias: postconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"preconditions/","text":"Slot: preconditions an expression that must hold in order for the rule to be applicable to an instance URI: sh:condition Applicable Classes Name Description ClassRule A rule that applies to instances of a class Properties Range: AnonymousClassExpression Aliases if body antecedents Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"Slot: preconditions"},{"location":"preconditions/#slot-preconditions","text":"an expression that must hold in order for the rule to be applicable to an instance URI: sh:condition","title":"Slot: preconditions"},{"location":"preconditions/#applicable-classes","text":"Name Description ClassRule A rule that applies to instances of a class","title":"Applicable Classes"},{"location":"preconditions/#properties","text":"Range: AnonymousClassExpression","title":"Properties"},{"location":"preconditions/#aliases","text":"if body antecedents","title":"Aliases"},{"location":"preconditions/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"preconditions/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"preconditions/#linkml-source","text":"name: preconditions description: an expression that must hold in order for the rule to be applicable to an instance in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - if - body - antecedents close_mappings: - swrl:body rank: 111 slot_uri: sh:condition alias: preconditions domain_of: - class_rule range: anonymous_class_expression inlined: true","title":"LinkML Source"},{"location":"prefix_prefix/","text":"Slot: prefix_prefix the nsname (sans ':' for a given prefix) URI: sh:prefix Applicable Classes Name Description Prefix prefix URI tuple Properties Range: Ncname Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix domain_of: - prefix range: ncname","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#slot-prefix_prefix","text":"the nsname (sans ':' for a given prefix) URI: sh:prefix","title":"Slot: prefix_prefix"},{"location":"prefix_prefix/#applicable-classes","text":"Name Description Prefix prefix URI tuple","title":"Applicable Classes"},{"location":"prefix_prefix/#properties","text":"Range: Ncname","title":"Properties"},{"location":"prefix_prefix/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"prefix_prefix/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"prefix_prefix/#linkml-source","text":"name: prefix_prefix description: the nsname (sans ':' for a given prefix) in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1 domain: prefix slot_uri: sh:prefix key: true alias: prefix_prefix domain_of: - prefix range: ncname","title":"LinkML Source"},{"location":"prefix_reference/","text":"Slot: prefix_reference A URI associated with a given prefix URI: sh:namespace Applicable Classes Name Description Prefix prefix URI tuple Properties Range: Uri Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference domain_of: - prefix range: uri required: true","title":"Slot: prefix_reference"},{"location":"prefix_reference/#slot-prefix_reference","text":"A URI associated with a given prefix URI: sh:namespace","title":"Slot: prefix_reference"},{"location":"prefix_reference/#applicable-classes","text":"Name Description Prefix prefix URI tuple","title":"Applicable Classes"},{"location":"prefix_reference/#properties","text":"Range: Uri Required: True","title":"Properties"},{"location":"prefix_reference/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"prefix_reference/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"prefix_reference/#linkml-source","text":"name: prefix_reference description: A URI associated with a given prefix in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 2 domain: prefix slot_uri: sh:namespace alias: prefix_reference domain_of: - prefix range: uri required: true","title":"LinkML Source"},{"location":"prefixes/","text":"Slot: prefixes prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: sh:declare Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Prefix Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes domain_of: - schema_definition range: prefix inlined: true","title":"Slot: prefixes"},{"location":"prefixes/#slot-prefixes","text":"prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes URI: sh:declare","title":"Slot: prefixes"},{"location":"prefixes/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"prefixes/#properties","text":"Range: Prefix Multivalued: True","title":"Properties"},{"location":"prefixes/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"prefixes/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"prefixes/#linkml-source","text":"name: prefixes description: prefix / URI definitions to be added to the context beyond those fetched from prefixcommons in id prefixes in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: schema_definition slot_uri: sh:declare multivalued: true alias: prefixes domain_of: - schema_definition range: prefix inlined: true","title":"LinkML Source"},{"location":"presence_enum/","text":"Enum: presence_enum enumeration of conditions by which a slot value should be set URI: linkml:presence_enum Other properties Permissible Values Text Description Meaning Other Information UNCOMMITTED PRESENT ABSENT","title":"Enum: presence_enum"},{"location":"presence_enum/#enum-presence_enum","text":"enumeration of conditions by which a slot value should be set URI: linkml:presence_enum","title":"Enum: presence_enum"},{"location":"presence_enum/#other-properties","text":"","title":"Other properties"},{"location":"presence_enum/#permissible-values","text":"Text Description Meaning Other Information UNCOMMITTED PRESENT ABSENT","title":"Permissible Values"},{"location":"publisher/","text":"Slot: publisher An entity responsible for making the resource available URI: dcterms:publisher Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: publisher description: An entity responsible for making the resource available in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:publisher alias: publisher range: uriorcurie","title":"Slot: publisher"},{"location":"publisher/#slot-publisher","text":"An entity responsible for making the resource available URI: dcterms:publisher","title":"Slot: publisher"},{"location":"publisher/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"publisher/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"publisher/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"publisher/#linkml-source","text":"name: publisher description: An entity responsible for making the resource available in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: element slot_uri: dcterms:publisher alias: publisher range: uriorcurie","title":"LinkML Source"},{"location":"pv_formula/","text":"Slot: pv_formula Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: PvFormulaOptions Comments you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula domain_of: - enum_expression range: pv_formula_options","title":"Slot: pv_formula"},{"location":"pv_formula/#slot-pv_formula","text":"Defines the specific formula to be used to generate the permissible values. URI: linkml:pv_formula","title":"Slot: pv_formula"},{"location":"pv_formula/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"pv_formula/#properties","text":"Range: PvFormulaOptions","title":"Properties"},{"location":"pv_formula/#comments","text":"you cannot have BOTH the permissible_values and permissible_value_formula tag code_set must be supplied for this to be valid","title":"Comments"},{"location":"pv_formula/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"pv_formula/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"pv_formula/#linkml-source","text":"name: pv_formula description: Defines the specific formula to be used to generate the permissible values. comments: - you cannot have BOTH the permissible_values and permissible_value_formula tag - code_set must be supplied for this to be valid in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: pv_formula domain_of: - enum_expression range: pv_formula_options","title":"LinkML Source"},{"location":"pv_formula_options/","text":"Enum: pv_formula_options The formula used to generate the set of permissible values from the code_set values URI: linkml:pv_formula_options Other properties In Subsets: SpecificationSubset BasicSubset Permissible Values Text Description Meaning Other Information CODE The permissible values are the set of possible codes in the code set CURIE The permissible values are the set of CURIES in the code set URI The permissible values are the set of code URIs in the code set FHIR_CODING The permissible values are the set of FHIR coding elements derived from the code set","title":"Enum: pv_formula_options"},{"location":"pv_formula_options/#enum-pv_formula_options","text":"The formula used to generate the set of permissible values from the code_set values URI: linkml:pv_formula_options","title":"Enum: pv_formula_options"},{"location":"pv_formula_options/#other-properties","text":"In Subsets: SpecificationSubset BasicSubset","title":"Other properties"},{"location":"pv_formula_options/#permissible-values","text":"Text Description Meaning Other Information CODE The permissible values are the set of possible codes in the code set CURIE The permissible values are the set of CURIES in the code set URI The permissible values are the set of code URIs in the code set FHIR_CODING The permissible values are the set of FHIR coding elements derived from the code set","title":"Permissible Values"},{"location":"range/","text":"Slot: range _defines the type of the object of the slot. Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 _ URI: linkml:range Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Element Aliases value domain Comments range is underspecified, as not all elements can appear as the range of a slot. Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: range description: \"defines the type of the object of the slot. 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Given the following slot definition S1: domain: C1 range: C2 the declaration X: S1: Y implicitly asserts Y is an instance of C2 _ URI: linkml:range","title":"Slot: range"},{"location":"range/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"range/#properties","text":"Range: Element","title":"Properties"},{"location":"range/#aliases","text":"value domain","title":"Aliases"},{"location":"range/#comments","text":"range is underspecified, as not all elements can appear as the range of a slot.","title":"Comments"},{"location":"range/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"range/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"range/#linkml-source","text":"name: range description: \"defines the type of the object of the slot. Given the following slot\\ \\ definition\\n S1:\\n domain: C1\\n range: C2\\nthe declaration\\n X:\\n \\ \\ S1: Y\\n\\nimplicitly asserts Y is an instance of C2\\n\" comments: - range is underspecified, as not all elements can appear as the range of a slot. in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta aliases: - value domain rank: 1000 domain: slot_definition inherited: true ifabsent: default_range alias: range domain_of: - slot_expression range: element","title":"LinkML Source"},{"location":"range_expression/","text":"Slot: range_expression A range that is described as a boolean expression combining existing ranges URI: linkml:range_expression Applicable Classes Name Description PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: AnonymousClassExpression Comments one use for this is being able to describe a range using any_of expressions, for example to combine two enums Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression","title":"Slot: range_expression"},{"location":"range_expression/#slot-range_expression","text":"A range that is described as a boolean expression combining existing ranges URI: linkml:range_expression","title":"Slot: range_expression"},{"location":"range_expression/#applicable-classes","text":"Name Description PathExpression An expression that describes an abstract path from an object to another throu... SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"range_expression/#properties","text":"Range: AnonymousClassExpression","title":"Properties"},{"location":"range_expression/#comments","text":"one use for this is being able to describe a range using any_of expressions, for example to combine two enums","title":"Comments"},{"location":"range_expression/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"range_expression/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"range_expression/#linkml-source","text":"name: range_expression description: A range that is described as a boolean expression combining existing ranges comments: - one use for this is being able to describe a range using any_of expressions, for example to combine two enums in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_expression alias: range_expression domain_of: - path_expression - slot_expression range: anonymous_class_expression","title":"LinkML Source"},{"location":"rank/","text":"Slot: rank the relative order in which the element occurs, lower values are given precedence URI: sh:order Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions ClassRule A rule that applies to instances of a class Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Integer Aliases order precedence display order Comments the rank of an element does not affect the semantics Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank domain_of: - common_metadata - class_rule range: integer","title":"Slot: rank"},{"location":"rank/#slot-rank","text":"the relative order in which the element occurs, lower values are given precedence URI: sh:order","title":"Slot: rank"},{"location":"rank/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions ClassRule A rule that applies to instances of a class Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"rank/#properties","text":"Range: Integer","title":"Properties"},{"location":"rank/#aliases","text":"order precedence display order","title":"Aliases"},{"location":"rank/#comments","text":"the rank of an element does not affect the semantics","title":"Comments"},{"location":"rank/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"rank/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"rank/#linkml-source","text":"name: rank description: the relative order in which the element occurs, lower values are given precedence comments: - the rank of an element does not affect the semantics in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - order - precedence - display order exact_mappings: - qudt:order - qb:order rank: 51 slot_uri: sh:order alias: rank domain_of: - common_metadata - class_rule range: integer","title":"LinkML Source"},{"location":"reachable_from/","text":"Slot: reachable_from Specifies a query for obtaining a list of permissible values based on graph reachability URI: linkml:reachable_from Applicable Classes Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ... Properties Range: ReachabilityQuery Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from domain_of: - enum_expression range: reachability_query","title":"Slot: reachable_from"},{"location":"reachable_from/#slot-reachable_from","text":"Specifies a query for obtaining a list of permissible values based on graph reachability URI: linkml:reachable_from","title":"Slot: reachable_from"},{"location":"reachable_from/#applicable-classes","text":"Name Description EnumExpression An expression that constrains the range of a slot AnonymousEnumExpression An enum_expression that is not named EnumDefinition an element whose instances must be drawn from a specified set of permissible ...","title":"Applicable Classes"},{"location":"reachable_from/#properties","text":"Range: ReachabilityQuery","title":"Properties"},{"location":"reachable_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reachable_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reachable_from/#linkml-source","text":"name: reachable_from description: Specifies a query for obtaining a list of permissible values based on graph reachability in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: enum_expression alias: reachable_from domain_of: - enum_expression range: reachability_query","title":"LinkML Source"},{"location":"readonly/","text":"Slot: readonly If present, slot is read only. Text explains why URI: linkml:readonly Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly domain_of: - slot_definition range: string","title":"Slot: readonly"},{"location":"readonly/#slot-readonly","text":"If present, slot is read only. Text explains why URI: linkml:readonly","title":"Slot: readonly"},{"location":"readonly/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"readonly/#properties","text":"Range: String","title":"Properties"},{"location":"readonly/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"readonly/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"readonly/#linkml-source","text":"name: readonly description: If present, slot is read only. Text explains why from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: readonly domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"recommended/","text":"Slot: recommended true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data See Also https://github.com/linkml/linkml/issues/177 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended domain_of: - slot_expression range: boolean","title":"Slot: recommended"},{"location":"recommended/#slot-recommended","text":"true means that the slot should be present in the loaded definition, but this is not required URI: linkml:recommended","title":"Slot: recommended"},{"location":"recommended/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"recommended/#properties","text":"Range: Boolean","title":"Properties"},{"location":"recommended/#comments","text":"This is to be used where not all data is expected to conform to having a required field If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data","title":"Comments"},{"location":"recommended/#see-also","text":"https://github.com/linkml/linkml/issues/177","title":"See Also"},{"location":"recommended/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"recommended/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"recommended/#linkml-source","text":"name: recommended description: true means that the slot should be present in the loaded definition, but this is not required comments: - This is to be used where not all data is expected to conform to having a required field - If a slot is recommended, and it is not populated, applications must not treat this as an error. Applications may use this to inform the user of missing data in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/linkml/issues/177 rank: 9 domain: slot_definition inherited: true alias: recommended domain_of: - slot_expression range: boolean","title":"LinkML Source"},{"location":"reflexive/","text":"Slot: reflexive If s is reflexive, then i.s=i for all instances i URI: linkml:reflexive Inheritance relational_logical_characteristic reflexive Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Comments it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive domain_of: - slot_definition range: boolean","title":"Slot: reflexive"},{"location":"reflexive/#slot-reflexive","text":"If s is reflexive, then i.s=i for all instances i URI: linkml:reflexive","title":"Slot: reflexive"},{"location":"reflexive/#inheritance","text":"relational_logical_characteristic reflexive","title":"Inheritance"},{"location":"reflexive/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"reflexive/#properties","text":"Range: Boolean","title":"Properties"},{"location":"reflexive/#comments","text":"it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive","title":"Comments"},{"location":"reflexive/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reflexive/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reflexive/#linkml-source","text":"name: reflexive description: If s is reflexive, then i.s=i for all instances i comments: - it is rare for a property to be reflexive, this characteristic is added for completeness, consider instead locally_reflexive in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:ReflexiveProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: reflexive domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"reflexive_transitive_form_of/","text":"Slot: reflexive_transitive_form_of transitive_form_of including the reflexive case URI: linkml:reflexive_transitive_form_of Inheritance transitive_form_of reflexive_transitive_form_of Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: SlotDefinition Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of domain_of: - slot_definition range: slot_definition","title":"Slot: reflexive_transitive_form_of"},{"location":"reflexive_transitive_form_of/#slot-reflexive_transitive_form_of","text":"transitive_form_of including the reflexive case URI: linkml:reflexive_transitive_form_of","title":"Slot: reflexive_transitive_form_of"},{"location":"reflexive_transitive_form_of/#inheritance","text":"transitive_form_of reflexive_transitive_form_of","title":"Inheritance"},{"location":"reflexive_transitive_form_of/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"reflexive_transitive_form_of/#properties","text":"Range: SlotDefinition","title":"Properties"},{"location":"reflexive_transitive_form_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reflexive_transitive_form_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reflexive_transitive_form_of/#linkml-source","text":"name: reflexive_transitive_form_of description: transitive_form_of including the reflexive case in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: transitive_form_of alias: reflexive_transitive_form_of domain_of: - slot_definition range: slot_definition","title":"LinkML Source"},{"location":"related_mappings/","text":"Slot: related_mappings A list of terms from different schemas or terminology systems that have related meaning. URI: skos:relatedMatch Inheritance mappings related_mappings Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/mappings LinkML Source name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings domain_of: - common_metadata range: uriorcurie","title":"Slot: related_mappings"},{"location":"related_mappings/#slot-related_mappings","text":"A list of terms from different schemas or terminology systems that have related meaning. URI: skos:relatedMatch","title":"Slot: related_mappings"},{"location":"related_mappings/#inheritance","text":"mappings related_mappings","title":"Inheritance"},{"location":"related_mappings/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"related_mappings/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"related_mappings/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"related_mappings/#schema-source","text":"from schema: https://w3id.org/linkml/mappings","title":"Schema Source"},{"location":"related_mappings/#linkml-source","text":"name: related mappings description: A list of terms from different schemas or terminology systems that have related meaning. from_schema: https://w3id.org/linkml/mappings rank: 1000 is_a: mappings slot_uri: skos:relatedMatch multivalued: true inherited: false alias: related_mappings domain_of: - common_metadata range: uriorcurie","title":"LinkML Source"},{"location":"relational_logical_characteristic/","text":"Slot: relational_logical_characteristic A property of a slot that pertains to its logical properties URI: linkml:relational_logical_characteristic Inheritance relational_logical_characteristic symmetric asymmetric reflexive irreflexive locally_reflexive transitive Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: relational_logical_characteristic description: A property of a slot that pertains to its logical properties from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true domain: slot_definition alias: relational_logical_characteristic range: boolean","title":"Slot: relational_logical_characteristic"},{"location":"relational_logical_characteristic/#slot-relational_logical_characteristic","text":"A property of a slot that pertains to its logical properties URI: linkml:relational_logical_characteristic","title":"Slot: relational_logical_characteristic"},{"location":"relational_logical_characteristic/#inheritance","text":"relational_logical_characteristic symmetric asymmetric reflexive irreflexive locally_reflexive transitive","title":"Inheritance"},{"location":"relational_logical_characteristic/#properties","text":"Range: Boolean","title":"Properties"},{"location":"relational_logical_characteristic/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"relational_logical_characteristic/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"relational_logical_characteristic/#linkml-source","text":"name: relational_logical_characteristic description: A property of a slot that pertains to its logical properties from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true domain: slot_definition alias: relational_logical_characteristic range: boolean","title":"LinkML Source"},{"location":"relational_role/","text":"Slot: relational_role the role a slot on a relationship class plays, for example, the subject, object or predicate roles URI: linkml:relational_role Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: RelationalRoleEnum Aliases reification_role Comments this should only be used on slots that are applicable to class that represent relationships in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: relational_role description: the role a slot on a relationship class plays, for example, the subject, object or predicate roles comments: - this should only be used on slots that are applicable to class that represent relationships - in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary - in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes from_schema: https://w3id.org/linkml/meta aliases: - reification_role rank: 1000 status: testing domain: slot_definition inherited: true alias: relational_role domain_of: - slot_definition range: relational_role_enum","title":"Slot: relational_role"},{"location":"relational_role/#slot-relational_role","text":"the role a slot on a relationship class plays, for example, the subject, object or predicate roles URI: linkml:relational_role","title":"Slot: relational_role"},{"location":"relational_role/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"relational_role/#properties","text":"Range: RelationalRoleEnum","title":"Properties"},{"location":"relational_role/#aliases","text":"reification_role","title":"Aliases"},{"location":"relational_role/#comments","text":"this should only be used on slots that are applicable to class that represent relationships in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes","title":"Comments"},{"location":"relational_role/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"relational_role/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"relational_role/#linkml-source","text":"name: relational_role description: the role a slot on a relationship class plays, for example, the subject, object or predicate roles comments: - this should only be used on slots that are applicable to class that represent relationships - in the context of RDF, this should be used for slots that can be modeled using the RDF reification vocabulary - in the context of property graphs, this should be used on edge classes to indicate which slots represent the input and output nodes from_schema: https://w3id.org/linkml/meta aliases: - reification_role rank: 1000 status: testing domain: slot_definition inherited: true alias: relational_role domain_of: - slot_definition range: relational_role_enum","title":"LinkML Source"},{"location":"relational_role_enum/","text":"Enum: relational_role_enum enumeration of roles a slot on a relationship class can play URI: linkml:relational_role_enum Other properties Permissible Values Text Description Meaning Other Information SUBJECT a slot with this role connects a relationship to its subject/source node rdf:subject OBJECT a slot with this role connects a relationship to its object/target node rdf:object PREDICATE a slot with this role connects a relationship to its predicate/property rdf:predicate NODE a slot with this role connects a symmetric relationship to a node that represents either subject or object node OTHER_ROLE a slot with this role connects a relationship to a node that is not subject/object/predicate","title":"Enum: relational_role_enum"},{"location":"relational_role_enum/#enum-relational_role_enum","text":"enumeration of roles a slot on a relationship class can play URI: linkml:relational_role_enum","title":"Enum: relational_role_enum"},{"location":"relational_role_enum/#other-properties","text":"","title":"Other properties"},{"location":"relational_role_enum/#permissible-values","text":"Text Description Meaning Other Information SUBJECT a slot with this role connects a relationship to its subject/source node rdf:subject OBJECT a slot with this role connects a relationship to its object/target node rdf:object PREDICATE a slot with this role connects a relationship to its predicate/property rdf:predicate NODE a slot with this role connects a symmetric relationship to a node that represents either subject or object node OTHER_ROLE a slot with this role connects a relationship to a node that is not subject/object/predicate","title":"Permissible Values"},{"location":"relationship_types/","text":"Slot: relationship_types A list of relationship types (properties) that are used in a reachability query URI: linkml:relationship_types Applicable Classes Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per... Properties Range: Uriorcurie Multivalued: True Aliases predicates properties Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: relationship_types description: A list of relationship types (properties) that are used in a reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - predicates - properties rank: 1000 domain: reachability_query multivalued: true alias: relationship_types domain_of: - reachability_query range: uriorcurie","title":"Slot: relationship_types"},{"location":"relationship_types/#slot-relationship_types","text":"A list of relationship types (properties) that are used in a reachability query URI: linkml:relationship_types","title":"Slot: relationship_types"},{"location":"relationship_types/#applicable-classes","text":"Name Description ReachabilityQuery A query that is used on an enum expression to dynamically obtain a set of per...","title":"Applicable Classes"},{"location":"relationship_types/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"relationship_types/#aliases","text":"predicates properties","title":"Aliases"},{"location":"relationship_types/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"relationship_types/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"relationship_types/#linkml-source","text":"name: relationship_types description: A list of relationship types (properties) that are used in a reachability query in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - predicates - properties rank: 1000 domain: reachability_query multivalued: true alias: relationship_types domain_of: - reachability_query range: uriorcurie","title":"LinkML Source"},{"location":"repr/","text":"Slot: repr the name of the python object that implements this type definition URI: linkml:repr Applicable Classes Name Description TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: repr description: the name of the python object that implements this type definition in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: type_definition inherited: true alias: repr domain_of: - type_definition range: string","title":"Slot: repr"},{"location":"repr/#slot-repr","text":"the name of the python object that implements this type definition URI: linkml:repr","title":"Slot: repr"},{"location":"repr/#applicable-classes","text":"Name Description TypeDefinition an element that whose instances are atomic scalar values that can be mapped t...","title":"Applicable Classes"},{"location":"repr/#properties","text":"Range: String","title":"Properties"},{"location":"repr/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"repr/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"repr/#linkml-source","text":"name: repr description: the name of the python object that implements this type definition in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 10 domain: type_definition inherited: true alias: repr domain_of: - type_definition range: string","title":"LinkML Source"},{"location":"represents_relationship/","text":"Slot: represents_relationship true if this class represents a relationship rather than an entity URI: linkml:represents_relationship Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Boolean Aliases is_reified Comments in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond in the context of RDF, this should be used when instances of the class are rdf:Statement s in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes See Also rdf:Statement https://patterns.dataincubator.org/book/qualified-relation.html Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: represents_relationship description: true if this class represents a relationship rather than an entity comments: - in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond - in the context of RDF, this should be used when instances of the class are `rdf:Statement`s - in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes from_schema: https://w3id.org/linkml/meta see_also: - rdf:Statement - https://patterns.dataincubator.org/book/qualified-relation.html aliases: - is_reified rank: 1000 status: testing domain: class_definition inherited: true alias: represents_relationship domain_of: - class_definition range: boolean","title":"Slot: represents_relationship"},{"location":"represents_relationship/#slot-represents_relationship","text":"true if this class represents a relationship rather than an entity URI: linkml:represents_relationship","title":"Slot: represents_relationship"},{"location":"represents_relationship/#applicable-classes","text":"Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"represents_relationship/#properties","text":"Range: Boolean","title":"Properties"},{"location":"represents_relationship/#aliases","text":"is_reified","title":"Aliases"},{"location":"represents_relationship/#comments","text":"in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond in the context of RDF, this should be used when instances of the class are rdf:Statement s in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes","title":"Comments"},{"location":"represents_relationship/#see-also","text":"rdf:Statement https://patterns.dataincubator.org/book/qualified-relation.html","title":"See Also"},{"location":"represents_relationship/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"represents_relationship/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"represents_relationship/#linkml-source","text":"name: represents_relationship description: true if this class represents a relationship rather than an entity comments: - in the context of Entity-Relationship (ER) modeling, this is used to state that a class models a relationship between entities, and should be drawn with a diamond - in the context of RDF, this should be used when instances of the class are `rdf:Statement`s - in the context of property graphs, this should be used when a class is used to represent an edge that connects nodes from_schema: https://w3id.org/linkml/meta see_also: - rdf:Statement - https://patterns.dataincubator.org/book/qualified-relation.html aliases: - is_reified rank: 1000 status: testing domain: class_definition inherited: true alias: represents_relationship domain_of: - class_definition range: boolean","title":"LinkML Source"},{"location":"required/","text":"Slot: required true means that the slot must be present in the loaded definition URI: linkml:required Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: required description: true means that the slot must be present in the loaded definition in_subset: - SpecificationSubset - MinimalSubset - BasicSubset - RelationalModelProfile - ObjectOrientedProfile from_schema: https://w3id.org/linkml/meta rank: 8 domain: slot_definition inherited: true alias: required domain_of: - slot_expression range: boolean","title":"Slot: required"},{"location":"required/#slot-required","text":"true means that the slot must be present in the loaded definition URI: linkml:required","title":"Slot: required"},{"location":"required/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"required/#properties","text":"Range: Boolean","title":"Properties"},{"location":"required/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"required/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"required/#linkml-source","text":"name: required description: true means that the slot must be present in the loaded definition in_subset: - 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Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed domain_of: - path_expression range: boolean","title":"Slot: reversed"},{"location":"reversed/#slot-reversed","text":"true if the slot is to be inversed URI: linkml:reversed","title":"Slot: reversed"},{"location":"reversed/#applicable-classes","text":"Name Description PathExpression An expression that describes an abstract path from an object to another throu...","title":"Applicable Classes"},{"location":"reversed/#properties","text":"Range: Boolean","title":"Properties"},{"location":"reversed/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"reversed/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"reversed/#linkml-source","text":"name: reversed description: true if the slot is to be inversed from_schema: https://w3id.org/linkml/meta rank: 1000 alias: reversed domain_of: - path_expression range: boolean","title":"LinkML Source"},{"location":"role/","text":"Slot: role a textual descriptor that indicates the role played by the slot range URI: linkml:role Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Comments the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role domain_of: - slot_definition range: string","title":"Slot: role"},{"location":"role/#slot-role","text":"a textual descriptor that indicates the role played by the slot range URI: linkml:role","title":"Slot: role"},{"location":"role/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"role/#properties","text":"Range: String","title":"Properties"},{"location":"role/#comments","text":"the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class","title":"Comments"},{"location":"role/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"role/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"role/#linkml-source","text":"name: role description: a textual descriptor that indicates the role played by the slot range comments: - the primary use case for this slot is to provide a textual descriptor of a generic slot name when used in the context of a more specific class from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition inherited: true alias: role domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"rules/","text":"Slot: rules the collection of rules that apply to all members of this class URI: sh:rule Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... 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SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... 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setting range: ncname","title":"LinkML Source"},{"location":"setting_value/","text":"Slot: setting_value The value assigned for a setting URI: linkml:setting_value Applicable Classes Name Description Setting assignment of a key to a value Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value domain_of: - setting range: string required: true","title":"Slot: setting_value"},{"location":"setting_value/#slot-setting_value","text":"The value assigned for a setting URI: linkml:setting_value","title":"Slot: setting_value"},{"location":"setting_value/#applicable-classes","text":"Name Description Setting assignment of a key to a value","title":"Applicable Classes"},{"location":"setting_value/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"setting_value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"setting_value/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"setting_value/#linkml-source","text":"name: setting_value description: The value assigned for a setting in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: setting alias: setting_value domain_of: - setting range: string required: true","title":"LinkML Source"},{"location":"settings/","text":"Slot: settings A collection of global variable settings URI: linkml:settings Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: Setting Multivalued: True Comments global variables are used in string interpolation Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: settings description: A collection of global variable settings comments: - global variables are used in string interpolation in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 20 domain: schema_definition multivalued: true alias: settings domain_of: - schema_definition range: setting inlined: true","title":"Slot: settings"},{"location":"settings/#slot-settings","text":"A collection of global variable settings URI: linkml:settings","title":"Slot: settings"},{"location":"settings/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"settings/#properties","text":"Range: Setting Multivalued: True","title":"Properties"},{"location":"settings/#comments","text":"global variables are used in string interpolation","title":"Comments"},{"location":"settings/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"settings/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"settings/#linkml-source","text":"name: settings description: A collection of global variable settings comments: - global variables are used in string interpolation in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 20 domain: schema_definition multivalued: true alias: settings domain_of: - schema_definition range: setting inlined: true","title":"LinkML Source"},{"location":"shared/","text":"Slot: shared If True, then the relationship between the slot domain and range is many to one or many to many URI: linkml:shared Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Aliases inverse functional many to one or many Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: shared description: If True, then the relationship between the slot domain and range is many to one or many to many in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - inverse functional - many to one or many rank: 1000 domain: slot_definition inherited: true alias: shared domain_of: - slot_definition range: boolean","title":"Slot: shared"},{"location":"shared/#slot-shared","text":"If True, then the relationship between the slot domain and range is many to one or many to many URI: linkml:shared","title":"Slot: shared"},{"location":"shared/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"shared/#properties","text":"Range: Boolean","title":"Properties"},{"location":"shared/#aliases","text":"inverse functional many to one or many","title":"Aliases"},{"location":"shared/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"shared/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"shared/#linkml-source","text":"name: shared description: If True, then the relationship between the slot domain and range is many to one or many to many in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta aliases: - inverse functional - many to one or many rank: 1000 domain: slot_definition inherited: true alias: shared domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"singular_name/","text":"Slot: singular_name a name that is used in the singular form URI: skos:altLabel Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: singular_name description: a name that is used in the singular form in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: skos:altLabel alias: singular_name domain_of: - slot_definition range: string","title":"Slot: singular_name"},{"location":"singular_name/#slot-singular_name","text":"a name that is used in the singular form URI: skos:altLabel","title":"Slot: singular_name"},{"location":"singular_name/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"singular_name/#properties","text":"Range: String","title":"Properties"},{"location":"singular_name/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"singular_name/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"singular_name/#linkml-source","text":"name: singular_name description: a name that is used in the singular form in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: skos:altLabel alias: singular_name domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"slot_conditions/","text":"Slot: slot_conditions expresses constraints on a group of slots for a class expression URI: linkml:slot_conditions Applicable Classes Name Description ClassExpression A boolean expression that can be used to dynamically determine membership of ... 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For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. URI: linkml:slot_definition_apply_to Domain and Range SlotDefinition \u2192 0..* SlotDefinition Parents is_a: apply_to Children Used by SlotDefinition","title":"Slot: apply_to"},{"location":"slot_definition_apply_to/#slot-apply_to","text":"Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. URI: linkml:slot_definition_apply_to","title":"Slot: apply_to"},{"location":"slot_definition_apply_to/#domain-and-range","text":"SlotDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_apply_to/#parents","text":"is_a: apply_to","title":"Parents"},{"location":"slot_definition_apply_to/#children","text":"","title":"Children"},{"location":"slot_definition_apply_to/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definition_disjoint_with/","text":"Slot: disjoint_with Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances URI: linkml:slot_definition_disjoint_with Domain and Range SlotDefinition \u2192 0..* SlotDefinition Parents is_a: disjoint_with Children Used by SlotDefinition Other properties In Subsets: SpecificationSubset","title":"Slot: disjoint_with"},{"location":"slot_definition_disjoint_with/#slot-disjoint_with","text":"Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances URI: linkml:slot_definition_disjoint_with","title":"Slot: disjoint_with"},{"location":"slot_definition_disjoint_with/#domain-and-range","text":"SlotDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_disjoint_with/#parents","text":"is_a: disjoint_with","title":"Parents"},{"location":"slot_definition_disjoint_with/#children","text":"","title":"Children"},{"location":"slot_definition_disjoint_with/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definition_disjoint_with/#other-properties","text":"In Subsets: SpecificationSubset","title":"Other properties"},{"location":"slot_definition_is_a/","text":"Slot: is_a A primary parent slot from which inheritable metaslots are propagated URI: linkml:slot_definition_is_a Domain and Range SlotDefinition \u2192 0..1 SlotDefinition Parents is_a: is_a Children Used by SlotDefinition Other properties In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile","title":"Slot: is_a"},{"location":"slot_definition_is_a/#slot-is_a","text":"A primary parent slot from which inheritable metaslots are propagated URI: linkml:slot_definition_is_a","title":"Slot: is_a"},{"location":"slot_definition_is_a/#domain-and-range","text":"SlotDefinition \u2192 0..1 SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_is_a/#parents","text":"is_a: is_a","title":"Parents"},{"location":"slot_definition_is_a/#children","text":"","title":"Children"},{"location":"slot_definition_is_a/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definition_is_a/#other-properties","text":"In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile","title":"Other properties"},{"location":"slot_definition_mixins/","text":"Slot: mixins A collection of secondary parent mixin slots from which inheritable metaslots are propagated URI: linkml:slot_definition_mixins Domain and Range SlotDefinition \u2192 0..* SlotDefinition Parents is_a: mixins Children Used by SlotDefinition Other properties Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile See also: https://en.wikipedia.org/wiki/Mixin","title":"Slot: mixins"},{"location":"slot_definition_mixins/#slot-mixins","text":"A collection of secondary parent mixin slots from which inheritable metaslots are propagated URI: linkml:slot_definition_mixins","title":"Slot: mixins"},{"location":"slot_definition_mixins/#domain-and-range","text":"SlotDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_mixins/#parents","text":"is_a: mixins","title":"Parents"},{"location":"slot_definition_mixins/#children","text":"","title":"Children"},{"location":"slot_definition_mixins/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definition_mixins/#other-properties","text":"Aliases: traits Comments: mixins act in the same way as parents (is_a). They allow a model to have a primary strict hierachy, while keeping the benefits of multiple inheritance In Subsets: SpecificationSubset BasicSubset ObjectOrientedProfile OwlProfile See also: https://en.wikipedia.org/wiki/Mixin","title":"Other properties"},{"location":"slot_definition_union_of/","text":"Slot: union_of indicates that the domain element consists exactly of the members of the element in the range. URI: linkml:slot_definition_union_of Domain and Range SlotDefinition \u2192 0..* SlotDefinition Parents is_a: union_of Children Used by SlotDefinition Other properties In Subsets: SpecificationSubset OwlProfile","title":"Slot: union_of"},{"location":"slot_definition_union_of/#slot-union_of","text":"indicates that the domain element consists exactly of the members of the element in the range. URI: linkml:slot_definition_union_of","title":"Slot: union_of"},{"location":"slot_definition_union_of/#domain-and-range","text":"SlotDefinition \u2192 0..* SlotDefinition","title":"Domain and Range"},{"location":"slot_definition_union_of/#parents","text":"is_a: union_of","title":"Parents"},{"location":"slot_definition_union_of/#children","text":"","title":"Children"},{"location":"slot_definition_union_of/#used-by","text":"SlotDefinition","title":"Used by"},{"location":"slot_definition_union_of/#other-properties","text":"In Subsets: SpecificationSubset OwlProfile","title":"Other properties"},{"location":"slot_definitions/","text":"Slot: slot_definitions An index to the collection of all slot definitions in the schema URI: linkml:slot_definitions Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: SlotDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: 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SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Aliases workflow status Examples Value bibo:draft See Also https://www.hl7.org/fhir/valueset-publication-status.html https://www.hl7.org/fhir/versions.html#std-process Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status domain_of: - definition range: uriorcurie","title":"Slot: status"},{"location":"status/#slot-status","text":"status of the element URI: bibo:status","title":"Slot: status"},{"location":"status/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"status/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"status/#aliases","text":"workflow status","title":"Aliases"},{"location":"status/#examples","text":"Value bibo:draft","title":"Examples"},{"location":"status/#see-also","text":"https://www.hl7.org/fhir/valueset-publication-status.html https://www.hl7.org/fhir/versions.html#std-process","title":"See Also"},{"location":"status/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"status/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"status/#linkml-source","text":"name: status description: status of the element examples: - value: bibo:draft in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta see_also: - https://www.hl7.org/fhir/valueset-publication-status.html - https://www.hl7.org/fhir/versions.html#std-process aliases: - workflow status rank: 1000 domain: element slot_uri: bibo:status alias: status domain_of: - definition range: uriorcurie","title":"LinkML Source"},{"location":"string_serialization/","text":"Slot: string_serialization Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: String See Also https://github.com/linkml/issues/128 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization domain_of: - definition range: string","title":"Slot: string_serialization"},{"location":"string_serialization/#slot-string_serialization","text":"Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm URI: linkml:string_serialization","title":"Slot: string_serialization"},{"location":"string_serialization/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"string_serialization/#properties","text":"Range: String","title":"Properties"},{"location":"string_serialization/#see-also","text":"https://github.com/linkml/issues/128","title":"See Also"},{"location":"string_serialization/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"string_serialization/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"string_serialization/#linkml-source","text":"name: string_serialization description: 'Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots. We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion. Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm' in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta see_also: - https://github.com/linkml/issues/128 rank: 1000 domain: definition inherited: false alias: string_serialization domain_of: - definition range: string","title":"LinkML Source"},{"location":"structured_alias_categories/","text":"Slot: categories The category or categories of an alias. This can be drawn from any relevant vocabulary URI: linkml:structured_alias_categories Domain and Range StructuredAlias \u2192 0..* Uriorcurie Parents is_a: categories Children Used by StructuredAlias Other properties Mappings: dcterms:subject Examples: Example(value='https://w3id.org/mod#acronym', description='An acronym') In Subsets: BasicSubset","title":"Slot: categories"},{"location":"structured_alias_categories/#slot-categories","text":"The category or categories of an alias. This can be drawn from any relevant vocabulary URI: linkml:structured_alias_categories","title":"Slot: categories"},{"location":"structured_alias_categories/#domain-and-range","text":"StructuredAlias \u2192 0..* Uriorcurie","title":"Domain and Range"},{"location":"structured_alias_categories/#parents","text":"is_a: categories","title":"Parents"},{"location":"structured_alias_categories/#children","text":"","title":"Children"},{"location":"structured_alias_categories/#used-by","text":"StructuredAlias","title":"Used by"},{"location":"structured_alias_categories/#other-properties","text":"Mappings: dcterms:subject Examples: Example(value='https://w3id.org/mod#acronym', description='An acronym') In Subsets: BasicSubset","title":"Other properties"},{"location":"structured_aliases/","text":"Slot: structured_aliases A list of structured_alias objects. URI: skosxl:altLabel Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: StructuredAlias Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases domain_of: - common_metadata range: structured_alias inlined: true","title":"Slot: structured_aliases"},{"location":"structured_aliases/#slot-structured_aliases","text":"A list of structured_alias objects. URI: skosxl:altLabel","title":"Slot: structured_aliases"},{"location":"structured_aliases/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class","title":"Applicable Classes"},{"location":"structured_aliases/#properties","text":"Range: StructuredAlias Multivalued: True","title":"Properties"},{"location":"structured_aliases/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"structured_aliases/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"structured_aliases/#linkml-source","text":"name: structured_aliases description: A list of structured_alias objects. from_schema: https://w3id.org/linkml/meta rank: 1000 slot_uri: skosxl:altLabel multivalued: true alias: structured_aliases domain_of: - common_metadata range: structured_alias inlined: true","title":"LinkML Source"},{"location":"structured_imports/","text":"Slot: structured_imports other schemas that are included in this schema URI: linkml:structured_imports Properties Range: ImportExpression Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: structured_imports description: other schemas that are included in this schema from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: structured_imports range: import_expression","title":"Slot: structured_imports"},{"location":"structured_imports/#slot-structured_imports","text":"other schemas that are included in this schema URI: linkml:structured_imports","title":"Slot: structured_imports"},{"location":"structured_imports/#properties","text":"Range: ImportExpression Multivalued: True","title":"Properties"},{"location":"structured_imports/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"structured_imports/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"structured_imports/#linkml-source","text":"name: structured_imports description: other schemas that are included in this schema from_schema: https://w3id.org/linkml/meta rank: 1000 domain: schema_definition multivalued: true alias: structured_imports range: import_expression","title":"LinkML Source"},{"location":"structured_pattern/","text":"Slot: structured_pattern the string value of the slot must conform to the regular expression in the pattern expression URI: linkml:structured_pattern Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: PatternExpression Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern domain_of: - type_expression - slot_expression range: pattern_expression","title":"Slot: structured_pattern"},{"location":"structured_pattern/#slot-structured_pattern","text":"the string value of the slot must conform to the regular expression in the pattern expression URI: linkml:structured_pattern","title":"Slot: structured_pattern"},{"location":"structured_pattern/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"structured_pattern/#properties","text":"Range: PatternExpression","title":"Properties"},{"location":"structured_pattern/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"structured_pattern/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"structured_pattern/#linkml-source","text":"name: structured_pattern description: the string value of the slot must conform to the regular expression in the pattern expression in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition inherited: true alias: structured_pattern domain_of: - type_expression - slot_expression range: pattern_expression","title":"LinkML Source"},{"location":"subclass_of/","text":"Slot: subclass_of rdfs:subClassOf to be emitted in OWL generation URI: rdfs:subClassOf Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of domain_of: - class_definition range: uriorcurie","title":"Slot: subclass_of"},{"location":"subclass_of/#slot-subclass_of","text":"rdfs:subClassOf to be emitted in OWL generation URI: rdfs:subClassOf","title":"Slot: subclass_of"},{"location":"subclass_of/#applicable-classes","text":"Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"subclass_of/#properties","text":"Range: Uriorcurie","title":"Properties"},{"location":"subclass_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"subclass_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"subclass_of/#linkml-source","text":"name: subclass_of description: rdfs:subClassOf to be emitted in OWL generation deprecated: Use is_a instead from_schema: https://w3id.org/linkml/meta rank: 1000 domain: class_definition slot_uri: rdfs:subClassOf alias: subclass_of domain_of: - class_definition range: uriorcurie","title":"LinkML Source"},{"location":"subproperty_of/","text":"Slot: subproperty_of Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: rdfs:subPropertyOf Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: SlotDefinition Examples Value RO:HOM0000001 Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of domain_of: - slot_definition range: slot_definition","title":"Slot: subproperty_of"},{"location":"subproperty_of/#slot-subproperty_of","text":"Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: rdfs:subPropertyOf","title":"Slot: subproperty_of"},{"location":"subproperty_of/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"subproperty_of/#properties","text":"Range: SlotDefinition","title":"Properties"},{"location":"subproperty_of/#examples","text":"Value RO:HOM0000001","title":"Examples"},{"location":"subproperty_of/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"subproperty_of/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"subproperty_of/#linkml-source","text":"name: subproperty_of description: 'Ontology property which this slot is a subproperty of. Note: setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' examples: - value: RO:HOM0000001 description: this is the RO term for \"in homology relationship with\", and used as a value of subproperty of this means that any ontological child (related to RO:HOM0000001 via an is_a relationship), is a valid value for the slot that declares this with the subproperty_of tag. This differs from the 'values_from' meta model component in that 'values_from' requires the id of a value set (said another way, if an entire ontology had a curie/identifier that was the identifier for the entire ontology, then that identifier would be used in 'values_from.') from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition slot_uri: rdfs:subPropertyOf alias: subproperty_of domain_of: - slot_definition range: slot_definition","title":"LinkML Source"},{"location":"subsets/","text":"Slot: subsets An index to the collection of all subset definitions in the schema URI: linkml:subsets Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: SubsetDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets domain_of: - schema_definition range: subset_definition inlined: true","title":"Slot: subsets"},{"location":"subsets/#slot-subsets","text":"An index to the collection of all subset definitions in the schema URI: linkml:subsets","title":"Slot: subsets"},{"location":"subsets/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"subsets/#properties","text":"Range: SubsetDefinition Multivalued: True","title":"Properties"},{"location":"subsets/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"subsets/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"subsets/#linkml-source","text":"name: subsets description: An index to the collection of all subset definitions in the schema in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - OIO:hasSubset rank: 8 domain: schema_definition multivalued: true alias: subsets domain_of: - schema_definition range: subset_definition inlined: true","title":"LinkML Source"},{"location":"symbol/","text":"Slot: symbol name of the unit encoded as a symbol URI: qudt:symbol Applicable Classes Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos... Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: symbol description: name of the unit encoded as a symbol from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:symbol alias: symbol domain_of: - UnitOfMeasure range: string","title":"Slot: symbol"},{"location":"symbol/#slot-symbol","text":"name of the unit encoded as a symbol URI: qudt:symbol","title":"Slot: symbol"},{"location":"symbol/#applicable-classes","text":"Name Description UnitOfMeasure A unit of measure, or unit, is a particular quantity value that has been chos...","title":"Applicable Classes"},{"location":"symbol/#properties","text":"Range: String","title":"Properties"},{"location":"symbol/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"symbol/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"symbol/#linkml-source","text":"name: symbol description: name of the unit encoded as a symbol from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:symbol alias: symbol domain_of: - UnitOfMeasure range: string","title":"LinkML Source"},{"location":"symmetric/","text":"Slot: symmetric If s is symmetric, and i.s=v, then v.s=i URI: linkml:symmetric Inheritance relational_logical_characteristic symmetric Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: Boolean Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric domain_of: - slot_definition range: boolean","title":"Slot: symmetric"},{"location":"symmetric/#slot-symmetric","text":"If s is symmetric, and i.s=v, then v.s=i URI: linkml:symmetric","title":"Slot: symmetric"},{"location":"symmetric/#inheritance","text":"relational_logical_characteristic symmetric","title":"Inheritance"},{"location":"symmetric/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"symmetric/#properties","text":"Range: Boolean","title":"Properties"},{"location":"symmetric/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"symmetric/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"symmetric/#linkml-source","text":"name: symmetric description: If s is symmetric, and i.s=v, then v.s=i in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta close_mappings: - owl:SymmetricProperty rank: 1000 is_a: relational_logical_characteristic domain: slot_definition alias: symmetric domain_of: - slot_definition range: boolean","title":"LinkML Source"},{"location":"syntax/","text":"Slot: syntax the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. URI: linkml:syntax Applicable Classes Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax domain_of: - pattern_expression range: string","title":"Slot: syntax"},{"location":"syntax/#slot-syntax","text":"the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. URI: linkml:syntax","title":"Slot: syntax"},{"location":"syntax/#applicable-classes","text":"Name Description PatternExpression a regular expression pattern used to evaluate conformance of a string","title":"Applicable Classes"},{"location":"syntax/#properties","text":"Range: String","title":"Properties"},{"location":"syntax/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"syntax/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"syntax/#linkml-source","text":"name: syntax description: the string value of the slot must conform to this regular expression expressed in the string. May be interpolated. in_subset: - SpecificationSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: pattern_expression inherited: true alias: syntax domain_of: - pattern_expression range: string","title":"LinkML Source"},{"location":"text/","text":"Slot: text URI: linkml:text Applicable Classes Name Description PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... Properties Range: String Aliases value Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text domain_of: - permissible_value range: string","title":"Slot: text"},{"location":"text/#slot-text","text":"URI: linkml:text","title":"Slot: text"},{"location":"text/#applicable-classes","text":"Name Description PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ...","title":"Applicable Classes"},{"location":"text/#properties","text":"Range: String","title":"Properties"},{"location":"text/#aliases","text":"value","title":"Aliases"},{"location":"text/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"text/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"text/#linkml-source","text":"name: text in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - value close_mappings: - skos:notation rank: 21 domain: permissible_value identifier: true alias: text domain_of: - permissible_value range: string","title":"LinkML Source"},{"location":"title/","text":"Slot: title the official title of the element URI: dcterms:title Applicable Classes Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... SubsetDefinition an element that can be used to group other metamodel elements Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... StructuredAlias object that contains meta data about a synonym or alias including where it ca... AnonymousExpression PathExpression An expression that describes an abstract path from an object to another throu... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances AnonymousClassExpression ClassDefinition an element whose instances are complex objects that may have slot-value assig... ClassRule A rule that applies to instances of a class PatternExpression a regular expression pattern used to evaluate conformance of a string ImportExpression an expression describing an import PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... UniqueKey a collection of slots whose values uniquely identify an instance of a class Properties Range: String Aliases long name Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: title description: the official title of the element in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta aliases: - long name rank: 3 domain: element slot_uri: dcterms:title alias: title domain_of: - common_metadata range: string","title":"Slot: title"},{"location":"title/#slot-title","text":"the official title of the element URI: dcterms:title","title":"Slot: title"},{"location":"title/#applicable-classes","text":"Name Description CommonMetadata Generic metadata shared across definitions Element a named element in the model SchemaDefinition a collection of subset, type, slot and class definitions TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... 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URI: linkml:type_definition_union_of","title":"Slot: union_of"},{"location":"type_definition_union_of/#domain-and-range","text":"TypeDefinition \u2192 0..* TypeDefinition","title":"Domain and Range"},{"location":"type_definition_union_of/#parents","text":"is_a: union_of","title":"Parents"},{"location":"type_definition_union_of/#children","text":"","title":"Children"},{"location":"type_definition_union_of/#used-by","text":"TypeDefinition","title":"Used by"},{"location":"type_definition_union_of/#other-properties","text":"In Subsets: SpecificationSubset OwlProfile","title":"Other properties"},{"location":"type_expression_all_of/","text":"Slot: all_of holds if all of the expressions hold URI: linkml:type_expression_all_of Domain and Range TypeExpression \u2192 0..* AnonymousTypeExpression Parents is_a: all_of Children Used by AnonymousTypeExpression TypeDefinition TypeExpression Other properties In Subsets: SpecificationSubset Exact Mappings: sh:and","title":"Slot: 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expressions hold URI: linkml:type_expression_exactly_one_of Domain and Range TypeExpression \u2192 0..* AnonymousTypeExpression Parents is_a: exactly_one_of Children Used by AnonymousTypeExpression TypeDefinition TypeExpression Other properties In Subsets: SpecificationSubset Exact Mappings: sh:xone","title":"Slot: exactly_one_of"},{"location":"type_expression_exactly_one_of/#slot-exactly_one_of","text":"holds if only one of the expressions hold URI: linkml:type_expression_exactly_one_of","title":"Slot: exactly_one_of"},{"location":"type_expression_exactly_one_of/#domain-and-range","text":"TypeExpression \u2192 0..* AnonymousTypeExpression","title":"Domain and Range"},{"location":"type_expression_exactly_one_of/#parents","text":"is_a: exactly_one_of","title":"Parents"},{"location":"type_expression_exactly_one_of/#children","text":"","title":"Children"},{"location":"type_expression_exactly_one_of/#used-by","text":"AnonymousTypeExpression TypeDefinition TypeExpression","title":"Used 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Properties Range: TypeDefinition Comments the target type definition of the typeof slot is referred to as the \"parent type\" the type definition containing the typeof slot is referred to as the \"child type\" type definitions without a typeof slot are referred to as a \"root type\" Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: typeof description: Names a parent type comments: - the target type definition of the typeof slot is referred to as the \"parent type\" - the type definition containing the typeof slot is referred to as the \"child type\" - type definitions without a typeof slot are referred to as a \"root type\" in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 7 domain: type_definition alias: typeof domain_of: - type_definition range: type_definition","title":"Slot: typeof"},{"location":"typeof/#slot-typeof","text":"Names a parent type URI: linkml:typeof","title":"Slot: typeof"},{"location":"typeof/#applicable-classes","text":"Name Description TypeDefinition an element that whose instances are atomic scalar values that can be mapped t...","title":"Applicable Classes"},{"location":"typeof/#properties","text":"Range: TypeDefinition","title":"Properties"},{"location":"typeof/#comments","text":"the target type definition of the typeof slot is referred to as the \"parent type\" the type definition containing the typeof slot is referred to as the \"child type\" type definitions without a typeof slot are referred to as a \"root type\"","title":"Comments"},{"location":"typeof/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"typeof/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"typeof/#linkml-source","text":"name: typeof description: Names a parent type comments: - the target type definition of the typeof slot is referred to as the \"parent type\" - the type definition containing the typeof slot is referred to as the \"child type\" - type definitions without a typeof slot are referred to as a \"root type\" in_subset: - SpecificationSubset - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 7 domain: type_definition alias: typeof domain_of: - type_definition range: type_definition","title":"LinkML Source"},{"location":"types/","text":"Slot: types An index to the collection of all type definitions in the schema URI: linkml:types Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: TypeDefinition Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: types description: An index to the collection of all type definitions in the schema in_subset: - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 6 domain: schema_definition multivalued: true alias: types domain_of: - schema_definition range: type_definition inlined: true","title":"Slot: types"},{"location":"types/#slot-types","text":"An index to the collection of all type definitions in the schema URI: linkml:types","title":"Slot: types"},{"location":"types/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"types/#properties","text":"Range: TypeDefinition Multivalued: True","title":"Properties"},{"location":"types/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"types/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"types/#linkml-source","text":"name: types description: An index to the collection of all type definitions in the schema in_subset: - BasicSubset - ObjectOrientedProfile - OwlProfile from_schema: https://w3id.org/linkml/meta rank: 6 domain: schema_definition multivalued: true alias: types domain_of: - schema_definition range: type_definition inlined: true","title":"LinkML Source"},{"location":"ucum_code/","text":"Slot: ucum_code associates a QUDT unit with its UCUM code (case-sensitive). 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Unique keys may be singular or compound. URI: linkml:unique_keys Applicable Classes Name Description ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: UniqueKey Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: unique_keys description: A collection of unique keys for this class. Unique keys may be singular or compound. in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta exact_mappings: - owl:hasKey rank: 1000 domain: class_definition multivalued: true alias: unique_keys domain_of: - class_definition range: unique_key inlined: true","title":"Slot: unique_keys"},{"location":"unique_keys/#slot-unique_keys","text":"A collection of unique keys for this class. Unique keys may be singular or compound. 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Unique keys may be singular or compound. in_subset: - SpecificationSubset - BasicSubset - RelationalModelProfile from_schema: https://w3id.org/linkml/meta exact_mappings: - owl:hasKey rank: 1000 domain: class_definition multivalued: true alias: unique_keys domain_of: - class_definition range: unique_key inlined: true","title":"LinkML Source"},{"location":"unit/","text":"Slot: unit an encoding of a unit URI: qudt:unit Applicable Classes Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: UnitOfMeasure Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/units LinkML Source name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure","title":"Slot: unit"},{"location":"unit/#slot-unit","text":"an encoding of a unit URI: qudt:unit","title":"Slot: unit"},{"location":"unit/#applicable-classes","text":"Name Description TypeExpression SlotExpression an expression that constrains the range of values a slot can take PermissibleValue a permissible value, accompanied by intended text and an optional mapping to ... AnonymousTypeExpression TypeDefinition an element that whose instances are atomic scalar values that can be mapped t... AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"unit/#properties","text":"Range: UnitOfMeasure","title":"Properties"},{"location":"unit/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"unit/#schema-source","text":"from schema: https://w3id.org/linkml/units","title":"Schema Source"},{"location":"unit/#linkml-source","text":"name: unit description: an encoding of a unit from_schema: https://w3id.org/linkml/units rank: 1000 slot_uri: qudt:unit alias: unit domain_of: - type_expression - slot_expression - permissible_value range: UnitOfMeasure","title":"LinkML Source"},{"location":"units/","text":"units Units datamodel URI: https://w3id.org/linkml/units","title":"units"},{"location":"units/#units","text":"Units datamodel URI: https://w3id.org/linkml/units","title":"units"},{"location":"usage_slot_name/","text":"Slot: usage_slot_name The name of the slot referenced in the slot_usage URI: linkml:usage_slot_name Applicable Classes Name Description SlotDefinition an element that describes how instances are related to other instances Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name domain_of: - slot_definition range: string","title":"Slot: usage_slot_name"},{"location":"usage_slot_name/#slot-usage_slot_name","text":"The name of the slot referenced in the slot_usage URI: linkml:usage_slot_name","title":"Slot: usage_slot_name"},{"location":"usage_slot_name/#applicable-classes","text":"Name Description SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"usage_slot_name/#properties","text":"Range: String","title":"Properties"},{"location":"usage_slot_name/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"usage_slot_name/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"usage_slot_name/#linkml-source","text":"name: usage_slot_name description: The name of the slot referenced in the slot_usage from_schema: https://w3id.org/linkml/meta rank: 1000 domain: slot_definition readonly: filled in by the loader alias: usage_slot_name domain_of: - slot_definition range: string","title":"LinkML Source"},{"location":"value/","text":"Slot: value example value URI: skos:example Applicable Classes Name Description Example usage example and description Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value description: example value in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example slot_uri: skos:example alias: value domain_of: - example range: string","title":"Slot: value"},{"location":"value/#slot-value","text":"example value URI: skos:example","title":"Slot: value"},{"location":"value/#applicable-classes","text":"Name Description Example usage example and description","title":"Applicable Classes"},{"location":"value/#properties","text":"Range: String","title":"Properties"},{"location":"value/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value/#linkml-source","text":"name: value description: example value in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example slot_uri: skos:example alias: value domain_of: - example range: string","title":"LinkML Source"},{"location":"value_description/","text":"Slot: value_description description of what the value is doing URI: linkml:value_description Applicable Classes Name Description Example usage example and description Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value_description description: description of what the value is doing in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example alias: description domain_of: - example range: string","title":"Slot: value_description"},{"location":"value_description/#slot-value_description","text":"description of what the value is doing URI: linkml:value_description","title":"Slot: value_description"},{"location":"value_description/#applicable-classes","text":"Name Description Example usage example and description","title":"Applicable Classes"},{"location":"value_description/#properties","text":"Range: String","title":"Properties"},{"location":"value_description/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value_description/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value_description/#linkml-source","text":"name: value_description description: description of what the value is doing in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta rank: 1000 domain: example alias: description domain_of: - example range: string","title":"LinkML Source"},{"location":"value_presence/","text":"Slot: value_presence if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) URI: linkml:value_presence Inheritance list_value_specification_constant value_presence Applicable Classes Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances Properties Range: PresenceEnum Comments if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence domain_of: - slot_expression range: presence_enum","title":"Slot: value_presence"},{"location":"value_presence/#slot-value_presence","text":"if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) URI: linkml:value_presence","title":"Slot: value_presence"},{"location":"value_presence/#inheritance","text":"list_value_specification_constant value_presence","title":"Inheritance"},{"location":"value_presence/#applicable-classes","text":"Name Description SlotExpression an expression that constrains the range of values a slot can take AnonymousSlotExpression SlotDefinition an element that describes how instances are related to other instances","title":"Applicable Classes"},{"location":"value_presence/#properties","text":"Range: PresenceEnum","title":"Properties"},{"location":"value_presence/#comments","text":"if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present","title":"Comments"},{"location":"value_presence/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value_presence/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value_presence/#linkml-source","text":"name: value_presence description: if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) comments: - if set to true this has the same effect as required=true. In contrast, required=false allows a value to be present from_schema: https://w3id.org/linkml/meta rank: 1000 is_a: list_value_specification_constant status: unstable domain: slot_definition inherited: true alias: value_presence domain_of: - slot_expression range: presence_enum","title":"LinkML Source"},{"location":"value_specification_constant/","text":"Slot: value_specification_constant Grouping for metamodel slots that constrain the a slot value to equal a specified constant URI: linkml:value_specification_constant Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: value_specification_constant description: Grouping for metamodel slots that constrain the a slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: value_specification_constant range: string","title":"Slot: value_specification_constant"},{"location":"value_specification_constant/#slot-value_specification_constant","text":"Grouping for metamodel slots that constrain the a slot value to equal a specified constant URI: linkml:value_specification_constant","title":"Slot: value_specification_constant"},{"location":"value_specification_constant/#properties","text":"Range: String","title":"Properties"},{"location":"value_specification_constant/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"value_specification_constant/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"value_specification_constant/#linkml-source","text":"name: value_specification_constant description: Grouping for metamodel slots that constrain the a slot value to equal a specified constant from_schema: https://w3id.org/linkml/meta rank: 1000 abstract: true status: testing alias: value_specification_constant range: string","title":"LinkML Source"},{"location":"values_from/","text":"Slot: values_from The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than 'subproperty_of' in that 'subproperty_of' is intended to be a single ontology term while 'values_from' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: linkml:values_from Applicable Classes Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig... Properties Range: Uriorcurie Multivalued: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from domain_of: - definition range: uriorcurie","title":"Slot: values_from"},{"location":"values_from/#slot-values_from","text":"The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than 'subproperty_of' in that 'subproperty_of' is intended to be a single ontology term while 'values_from' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model. URI: linkml:values_from","title":"Slot: values_from"},{"location":"values_from/#applicable-classes","text":"Name Description Definition abstract base class for core metaclasses EnumDefinition an element whose instances must be drawn from a specified set of permissible ... SlotDefinition an element that describes how instances are related to other instances ClassDefinition an element whose instances are complex objects that may have slot-value assig...","title":"Applicable Classes"},{"location":"values_from/#properties","text":"Range: Uriorcurie Multivalued: True","title":"Properties"},{"location":"values_from/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"values_from/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"values_from/#linkml-source","text":"name: values_from description: 'The identifier of a \"value set\" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than ''subproperty_of'' in that ''subproperty_of'' is intended to be a single ontology term while ''values_from'' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hiearchy into an enumerated list of possible values in every serialization of the model.' from_schema: https://w3id.org/linkml/meta rank: 1000 domain: definition multivalued: true alias: values_from domain_of: - definition range: uriorcurie","title":"LinkML Source"},{"location":"version/","text":"Slot: version particular version of schema URI: pav:version Applicable Classes Name Description SchemaDefinition a collection of subset, type, slot and class definitions Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/linkml/meta LinkML Source name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version domain_of: - schema_definition range: string","title":"Slot: version"},{"location":"version/#slot-version","text":"particular version of schema URI: pav:version","title":"Slot: version"},{"location":"version/#applicable-classes","text":"Name Description SchemaDefinition a collection of subset, type, slot and class definitions","title":"Applicable Classes"},{"location":"version/#properties","text":"Range: String","title":"Properties"},{"location":"version/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"version/#schema-source","text":"from schema: https://w3id.org/linkml/meta","title":"Schema Source"},{"location":"version/#linkml-source","text":"name: version description: particular version of schema in_subset: - BasicSubset from_schema: https://w3id.org/linkml/meta exact_mappings: - schema:schemaVersion rank: 1000 domain: schema_definition slot_uri: pav:version alias: version domain_of: - schema_definition range: string","title":"LinkML Source"},{"location":"specification/","text":"LinkML Specification Table of Contents Preamble Introduction Instances Schemas Derived Schemas Validation Mapping","title":"Index"},{"location":"specification/#linkml-specification","text":"","title":"LinkML Specification"},{"location":"specification/#table-of-contents","text":"Preamble Introduction Instances Schemas Derived Schemas Validation Mapping","title":"Table of Contents"},{"location":"specification/00preamble/","text":"Linked Data Modeling Language: Specification Authors: Chris Mungall, Lawrence Berkeley National Laboratory Harold Solbrig, Johns Hopkins University Abstract The Linked Data Modeling Language (LinkML) is a language for working with and specifying the structure of instance data. A LinkML schema (aka model or datamodel) describes the structure of instance data, and specifies valid instances and rules for performing inference over instance data. This document defines the structure of instance data using a functional-style syntax, and defines the structure of a particular class of instance data, a LinkML schema , and the rules for these schemas. Notes More information about LinkML can be found on the LinkML site , which includes introductory material and tutorials . It also includes a reference implementation and set of tools for working with LinkML schemas and data. The specification provided here is intended to be independent of any particular tool or implementation. Status of this specification This is a draft specification open from comments to all. License This specification, like all parts of LinkML are in the public domain under a Creative Commons Zero license waiver.","title":"Preface"},{"location":"specification/00preamble/#linked-data-modeling-language-specification","text":"Authors: Chris Mungall, Lawrence Berkeley National Laboratory Harold Solbrig, Johns Hopkins University","title":"Linked Data Modeling Language: Specification"},{"location":"specification/00preamble/#abstract","text":"The Linked Data Modeling Language (LinkML) is a language for working with and specifying the structure of instance data. A LinkML schema (aka model or datamodel) describes the structure of instance data, and specifies valid instances and rules for performing inference over instance data. This document defines the structure of instance data using a functional-style syntax, and defines the structure of a particular class of instance data, a LinkML schema , and the rules for these schemas.","title":"Abstract"},{"location":"specification/00preamble/#notes","text":"More information about LinkML can be found on the LinkML site , which includes introductory material and tutorials . It also includes a reference implementation and set of tools for working with LinkML schemas and data. The specification provided here is intended to be independent of any particular tool or implementation.","title":"Notes"},{"location":"specification/00preamble/#status-of-this-specification","text":"This is a draft specification open from comments to all.","title":"Status of this specification"},{"location":"specification/00preamble/#license","text":"This specification, like all parts of LinkML are in the public domain under a Creative Commons Zero license waiver.","title":"License"},{"location":"specification/01introduction/","text":"Introduction This document is a functional draft specification for the Linked Data Modeling Language (LinkML). LinkML is a data modeling language for describing the structure of a collection of instances , where instances are tree-like object-oriented structures. Instances are pieces of information that represent things of interest in a particular domain, such as individual people, biological samples, places, events, or abstract entities. Instances are either primitive types such as numbers or strings, or objects that are typed using classes from a LinkML schema . Classes are categories or groupings of things in the domain of interest; for example, \"Person\", \"Medical History\", \"Data file\", or \"Country\". Instances can be inter-related by assigning slot values ; for example, an instance of a Person may have values for slots \"name\" or \"country of birth\". LinkML schemas also specify rules for determining if instances conform to the schema, and for inference adding additional implicit slot values. LinkML is independent of any programming language, database technology, and is independent of any concrete form for serializing instances of schemas. Mappings are provided for serializing instances as JSON, YAML, RDF, flat tables, or relational models, or for mapping to programming language structures. However, the structure and semantics of LinkML are independent from any of these. Schemas are typically expressed using the YAML serialization, but this specification is defined independent of that particular serialization. LinkML is self-describing, and any LinkML schema is itself a collection instances that instantiates elements in a special schema called the LinkML metamodel . Audience This document is intended for LinkML tool and framework implementors, and is intended to provide formal clarity about the structure and semantics of LinkML. For a more lightweight introduction, consult the material on the main LinkML site , including the LinkML tutorial. Conventions and terminology The key words \"MUST\", \"MUST NOT\", \"REQUIRED\", \"SHALL\", \"SHALL NOT\", \"SHOULD\", \"SHOULD NOT\", \"RECOMMENDED\", \"MAY\", and \"OPTIONAL\" in this document are to be interpreted as described in RFC 2119 . BNF Grammars in this document are written using the BNF notation, summarized below: Construct Syntax terminal symbols enclosed in single quotes a set of terminal symbols described in English italic nonterminal symbols boldface zero or more curly braces zero or one square brackets alternative vertical bar We also include a meta-production rule for expressing comma-delimited lists <NT>List ::= [ <NT> { ',' <NT>List } ] Outline The specification is organized in 6 parts. The parts cannot be read independently, as each part builds on concepts introduced in previous parts. Part 1: Introduction This section. Provides background information and preliminary definitions Part 2: Structure and Syntax of Instances Specification of the data model for instances in LinkML. The data model shown as UML for informative purposes. A normative functional-style syntax is provided for instances, and this syntax is used throughout the specification. This section also introduces a path accessor syntax for specifying how to traverse LinkML instances. Part 3: Structure of Schemas Specification of the core elements of a LinkML schema: ClassDefinitions, TypeDefinitions, SlotDefinitions, EnumDefinitions, as well as ancillary structures. Part 4: Derived Schemas and Schema Semantics Specification of inference procedures for derived schemas , which can be used for purposes such as validation. Part 5: Validation of Instance Data Specification of the procedure for validating LinkML instances using a derived schema Part 6: Mapping of Instance Data Specification of how LinkML instances are mapped to other data models and syntaxes: JSON/YAML RDF and JSON-LD","title":"Introduction"},{"location":"specification/01introduction/#introduction","text":"This document is a functional draft specification for the Linked Data Modeling Language (LinkML). LinkML is a data modeling language for describing the structure of a collection of instances , where instances are tree-like object-oriented structures. Instances are pieces of information that represent things of interest in a particular domain, such as individual people, biological samples, places, events, or abstract entities. Instances are either primitive types such as numbers or strings, or objects that are typed using classes from a LinkML schema . Classes are categories or groupings of things in the domain of interest; for example, \"Person\", \"Medical History\", \"Data file\", or \"Country\". Instances can be inter-related by assigning slot values ; for example, an instance of a Person may have values for slots \"name\" or \"country of birth\". LinkML schemas also specify rules for determining if instances conform to the schema, and for inference adding additional implicit slot values. LinkML is independent of any programming language, database technology, and is independent of any concrete form for serializing instances of schemas. Mappings are provided for serializing instances as JSON, YAML, RDF, flat tables, or relational models, or for mapping to programming language structures. However, the structure and semantics of LinkML are independent from any of these. Schemas are typically expressed using the YAML serialization, but this specification is defined independent of that particular serialization. LinkML is self-describing, and any LinkML schema is itself a collection instances that instantiates elements in a special schema called the LinkML metamodel .","title":"Introduction"},{"location":"specification/01introduction/#audience","text":"This document is intended for LinkML tool and framework implementors, and is intended to provide formal clarity about the structure and semantics of LinkML. For a more lightweight introduction, consult the material on the main LinkML site , including the LinkML tutorial.","title":"Audience"},{"location":"specification/01introduction/#conventions-and-terminology","text":"The key words \"MUST\", \"MUST NOT\", \"REQUIRED\", \"SHALL\", \"SHALL NOT\", \"SHOULD\", \"SHOULD NOT\", \"RECOMMENDED\", \"MAY\", and \"OPTIONAL\" in this document are to be interpreted as described in RFC 2119 .","title":"Conventions and terminology"},{"location":"specification/01introduction/#bnf","text":"Grammars in this document are written using the BNF notation, summarized below: Construct Syntax terminal symbols enclosed in single quotes a set of terminal symbols described in English italic nonterminal symbols boldface zero or more curly braces zero or one square brackets alternative vertical bar We also include a meta-production rule for expressing comma-delimited lists <NT>List ::= [ <NT> { ',' <NT>List } ]","title":"BNF"},{"location":"specification/01introduction/#outline","text":"The specification is organized in 6 parts. The parts cannot be read independently, as each part builds on concepts introduced in previous parts.","title":"Outline"},{"location":"specification/01introduction/#part-1-introduction","text":"This section. Provides background information and preliminary definitions","title":"Part 1: Introduction"},{"location":"specification/01introduction/#part-2-structure-and-syntax-of-instances","text":"Specification of the data model for instances in LinkML. The data model shown as UML for informative purposes. A normative functional-style syntax is provided for instances, and this syntax is used throughout the specification. This section also introduces a path accessor syntax for specifying how to traverse LinkML instances.","title":"Part 2: Structure and Syntax of Instances"},{"location":"specification/01introduction/#part-3-structure-of-schemas","text":"Specification of the core elements of a LinkML schema: ClassDefinitions, TypeDefinitions, SlotDefinitions, EnumDefinitions, as well as ancillary structures.","title":"Part 3: Structure of Schemas"},{"location":"specification/01introduction/#part-4-derived-schemas-and-schema-semantics","text":"Specification of inference procedures for derived schemas , which can be used for purposes such as validation.","title":"Part 4: Derived Schemas and Schema Semantics"},{"location":"specification/01introduction/#part-5-validation-of-instance-data","text":"Specification of the procedure for validating LinkML instances using a derived schema","title":"Part 5: Validation of Instance Data"},{"location":"specification/01introduction/#part-6-mapping-of-instance-data","text":"Specification of how LinkML instances are mapped to other data models and syntaxes: JSON/YAML RDF and JSON-LD","title":"Part 6: Mapping of Instance Data"},{"location":"specification/02instances/","text":"LinkML Instances Functional Instance Syntax and Structure This specification provides a grammar for a functional syntax for expressing LinkML instances. This syntax is not intended for data exchange, but instead for unambiguous describing data in LinkML. Section 6 specifies how the instance model is converted to JSON, YAML, and RDF. Instances An instance is either one of four definition types, or a collection, or the special token None : Instance := None | InstanceOfClass | AtomicInstance | CollectionInstance AtomicInstance := InstanceOfType | InstanceOfEnum | InstanceOfReference classDiagram Instance <|-- InstanceOfClass Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum Instance <|-- CollectionInstance Instance <-- None Definition Types and Names Definition names are used to unambiguously indicate definitions specified in a Schema (described in the next section ): ClassDefinitionName := ElementName ClassDefinitionReferenceName := ElementName TypeDefinitionName := ElementName EnumDefinitionName := ElementName SlotDefinitionName := ElementName ElementName := a finite sequence of characters matching the PN_LOCAL production of SPARQL and not matching any of the keyword terminals of the syntax Note that the grammar needs a table mapping names to types in order to unambiguously parse a serialization in functional syntax names must not be shared across definition types Instances of Classes An InstanceOfClass is a pair consisting of (1) a ClassDefinition Name that indicates the instantiation type of the instance, and (2) zero to many Assignments , where each assignment is a key-value pair of a SlotName and an Instance * value. InstanceOfClass := ClassDefinitionName '(' < Assignment >List ')' Assignment := SlotName '=' Instance classDiagram Instance <|-- InstanceOfClass InstanceOfClass \"1\" --> \"1..*\" Assignment Assignment \"1\" --> Instance class InstanceOfClass { +ClassDefinitionName type +Assignment assignments } class Assignment { +SlotDefinitionName slot +Instance value } No SlotName can appear twice in any set of Assignments (i.e. SlotName is a key) An example instance might be written in functional syntax as: Person(id=..., name=..., age=..., <other Assignments>) where this instantiates the class with name \"Person\". Primitive (Atomic) Instances There are 3 types of primitive instances, each is a pair consisting of (1) a Name of the element instantiated (2) an atomic value InstanceOfType := TypeDefinitionName '(' AtomicValue ')' InstanceOfEnum := EnumDefinitionName '(' AtomicValue ')' InstanceOfReference := ClassDefinitionReferenceName '(' AtomicValue ')' classDiagram Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum class Instance { } class AtomicInstance { +AtomicValue value } class InstanceOfReference { +ClassDefinitionName type } class InstanceOfType { +TypeDefinitionName type } class InstanceOfEnum { +EnumDefinitionName type } Atomic Values An atomic value is either a string or number or boolean, where numbers can be floating points, decimals, or integers. AtomicValue := StringValue | NumberValue | BooleanValue StringValue := a finite sequence of characters in which \" (U+22) and \\ (U+5C) occur only in pairs of the form \\\" (U+5C, U+22) and \\ (U+5C, U+5C), enclosed in a pair of \" (U+22) characters NumberValue := FloatingPointValue | DecimalValue | IntegerValue FloatingPointValue ::= [ '+' | '-'] ( Digits ['.' Digits ] [ Exponent ] | '.' Digits [ Exponent ]) ( 'f' | 'F' ) Exponent ::= ('e' | 'E') ['+' | '-'] Digits DecimalValue ::= ['+' | '-'] Digits '.' Digits IntegerValue ::= ['+' | '-'] Digits NonNegativeInteger ::= Zero | PositiveInteger PositiveInteger ::= NonZero { Digit } Digits ::= Digit { Digit } Digit ::= Zero | NonZero NonZero := '1' | '2' | '3' | '4' | '5' | '6' | '7' | '8' | '9' Zero ::= '0' BooleanValue ::= 'True' | 'False' Examples of atomic values are: 180.2 -- a DecimalValue 5 -- an IntegerValue \"Alex\" -- a StringValue Atomic Instance Examples An InstanceOfType instance might look like: Integer(23) For this to be a valid InstanceOfType, \"Integer\" must be the name of a TypeDefinition in the schema Another example: PhoneNumber(\"+1 800 555 0100\") For this to be a valid InstanceOfType, \"PhoneNumber\" must be the name of a TypeDefinition in the schema If the schema includes a ClassReference \"PersonId\" then the following is a valid InstanceOfReference PersonId(\"SSN:456\") This MAY be the same string used to identify an instance of a ClassDefinition Person(id=\"SSN:456\") , but this is not required. Collections A collection is zero or more instances, serialized as a comma-delimited list: CollectionInstance := '[' < Instance >List ']' classDiagram Instance <|-- CollectionInstance CollectionInstance \"*\" --> \"0..*\" Instance Examples of collections: [String(\"A\"), String(\"B\"), Integer(5)] -- a list of primitive instances [Person(name=..., ...), Person(name=..., ...)] -- a list of class instances [Person(name=..., ...), Integer(5), None] -- a heterogeneous collection [] -- an empty collection None (Null) instances A special symbol is included to indicate null or missing values None := 'None' An assignment of a slot to None is equivalent to omitting that assignment. I.e. the following two instance serializations are equivalent: Person(address=None) Person() Combined Example The following is an example of an InstanceOfClass where the instantiated type is a class with name \"Person\": Person( id=String(\"SSN:123\"), name=String(\"Alex\"), aliases=[String(\"Alexandra\")], address=None, phone=PhoneNumber(\"+1 800 555 0100\"), height= Measurement(value=Decimal(170.2) unit=UnitCode(\"cm\")), relationships=[ FamilialRelationship( type=RelationshipType(\"SIBLING_OF\"), related_to=PersonId(\"SSN:456\") ) ] ) Parsing this requires a schema that assigns element names to schema elements: Element Name Schema Type Person ClassDefinition Measurement ClassDefinition FamilialRelationship ClassDefinition UnitCode EnumDefinition Person ClassDefinition Identity conditions For two instances i and j to be identical they must be of the same metatype. Identity conditions for two primitive instances are satisfied if both DefinitionName and AtomicValue match i=<DefinitionName_i>(<AtomicValue_i>) j=<DefinitionName_j>(<AtomicValue_j>) i=j iff DefinitionName_i = DefinitionName_j and AtomicValue_i=AtomicValue_j None is identical to itself Two collections are identical if they are of the same length and each member of i is identical to at least one member of j , where each match must be unique Two ClassDefinition instances are identical if the instantiated ClassDefinitionName is identical and each non- None assignment in i is identical an assignment in j and, and each non-None assignment in j is identical to an assignment in i Two assignments are identical if the slot name is the same, and the value is identical Instance Serializations The abstract syntax provided here is intended as a normative syntax for the purposes of specifying the semantics of LinkML. See section 6 for details on how this functional syntax maps to other serialization syntaxes and models such as JSON and RDF. Instance Accessor Syntax For a given instance i , accessor syntax can be used to dereference values. Path := SlotDefinitionName { PathExtension } PathExtension := '.' SlotDefinitionName | '[' Identifier ']' To interpret an accessor for a given instance i : if the path extension is .<s> then i must be an * InstanceOfClass , and the value is equal to the value of the slot assignment for slot s if the path extension is [<id>] then i must be an InstanceOfCollection , and the value is equals to the member of that list that has a slot with the role of identifier whose value is <id> For example, if i is equal to the Person instance in the example above: i.id == String(\"SSN:123\") i.height.unit == String(\"cm\")","title":"Instances"},{"location":"specification/02instances/#linkml-instances","text":"","title":"LinkML Instances"},{"location":"specification/02instances/#functional-instance-syntax-and-structure","text":"This specification provides a grammar for a functional syntax for expressing LinkML instances. This syntax is not intended for data exchange, but instead for unambiguous describing data in LinkML. Section 6 specifies how the instance model is converted to JSON, YAML, and RDF.","title":"Functional Instance Syntax and Structure"},{"location":"specification/02instances/#instances","text":"An instance is either one of four definition types, or a collection, or the special token None : Instance := None | InstanceOfClass | AtomicInstance | CollectionInstance AtomicInstance := InstanceOfType | InstanceOfEnum | InstanceOfReference classDiagram Instance <|-- InstanceOfClass Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum Instance <|-- CollectionInstance Instance <-- None","title":"Instances"},{"location":"specification/02instances/#definition-types-and-names","text":"Definition names are used to unambiguously indicate definitions specified in a Schema (described in the next section ): ClassDefinitionName := ElementName ClassDefinitionReferenceName := ElementName TypeDefinitionName := ElementName EnumDefinitionName := ElementName SlotDefinitionName := ElementName ElementName := a finite sequence of characters matching the PN_LOCAL production of SPARQL and not matching any of the keyword terminals of the syntax Note that the grammar needs a table mapping names to types in order to unambiguously parse a serialization in functional syntax names must not be shared across definition types","title":"Definition Types and Names"},{"location":"specification/02instances/#instances-of-classes","text":"An InstanceOfClass is a pair consisting of (1) a ClassDefinition Name that indicates the instantiation type of the instance, and (2) zero to many Assignments , where each assignment is a key-value pair of a SlotName and an Instance * value. InstanceOfClass := ClassDefinitionName '(' < Assignment >List ')' Assignment := SlotName '=' Instance classDiagram Instance <|-- InstanceOfClass InstanceOfClass \"1\" --> \"1..*\" Assignment Assignment \"1\" --> Instance class InstanceOfClass { +ClassDefinitionName type +Assignment assignments } class Assignment { +SlotDefinitionName slot +Instance value } No SlotName can appear twice in any set of Assignments (i.e. SlotName is a key) An example instance might be written in functional syntax as: Person(id=..., name=..., age=..., <other Assignments>) where this instantiates the class with name \"Person\".","title":"Instances of Classes"},{"location":"specification/02instances/#primitive-atomic-instances","text":"There are 3 types of primitive instances, each is a pair consisting of (1) a Name of the element instantiated (2) an atomic value InstanceOfType := TypeDefinitionName '(' AtomicValue ')' InstanceOfEnum := EnumDefinitionName '(' AtomicValue ')' InstanceOfReference := ClassDefinitionReferenceName '(' AtomicValue ')' classDiagram Instance <|-- AtomicInstance AtomicInstance <|-- InstanceOfReference AtomicInstance <|-- InstanceOfType AtomicInstance <|-- InstanceOfEnum class Instance { } class AtomicInstance { +AtomicValue value } class InstanceOfReference { +ClassDefinitionName type } class InstanceOfType { +TypeDefinitionName type } class InstanceOfEnum { +EnumDefinitionName type }","title":"Primitive (Atomic) Instances"},{"location":"specification/02instances/#atomic-values","text":"An atomic value is either a string or number or boolean, where numbers can be floating points, decimals, or integers. AtomicValue := StringValue | NumberValue | BooleanValue StringValue := a finite sequence of characters in which \" (U+22) and \\ (U+5C) occur only in pairs of the form \\\" (U+5C, U+22) and \\ (U+5C, U+5C), enclosed in a pair of \" (U+22) characters NumberValue := FloatingPointValue | DecimalValue | IntegerValue FloatingPointValue ::= [ '+' | '-'] ( Digits ['.' Digits ] [ Exponent ] | '.' Digits [ Exponent ]) ( 'f' | 'F' ) Exponent ::= ('e' | 'E') ['+' | '-'] Digits DecimalValue ::= ['+' | '-'] Digits '.' Digits IntegerValue ::= ['+' | '-'] Digits NonNegativeInteger ::= Zero | PositiveInteger PositiveInteger ::= NonZero { Digit } Digits ::= Digit { Digit } Digit ::= Zero | NonZero NonZero := '1' | '2' | '3' | '4' | '5' | '6' | '7' | '8' | '9' Zero ::= '0' BooleanValue ::= 'True' | 'False' Examples of atomic values are: 180.2 -- a DecimalValue 5 -- an IntegerValue \"Alex\" -- a StringValue","title":"Atomic Values"},{"location":"specification/02instances/#atomic-instance-examples","text":"An InstanceOfType instance might look like: Integer(23) For this to be a valid InstanceOfType, \"Integer\" must be the name of a TypeDefinition in the schema Another example: PhoneNumber(\"+1 800 555 0100\") For this to be a valid InstanceOfType, \"PhoneNumber\" must be the name of a TypeDefinition in the schema If the schema includes a ClassReference \"PersonId\" then the following is a valid InstanceOfReference PersonId(\"SSN:456\") This MAY be the same string used to identify an instance of a ClassDefinition Person(id=\"SSN:456\") , but this is not required.","title":"Atomic Instance Examples"},{"location":"specification/02instances/#collections","text":"A collection is zero or more instances, serialized as a comma-delimited list: CollectionInstance := '[' < Instance >List ']' classDiagram Instance <|-- CollectionInstance CollectionInstance \"*\" --> \"0..*\" Instance Examples of collections: [String(\"A\"), String(\"B\"), Integer(5)] -- a list of primitive instances [Person(name=..., ...), Person(name=..., ...)] -- a list of class instances [Person(name=..., ...), Integer(5), None] -- a heterogeneous collection [] -- an empty collection","title":"Collections"},{"location":"specification/02instances/#none-null-instances","text":"A special symbol is included to indicate null or missing values None := 'None' An assignment of a slot to None is equivalent to omitting that assignment. I.e. the following two instance serializations are equivalent: Person(address=None) Person()","title":"None (Null) instances"},{"location":"specification/02instances/#combined-example","text":"The following is an example of an InstanceOfClass where the instantiated type is a class with name \"Person\": Person( id=String(\"SSN:123\"), name=String(\"Alex\"), aliases=[String(\"Alexandra\")], address=None, phone=PhoneNumber(\"+1 800 555 0100\"), height= Measurement(value=Decimal(170.2) unit=UnitCode(\"cm\")), relationships=[ FamilialRelationship( type=RelationshipType(\"SIBLING_OF\"), related_to=PersonId(\"SSN:456\") ) ] ) Parsing this requires a schema that assigns element names to schema elements: Element Name Schema Type Person ClassDefinition Measurement ClassDefinition FamilialRelationship ClassDefinition UnitCode EnumDefinition Person ClassDefinition","title":"Combined Example"},{"location":"specification/02instances/#identity-conditions","text":"For two instances i and j to be identical they must be of the same metatype. Identity conditions for two primitive instances are satisfied if both DefinitionName and AtomicValue match i=<DefinitionName_i>(<AtomicValue_i>) j=<DefinitionName_j>(<AtomicValue_j>) i=j iff DefinitionName_i = DefinitionName_j and AtomicValue_i=AtomicValue_j None is identical to itself Two collections are identical if they are of the same length and each member of i is identical to at least one member of j , where each match must be unique Two ClassDefinition instances are identical if the instantiated ClassDefinitionName is identical and each non- None assignment in i is identical an assignment in j and, and each non-None assignment in j is identical to an assignment in i Two assignments are identical if the slot name is the same, and the value is identical","title":"Identity conditions"},{"location":"specification/02instances/#instance-serializations","text":"The abstract syntax provided here is intended as a normative syntax for the purposes of specifying the semantics of LinkML. See section 6 for details on how this functional syntax maps to other serialization syntaxes and models such as JSON and RDF.","title":"Instance Serializations"},{"location":"specification/02instances/#instance-accessor-syntax","text":"For a given instance i , accessor syntax can be used to dereference values. Path := SlotDefinitionName { PathExtension } PathExtension := '.' SlotDefinitionName | '[' Identifier ']' To interpret an accessor for a given instance i : if the path extension is .<s> then i must be an * InstanceOfClass , and the value is equal to the value of the slot assignment for slot s if the path extension is [<id>] then i must be an InstanceOfCollection , and the value is equals to the member of that list that has a slot with the role of identifier whose value is <id> For example, if i is equal to the Person instance in the example above: i.id == String(\"SSN:123\") i.height.unit == String(\"cm\")","title":"Instance Accessor Syntax"},{"location":"specification/03schemas/","text":"Schema Datamodel This section describes the structure of a LinkML schema. For precise interpretation of these structures, refer to the following two sections on derived schemas and validation Schema Basics A LinkML schema specifies rules and structural conformance conditions for instances . Schemas allow for: parsing of instance serializations to LinkML instance structures structurally and semantically validating LinkML instance structures inference of missing values in LinkML instance structures Every LinkML schema m is itself an instance of a special class SchemaDefinition that forms part of a special schema called the LinkML metamodel , which is denoted as m M . There is exactly one metamodel. In this specification: ClassDefinitions in m M are called metaclasses SlotDefinitions in m M are called metaslots The metamodel is itself expressed in LinkML, and the latest version can found from canonical URLs: https://w3id.org/linkml/SchemaDefinition -- generated documentation https://w3id.org/linkml/meta.yaml -- canonical YAML serialization This specification specifies the normative elements necessary to specify the behavior of LinkML schemas. Schemas may have additional elements provided in the metamodel. For example, elements in schemas can have informative slot assignments for slots such as title , description , and so on, but these slots are not described in this specification as they are not normative and do not affect the formal interpretation of schemas. YAML representation of schemas Because schemas and all the parts of a schema are instances of metaclasses in the metamodel, the YAML serialization rules from section 6 can be applied to both serialized and deserialized a schema as YAML. Analogies to other modeling frameworks To help understand the basic concepts, it can be helpful to think about analogous structures in other frameworks. However, it should be understood these are not equivalents. ClassDefinitions are analogous to: classes in object-oriented languages tables in relational databases and spreadsheets owl:Class entities in RDFS/OWL SlotDefinitions are analogous to: attributes in object-oriented languages columns or fields in relational databases and spreadsheets properties in JSON-Schema rdf:Property entities in RDFS/OWL EnumDefinitions are analogous to: enumerated types in programming languages and some relational systems drop-down selections in spreadsheets Note however that in LinkML enums are optionally backed by stronger semantics with enum elements (permissible values) mapped to vocabularies or ontologies EnumDefinitions are analogous to: data types in most object-oriented languages primitive types in database systems extensible types in some systems rdf:Literals in RDF Datatypes in OWL SchemaDefinition Metaclass metamodel documentation: SchemaDefinition SchemaDefinition: Normative subset metaslots A schema m is an instance of a SchemaDefinition, with normative elements: Name Cardinality and Range Description id 1..1 xsd:anyURI The official schema URI name 1..1 xsd:string a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 xsd:string default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* xsd:anyURI other schemas that are included in this schema rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element SchemaDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram SchemaDefinition \"1\" --> \"*\" ClassDefinition: classes SchemaDefinition \"1\" --> \"*\" SlotDefinition: slots SchemaDefinition \"1\" --> \"*\" EnumDefinition: enums SchemaDefinition \"1\" --> \"*\" EnumDefinition: Enums SchemaDefinition \"1\" --> \"*\" SubsetDefinition: subsets SchemaDefinition \"1\" --> \"*\" Prefix: prefixes ClassDefinition --|> Element SlotDefinition --|> Element EnumDefinition --|> Element EnumDefinition --|> Element class SchemaDefinition { +Uri id +NcName name +UriOrCurie[] imports +Ncname default_prefix +Uri default_range } Schema example, functional syntax The skeleton of a schema instance serialized as in functional syntax might look like: SchemaDefinition( id=String('http://example.org/organization'), imports=[...], prefixes=[...], classes=[...], slots=[...], enums=[...], types=[...], ) Schema example, YAML The skeleton of the above schema instance serialized as YAML might look like: id: http://example.org/personinfo imports: ... prefixes: ... classes: ... slots: ... enums: ... types: ... ClassDefinition Metaclass metamodel documentation: ClassDefinition Instances of ClassDefinition are themselves instantiable . For example, a schema may contain a class definition \"Person\". This class definition instantiates the metaclass ClassDefinition , and can have instances, of actual persons. Any LinkML instance that instantiates a ClassDefinition will have zero to many slot-value assignments, constrained by rules that operate off of the metaslot assignments of that class. ClassDefinition: Normative subset metaslots Any instance c of a ClassDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier class_uri 0..1 xsd:anyURI URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 xsd:boolean indicator that this is the root class in tree structures rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element ClassDefinition: UML A subset of the above normative slots are depicted as follows: classDiagram ClassExpression \"1\" --> \"*\" AnonymousClassExpression: any_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: exactly_one_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: none_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: all_of ClassDefinition --|> ClassExpression: mixin ClassDefinition --|> Element: is_a AnonymousClassExpression --|> ClassExpression class ClassDefinition { +ClassDefinitionName name +boolean abstract +boolean mixin } ClassDefinition \"*\" --> \"*\" SlotDefinition: slots ClassDefinition \"1\" --> \"*\" SlotDefinition: slot_usage ClassDefinition \"1\" --> \"*\" SlotDefinition: attributes ClassDefinition \"*\"--> \"0..1\" ClassDefinition: is_a ClassDefinition \"1\" --> \"*\" ClassDefinition: mixins ClassDefinition \"1\" --> \"*\" AnonymousClassExpression: classification_rules ClassDefinition \"1\" --> \"*\" ClassRule: rules ClassExpressions and anonymous ClassExpressions Note this metaclass exemplifies a pattern that is reused by TypeDefinition, SlotDefinition and EnumDefinition metaclasses, below. For the core definition types <D> , there are a triad of 3 metaclasses in the metamodel: <D>Expression Anonymous<D>Expression <D>Definition depicted as: classDiagram D_Expression \"*\" --> AnonymousD_Expression: <boolean combinator> class D_Definition { +D_Name name } D_Definition --|> D_Expression AnonymousT_Expression --|> D_Expression For many purposes, all that is required is the Definition element. The purpose of the above abstraction is to allow composition of anonymous expressions using boolean operators. For example, we may want to refer to the union of collection of ClassDefinitions. Class Definition Example, Functional Syntax A collection of ClassDefinition instances might look [ ClassDefinition( name=String(\"NamedThing\"), abstract=True, slots=[ String(\"id\"), String(\"name\"), ... ] ), ClassDefinition( name=String(\"Person\"), description=String(\"A person, living or dead\"), is_a=String(\"NamedThing\"), attributes=[ SlotDefinition( name=String(\"height\"), ...), SlotDefinition( name=String(\"age\"), ...) ), ... ], Class Definition Example, YAML The above example following the YAML serialization is: NamedThing: abstract: true slots: - id - name Person: description: A person, living or dead is_a: NamedThing attributes: height: ... age: ... SlotDefinition Metaclass metamodel documentation: SlotDefinition Instances of SlotDefinition are not themselves instantiable . Each assignment in a LinkML ClassDefinition instance must use a SlotDefinition from the schema. SlotDefinition: Normative subset metaslots SlotDefinition inherits from both Element and SlotExpression. A SlotDefinition must have a name . other schema elements may refer to AnonymousSlotExpression s composed using boolean operators. Any instance s of a SlotDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier slot_uri 0..1 xsd:anyURI predicate of this slot for semantic web application identifier 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container alias 0..1 xsd:string the name used for a slot in the context of its owning class multivalued 0..1 xsd:boolean true means that slot can have more than one value required 0..1 xsd:boolean true means that the slot must be present in the loaded definition recommended 0..1 xsd:boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 xsd:boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 xsd:boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 xsd:boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 xsd:string function that provides a default value for the slot list_elements_unique 0..1 xsd:boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 xsd:boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 xsd:boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 xsd:boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 xsd:boolean If s is symmetric, and i reflexive 0..1 xsd:boolean If s is reflexive, then i locally_reflexive 0..1 xsd:boolean If s is locally_reflexive, then i irreflexive 0..1 xsd:boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 xsd:boolean If s is antisymmetric, and i transitive 0..1 xsd:boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 xsd:boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 xsd:string the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 xsd:integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 xsd:integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the values of the slot is multivalued with at least one member satisfying the... all_members 0..* SlotDefinition the value of the multiavlued slot is a list where all elements conform to the... abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element SlotDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram class SlotExpression { +SlotDefinitionName range } SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: any_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: exactly_one_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: none_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: all_of class SlotDefinition { +SlotDefinitionName name +boolean identifier +boolean key +boolean abstract +boolean mixin +boolean designates_type +SlotDefinitionName is_a +SlotDefinitionName[] mixins +ClassDefinitionName range +Decimal minimum_value +Decimal maximum_value +String equals_expression +String pattern +String string_serialization +boolean symmetric +boolean asymmetric +boolean reflexive +boolean irreflexive +boolean locally_reflexive +boolean transitive +SlotDefinition transitive_form_of +SlotDefinition reflexive_transitive_form_of +SlotDefinition inverse } SlotDefinition --|> SlotExpression: mixin SlotDefinition --|> Element: is_a SlotDefinition \"0..1\" --> SlotDefinition: is_a SlotDefinition \"*\" --> SlotDefinition: mixins Slot Definition Example, Functional Syntax An example collection of SlotDefinitions might be: SchemaDefinition( slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"A unique identifier for an object\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... ) EnumDefinition Metaclass metamodel documentation: EnumDefinition Instances of EnumDefinition instances are instantiable . For example, a schema may have an enumeration with name \"JobCode\". This is an instance of an EnumDefinition, and can also be instantiated by different permissible values such as \"Forklift Driver\" EnumDefinition: Normative subset metaslots Any instance e of a EnumDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 xsd:anyURI URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 xsd:anyURI the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element EnumDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram class EnumExpression { +TypeDefinitionName range } EnumExpression \"*\" --> AnonymousEnumExpression: any_of EnumExpression \"*\" --> AnonymousEnumExpression: exactly_one_of EnumExpression \"*\" --> AnonymousEnumExpression: none_of EnumExpression \"*\" --> AnonymousEnumExpression: all_of class EnumDefinition { +EnumDefinitionName name } EnumDefinition \"*\" --> PermissibleValue: permissible_values class PermissibleValue { +String text +String description +UriOrCurie meaning } TypeDefinition Metaclass metamodel documentation: TypeDefinition Instances of TypeDefinition are themselves instantiable . For example, a schema might contain a TypeDefinition with name \"PhoneNumber\". This is an instance of TypeDefinition, and can itself be instantiated by individual phone numbers. TypeDefinition: Normative subset metaslots Any instance t of a TypeDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier type_uri 0..1 xsd:anyURI The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 xsd:string python base type that implements this type definition repr 0..1 xsd:string the name of the python object that implements this type definition pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element TypeDefinition: Normative subset UML A subset of the above normative slots are depicted as follows: classDiagram class TypeExpression { +TypeDefinitionName range } TypeExpression \"*\" --> AnonymousTypeExpression: any_of TypeExpression \"*\" --> AnonymousTypeExpression: exactly_one_of TypeExpression \"*\" --> AnonymousTypeExpression: none_of TypeExpression \"*\" --> AnonymousTypeExpression: all_of AnonymousTypeExpression --|> TypeExpression TypeDefinition --|> TypeExpression class TypeDefinition { +TypeDefinitionName name +TypeDefinitionName typeof +TypeDefinitionName[] mixins +Uri uri +String base +String repr } TypeDefinition --|> TypeExpression: mixin TypeDefinition --|> Element: is_a Default Types LinkML includes a default schema of types Schema: https://w3id.org/linkml/types.yaml . Documentation: https://linkml.io/linkml-model/docs/#types These are: Boolean (Bool) - A binary (true or false) value Date (XSDDate) - a date (year, month and day) in an idealized calendar Datetime (XSDDateTime) - The combination of a date and time Decimal (Decimal) - A real number with arbitrary precision that conforms to the xsd:decimal specification Double (float) - A real number that conforms to the xsd:double specification Float (float) - A real number that conforms to the xsd:float specification Integer (int) - An integer Ncname (NCName) - Prefix part of CURIE Nodeidentifier (NodeIdentifier) - A URI, CURIE or BNODE that represents a node in a model. Objectidentifier (ElementIdentifier) - A URI or CURIE that represents an object in the model. String (str) - A character string Time (XSDTime) - A time object represents a (local) time of day, independent of any particular day Uri (URI) - a complete URI Uriorcurie (URIorCURIE) - a URI or a CURIE The type schema can be imported, used directly, or used as a basis to extend new types ClassDefinitionReference Metaclass ClassDefinitionReferences are primitive elements that provide a way to reference a particular instances. ClassDefinitionReferences are not part of the asserted schema but are derived from derivation rules -- see next section Prefix Metaclass metamodel documentation: Prefix A schema can contain any number of prefixes. Each prefix maps a short name such as \"owl\" to a URI. These are used to determine the canonical URI for any element. Prefix: Normative subset metaslots Name Cardinality and Range Description prefix_prefix 0..1 xsd:string the nsname (sans ':' for a given prefix) prefix_reference 1..1 xsd:anyURI A URI associated with a given prefix Prefix: Normative subset UML classDiagram SchemaDefinition \"*\" --> \"*\" Prefix: prefixes class Prefix { +Ncname prefix_prefix +Uri prefix_reference } Prefix Example, Functional Syntax SchemaDefinition( prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ]) Prefix Example, YAML prefixes: linkml: https://w3id.org/linkml/ schema: http://schema.org/ wgs: http://www.w3.org/2003/01/geo/wgs84_pos# qudt: http://qudt.org/1.1/schema/qudt# Complete Schema Example (Informative) For example, consider a schema that models representations of individual people and organizations they belong to may include a class definition Person , and slot definitions for name , address , relationships and so on. This might be depicted in UML as: classDiagram Person \"0\" --> \"*\" Person: knows class Person { +String id +String name +Float height +Date date_of_birth +JobCode occupation } This would have a YAML serialization (see section 6): classes: Person: description: ... slots: - id - name - height - date_of_birth - occupation - knows slots: id: identifier: true range: string name: range: string date_of_birth: range: date height: range: float occupation: range: JobCode knows: range: Person multivalued: true enums: JobCode: permissible_values: ForkliftDriver: ...: types: date: ... Because schemas, are instances of the metamodel, this hypothetical schema may be serialized in functional instance syntax as follows: SchemaDefinition( id=String(\"http://example.org/organization\"), name=String(\"organization\"), prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"org\") prefix_reference=Uri(\"http://example.org/organization/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ], default_prefix=String(\"org\"), imports=[ Uriorcurie(\"linkml:types\") ], classes=[ ClassDefinition( name=String(\"Person\"), slots=[ String(\"id\"), String(\"name\"), String(\"height\"), String(\"age\"), String(\"knows\"), String(\"job\"), ... ] ), ClassDefinition( name=String(\"Organization\"), slots=[ String(\"id\"), ... ] ), ... ], slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"occupation\"), description=String(\"...\"), range=String(\"JobCode\"), ... ), SlotDefinition( name=String(\"date_of_birth\"), description=String(\"...\"), range=String(\"Date\"), ... ), SlotDefinition( name=String(\"knows\"), description=String(\"...\"), range=String(\"Person\"), multivalued=Boolean(True), ... ) ], enums=[ EnumDefinition( name=String(\"JobCode\"), permissible_values=[...], ) ], types=[ TypeDefinition( name=String(\"Date\"), ... ), TypeDefinition( name=String(\"String\"), ... ), ] )","title":"Schema Datamodel"},{"location":"specification/03schemas/#schema-datamodel","text":"This section describes the structure of a LinkML schema. For precise interpretation of these structures, refer to the following two sections on derived schemas and validation","title":"Schema Datamodel"},{"location":"specification/03schemas/#schema-basics","text":"A LinkML schema specifies rules and structural conformance conditions for instances . Schemas allow for: parsing of instance serializations to LinkML instance structures structurally and semantically validating LinkML instance structures inference of missing values in LinkML instance structures Every LinkML schema m is itself an instance of a special class SchemaDefinition that forms part of a special schema called the LinkML metamodel , which is denoted as m M . There is exactly one metamodel. In this specification: ClassDefinitions in m M are called metaclasses SlotDefinitions in m M are called metaslots The metamodel is itself expressed in LinkML, and the latest version can found from canonical URLs: https://w3id.org/linkml/SchemaDefinition -- generated documentation https://w3id.org/linkml/meta.yaml -- canonical YAML serialization This specification specifies the normative elements necessary to specify the behavior of LinkML schemas. Schemas may have additional elements provided in the metamodel. For example, elements in schemas can have informative slot assignments for slots such as title , description , and so on, but these slots are not described in this specification as they are not normative and do not affect the formal interpretation of schemas.","title":"Schema Basics"},{"location":"specification/03schemas/#yaml-representation-of-schemas","text":"Because schemas and all the parts of a schema are instances of metaclasses in the metamodel, the YAML serialization rules from section 6 can be applied to both serialized and deserialized a schema as YAML.","title":"YAML representation of schemas"},{"location":"specification/03schemas/#analogies-to-other-modeling-frameworks","text":"To help understand the basic concepts, it can be helpful to think about analogous structures in other frameworks. However, it should be understood these are not equivalents. ClassDefinitions are analogous to: classes in object-oriented languages tables in relational databases and spreadsheets owl:Class entities in RDFS/OWL SlotDefinitions are analogous to: attributes in object-oriented languages columns or fields in relational databases and spreadsheets properties in JSON-Schema rdf:Property entities in RDFS/OWL EnumDefinitions are analogous to: enumerated types in programming languages and some relational systems drop-down selections in spreadsheets Note however that in LinkML enums are optionally backed by stronger semantics with enum elements (permissible values) mapped to vocabularies or ontologies EnumDefinitions are analogous to: data types in most object-oriented languages primitive types in database systems extensible types in some systems rdf:Literals in RDF Datatypes in OWL","title":"Analogies to other modeling frameworks"},{"location":"specification/03schemas/#schemadefinition-metaclass","text":"metamodel documentation: SchemaDefinition","title":"SchemaDefinition Metaclass"},{"location":"specification/03schemas/#schemadefinition-normative-subset-metaslots","text":"A schema m is an instance of a SchemaDefinition, with normative elements: Name Cardinality and Range Description id 1..1 xsd:anyURI The official schema URI name 1..1 xsd:string a unique name for the schema that is both human-readable and consists of only... identifier classes 0..* ClassDefinition An index to the collection of all class definitions in the schema slot_definitions 0..* SlotDefinition An index to the collection of all slot definitions in the schema enums 0..* EnumDefinition An index to the collection of all enum definitions in the schema subsets 0..* SubsetDefinition An index to the collection of all subset definitions in the schema prefixes 0..* Prefix prefix / URI definitions to be added to the context beyond those fetched from... default_prefix 0..1 xsd:string default and base prefix -- used for ':' identifiers, @base and @vocab default_range 0..1 TypeDefinition default slot range to be used if range element is omitted from a slot definit... settings 0..* Setting A collection of global variable settings imports 0..* xsd:anyURI other schemas that are included in this schema rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"SchemaDefinition: Normative subset metaslots"},{"location":"specification/03schemas/#schemadefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram SchemaDefinition \"1\" --> \"*\" ClassDefinition: classes SchemaDefinition \"1\" --> \"*\" SlotDefinition: slots SchemaDefinition \"1\" --> \"*\" EnumDefinition: enums SchemaDefinition \"1\" --> \"*\" EnumDefinition: Enums SchemaDefinition \"1\" --> \"*\" SubsetDefinition: subsets SchemaDefinition \"1\" --> \"*\" Prefix: prefixes ClassDefinition --|> Element SlotDefinition --|> Element EnumDefinition --|> Element EnumDefinition --|> Element class SchemaDefinition { +Uri id +NcName name +UriOrCurie[] imports +Ncname default_prefix +Uri default_range }","title":"SchemaDefinition: Normative subset UML"},{"location":"specification/03schemas/#schema-example-functional-syntax","text":"The skeleton of a schema instance serialized as in functional syntax might look like: SchemaDefinition( id=String('http://example.org/organization'), imports=[...], prefixes=[...], classes=[...], slots=[...], enums=[...], types=[...], )","title":"Schema example, functional syntax"},{"location":"specification/03schemas/#schema-example-yaml","text":"The skeleton of the above schema instance serialized as YAML might look like: id: http://example.org/personinfo imports: ... prefixes: ... classes: ... slots: ... enums: ... types: ...","title":"Schema example, YAML"},{"location":"specification/03schemas/#classdefinition-metaclass","text":"metamodel documentation: ClassDefinition Instances of ClassDefinition are themselves instantiable . For example, a schema may contain a class definition \"Person\". This class definition instantiates the metaclass ClassDefinition , and can have instances, of actual persons. Any LinkML instance that instantiates a ClassDefinition will have zero to many slot-value assignments, constrained by rules that operate off of the metaslot assignments of that class.","title":"ClassDefinition Metaclass"},{"location":"specification/03schemas/#classdefinition-normative-subset-metaslots","text":"Any instance c of a ClassDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier class_uri 0..1 xsd:anyURI URI of the class that provides a semantic interpretation of the element in a ... is_a 0..1 ClassDefinition A primary parent class from which inheritable metaslots are propagated mixins 0..* ClassDefinition A collection of secondary parent mixin classes from which inheritable metaslo... slots 0..* SlotDefinition collection of slot names that are applicable to a class slot_usage 0..* SlotDefinition the refinement of a slot in the context of the containing class definition attributes 0..* SlotDefinition Inline definition of slots tree_root 0..1 xsd:boolean indicator that this is the root class in tree structures rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousClassExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousClassExpression holds if only one of the expressions hold none_of 0..* AnonymousClassExpression holds if none of the expressions hold all_of 0..* AnonymousClassExpression holds if all of the expressions hold union_of 0..* ClassDefinition indicates that the domain element consists exactly of the members of the elem... unique_keys 0..* UniqueKey A collection of unique keys for this class rules 0..* ClassRule the collection of rules that apply to all members of this class classification_rules 0..* AnonymousClassExpression the collection of classification rules that apply to all members of this clas... disjoint_with 0..* ClassDefinition Two classes are disjoint if they have no instances in common, two slots are d... slot_conditions 0..* SlotDefinition expresses constraints on a group of slots for a class expression abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"ClassDefinition: Normative subset metaslots"},{"location":"specification/03schemas/#classdefinition-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram ClassExpression \"1\" --> \"*\" AnonymousClassExpression: any_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: exactly_one_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: none_of ClassExpression \"1\" --> \"*\" AnonymousClassExpression: all_of ClassDefinition --|> ClassExpression: mixin ClassDefinition --|> Element: is_a AnonymousClassExpression --|> ClassExpression class ClassDefinition { +ClassDefinitionName name +boolean abstract +boolean mixin } ClassDefinition \"*\" --> \"*\" SlotDefinition: slots ClassDefinition \"1\" --> \"*\" SlotDefinition: slot_usage ClassDefinition \"1\" --> \"*\" SlotDefinition: attributes ClassDefinition \"*\"--> \"0..1\" ClassDefinition: is_a ClassDefinition \"1\" --> \"*\" ClassDefinition: mixins ClassDefinition \"1\" --> \"*\" AnonymousClassExpression: classification_rules ClassDefinition \"1\" --> \"*\" ClassRule: rules","title":"ClassDefinition: UML"},{"location":"specification/03schemas/#classexpressions-and-anonymous-classexpressions","text":"Note this metaclass exemplifies a pattern that is reused by TypeDefinition, SlotDefinition and EnumDefinition metaclasses, below. For the core definition types <D> , there are a triad of 3 metaclasses in the metamodel: <D>Expression Anonymous<D>Expression <D>Definition depicted as: classDiagram D_Expression \"*\" --> AnonymousD_Expression: <boolean combinator> class D_Definition { +D_Name name } D_Definition --|> D_Expression AnonymousT_Expression --|> D_Expression For many purposes, all that is required is the Definition element. The purpose of the above abstraction is to allow composition of anonymous expressions using boolean operators. For example, we may want to refer to the union of collection of ClassDefinitions.","title":"ClassExpressions and anonymous ClassExpressions"},{"location":"specification/03schemas/#class-definition-example-functional-syntax","text":"A collection of ClassDefinition instances might look [ ClassDefinition( name=String(\"NamedThing\"), abstract=True, slots=[ String(\"id\"), String(\"name\"), ... ] ), ClassDefinition( name=String(\"Person\"), description=String(\"A person, living or dead\"), is_a=String(\"NamedThing\"), attributes=[ SlotDefinition( name=String(\"height\"), ...), SlotDefinition( name=String(\"age\"), ...) ), ... ],","title":"Class Definition Example, Functional Syntax"},{"location":"specification/03schemas/#class-definition-example-yaml","text":"The above example following the YAML serialization is: NamedThing: abstract: true slots: - id - name Person: description: A person, living or dead is_a: NamedThing attributes: height: ... age: ...","title":"Class Definition Example, YAML"},{"location":"specification/03schemas/#slotdefinition-metaclass","text":"metamodel documentation: SlotDefinition Instances of SlotDefinition are not themselves instantiable . Each assignment in a LinkML ClassDefinition instance must use a SlotDefinition from the schema.","title":"SlotDefinition Metaclass"},{"location":"specification/03schemas/#slotdefinition-normative-subset-metaslots","text":"SlotDefinition inherits from both Element and SlotExpression. A SlotDefinition must have a name . other schema elements may refer to AnonymousSlotExpression s composed using boolean operators. Any instance s of a SlotDefinition may have assignments in any of the following normative metaslots Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier slot_uri 0..1 xsd:anyURI predicate of this slot for semantic web application identifier 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container alias 0..1 xsd:string the name used for a slot in the context of its owning class multivalued 0..1 xsd:boolean true means that slot can have more than one value required 0..1 xsd:boolean true means that the slot must be present in the loaded definition recommended 0..1 xsd:boolean true means that the slot should be present in the loaded definition, but this... is_a 0..1 SlotDefinition A primary parent slot from which inheritable metaslots are propagated mixins 0..* SlotDefinition A collection of secondary parent mixin slots from which inheritable metaslots... inlined 0..1 xsd:boolean True means that keyed or identified slot appears in an outer structure by val... inlined_as_list 0..1 xsd:boolean True means that an inlined slot is represented as a list of range instances pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousSlotExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousSlotExpression holds if only one of the expressions hold none_of 0..* AnonymousSlotExpression holds if none of the expressions hold all_of 0..* AnonymousSlotExpression holds if all of the expressions hold domain 0..1 ClassDefinition defines the type of the subject of the slot inherited 0..1 xsd:boolean true means that the value of a slot is inherited by subclasses ifabsent 0..1 xsd:string function that provides a default value for the slot list_elements_unique 0..1 xsd:boolean If True, then there must be no duplicates in the elements of a multivalued sl... list_elements_ordered 0..1 xsd:boolean If True, then the order of elements of a multivalued slot is guaranteed to be... shared 0..1 xsd:boolean If True, then the relationship between the slot domain and range is many to o... key 0..1 xsd:boolean True means that the key slot(s) uniquely identify the container designates_type 0..1 xsd:boolean True means that the key slot(s) is used to determine the instantiation (types... symmetric 0..1 xsd:boolean If s is symmetric, and i reflexive 0..1 xsd:boolean If s is reflexive, then i locally_reflexive 0..1 xsd:boolean If s is locally_reflexive, then i irreflexive 0..1 xsd:boolean If s is irreflexive, then there exists no i such i asymmetric 0..1 xsd:boolean If s is antisymmetric, and i transitive 0..1 xsd:boolean If s is transitive, and i inverse 0..1 SlotDefinition indicates that any instance of d s r implies that there is also an instance o... transitive_form_of 0..1 SlotDefinition If s transitive_form_of d, then (1) s holds whenever d holds (2) s is transit... reflexive_transitive_form_of 0..1 SlotDefinition transitive_form_of including the reflexive case slot_group 0..1 SlotDefinition allows for grouping of related slots into a grouping slot that serves the rol... is_grouping_slot 0..1 xsd:boolean true if this slot is a grouping slot disjoint_with 0..* SlotDefinition Two classes are disjoint if they have no instances in common, two slots are d... union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... range 0..1 Element defines the type of the object of the slot range_expression 0..1 AnonymousClassExpression A range that is described as a boolean expression combining existing ranges enum_range 0..1 EnumExpression An inlined enumeration minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... equals_expression 0..1 xsd:string the value of the slot must equal the value of the evaluated expression minimum_cardinality 0..1 xsd:integer the minimum number of entries for a multivalued slot maximum_cardinality 0..1 xsd:integer the maximum number of entries for a multivalued slot has_member 0..1 AnonymousSlotExpression the values of the slot is multivalued with at least one member satisfying the... all_members 0..* SlotDefinition the value of the multiavlued slot is a list where all elements conform to the... abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"SlotDefinition: Normative subset metaslots"},{"location":"specification/03schemas/#slotdefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram class SlotExpression { +SlotDefinitionName range } SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: any_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: exactly_one_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: none_of SlotExpression \"1\" --> \"*\" AnonymousSlotExpression: all_of class SlotDefinition { +SlotDefinitionName name +boolean identifier +boolean key +boolean abstract +boolean mixin +boolean designates_type +SlotDefinitionName is_a +SlotDefinitionName[] mixins +ClassDefinitionName range +Decimal minimum_value +Decimal maximum_value +String equals_expression +String pattern +String string_serialization +boolean symmetric +boolean asymmetric +boolean reflexive +boolean irreflexive +boolean locally_reflexive +boolean transitive +SlotDefinition transitive_form_of +SlotDefinition reflexive_transitive_form_of +SlotDefinition inverse } SlotDefinition --|> SlotExpression: mixin SlotDefinition --|> Element: is_a SlotDefinition \"0..1\" --> SlotDefinition: is_a SlotDefinition \"*\" --> SlotDefinition: mixins","title":"SlotDefinition: Normative subset UML"},{"location":"specification/03schemas/#slot-definition-example-functional-syntax","text":"An example collection of SlotDefinitions might be: SchemaDefinition( slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"A unique identifier for an object\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... )","title":"Slot Definition Example, Functional Syntax"},{"location":"specification/03schemas/#enumdefinition-metaclass","text":"metamodel documentation: EnumDefinition Instances of EnumDefinition instances are instantiable . For example, a schema may have an enumeration with name \"JobCode\". This is an instance of an EnumDefinition, and can also be instantiated by different permissible values such as \"Forklift Driver\"","title":"EnumDefinition Metaclass"},{"location":"specification/03schemas/#enumdefinition-normative-subset-metaslots","text":"Any instance e of a EnumDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier is_a 0..1 Definition A primary parent class or slot from which inheritable metaslots are propagate... mixins 0..* Definition A collection of secondary parent classes or slots from which inheritable meta... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... enum_uri 0..1 xsd:anyURI URI of the enum that provides a semantic interpretation of the element in a l... code_set 0..1 xsd:anyURI the identifier of an enumeration code set pv_formula 0..1 PvFormulaOptions Defines the specific formula to be used to generate the permissible values permissible_values 0..* PermissibleValue A list of possible values for a slot range include 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be in... minus 0..* AnonymousEnumExpression An enum expression that yields a list of permissible values that are to be su... inherits 0..* EnumDefinition An enum definition that is used as the basis to create a new enum reachable_from 0..1 ReachabilityQuery Specifies a query for obtaining a list of permissible values based on graph r... matches 0..1 MatchQuery Specifies a match query that is used to calculate the list of permissible val... concepts 0..* xsd:anyURI A list of identifiers that are used to construct a set of permissible values abstract 0..1 xsd:boolean Indicates the class or slot cannot be directly instantiated and is intended f... mixin 0..1 xsd:boolean Indicates the class or slot is not intended to inherited from without being a... string_serialization 0..1 xsd:string Used on a slot that stores the string serialization of the containing object id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"EnumDefinition: Normative subset metaslots"},{"location":"specification/03schemas/#enumdefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram class EnumExpression { +TypeDefinitionName range } EnumExpression \"*\" --> AnonymousEnumExpression: any_of EnumExpression \"*\" --> AnonymousEnumExpression: exactly_one_of EnumExpression \"*\" --> AnonymousEnumExpression: none_of EnumExpression \"*\" --> AnonymousEnumExpression: all_of class EnumDefinition { +EnumDefinitionName name } EnumDefinition \"*\" --> PermissibleValue: permissible_values class PermissibleValue { +String text +String description +UriOrCurie meaning }","title":"EnumDefinition: Normative subset UML"},{"location":"specification/03schemas/#typedefinition-metaclass","text":"metamodel documentation: TypeDefinition Instances of TypeDefinition are themselves instantiable . For example, a schema might contain a TypeDefinition with name \"PhoneNumber\". This is an instance of TypeDefinition, and can itself be instantiated by individual phone numbers.","title":"TypeDefinition Metaclass"},{"location":"specification/03schemas/#typedefinition-normative-subset-metaslots","text":"Any instance t of a TypeDefinition may have assignments in any of the following normative metaslots: Name Cardinality and Range Description name 1..1 xsd:string the unique name of the element within the context of the schema identifier type_uri 0..1 xsd:anyURI The uri that defines the possible values for the type definition typeof 0..1 TypeDefinition Names a parent type base 0..1 xsd:string python base type that implements this type definition repr 0..1 xsd:string the name of the python object that implements this type definition pattern 0..1 xsd:string the string value of the slot must conform to this regular expression expresse... rank 0..1 xsd:integer the relative order in which the element occurs, lower values are given preced... any_of 0..* AnonymousTypeExpression holds if at least one of the expressions hold exactly_one_of 0..* AnonymousTypeExpression holds if only one of the expressions hold none_of 0..* AnonymousTypeExpression holds if none of the expressions hold all_of 0..* AnonymousTypeExpression holds if all of the expressions hold union_of 0..* TypeDefinition indicates that the domain element consists exactly of the members of the elem... structured_pattern 0..1 PatternExpression the string value of the slot must conform to the regular expression in the pa... implicit_prefix 0..1 xsd:string Causes the slot value to be interpreted as a uriorcurie after prefixing with ... equals_string 0..1 xsd:string the slot must have range string and the value of the slot must equal the spec... equals_string_in 0..* xsd:string the slot must have range string and the value of the slot must equal one of t... minimum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or higher th... maximum_value 0..1 xsd:integer for slots with ranges of type number, the value must be equal to or lowe than... id_prefixes 0..* xsd:string the identifier of this class or slot must begin with the URIs referenced by t... from_schema 0..1 xsd:anyURI id of the schema that defined the element","title":"TypeDefinition: Normative subset metaslots"},{"location":"specification/03schemas/#typedefinition-normative-subset-uml","text":"A subset of the above normative slots are depicted as follows: classDiagram class TypeExpression { +TypeDefinitionName range } TypeExpression \"*\" --> AnonymousTypeExpression: any_of TypeExpression \"*\" --> AnonymousTypeExpression: exactly_one_of TypeExpression \"*\" --> AnonymousTypeExpression: none_of TypeExpression \"*\" --> AnonymousTypeExpression: all_of AnonymousTypeExpression --|> TypeExpression TypeDefinition --|> TypeExpression class TypeDefinition { +TypeDefinitionName name +TypeDefinitionName typeof +TypeDefinitionName[] mixins +Uri uri +String base +String repr } TypeDefinition --|> TypeExpression: mixin TypeDefinition --|> Element: is_a","title":"TypeDefinition: Normative subset UML"},{"location":"specification/03schemas/#default-types","text":"LinkML includes a default schema of types Schema: https://w3id.org/linkml/types.yaml . Documentation: https://linkml.io/linkml-model/docs/#types These are: Boolean (Bool) - A binary (true or false) value Date (XSDDate) - a date (year, month and day) in an idealized calendar Datetime (XSDDateTime) - The combination of a date and time Decimal (Decimal) - A real number with arbitrary precision that conforms to the xsd:decimal specification Double (float) - A real number that conforms to the xsd:double specification Float (float) - A real number that conforms to the xsd:float specification Integer (int) - An integer Ncname (NCName) - Prefix part of CURIE Nodeidentifier (NodeIdentifier) - A URI, CURIE or BNODE that represents a node in a model. Objectidentifier (ElementIdentifier) - A URI or CURIE that represents an object in the model. String (str) - A character string Time (XSDTime) - A time object represents a (local) time of day, independent of any particular day Uri (URI) - a complete URI Uriorcurie (URIorCURIE) - a URI or a CURIE The type schema can be imported, used directly, or used as a basis to extend new types","title":"Default Types"},{"location":"specification/03schemas/#classdefinitionreference-metaclass","text":"ClassDefinitionReferences are primitive elements that provide a way to reference a particular instances. ClassDefinitionReferences are not part of the asserted schema but are derived from derivation rules -- see next section","title":"ClassDefinitionReference Metaclass"},{"location":"specification/03schemas/#prefix-metaclass","text":"metamodel documentation: Prefix A schema can contain any number of prefixes. Each prefix maps a short name such as \"owl\" to a URI. These are used to determine the canonical URI for any element.","title":"Prefix Metaclass"},{"location":"specification/03schemas/#prefix-normative-subset-metaslots","text":"Name Cardinality and Range Description prefix_prefix 0..1 xsd:string the nsname (sans ':' for a given prefix) prefix_reference 1..1 xsd:anyURI A URI associated with a given prefix","title":"Prefix: Normative subset metaslots"},{"location":"specification/03schemas/#prefix-normative-subset-uml","text":"classDiagram SchemaDefinition \"*\" --> \"*\" Prefix: prefixes class Prefix { +Ncname prefix_prefix +Uri prefix_reference }","title":"Prefix: Normative subset UML"},{"location":"specification/03schemas/#prefix-example-functional-syntax","text":"SchemaDefinition( prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ])","title":"Prefix Example, Functional Syntax"},{"location":"specification/03schemas/#prefix-example-yaml","text":"prefixes: linkml: https://w3id.org/linkml/ schema: http://schema.org/ wgs: http://www.w3.org/2003/01/geo/wgs84_pos# qudt: http://qudt.org/1.1/schema/qudt#","title":"Prefix Example, YAML"},{"location":"specification/03schemas/#complete-schema-example-informative","text":"For example, consider a schema that models representations of individual people and organizations they belong to may include a class definition Person , and slot definitions for name , address , relationships and so on. This might be depicted in UML as: classDiagram Person \"0\" --> \"*\" Person: knows class Person { +String id +String name +Float height +Date date_of_birth +JobCode occupation } This would have a YAML serialization (see section 6): classes: Person: description: ... slots: - id - name - height - date_of_birth - occupation - knows slots: id: identifier: true range: string name: range: string date_of_birth: range: date height: range: float occupation: range: JobCode knows: range: Person multivalued: true enums: JobCode: permissible_values: ForkliftDriver: ...: types: date: ... Because schemas, are instances of the metamodel, this hypothetical schema may be serialized in functional instance syntax as follows: SchemaDefinition( id=String(\"http://example.org/organization\"), name=String(\"organization\"), prefixes=[ Prefix(prefix_prefix=Ncname(\"linkml\") prefix_reference=Uri(\"https://w3id.org/linkml/\")), Prefix(prefix_prefix=Ncname(\"org\") prefix_reference=Uri(\"http://example.org/organization/\")), Prefix(prefix_prefix=Ncname(\"schema\") prefix_reference=Uri(\"http://schema.org\")), Prefix(prefix_prefix=Ncname(\"wgs\") prefix_reference=Uri(\"http://www.w3.org/2003/01/geo/wgs84_pos#\")), Prefix(prefix_prefix=Ncname(\"qudt\") prefix_reference=Uri(\"http://qudt.org/1.1/schema/qudt#\")) ], default_prefix=String(\"org\"), imports=[ Uriorcurie(\"linkml:types\") ], classes=[ ClassDefinition( name=String(\"Person\"), slots=[ String(\"id\"), String(\"name\"), String(\"height\"), String(\"age\"), String(\"knows\"), String(\"job\"), ... ] ), ClassDefinition( name=String(\"Organization\"), slots=[ String(\"id\"), ... ] ), ... ], slots=[ SlotDefinition( name=String(\"id\"), identifier=Boolean(True), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"name\"), description=String(\"...\"), range=String(\"String\"), ... ), SlotDefinition( name=String(\"occupation\"), description=String(\"...\"), range=String(\"JobCode\"), ... ), SlotDefinition( name=String(\"date_of_birth\"), description=String(\"...\"), range=String(\"Date\"), ... ), SlotDefinition( name=String(\"knows\"), description=String(\"...\"), range=String(\"Person\"), multivalued=Boolean(True), ... ) ], enums=[ EnumDefinition( name=String(\"JobCode\"), permissible_values=[...], ) ], types=[ TypeDefinition( name=String(\"Date\"), ... ), TypeDefinition( name=String(\"String\"), ... ), ] )","title":"Complete Schema Example (Informative)"},{"location":"specification/04derived-schemas/","text":"Derived Schemas This section describes rules that can be applied to a schema to obtain a derived (aka induced ) schema. The derived schema can be materialized, or it may be present as a view onto a schema. A derived view may also be referred to as an inferred or induced view. flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation Derivations happen via rules that are specified below, using a set of convenience functions Conventions We use m to denote the input or asserted schema (model), and m D to denote the derived schema Functions Function: GetIdentifierSlot The function GetIdentifierSlot ( c ) takes a ClassDefinition or ClassDefinitionName as input and returns: the name of a derived attribute s in c where s.identifier is True in m D None if there is no such slot An error if there are multiple such slots Function: Closure The function Closure ( x , s ) takes as input an element x and a metaslot s and returns the mathematical closure of s where s is treated as a relation between instances i and j that holds when either: s is not multivalued: i.s = j s is multivalued: j member-of i.s The ReflexiveClosure includes x Function: Parents Parents itself is the union of is_a and mixins . Parents (x) = {e : e = x.is_a \\/ e in x.mixins } Function: Ancestors The function Ancestors ( x ) returns the Closure of the Parents function applied to x . The function ReflexiveAncestors uses the ReflexiveClosure . Derivation Rules Rule: Model Imports Each model imports zero to many imports, indicated by the SchemaDefinition . imports metaslot. m D is set to be the union of all schema elements from the ReflexiveClosure of m.imports When copying an element x from an import into m D , the name x.name must be unique - if the same name has been used in another model, the derivation procedure fails, and an error is thrown. Note : If two or more models import the same target (e.g. m1 imports m2 and m3 and m2 imports m3 ), m3 will be only be resolved once. Note : Two models are considered to be \"identical\" if they both have the same id . If m2 and m3 both have id: http://models-r.us/modelA , it is assumed that, despite the different location, they represent the same thing. LinkML will check the model version field and will raise an error if m2 has version: 1.0.0 and m3 has version: 1.0.1 Each imported module must be resolved - i.e the value of the import slot is mapped to a location on disk or on the web Rule: fromschema elements Each element in the schema as assigned a metaslot fromschema value. This is the value of the id of the schema in which that element is defined. This is preserved over imports, such that if m imports m2 , and m2 defines a class c , then m D [c].fromschema = m2 Rule: Applicable Slot Names The set of applicable slot names for a class c are determined by taking the union of: The names of all values of x.attributes The names of all values of x.slots For all x in ReflexiveAncestors(c) Rule: Derived Attributes Derived attributes can be calculated for every applicable slot name for any class c c.attributes[s] = DerivedAttributes(c,s) This is the combination of asserted attributes for c, as well as asserted attributes for ancestors of c, as well as the SlotDefinition corresponding to that attribute, together with any overrides specified by slot_usage in c and ancestors of c attributes asserted directly in c.attributes in the base schema attributes derived from each SlotDefinition s in c.slots by looking up s in m D .slots and copying the slot-value assignments from these SlotDefinitions overriding these slot-value assignments with any slot-value assignments provided by c.slot_usage[s] inheriting from parents of c using precedence rules inheriting from parents of s The precedence rules for derived attributes are as follows: If a metaslot s is declared multivalued then when copying s from a parent to a child, the values are appended. If a metaslot s is declared multivalued if a slot is multi valued then copying will append, unless the element already exists. if the slot is single valued, and intersection rules can be applied to the slot, then these are performed on all values if the slot is single valued, and intersection rules cannot be applied to the slot, then the following precedence rules are applied: metaslot values from slot_usage take the highest priority metaslot values from the slot definition take the next highest priority direct mixins take the next highest priority. where multiple direct mixins are provided as a list, the last element takes highest priority direct is_as take the next highest priority the above two rules are applied one level up, and then recursively applied Intersection rules metaslot rule maximum_value min(v1,v2) minimum_value max(v1,v2) pattern TBD range IF subsumes(v1,v2) then v2 ELSE IF subsumes(v2,v1) then v2 ELSE UNDEFINED If the result of applying any intersection rule is UNDEFINED then we fall back on precedence rules Rule: Default Range For all attributes in the derived model, if a range is not assigned using the above method, then the range is assigned a value corresponding to the value of default_range for the schema in which the slot is defined. Rule: Derived Class and Slot URIs For each class or slot, if a class_uri or slot_uri is not specified, then this is derived by concatenating m.default_prefix with the CURIE separator : followed by the SafeUpperCamelCase encoding of the name of that class or slot definition Rule: Generation of patterns from structured patterns For any slot s , if s.structured_pattern = p and p is not None then s.pattern is assigned a value based on the following procedure: If p.interpolated is True, then the value of s.syntax is interpolated , by replacing all occurrences of braced text {VAR} with the value of VAR . The value of VAR is obtained using m.settings[VAR] , where m is the schema in which p is introduced. If p.interpolated is not True, then the value of s.syntax is used directly. If p.partial_match is not True, then s.pattern has a '^' character inserted at the begining and a '$' character inserted as the end. Rule: Generation of ClassDefinitionReferences For every ClassDefinition c , if there exists a slot s such that s.identifer=True , then a corresponding ClassDefinitionReference r is generated. r.name is assigned to be the concatenation of c.name and s.name r functionally serves as a foreign key to instances of r , and allows for non-inlined representation of instance references in tree-based formats such as JSON. Structural Conformance Rules Rule: Each referenced entity must be present Every ClassDefinition , ClassDefinitionReference , SlotDefinitionReference , EnumDefinitionReference , and TypeDefinitionReference must be resolvable within m D However, not every element needs to be referenced. For example, it is valid to have a list of SlotDefinitions that are never used in m D . ClassDefinition Structural Conformance Rules Each c in m D .classes must conform to the rules below: c must be an instance of a ClassDefinition c must have a unique name c.name , and this name must not be shared by any other class or element in m D c lists permissible slots in c.slots , the range of this is a reference to a SlotDefinition in m D .slots c defines how slots are used in the context of c via a collection of SlotDefinitions specified in c.slot_usage c may define local slots using c.attributes , the value of this is a. collection of SlotDefinitions c may have certain boolean properties defined such as c.mixin and c.abstract c must have exactly one value for c.class_uri in m D , and the value must be an instance of the builtin type UriOrCurie c may have parent ClassDefinitions defined via c.is_a and c.mixins the value of c.is_a must be a ClassDefinitionReference the value of c.mixins must be a collection of ClassDefinitonReferences For any parent p of c , if p.mixin is True, then c.mixin SHOULD be True c includes additional rules in c.rules and c.classificiation_rules c may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM SlotDefinition Structural Conformance Rules Each s in m D .slots must conform to the rules below: s must be an instance of a SlotDefinition s must have a unique name s.name , and this name must not be shared by any other type or element s must have a range specified via s.range in m D s may have an assignment s.identifier which is True if s plays the role of a unique identifier s may have certain boolean properties defined such as s.mixin and s.abstract s must have exactly one value for s.slot_uri in m D , and the value must be an instance of the builtin type UriOrCurie s may have parent SlotDefinitions defined via s.is_a and s.mixins the value of s.is_a must be a SlotDefinitionReference the value of s.mixins must be a collection of SlotDefinitionReference s For any parent p of s , if p.mixin is True, then s.mixin SHOULD be True s may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM TypeDefinition Structural Conformance Rules Each s in m D .types must conform to the rules below: t must be an instance of a TypeDefinition t must have a unique name t.name , and this name must not be shared by any other type or element t must have a mapping to an xsd type provided via t.uri in m D t may have a parent type declared via t.typeof t may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM EnumDefinition Structural Conformance Rules Each e in m D .enums must conform to the rules below: e must be an instance of a EnumDefinition e must have a unique name e.name , and this name must not be shared by any other enum or element e lists all static permissible values via e.permissible_values , the value of which is a list of instances of the MM class PermissibleValue e may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM ClassDefinitionReference Structural Conformance Rules Each r in m D .class_references must conform to the rules below: r must be an instance of a ClassDefinitionReference r must have a unique name r.name , and this name must not be shared by any other type or element Metamodel Conformance Rules Both the asserted and derived schema should be valid instances of the LinkML metamodel MM using the instance validation rules described in the next section","title":"Derived Schemas"},{"location":"specification/04derived-schemas/#derived-schemas","text":"This section describes rules that can be applied to a schema to obtain a derived (aka induced ) schema. The derived schema can be materialized, or it may be present as a view onto a schema. A derived view may also be referred to as an inferred or induced view. flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation Derivations happen via rules that are specified below, using a set of convenience functions","title":"Derived Schemas"},{"location":"specification/04derived-schemas/#conventions","text":"We use m to denote the input or asserted schema (model), and m D to denote the derived schema","title":"Conventions"},{"location":"specification/04derived-schemas/#functions","text":"","title":"Functions"},{"location":"specification/04derived-schemas/#function-getidentifierslot","text":"The function GetIdentifierSlot ( c ) takes a ClassDefinition or ClassDefinitionName as input and returns: the name of a derived attribute s in c where s.identifier is True in m D None if there is no such slot An error if there are multiple such slots","title":"Function: GetIdentifierSlot"},{"location":"specification/04derived-schemas/#function-closure","text":"The function Closure ( x , s ) takes as input an element x and a metaslot s and returns the mathematical closure of s where s is treated as a relation between instances i and j that holds when either: s is not multivalued: i.s = j s is multivalued: j member-of i.s The ReflexiveClosure includes x","title":"Function: Closure"},{"location":"specification/04derived-schemas/#function-parents","text":"Parents itself is the union of is_a and mixins . Parents (x) = {e : e = x.is_a \\/ e in x.mixins }","title":"Function: Parents"},{"location":"specification/04derived-schemas/#function-ancestors","text":"The function Ancestors ( x ) returns the Closure of the Parents function applied to x . The function ReflexiveAncestors uses the ReflexiveClosure .","title":"Function: Ancestors"},{"location":"specification/04derived-schemas/#derivation-rules","text":"","title":"Derivation Rules"},{"location":"specification/04derived-schemas/#rule-model-imports","text":"Each model imports zero to many imports, indicated by the SchemaDefinition . imports metaslot. m D is set to be the union of all schema elements from the ReflexiveClosure of m.imports When copying an element x from an import into m D , the name x.name must be unique - if the same name has been used in another model, the derivation procedure fails, and an error is thrown. Note : If two or more models import the same target (e.g. m1 imports m2 and m3 and m2 imports m3 ), m3 will be only be resolved once. Note : Two models are considered to be \"identical\" if they both have the same id . If m2 and m3 both have id: http://models-r.us/modelA , it is assumed that, despite the different location, they represent the same thing. LinkML will check the model version field and will raise an error if m2 has version: 1.0.0 and m3 has version: 1.0.1 Each imported module must be resolved - i.e the value of the import slot is mapped to a location on disk or on the web","title":"Rule: Model Imports"},{"location":"specification/04derived-schemas/#rule-fromschema-elements","text":"Each element in the schema as assigned a metaslot fromschema value. This is the value of the id of the schema in which that element is defined. This is preserved over imports, such that if m imports m2 , and m2 defines a class c , then m D [c].fromschema = m2","title":"Rule: fromschema elements"},{"location":"specification/04derived-schemas/#rule-applicable-slot-names","text":"The set of applicable slot names for a class c are determined by taking the union of: The names of all values of x.attributes The names of all values of x.slots For all x in ReflexiveAncestors(c)","title":"Rule: Applicable Slot Names"},{"location":"specification/04derived-schemas/#rule-derived-attributes","text":"Derived attributes can be calculated for every applicable slot name for any class c c.attributes[s] = DerivedAttributes(c,s) This is the combination of asserted attributes for c, as well as asserted attributes for ancestors of c, as well as the SlotDefinition corresponding to that attribute, together with any overrides specified by slot_usage in c and ancestors of c attributes asserted directly in c.attributes in the base schema attributes derived from each SlotDefinition s in c.slots by looking up s in m D .slots and copying the slot-value assignments from these SlotDefinitions overriding these slot-value assignments with any slot-value assignments provided by c.slot_usage[s] inheriting from parents of c using precedence rules inheriting from parents of s The precedence rules for derived attributes are as follows: If a metaslot s is declared multivalued then when copying s from a parent to a child, the values are appended. If a metaslot s is declared multivalued if a slot is multi valued then copying will append, unless the element already exists. if the slot is single valued, and intersection rules can be applied to the slot, then these are performed on all values if the slot is single valued, and intersection rules cannot be applied to the slot, then the following precedence rules are applied: metaslot values from slot_usage take the highest priority metaslot values from the slot definition take the next highest priority direct mixins take the next highest priority. where multiple direct mixins are provided as a list, the last element takes highest priority direct is_as take the next highest priority the above two rules are applied one level up, and then recursively applied Intersection rules metaslot rule maximum_value min(v1,v2) minimum_value max(v1,v2) pattern TBD range IF subsumes(v1,v2) then v2 ELSE IF subsumes(v2,v1) then v2 ELSE UNDEFINED If the result of applying any intersection rule is UNDEFINED then we fall back on precedence rules","title":"Rule: Derived Attributes"},{"location":"specification/04derived-schemas/#rule-default-range","text":"For all attributes in the derived model, if a range is not assigned using the above method, then the range is assigned a value corresponding to the value of default_range for the schema in which the slot is defined.","title":"Rule: Default Range"},{"location":"specification/04derived-schemas/#rule-derived-class-and-slot-uris","text":"For each class or slot, if a class_uri or slot_uri is not specified, then this is derived by concatenating m.default_prefix with the CURIE separator : followed by the SafeUpperCamelCase encoding of the name of that class or slot definition","title":"Rule: Derived Class and Slot URIs"},{"location":"specification/04derived-schemas/#rule-generation-of-patterns-from-structured-patterns","text":"For any slot s , if s.structured_pattern = p and p is not None then s.pattern is assigned a value based on the following procedure: If p.interpolated is True, then the value of s.syntax is interpolated , by replacing all occurrences of braced text {VAR} with the value of VAR . The value of VAR is obtained using m.settings[VAR] , where m is the schema in which p is introduced. If p.interpolated is not True, then the value of s.syntax is used directly. If p.partial_match is not True, then s.pattern has a '^' character inserted at the begining and a '$' character inserted as the end.","title":"Rule: Generation of patterns from structured patterns"},{"location":"specification/04derived-schemas/#rule-generation-of-classdefinitionreferences","text":"For every ClassDefinition c , if there exists a slot s such that s.identifer=True , then a corresponding ClassDefinitionReference r is generated. r.name is assigned to be the concatenation of c.name and s.name r functionally serves as a foreign key to instances of r , and allows for non-inlined representation of instance references in tree-based formats such as JSON.","title":"Rule: Generation of ClassDefinitionReferences"},{"location":"specification/04derived-schemas/#structural-conformance-rules","text":"","title":"Structural Conformance Rules"},{"location":"specification/04derived-schemas/#rule-each-referenced-entity-must-be-present","text":"Every ClassDefinition , ClassDefinitionReference , SlotDefinitionReference , EnumDefinitionReference , and TypeDefinitionReference must be resolvable within m D However, not every element needs to be referenced. For example, it is valid to have a list of SlotDefinitions that are never used in m D .","title":"Rule: Each referenced entity must be present"},{"location":"specification/04derived-schemas/#classdefinition-structural-conformance-rules","text":"Each c in m D .classes must conform to the rules below: c must be an instance of a ClassDefinition c must have a unique name c.name , and this name must not be shared by any other class or element in m D c lists permissible slots in c.slots , the range of this is a reference to a SlotDefinition in m D .slots c defines how slots are used in the context of c via a collection of SlotDefinitions specified in c.slot_usage c may define local slots using c.attributes , the value of this is a. collection of SlotDefinitions c may have certain boolean properties defined such as c.mixin and c.abstract c must have exactly one value for c.class_uri in m D , and the value must be an instance of the builtin type UriOrCurie c may have parent ClassDefinitions defined via c.is_a and c.mixins the value of c.is_a must be a ClassDefinitionReference the value of c.mixins must be a collection of ClassDefinitonReferences For any parent p of c , if p.mixin is True, then c.mixin SHOULD be True c includes additional rules in c.rules and c.classificiation_rules c may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"ClassDefinition Structural Conformance Rules"},{"location":"specification/04derived-schemas/#slotdefinition-structural-conformance-rules","text":"Each s in m D .slots must conform to the rules below: s must be an instance of a SlotDefinition s must have a unique name s.name , and this name must not be shared by any other type or element s must have a range specified via s.range in m D s may have an assignment s.identifier which is True if s plays the role of a unique identifier s may have certain boolean properties defined such as s.mixin and s.abstract s must have exactly one value for s.slot_uri in m D , and the value must be an instance of the builtin type UriOrCurie s may have parent SlotDefinitions defined via s.is_a and s.mixins the value of s.is_a must be a SlotDefinitionReference the value of s.mixins must be a collection of SlotDefinitionReference s For any parent p of s , if p.mixin is True, then s.mixin SHOULD be True s may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"SlotDefinition Structural Conformance Rules"},{"location":"specification/04derived-schemas/#typedefinition-structural-conformance-rules","text":"Each s in m D .types must conform to the rules below: t must be an instance of a TypeDefinition t must have a unique name t.name , and this name must not be shared by any other type or element t must have a mapping to an xsd type provided via t.uri in m D t may have a parent type declared via t.typeof t may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"TypeDefinition Structural Conformance Rules"},{"location":"specification/04derived-schemas/#enumdefinition-structural-conformance-rules","text":"Each e in m D .enums must conform to the rules below: e must be an instance of a EnumDefinition e must have a unique name e.name , and this name must not be shared by any other enum or element e lists all static permissible values via e.permissible_values , the value of which is a list of instances of the MM class PermissibleValue e may have any number of additional slot-value assignments consistent with the validation rules provided here with the metamodel MM","title":"EnumDefinition Structural Conformance Rules"},{"location":"specification/04derived-schemas/#classdefinitionreference-structural-conformance-rules","text":"Each r in m D .class_references must conform to the rules below: r must be an instance of a ClassDefinitionReference r must have a unique name r.name , and this name must not be shared by any other type or element","title":"ClassDefinitionReference Structural Conformance Rules"},{"location":"specification/04derived-schemas/#metamodel-conformance-rules","text":"Both the asserted and derived schema should be valid instances of the LinkML metamodel MM using the instance validation rules described in the next section","title":"Metamodel Conformance Rules"},{"location":"specification/05validation/","text":"Validation using Schemas Validation is a procedure that takes as input: A LinkML instance i , where i is to be validated A LinkML instance root . This MUST contain i and MAY be the same as i A schema m The validation procedure will produce output that can be used to determine if the instance is structurally and semantically valid according to the schema. The formal specification of the validation procedure takes as input a derived schema m D : flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation I[Instance] --> Validation{Validation Procedure} Validation -->|produces| Results[Validation Results] Mstar --> Validation Actual implementations may choose to perform this composition or work directly on the asserted schema. The following holds for any validation procedure: The output MUST include a boolean slot indicating whether the input can be demonstrated to be false The output SHOULD include additional information about the nature of all problems encountered. The output SHOULD be conformant with the LinkML validation schema. The output MAY also return cases where recommendations are not adhered to The output MAY also be combined with parsing to yield the precise location (i.e. line numbers) in the source serialization document where problems are found. The procedure MAY restrict validation to defined subsets (profiles) of the Metamodel The procedure SHOULD return in its payload an indication of which profile and version is used. Validation procedure for instances The validation procedure is to first take the metaclass that is instantiated by the type of the instance i , and apply one of the 4 checks below, with each check performing its own sub-rules. The ClassDefinition check is recursive , checking each slot-value assignment. This means a check on any instance will always validate the full instance tree. Validation of ClassDefinitions Given an instance i of a ClassDefinition: ClassDefinitionName ( Assignments ) Where Assignments is a collection of length N , with index i..N and members slot_i=value_i , and ClassDefinitionName is the name of a ClassDefinition in m D , such that C =m D .classes[ClassDefinitionName] Rule: Assignment values must be valid for each slot=value assignment in Assignments , the validation procedure is performed on value , with root remaining the same Rule: ClassDefinition instances must instantiate a class in the schema ClassDefinitionName MUST be the name of a ClassDefinition in m D C is assigned to be the value of m D [ClassDefinitionName] Assignments is assigned to be the value of C.attributes (see the previous section) C SHOULD have all the following properties: C.deprecated SHOULD be None C.abstract SHOULD NOT be True C.mixin SHOULD NOT be True Rule: identifiers must be unique We define a procedure IdVal ( i ) which yields the value of i.<identifier_slot> where identifier_slot is the slot n Assignments with metaslot assignment identifier = True If there is no such slot then **IdVal**( i`) is None and this check is ignored. i is invalid if there exists another instance j such that j is reachable from root , and IdVal ( i )= IdVal ( j ) and i and j are distinct. Rule: All assignments must be to permitted slots For each s=value assignment in < Assignment1 >, < Assignment2 >, ..., < AssignmentN >: s must be in Assignments Rule: All required slots must be specified For each slot s in Assignments , if s.required=True , then i.<s> must be neither None nor the empty collection [] Rule: All recommended slots should be specified For each slot s in Assignments , if s.recommended=True , then i.<s> should be neither None nor the empty collection [] If this condition is not met, this is considered a warning rather than invalidity Rule: Assigned values must conform to multivalued cardinality For each slot s in Assignments , if s.multivalued is True, then i.<s> must be a collection or None If s.multivalued is False, then i.<s> must not be a collection Rule: values should be within stated bounds For each slot s in Assignments , if s.maximum_value is not None, then i.<s> must be a number and must be less that or equal to the maximum value if s.minimum_value is not None, then i.<s> must be a number and must be greater that or equal to the minimum value Rule: values should equal evaluable expression For each slot s in Assignments , if s.equals_expression is not None, then i.<s> must equal the value of Eval(s.equals_expression) . See section on expression language for details of syntax. Note: this rule can be executed in inference mode Rule: values should equal string_serialization For each slot s in Assignments , if s.string_serialization is not None, then i.<s> must equal the value of Stringify(s.string_serialization) . See section on expression language for details of syntax. Rule: values should equal regular expression patterns Note: this rule can be executed in inference mode Range class instantiation check For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.classes , then s.range must be in ReflexiveAncestors(Type(i.<s>)) Additional checks MAY be performed based on whether s.inlined is True if s.inlined , then i.<s> SHOULD NOT be a Reference if s.inlined is False, then EITHER: i.<s> SHOULD be a Reference OR i.<s> instantiates a class R such that R has no slot rs that is declared to be an identifier. i.e. rs.identifier = True Boolean combinations of expressions There are 4 boolean operator metaslots: any_of exactly_one_of none_of all_of These can apply to classes, slots, types, or enums. The range is always a list of operand expressions of the same type. In all cases, the semantics are as follows: any_of: true if there exists a member of the operands that evaluates to true for empty lists this is always false exactly_one_of: true if there exists a member of the operands that evaluates to true, and all other members evaluate to false for empty lists this is always false none_of: true if there does not exist a member of the operands that evaluates to true for empty lists this is always true for lists of length 1 this is the same as the logical NOT operator for lists of length 2 this is the same as the logical XOR operator all_of: true if there are no members that evaluate to false for empty lists this is always true range expression checks For each slot s in Assignments , if i.<s> is not None, and RE = s.range_expression is not None, then a check CE ( x ) is performed on i.<s> Rule evaluation For each rule r in C .rules: if r.preconditions is None or r.preconditions is satisfied, then r.postconditions are applied Classification Rule evaluation type designator checks Validation of TypeDefinitions For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.types , where i.<s> = *T*( **AtomicValue** ) must match s.range , here T.uri is used to determine the type: for xsd floats, doubles, and decimals, AtomicValue must be a decimal- for xsd floats, doubles, and decimals, AtomicValue must be a decimal for xsd ints, AtomicValue must be an Integer for xsd dates, datetimes, and times, AtomicValue must be a string conforming to the relevant ISO type for xsd booleans, AtomicValue must be True or False Validation of EnumDefinitions For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.enums , then i.<s> must be equal to pv.text for some pv in m*.enums[s.range] Inference of new values","title":"Instance Validation"},{"location":"specification/05validation/#validation-using-schemas","text":"Validation is a procedure that takes as input: A LinkML instance i , where i is to be validated A LinkML instance root . This MUST contain i and MAY be the same as i A schema m The validation procedure will produce output that can be used to determine if the instance is structurally and semantically valid according to the schema. The formal specification of the validation procedure takes as input a derived schema m D : flowchart TD M[Asserted Schema] --> Derivation{Derivation Procedure} Derivation -->|derives| Mstar[Derived Schema] R[Rules] --> Derivation I[Instance] --> Validation{Validation Procedure} Validation -->|produces| Results[Validation Results] Mstar --> Validation Actual implementations may choose to perform this composition or work directly on the asserted schema. The following holds for any validation procedure: The output MUST include a boolean slot indicating whether the input can be demonstrated to be false The output SHOULD include additional information about the nature of all problems encountered. The output SHOULD be conformant with the LinkML validation schema. The output MAY also return cases where recommendations are not adhered to The output MAY also be combined with parsing to yield the precise location (i.e. line numbers) in the source serialization document where problems are found. The procedure MAY restrict validation to defined subsets (profiles) of the Metamodel The procedure SHOULD return in its payload an indication of which profile and version is used.","title":"Validation using Schemas"},{"location":"specification/05validation/#validation-procedure-for-instances","text":"The validation procedure is to first take the metaclass that is instantiated by the type of the instance i , and apply one of the 4 checks below, with each check performing its own sub-rules. The ClassDefinition check is recursive , checking each slot-value assignment. This means a check on any instance will always validate the full instance tree.","title":"Validation procedure for instances"},{"location":"specification/05validation/#validation-of-classdefinitions","text":"Given an instance i of a ClassDefinition: ClassDefinitionName ( Assignments ) Where Assignments is a collection of length N , with index i..N and members slot_i=value_i , and ClassDefinitionName is the name of a ClassDefinition in m D , such that C =m D .classes[ClassDefinitionName]","title":"Validation of ClassDefinitions"},{"location":"specification/05validation/#rule-assignment-values-must-be-valid","text":"for each slot=value assignment in Assignments , the validation procedure is performed on value , with root remaining the same","title":"Rule: Assignment values must be valid"},{"location":"specification/05validation/#rule-classdefinition-instances-must-instantiate-a-class-in-the-schema","text":"ClassDefinitionName MUST be the name of a ClassDefinition in m D C is assigned to be the value of m D [ClassDefinitionName] Assignments is assigned to be the value of C.attributes (see the previous section) C SHOULD have all the following properties: C.deprecated SHOULD be None C.abstract SHOULD NOT be True C.mixin SHOULD NOT be True","title":"Rule: ClassDefinition instances must instantiate a class in the schema"},{"location":"specification/05validation/#rule-identifiers-must-be-unique","text":"We define a procedure IdVal ( i ) which yields the value of i.<identifier_slot> where identifier_slot is the slot n Assignments with metaslot assignment identifier = True If there is no such slot then **IdVal**( i`) is None and this check is ignored. i is invalid if there exists another instance j such that j is reachable from root , and IdVal ( i )= IdVal ( j ) and i and j are distinct.","title":"Rule: identifiers must be unique"},{"location":"specification/05validation/#rule-all-assignments-must-be-to-permitted-slots","text":"For each s=value assignment in < Assignment1 >, < Assignment2 >, ..., < AssignmentN >: s must be in Assignments","title":"Rule: All assignments must be to permitted slots"},{"location":"specification/05validation/#rule-all-required-slots-must-be-specified","text":"For each slot s in Assignments , if s.required=True , then i.<s> must be neither None nor the empty collection []","title":"Rule: All required slots must be specified"},{"location":"specification/05validation/#rule-all-recommended-slots-should-be-specified","text":"For each slot s in Assignments , if s.recommended=True , then i.<s> should be neither None nor the empty collection [] If this condition is not met, this is considered a warning rather than invalidity","title":"Rule: All recommended slots should be specified"},{"location":"specification/05validation/#rule-assigned-values-must-conform-to-multivalued-cardinality","text":"For each slot s in Assignments , if s.multivalued is True, then i.<s> must be a collection or None If s.multivalued is False, then i.<s> must not be a collection","title":"Rule: Assigned values must conform to multivalued cardinality"},{"location":"specification/05validation/#rule-values-should-be-within-stated-bounds","text":"For each slot s in Assignments , if s.maximum_value is not None, then i.<s> must be a number and must be less that or equal to the maximum value if s.minimum_value is not None, then i.<s> must be a number and must be greater that or equal to the minimum value","title":"Rule: values should be within stated bounds"},{"location":"specification/05validation/#rule-values-should-equal-evaluable-expression","text":"For each slot s in Assignments , if s.equals_expression is not None, then i.<s> must equal the value of Eval(s.equals_expression) . See section on expression language for details of syntax. Note: this rule can be executed in inference mode","title":"Rule: values should equal evaluable expression"},{"location":"specification/05validation/#rule-values-should-equal-string_serialization","text":"For each slot s in Assignments , if s.string_serialization is not None, then i.<s> must equal the value of Stringify(s.string_serialization) . See section on expression language for details of syntax.","title":"Rule: values should equal string_serialization"},{"location":"specification/05validation/#rule-values-should-equal-regular-expression-patterns","text":"Note: this rule can be executed in inference mode","title":"Rule: values should equal regular expression patterns"},{"location":"specification/05validation/#range-class-instantiation-check","text":"For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.classes , then s.range must be in ReflexiveAncestors(Type(i.<s>)) Additional checks MAY be performed based on whether s.inlined is True if s.inlined , then i.<s> SHOULD NOT be a Reference if s.inlined is False, then EITHER: i.<s> SHOULD be a Reference OR i.<s> instantiates a class R such that R has no slot rs that is declared to be an identifier. i.e. rs.identifier = True","title":"Range class instantiation check"},{"location":"specification/05validation/#boolean-combinations-of-expressions","text":"There are 4 boolean operator metaslots: any_of exactly_one_of none_of all_of These can apply to classes, slots, types, or enums. The range is always a list of operand expressions of the same type. In all cases, the semantics are as follows: any_of: true if there exists a member of the operands that evaluates to true for empty lists this is always false exactly_one_of: true if there exists a member of the operands that evaluates to true, and all other members evaluate to false for empty lists this is always false none_of: true if there does not exist a member of the operands that evaluates to true for empty lists this is always true for lists of length 1 this is the same as the logical NOT operator for lists of length 2 this is the same as the logical XOR operator all_of: true if there are no members that evaluate to false for empty lists this is always true","title":"Boolean combinations of expressions"},{"location":"specification/05validation/#range-expression-checks","text":"For each slot s in Assignments , if i.<s> is not None, and RE = s.range_expression is not None, then a check CE ( x ) is performed on i.<s>","title":"range expression checks"},{"location":"specification/05validation/#rule-evaluation","text":"For each rule r in C .rules: if r.preconditions is None or r.preconditions is satisfied, then r.postconditions are applied","title":"Rule evaluation"},{"location":"specification/05validation/#classification-rule-evaluation","text":"","title":"Classification Rule evaluation"},{"location":"specification/05validation/#type-designator-checks","text":"","title":"type designator checks"},{"location":"specification/05validation/#validation-of-typedefinitions","text":"For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.types , where i.<s> = *T*( **AtomicValue** ) must match s.range , here T.uri is used to determine the type: for xsd floats, doubles, and decimals, AtomicValue must be a decimal- for xsd floats, doubles, and decimals, AtomicValue must be a decimal for xsd ints, AtomicValue must be an Integer for xsd dates, datetimes, and times, AtomicValue must be a string conforming to the relevant ISO type for xsd booleans, AtomicValue must be True or False","title":"Validation of TypeDefinitions"},{"location":"specification/05validation/#validation-of-enumdefinitions","text":"For each slot s in Assignments , if i.<s> is not None, and s.range is in m*.enums , then i.<s> must be equal to pv.text for some pv in m*.enums[s.range]","title":"Validation of EnumDefinitions"},{"location":"specification/05validation/#inference-of-new-values","text":"","title":"Inference of new values"},{"location":"specification/06mapping/","text":"Translation of instance graphs This section describes how LinkML instances are translated to different formats and data models. Conversion from LinkML instances to another format is called serialization or dumping Conversion to LinkML instances from another format is called parsing , loading , or deserialization The reference implementation is the linkml-runtime but other implementations that conform to this specification are valid. Translation of instances to JSON or YAML Here we define a mapping of LinkML instances to JSON. As JSON is a subset of YAML, this can also be used to load and dump from YAML. This is the canonical YAML mapping. We leave open the possibility of a direct YAML conversion in future which makes use of YAML tags to encode typing information. Serialization to JSON takes as input: a (root) instance Parsing from JSON takes as input: a JSON document a target ClassDefinitionName a SchemaDefinition Instances of ClassDefinition Given an instance i of a ClassDefinition: ClassDefinitionName ( s1=v1 , ..., sn=vn ) This is translated to a JSON object { Tr(s1) = Tr(v1), Tr(s2) = Tr(v2) ..., Tr(sn) = Tr(vn) } Note this is potentially lossy, as the type is dropped When parsing, if this is the root instance, then the target ClassDefinition is used If this is not the root instance, then the type is inferred from the root of the parent slot in the derived schema Optionally, this type is deepened if C.type_designator is not None - the value of this slot is used to set the target ClassDefinitionName Instances of None None is mapped to JSON nulls. It is conventional to omit an assignment whose value is None/null when serializing. The canonical serialization MUST omit these, but a parser MUST accept None/null values that are explicitly provided Instances of Collections of InstancesOfClass If the parent slot s.inlined_as_list=True { IdVal(member1): Tr(member1) - IdField(member1) ... IdVal(memberN): Tr(memberN) - IdField(memberN) } otherwise: [ Tr(member_1), ... Tr(member_n), ] Instances of other Collections These are always translated to lists: [ Tr(member_1), ... Tr(member_n), ] Instances of TypeDefinition The direct value is used Instances of EnumDefinition The direct value is used Instances of ClassDefinitionReference The direct value is used Translation to RDF Two RDF translations are provided: A direct translation Translation via JSON-LD, which combines Translation of a LinkML SchemaDefinition to a JSON-LD Context The standard translation of LinkML instances to JSON Both translations make use of the prefixes provided in the schema The semantic content of both is equivalent. Mapping of CURIEs to URIs LinkML provides standard types: Curie Uri Curieoruri The syntax for a CURIE is defined by W3C CURIE Syntax 1.0 curie := [ [ prefix ] ':' ] reference prefix := NCName reference := irelative-ref We define a function CurieToUri ( x ) that maps (expands) a CurieOrUri to a Uri If x is already a Uri, then x is returned, otherwise the following procedure is followed To expand a CURIE with an explicit prefix to a URI using a schema m , first m.prefixes is consulted for m.prefixes[prefix] . If this is present, then m.prefixes[prefix].prefix_reference is uses as the Base URI If this is not present, then m.prefixes[m.default_prefix].prefix_reference is used as the Base URI to obtain the URI, the Base URI is concatenated with the reference If the CURIE has no explicit prefix, and the CURIE is value of a slot s , then s.implicit_prefix is used Direct Translation of instance graphs to RDF A translation Tr operates on an instance i , in the context of a derived schema m* Instances of ClassDefinition If i is an instance of a ClassDefinition, then Tr (i) is as follows: ClassDefinitionName ( s1=v1 , ..., sn=v2 ) We assign a value to subject which will be either an IRI, or a blank node If IdVal ( i ) is None, the subject is assigned a blank node Otherwise subject = CurieToUri ( IdVal ( i )) We assign a value object for the type of i . This will be equivalent to the c.class_uri in m* This is used to generate a triple ( subject rdf:type CurieToUri ( object )) For each s=v in the assignments where s.identifier=True does not hold, and v is not None , we generate a triple ( subject TrSlot(s) Tr(v)) Here TrSlot ( s ) = CurieToUri ( s.slot_uri ) Instances of TypeDefinition If i is an instance of a TypeDefinition of type t then Tr (i) is translated to an RDF literal, with datatype CurieToUri (t.uri) Instances of EnumDefinition If i is an instance of a EnumDefinition, then Tr (i) is as follows: If i corresponds to a PermissibleValue with pv.meaning that is not None, then Tr (i) = CurieToUri (pv.meaning) Instances of ClassDefinitionReference If i is an instance of a ClassDefinitionReference then Tr (i) = CurieToUri (i.value) Translation of instance graphs to RDF graphs (via JSON-LD) To be specified Translation of instance graphs to RDF* and property graphs To be specified","title":"Mapping of Instances"},{"location":"specification/06mapping/#translation-of-instance-graphs","text":"This section describes how LinkML instances are translated to different formats and data models. Conversion from LinkML instances to another format is called serialization or dumping Conversion to LinkML instances from another format is called parsing , loading , or deserialization The reference implementation is the linkml-runtime but other implementations that conform to this specification are valid.","title":"Translation of instance graphs"},{"location":"specification/06mapping/#translation-of-instances-to-json-or-yaml","text":"Here we define a mapping of LinkML instances to JSON. As JSON is a subset of YAML, this can also be used to load and dump from YAML. This is the canonical YAML mapping. We leave open the possibility of a direct YAML conversion in future which makes use of YAML tags to encode typing information. Serialization to JSON takes as input: a (root) instance Parsing from JSON takes as input: a JSON document a target ClassDefinitionName a SchemaDefinition","title":"Translation of instances to JSON or YAML"},{"location":"specification/06mapping/#instances-of-classdefinition","text":"Given an instance i of a ClassDefinition: ClassDefinitionName ( s1=v1 , ..., sn=vn ) This is translated to a JSON object { Tr(s1) = Tr(v1), Tr(s2) = Tr(v2) ..., Tr(sn) = Tr(vn) } Note this is potentially lossy, as the type is dropped When parsing, if this is the root instance, then the target ClassDefinition is used If this is not the root instance, then the type is inferred from the root of the parent slot in the derived schema Optionally, this type is deepened if C.type_designator is not None - the value of this slot is used to set the target ClassDefinitionName","title":"Instances of ClassDefinition"},{"location":"specification/06mapping/#instances-of-none","text":"None is mapped to JSON nulls. It is conventional to omit an assignment whose value is None/null when serializing. The canonical serialization MUST omit these, but a parser MUST accept None/null values that are explicitly provided","title":"Instances of None"},{"location":"specification/06mapping/#instances-of-collections-of-instancesofclass","text":"If the parent slot s.inlined_as_list=True { IdVal(member1): Tr(member1) - IdField(member1) ... IdVal(memberN): Tr(memberN) - IdField(memberN) } otherwise: [ Tr(member_1), ... Tr(member_n), ]","title":"Instances of Collections of InstancesOfClass"},{"location":"specification/06mapping/#instances-of-other-collections","text":"These are always translated to lists: [ Tr(member_1), ... Tr(member_n), ]","title":"Instances of other Collections"},{"location":"specification/06mapping/#instances-of-typedefinition","text":"The direct value is used","title":"Instances of TypeDefinition"},{"location":"specification/06mapping/#instances-of-enumdefinition","text":"The direct value is used","title":"Instances of EnumDefinition"},{"location":"specification/06mapping/#instances-of-classdefinitionreference","text":"The direct value is used","title":"Instances of ClassDefinitionReference"},{"location":"specification/06mapping/#translation-to-rdf","text":"Two RDF translations are provided: A direct translation Translation via JSON-LD, which combines Translation of a LinkML SchemaDefinition to a JSON-LD Context The standard translation of LinkML instances to JSON Both translations make use of the prefixes provided in the schema The semantic content of both is equivalent.","title":"Translation to RDF"},{"location":"specification/06mapping/#mapping-of-curies-to-uris","text":"LinkML provides standard types: Curie Uri Curieoruri The syntax for a CURIE is defined by W3C CURIE Syntax 1.0 curie := [ [ prefix ] ':' ] reference prefix := NCName reference := irelative-ref We define a function CurieToUri ( x ) that maps (expands) a CurieOrUri to a Uri If x is already a Uri, then x is returned, otherwise the following procedure is followed To expand a CURIE with an explicit prefix to a URI using a schema m , first m.prefixes is consulted for m.prefixes[prefix] . If this is present, then m.prefixes[prefix].prefix_reference is uses as the Base URI If this is not present, then m.prefixes[m.default_prefix].prefix_reference is used as the Base URI to obtain the URI, the Base URI is concatenated with the reference If the CURIE has no explicit prefix, and the CURIE is value of a slot s , then s.implicit_prefix is used","title":"Mapping of CURIEs to URIs"},{"location":"specification/06mapping/#direct-translation-of-instance-graphs-to-rdf","text":"A translation Tr operates on an instance i , in the context of a derived schema m*","title":"Direct Translation of instance graphs to RDF"},{"location":"specification/06mapping/#instances-of-classdefinition_1","text":"If i is an instance of a ClassDefinition, then Tr (i) is as follows: ClassDefinitionName ( s1=v1 , ..., sn=v2 ) We assign a value to subject which will be either an IRI, or a blank node If IdVal ( i ) is None, the subject is assigned a blank node Otherwise subject = CurieToUri ( IdVal ( i )) We assign a value object for the type of i . This will be equivalent to the c.class_uri in m* This is used to generate a triple ( subject rdf:type CurieToUri ( object )) For each s=v in the assignments where s.identifier=True does not hold, and v is not None , we generate a triple ( subject TrSlot(s) Tr(v)) Here TrSlot ( s ) = CurieToUri ( s.slot_uri )","title":"Instances of ClassDefinition"},{"location":"specification/06mapping/#instances-of-typedefinition_1","text":"If i is an instance of a TypeDefinition of type t then Tr (i) is translated to an RDF literal, with datatype CurieToUri (t.uri)","title":"Instances of TypeDefinition"},{"location":"specification/06mapping/#instances-of-enumdefinition_1","text":"If i is an instance of a EnumDefinition, then Tr (i) is as follows: If i corresponds to a PermissibleValue with pv.meaning that is not None, then Tr (i) = CurieToUri (pv.meaning)","title":"Instances of EnumDefinition"},{"location":"specification/06mapping/#instances-of-classdefinitionreference_1","text":"If i is an instance of a ClassDefinitionReference then Tr (i) = CurieToUri (i.value)","title":"Instances of ClassDefinitionReference"},{"location":"specification/06mapping/#translation-of-instance-graphs-to-rdf-graphs-via-json-ld","text":"To be specified","title":"Translation of instance graphs to RDF graphs (via JSON-LD)"},{"location":"specification/06mapping/#translation-of-instance-graphs-to-rdf-and-property-graphs","text":"To be specified","title":"Translation of instance graphs to RDF* and property graphs"},{"location":"specification/linkml-fol/","text":"","title":"Linkml fol"},{"location":"types/Boolean/","text":"Type: boolean A binary (true or false) value URI: linkml:Boolean Root (builtin) type Bool Representation bool","title":"Type: boolean"},{"location":"types/Boolean/#type-boolean","text":"A binary (true or false) value URI: linkml:Boolean Root (builtin) type Bool Representation bool","title":"Type: boolean"},{"location":"types/Date/","text":"Type: date a date (year, month and day) in an idealized calendar URI: linkml:Date Root (builtin) type XSDDate Representation str","title":"Type: date"},{"location":"types/Date/#type-date","text":"a date (year, month and day) in an idealized calendar URI: linkml:Date Root (builtin) type XSDDate Representation str","title":"Type: date"},{"location":"types/DateOrDatetime/","text":"Type: date_or_datetime Either a date or a datetime URI: linkml:DateOrDatetime Root (builtin) type str Representation str","title":"Type: date_or_datetime"},{"location":"types/DateOrDatetime/#type-date_or_datetime","text":"Either a date or a datetime URI: linkml:DateOrDatetime Root (builtin) type str Representation str","title":"Type: date_or_datetime"},{"location":"types/Datetime/","text":"Type: datetime The combination of a date and time URI: linkml:Datetime Root (builtin) type XSDDateTime Representation str","title":"Type: datetime"},{"location":"types/Datetime/#type-datetime","text":"The combination of a date and time URI: linkml:Datetime Root (builtin) type XSDDateTime Representation str","title":"Type: datetime"},{"location":"types/Decimal/","text":"Type: decimal A real number with arbitrary precision that conforms to the xsd:decimal specification URI: linkml:Decimal Root (builtin) type Decimal","title":"Type: decimal"},{"location":"types/Decimal/#type-decimal","text":"A real number with arbitrary precision that conforms to the xsd:decimal specification URI: linkml:Decimal Root (builtin) type Decimal","title":"Type: decimal"},{"location":"types/Double/","text":"Type: double A real number that conforms to the xsd:double specification URI: linkml:Double Root (builtin) type float","title":"Type: double"},{"location":"types/Double/#type-double","text":"A real number that conforms to the xsd:double specification URI: linkml:Double Root (builtin) type float","title":"Type: double"},{"location":"types/Float/","text":"Type: float A real number that conforms to the xsd:float specification URI: linkml:Float Root (builtin) type float","title":"Type: float"},{"location":"types/Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: linkml:Float Root (builtin) type float","title":"Type: float"},{"location":"types/Integer/","text":"Type: integer An integer URI: linkml:Integer Root (builtin) type int","title":"Type: integer"},{"location":"types/Integer/#type-integer","text":"An integer URI: linkml:Integer Root (builtin) type int","title":"Type: integer"},{"location":"types/Ncname/","text":"Type: ncname Prefix part of CURIE URI: linkml:Ncname Root (builtin) type NCName Representation str","title":"Type: ncname"},{"location":"types/Ncname/#type-ncname","text":"Prefix part of CURIE URI: linkml:Ncname Root (builtin) type NCName Representation str","title":"Type: ncname"},{"location":"types/Nodeidentifier/","text":"Type: nodeidentifier A URI, CURIE or BNODE that represents a node in a model. URI: linkml:Nodeidentifier Root (builtin) type NodeIdentifier Representation str","title":"Type: nodeidentifier"},{"location":"types/Nodeidentifier/#type-nodeidentifier","text":"A URI, CURIE or BNODE that represents a node in a model. URI: linkml:Nodeidentifier Root (builtin) type NodeIdentifier Representation str","title":"Type: nodeidentifier"},{"location":"types/Objectidentifier/","text":"Type: objectidentifier A URI or CURIE that represents an object in the model. URI: linkml:Objectidentifier Root (builtin) type ElementIdentifier Representation str Other properties Comments: Used for inheritence and type checking","title":"Type: objectidentifier"},{"location":"types/Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: linkml:Objectidentifier Root (builtin) type ElementIdentifier Representation str","title":"Type: objectidentifier"},{"location":"types/Objectidentifier/#other-properties","text":"Comments: Used for inheritence and type checking","title":"Other properties"},{"location":"types/String/","text":"Type: string A character string URI: linkml:String Root (builtin) type str","title":"Type: string"},{"location":"types/String/#type-string","text":"A character string URI: linkml:String Root (builtin) type str","title":"Type: string"},{"location":"types/Time/","text":"Type: time A time object represents a (local) time of day, independent of any particular day URI: linkml:Time Root (builtin) type XSDTime Representation str","title":"Type: time"},{"location":"types/Time/#type-time","text":"A time object represents a (local) time of day, independent of any particular day URI: linkml:Time Root (builtin) type XSDTime Representation str","title":"Type: time"},{"location":"types/Uri/","text":"Type: uri a complete URI URI: linkml:Uri Root (builtin) type URI Representation str","title":"Type: uri"},{"location":"types/Uri/#type-uri","text":"a complete URI URI: linkml:Uri Root (builtin) type URI Representation str","title":"Type: uri"},{"location":"types/Uriorcurie/","text":"Type: uriorcurie a URI or a CURIE URI: linkml:Uriorcurie Root (builtin) type URIorCURIE Representation str","title":"Type: uriorcurie"},{"location":"types/Uriorcurie/#type-uriorcurie","text":"a URI or a CURIE URI: linkml:Uriorcurie Root (builtin) type URIorCURIE Representation str","title":"Type: uriorcurie"}]}
\ No newline at end of file
diff --git a/docs/sitemap.xml b/docs/sitemap.xml
index 106ce48b..b3db1d1e 100644
--- a/docs/sitemap.xml
+++ b/docs/sitemap.xml
@@ -2,1712 +2,1787 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
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          <changefreq>daily</changefreq>
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          <changefreq>daily</changefreq>
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     <url>
          <loc>None</loc>
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          <loc>None</loc>
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          <loc>None</loc>
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          <changefreq>daily</changefreq>
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          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
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          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
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          <changefreq>daily</changefreq>
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     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
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          <changefreq>daily</changefreq>
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     <url>
          <loc>None</loc>
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+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
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     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
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     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
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     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
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+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
     <url>
          <loc>None</loc>
-         <lastmod>2022-12-16</lastmod>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
+         <changefreq>daily</changefreq>
+    </url>
+    <url>
+         <loc>None</loc>
+         <lastmod>2023-01-19</lastmod>
          <changefreq>daily</changefreq>
     </url>
 </urlset>
\ No newline at end of file
diff --git a/docs/sitemap.xml.gz b/docs/sitemap.xml.gz
index 8cacaa7e..4b53ec5f 100644
Binary files a/docs/sitemap.xml.gz and b/docs/sitemap.xml.gz differ
diff --git a/docs/specification/00preamble/index.html b/docs/specification/00preamble/index.html
index ffcec937..4c5d5bbf 100644
--- a/docs/specification/00preamble/index.html
+++ b/docs/specification/00preamble/index.html
@@ -679,8 +679,8 @@ <h1 id="linked-data-modeling-language-specification">Linked Data Modeling Langua
 <li>Harold Solbrig, Johns Hopkins University</li>
 </ul>
 <h2 id="abstract">Abstract</h2>
-<p>The Linked Data Modeling Language (LinkML) is a language for writing schemas that describe the structure of <em>instance</em> data. A LinkML schema consists of a number of different elements, including <em>classes</em>, which are used to type instances, and <em>slots</em> which are used to describe instance data attributes.</p>
-<p>The LinkML specification defines the structure of instance data using a functional-style syntax, and defines the elements of a schema, together with the rules for operating over these schemas.</p>
+<p>The Linked Data Modeling Language (LinkML) is a language for working with and specifying the structure of <em>instance</em> data. A LinkML <em>schema</em> (aka model or datamodel) describes the structure of instance data, and specifies <em>valid</em> instances and rules for performing <em>inference</em> over instance data.</p>
+<p>This document defines the structure of instance data using a functional-style syntax, and defines the structure of a particular class of instance data, a <em>LinkML schema</em>, and the rules for these schemas.</p>
 <h2 id="notes">Notes</h2>
 <p>More information about LinkML can be found on the <a href="https://linkml.io">LinkML site</a>, which includes introductory material and <a href="https://linkml.io/linkml/intro/tutorial">tutorials</a>.
 It also includes a reference implementation and set of tools for working with LinkML schemas and data.</p>
diff --git a/docs/specification/01introduction/index.html b/docs/specification/01introduction/index.html
index 9b5634a6..0bbc5fe3 100644
--- a/docs/specification/01introduction/index.html
+++ b/docs/specification/01introduction/index.html
@@ -761,10 +761,11 @@ <h1 id="introduction">Introduction</h1>
 <p>LinkML is a data modeling language for describing the structure of a collection of <em>instances</em>, where instances are tree-like object-oriented structures. Instances are pieces of information that represent things of interest in a particular domain, such as individual people, biological samples, places, events, or abstract entities. </p>
 <p>Instances are either primitive <em>types</em> such as numbers or strings, or objects that are typed using <em>classes</em> from a LinkML <em>schema</em>. Classes are categories or groupings of things in the domain of interest; for example, "Person", "Medical History", "Data file", or "Country". Instances can be inter-related by assigning <em>slot values</em>; for example, an instance of a Person may have values for slots "name" or "country of birth".</p>
 <p>LinkML schemas also specify <em>rules</em> for determining if instances conform to the schema, and for <em>inference</em> adding additional implicit slot values.</p>
-<p>LinkML is independent of any programming language, database technology, and is independent of any concrete form for serializing instances of schemas. Mappings are provided for serializing instances as JSON, YAML, RDF, flat tables, or relational models, or for mapping to programming language structures. However, the structure and semantics of LinkML are not dependent on any of these. Schemas are typically expressed using the YAML serialization, but this specification is defined independent of that particular serialization.</p>
+<p>LinkML is independent of any programming language, database technology, and is independent of any concrete form for serializing instances of schemas. Mappings are provided for serializing instances as JSON, YAML, RDF, flat tables, or relational models, or for mapping to programming language structures. However, the structure and semantics of LinkML are independent from any of these. Schemas are typically expressed using the YAML serialization, but this specification is defined independent of that particular serialization.</p>
 <p>LinkML is self-describing, and any LinkML schema is itself a collection instances that instantiates elements in a special schema called the <em>LinkML metamodel</em>.</p>
 <h2 id="audience">Audience</h2>
-<p>This document is intended for LinkML tool and framework implementors, and is intended to provide formal clarity about the structure and semantics of LinkML.</p>
+<p>This document is intended for LinkML tool and framework implementors, and is intended to provide formal clarity about
+the structure and semantics of LinkML.</p>
 <p>For a more lightweight introduction, consult the material on the main <a href="https://linkml.io">LinkML site</a>,
 including the LinkML tutorial.</p>
 <h2 id="conventions-and-terminology">Conventions and terminology</h2>
diff --git a/docs/specification/02instances/index.html b/docs/specification/02instances/index.html
index 28526e20..cec47f2c 100644
--- a/docs/specification/02instances/index.html
+++ b/docs/specification/02instances/index.html
@@ -414,10 +414,12 @@
 <article class="md-content__inner md-typeset">
 <h1 id="linkml-instances">LinkML Instances</h1>
 <h2 id="functional-instance-syntax-and-structure">Functional Instance Syntax and Structure</h2>
-<p>This specification provides a grammar for a <strong>functional syntax</strong> for expressing LinkML instances. This syntax is not intended for data exchange, but instead for unambiguous describing data in LinkML.</p>
+<p>This specification provides a grammar for a <strong>functional syntax</strong> for
+expressing LinkML instances. This syntax is not intended for data
+exchange, but instead for unambiguous describing data in LinkML.</p>
 <p><a href="06mapping">Section 6</a> specifies how the instance model is converted to JSON, YAML, and RDF.</p>
 <h3 id="instances">Instances</h3>
-<p>An instance is either one of four <em>definition</em> types, or a collection, or the special token <code>None</code>. The four definition types are subdivided into instances of classes (aka objects), or atomic instances:</p>
+<p>An instance is either one of four <em>definition</em> types, or a collection, or the special token <code>None</code>:</p>
 <blockquote>
 <p><strong>Instance</strong> := <strong>None</strong> | <strong>InstanceOfClass</strong> | <strong>AtomicInstance</strong> | <strong>CollectionInstance</strong></p>
 <p><strong>AtomicInstance</strong> := <strong>InstanceOfType</strong> | <strong>InstanceOfEnum</strong> | <strong>InstanceOfReference</strong></p>
diff --git a/docs/specification/03schemas/index.html b/docs/specification/03schemas/index.html
index f64df3c8..474a326b 100644
--- a/docs/specification/03schemas/index.html
+++ b/docs/specification/03schemas/index.html
@@ -21,7 +21,7 @@
 <input autocomplete="off" class="md-toggle" data-md-toggle="search" id="__search" type="checkbox"/>
 <label class="md-overlay" for="__drawer"></label>
 <div data-md-component="skip">
-<a class="md-skip" href="#schema-data-model">
+<a class="md-skip" href="#schema-datamodel">
           Skip to content
         </a>
 </div>
@@ -642,16 +642,16 @@
 </div>
 <div class="md-content" data-md-component="content">
 <article class="md-content__inner md-typeset">
-<h1 id="schema-data-model">Schema Data Model</h1>
+<h1 id="schema-datamodel">Schema Datamodel</h1>
 <p>This section describes the <em>structure</em> of a LinkML schema. For precise interpretation of these structures, refer to the following two sections on <em>derived schemas</em> and <em>validation</em></p>
 <h2 id="schema-basics">Schema Basics</h2>
-<p>A LinkML <strong>schema</strong> specifies rules and structural conformance conditions for <strong>instances</strong>. Schemas allow for:</p>
+<p>A LinkML <strong>schema</strong> specifies rules and structural conformance conditions for <em>instances</em>. Schemas allow for:</p>
 <ul>
 <li>parsing of instance <strong>serializations</strong> to LinkML instance structures</li>
 <li>structurally and semantically <strong>validating</strong> LinkML instance structures</li>
 <li><strong>inference</strong> of missing values in LinkML instance structures</li>
 </ul>
-<p>Every LinkML schema <em>m</em> is itself an instance of a special class <a href="https://w3id.org/linkml/SchemaDefinition">SchemaDefinition</a> that forms part of a special schema called the <strong>LinkML metamodel</strong>, which is denoted by <em>m<sup>M</sup></em>. There is exactly one metamodel.</p>
+<p>Every LinkML schema <em>m</em> is itself an instance of a special class <a href="https://w3id.org/linkml/SchemaDefinition">SchemaDefinition</a> that forms part of a special schema called the <strong>LinkML metamodel</strong>, which is denoted as <em>m<sup>M</sup></em>. There is exactly one metamodel.</p>
 <p>In this specification:</p>
 <ul>
 <li>ClassDefinitions in <em>m<sup>M</sup></em> are called <strong>metaclasses</strong></li>
@@ -664,10 +664,6 @@ <h2 id="schema-basics">Schema Basics</h2>
 </ul>
 <p>This specification specifies the <em>normative elements</em> necessary to specify the behavior of LinkML schemas. Schemas may have additional
 elements provided in the metamodel. For example, elements in schemas can have <em>informative</em> slot assignments for slots such as <a href="https://w3id.org/linkml/title">title</a>, <a href="https://w3id.org/linkml/description">description</a>, and so on, but these slots are not described in this specification as they are not normative and do not affect the formal interpretation of schemas.</p>
-<p>The subset of the metamodel that corresponds to the specification is called the SpecificationProfile, and it is found at:</p>
-<ul>
-<li><a href="https://w3id.org/linkml/SpecificationProfile">https://w3id.org/linkml/SpecificationProfile</a> </li>
-</ul>
 <h3 id="yaml-representation-of-schemas">YAML representation of schemas</h3>
 <p>Because schemas and all the parts of a schema are instances of metaclasses in the metamodel, the YAML serialization rules from <a href="06mapping">section 6</a> can be applied to both serialized and deserialized a schema as YAML.</p>
 <h3 id="analogies-to-other-modeling-frameworks">Analogies to other modeling frameworks</h3>
@@ -693,7 +689,7 @@ <h3 id="analogies-to-other-modeling-frameworks">Analogies to other modeling fram
 <li>Note however that in LinkML enums are optionally backed by stronger semantics with enum elements (permissible values) mapped to vocabularies or ontologies</li>
 </ul>
 </li>
-<li>TypeDefinitions are analogous to:<ul>
+<li>EnumDefinitions are analogous to:<ul>
 <li><a href="https://en.wikipedia.org/wiki/Data_type">data types</a> in most object-oriented languages </li>
 <li>primitive types in database systems</li>
 <li>extensible types in some systems</li>
@@ -795,6 +791,7 @@ <h3 id="schemadefinition-normative-subset-uml">SchemaDefinition: Normative subse
     SchemaDefinition "1" --&gt; "*" ClassDefinition: classes
     SchemaDefinition "1" --&gt; "*" SlotDefinition: slots
     SchemaDefinition "1" --&gt; "*" EnumDefinition: enums
+    SchemaDefinition "1" --&gt; "*" EnumDefinition: Enums
     SchemaDefinition "1" --&gt; "*" SubsetDefinition: subsets
     SchemaDefinition "1" --&gt; "*" Prefix: prefixes
     ClassDefinition --|&gt; Element
@@ -1268,7 +1265,7 @@ <h3 id="slotdefinition-normative-subset-metaslots">SlotDefinition: Normative sub
 </tr>
 <tr>
 <td><a href="union_of.md">union_of</a></td>
-<td>0..* <br/> <a href="SlotDefinition.md">SlotDefinition</a></td>
+<td>0..* <br/> <a href="TypeDefinition.md">TypeDefinition</a></td>
 <td>indicates that the domain element consists exactly of the members of the elem...</td>
 </tr>
 <tr>
diff --git a/docs/specification/04derived-schemas/index.html b/docs/specification/04derived-schemas/index.html
index 2c894217..1c8695b8 100644
--- a/docs/specification/04derived-schemas/index.html
+++ b/docs/specification/04derived-schemas/index.html
@@ -176,13 +176,13 @@
 <nav aria-label="Functions" class="md-nav">
 <ul class="md-nav__list">
 <li class="md-nav__item">
-<a class="md-nav__link" href="#list-function">
-    List Function
+<a class="md-nav__link" href="#function-getidentifierslot">
+    Function: GetIdentifierSlot
   </a>
 </li>
 <li class="md-nav__item">
-<a class="md-nav__link" href="#closure-function">
-    Closure Function
+<a class="md-nav__link" href="#function-closure">
+    Function: Closure
   </a>
 </li>
 <li class="md-nav__item">
@@ -205,8 +205,8 @@
 <nav aria-label="Derivation Rules" class="md-nav">
 <ul class="md-nav__list">
 <li class="md-nav__item">
-<a class="md-nav__link" href="#rule-merge-imports-closure">
-    Rule: Merge Imports Closure
+<a class="md-nav__link" href="#rule-model-imports">
+    Rule: Model Imports
   </a>
 </li>
 <li class="md-nav__item">
@@ -234,11 +234,15 @@
     Rule: Derived Class and Slot URIs
   </a>
 </li>
+</ul>
+</nav>
+</li>
 <li class="md-nav__item">
 <a class="md-nav__link" href="#rule-generation-of-patterns-from-structured-patterns">
     Rule: Generation of patterns from structured patterns
   </a>
-</li>
+<nav aria-label="Rule: Generation of patterns from structured patterns" class="md-nav">
+<ul class="md-nav__list">
 <li class="md-nav__item">
 <a class="md-nav__link" href="#rule-generation-of-classdefinitionreferences">
     Rule: Generation of ClassDefinitionReferences
@@ -398,13 +402,13 @@
 <nav aria-label="Functions" class="md-nav">
 <ul class="md-nav__list">
 <li class="md-nav__item">
-<a class="md-nav__link" href="#list-function">
-    List Function
+<a class="md-nav__link" href="#function-getidentifierslot">
+    Function: GetIdentifierSlot
   </a>
 </li>
 <li class="md-nav__item">
-<a class="md-nav__link" href="#closure-function">
-    Closure Function
+<a class="md-nav__link" href="#function-closure">
+    Function: Closure
   </a>
 </li>
 <li class="md-nav__item">
@@ -427,8 +431,8 @@
 <nav aria-label="Derivation Rules" class="md-nav">
 <ul class="md-nav__list">
 <li class="md-nav__item">
-<a class="md-nav__link" href="#rule-merge-imports-closure">
-    Rule: Merge Imports Closure
+<a class="md-nav__link" href="#rule-model-imports">
+    Rule: Model Imports
   </a>
 </li>
 <li class="md-nav__item">
@@ -456,11 +460,15 @@
     Rule: Derived Class and Slot URIs
   </a>
 </li>
+</ul>
+</nav>
+</li>
 <li class="md-nav__item">
 <a class="md-nav__link" href="#rule-generation-of-patterns-from-structured-patterns">
     Rule: Generation of patterns from structured patterns
   </a>
-</li>
+<nav aria-label="Rule: Generation of patterns from structured patterns" class="md-nav">
+<ul class="md-nav__list">
 <li class="md-nav__item">
 <a class="md-nav__link" href="#rule-generation-of-classdefinitionreferences">
     Rule: Generation of ClassDefinitionReferences
@@ -521,52 +529,45 @@
 <div class="md-content" data-md-component="content">
 <article class="md-content__inner md-typeset">
 <h1 id="derived-schemas">Derived Schemas</h1>
-<p>This section describes rules that can be applied to a schema to obtain a <em>derived</em> schema.</p>
-<p>The derived schema can be <em>materialized</em>, or it may be present as a <em>view</em> onto a schema.</p>
-<p>Derived schemas are also known as <em>induced</em> schemas or <em>inferred</em> schemas.</p>
+<p>This section describes rules that can be applied to a schema to obtain a <em>derived</em> (aka <em>induced</em>) schema.</p>
+<p>The derived schema can be materialized, or it may be present as a <em>view</em> onto a schema. A derived view may also be referred to
+as an <em>inferred</em> or <em>induced</em> view.</p>
 <div class="mermaid">flowchart TD
-    M[Asserted Schema] --&gt;|input| Derivation{Derivation Procedure}
-    Derivation --&gt;|ouput| Mstar[Derived Schema]
-    R[Rules] --&gt;|input| Derivation
+    M[Asserted Schema] --&gt; Derivation{Derivation Procedure}
+    Derivation --&gt;|derives| Mstar[Derived Schema]
+    R[Rules] --&gt; Derivation
 </div>
-<p>Derivations happen via <em>derivation rules</em>, using a collection of defined <em>functions</em>.</p>
+<p>Derivations happen via <em>rules</em> that are specified below, using a set of convenience functions</p>
 <h2 id="conventions">Conventions</h2>
-<p>We use <em>m</em> to denote the input or asserted schema (model), and <em>m<sup>D</sup></em> to denote the derived schema</p>
+<p>We use <code>m</code> to denote the input or asserted schema (model), and <em>m<sup>D</sup></em> to denote the derived schema</p>
 <h2 id="functions">Functions</h2>
-<h3 id="list-function">List Function</h3>
-<p>The function <strong>L</strong>(<em>v</em>) returns a list version of the input:</p>
+<h3 id="function-getidentifierslot">Function: GetIdentifierSlot</h3>
+<p>The function <strong>GetIdentifierSlot</strong>(<code>c</code>) takes a ClassDefinition or ClassDefinitionName as input and returns:</p>
+<ul>
+<li>the name of a derived attribute <code>s</code> in <code>c</code> where <code>s.identifier</code> is True in <em>m<sup>D</sup></em></li>
+<li><strong>None</strong> if there is no such slot</li>
+<li>An error if there are multiple such slots</li>
+</ul>
+<h3 id="function-closure">Function: Closure</h3>
+<p>The function <strong>Closure</strong>(<code>x</code>, <code>s</code>) takes as input an element <code>x</code> and a metaslot <code>s</code> and returns the mathematical closure
+of <code>s</code> where <code>s</code> is treated as a relation between instances <code>i</code> and <code>j</code> that holds when  either:</p>
 <ul>
-<li><em>v</em> when <em>v</em> is a collection</li>
-<li>[  ] when <em>v</em> is None</li>
-<li>[ <em>v</em> ] otherwise</li>
+<li>s is not multivalued: <code>i.s = j</code></li>
+<li>s is multivalued: <code>j member-of i.s</code></li>
 </ul>
-<h3 id="closure-function">Closure Function</h3>
-<p>The function <strong>C</strong>(<em>e</em>, <em>f</em>) takes as input an element <em>e</em> and a function <em>f</em> and returns
-the mathematical closure of <em>f</em> </p>
-<p>The <em>ReflexiveClosure</em> <strong>C<sup>*</sup></strong> includes <em>e</em></p>
+<p>The <strong>ReflexiveClosure</strong> includes <code>x</code></p>
 <h3 id="function-parents">Function: Parents</h3>
 <p><strong>Parents</strong> itself is the union of <code>is_a</code> and <code>mixins</code>.</p>
 <blockquote>
-<p><strong>P</strong>(<em>e</em>) = <strong>L</strong>(<em>e</em>.<code>is_a</code>) ∪ <strong>L</strong>(<em>e</em>.<code>mixins</code>) }</p>
+<p><strong>Parents</strong>(x) = <code>{e : e = x.is_a \/ e in x.mixins }</code></p>
 </blockquote>
 <h3 id="function-ancestors">Function: Ancestors</h3>
-<p>The ancestors function <strong>A</strong> returns the <strong>Closure</strong> of the <strong>Parents</strong> function.</p>
-<blockquote>
-<p><strong>A</strong>(<em>e</em>) = <strong>C</strong>(<em>e</em>, <strong>A</strong>)</p>
-</blockquote>
+<p>The function <strong>Ancestors</strong>(<code>x</code>) returns the <strong>Closure</strong> of the <strong>Parents</strong> function applied to <code>x</code>.</p>
 <p>The function <strong>ReflexiveAncestors</strong> uses the <strong>ReflexiveClosure</strong>.</p>
 <h2 id="derivation-rules">Derivation Rules</h2>
-<p>The following rules are applied to deduce a derived schema</p>
-<h3 id="rule-merge-imports-closure">Rule: Merge Imports Closure</h3>
+<h3 id="rule-model-imports">Rule: Model Imports</h3>
 <p>Each model imports zero to many imports, indicated by the <strong>SchemaDefinition</strong>.<a href="https://w3id.org/linkml/imports">imports</a> metaslot.</p>
-<p><em>m<sup>D</sup></em> is set to include the union of all schema elements from the <strong>ReflexiveClosure</strong> of <code>m.imports</code>, such
-that the following holds:</p>
-<blockquote>
-<p><em>m<sup>D</sup></em>.<em>metaslot</em> = <em>v</em> iff <em>m'</em> ∈ <strong>R<sup>C</sup></strong>(<em>m</em>.<code>imports</code>) and <em>m'</em>.<em>metaslot</em> = <em>v</em>
-and <em>metaslot</em> ∈ {<code>classes</code>, <code>slots</code>, <code>types</code>, <code>enums</code>}</p>
-</blockquote>
-<pre><code>*m&lt;sup&gt;D&lt;/sup&gt;*
-</code></pre>
+<p><em>m<sup>D</sup></em> is set to be the union of all schema elements from the <strong>ReflexiveClosure</strong> of <code>m.imports</code></p>
 <p>When copying an element <code>x</code> from an import into <em>m<sup>D</sup></em>, the name <code>x.name</code> must be unique - if the same name has been used in another model, the derivation procedure fails, and an error is thrown.</p>
 <p><strong>Note</strong>: If two or more models import the same target (e.g. <code>m1</code> imports <code>m2</code> and <code>m3</code> and <code>m2</code> imports <code>m3</code>), <code>m3</code> will be only be resolved once.</p>
 <p><strong>Note</strong>: Two models are considered to be "identical" if they both 
@@ -574,7 +575,7 @@ <h3 id="rule-merge-imports-closure">Rule: Merge Imports Closure</h3>
 <p>Each imported module must be resolved - i.e the value of the import slot is mapped to a location on disk or on the web</p>
 <h3 id="rule-fromschema-elements">Rule: fromschema elements</h3>
 <p>Each element in the schema as assigned a metaslot <code>fromschema</code> value. This is the value of the <code>id</code> of the schema in which that element is defined.</p>
-<p>This is preserved over imports, such that if <em>m</em> imports <code>m2</code>, and <code>m2</code> defines a class <code>c</code>, then <em>m<sup>D</sup></em><code>[c].fromschema</code> = m2</p>
+<p>This is preserved over imports, such that if <code>m</code> imports <code>m2</code>, and <code>m2</code> defines a class <code>c</code>, then <em>m<sup>D</sup></em><code>[c].fromschema</code> = m2</p>
 <h3 id="rule-applicable-slot-names">Rule: Applicable Slot Names</h3>
 <p>The set of applicable slot names for a class <code>c</code> are determined by taking the union of:</p>
 <ul>
@@ -583,7 +584,7 @@ <h3 id="rule-applicable-slot-names">Rule: Applicable Slot Names</h3>
 </ul>
 <p>For all <code>x</code> in <code>ReflexiveAncestors(c)</code></p>
 <h3 id="rule-derived-attributes">Rule: Derived Attributes</h3>
-<p>Derived attributes can be calculated for every <em>applicable</em> slot name <code>s</code> for any class <code>c</code></p>
+<p>Derived attributes can be calculated for every <em>applicable</em> slot name for any class <code>c</code></p>
 <p><code>c.attributes[s] = DerivedAttributes(c,s)</code></p>
 <p>This is the combination of <em>asserted</em> attributes for c, as well as asserted attributes for ancestors of c,
 as well as the SlotDefinition corresponding to that attribute, together with any overrides specified by <code>slot_usage</code> in <code>c</code>
@@ -599,7 +600,9 @@ <h3 id="rule-derived-attributes">Rule: Derived Attributes</h3>
 <li>inheriting from parents of <code>s</code></li>
 </ul>
 <p>The precedence rules for derived attributes are as follows:</p>
-<p>If a metaslot <code>s</code> is declared <code>multivalued</code> then when copying <code>s</code> from a parent to a child, the values are appended, unless the element already exists.</p>
+<p>If a metaslot <code>s</code> is declared <code>multivalued</code> then when copying <code>s</code> from a parent to a child, the values are appended.</p>
+<p>If a metaslot <code>s</code> is declared <code>multivalued</code> </p>
+<p>if a slot is multi valued then copying will append, unless the element already exists.</p>
 <p>if the slot is single valued, and intersection rules can be applied to the slot, then these are performed on all values</p>
 <p>if the slot is single valued, and intersection rules cannot be applied to the slot, then the following precedence rules are applied:</p>
 <ul>
@@ -642,11 +645,11 @@ <h3 id="rule-default-range">Rule: Default Range</h3>
 to the value of <code>default_range</code> for the schema in which the slot is defined.</p>
 <h3 id="rule-derived-class-and-slot-uris">Rule: Derived Class and Slot URIs</h3>
 <p>For each class or slot, if a class_uri or slot_uri is not specified, then this is derived by concatenating <code>m.default_prefix</code> with the CURIE separator <code>:</code> followed by the SafeUpperCamelCase encoding of the name of that class or slot definition</p>
-<h3 id="rule-generation-of-patterns-from-structured-patterns">Rule: Generation of patterns from structured patterns</h3>
+<h2 id="rule-generation-of-patterns-from-structured-patterns">Rule: Generation of patterns from structured patterns</h2>
 <p>For any slot <code>s</code>, if <code>s.structured_pattern = p</code> and <code>p</code> is not <strong>None</strong> then <code>s.pattern</code> is assigned a value based on the following
 procedure:</p>
 <p>If <code>p.interpolated</code> is True, then the value of <code>s.syntax</code> is <em>interpolated</em>, by replacing all occurrences of braced text <code>{VAR}</code>
-with the value of <code>VAR</code>. The value of <code>VAR</code> is obtained using <code>m.settings[VAR]</code>, where <em>m</em> is the schema in which <code>p</code> is introduced.</p>
+with the value of <code>VAR</code>. The value of <code>VAR</code> is obtained using <code>m.settings[VAR]</code>, where <code>m</code> is the schema in which <code>p</code> is introduced.</p>
 <p>If <code>p.interpolated</code> is not True, then the value of <code>s.syntax</code> is used directly.</p>
 <p>If <code>p.partial_match</code> is not True, then <code>s.pattern</code> has a '^' character inserted at the begining and a '$' character inserted as the end.</p>
 <h3 id="rule-generation-of-classdefinitionreferences">Rule: Generation of ClassDefinitionReferences</h3>
diff --git a/docs/specification/05validation/index.html b/docs/specification/05validation/index.html
index 652576f2..ff11a611 100644
--- a/docs/specification/05validation/index.html
+++ b/docs/specification/05validation/index.html
@@ -541,14 +541,14 @@ <h3 id="rule-classdefinition-instances-must-instantiate-a-class-in-the-schema">R
 <p><strong>Assignments</strong> is assigned to be the value of <code>C.attributes</code> (see the previous section)</p>
 <p><code>C</code> SHOULD have all the following properties:</p>
 <ul>
-<li><code>C.deprecated</code> SHOULD be <code>None</code></li>
-<li><code>C.abstract</code> SHOULD NOT be <code>True</code></li>
-<li><code>C.mixin</code> SHOULD NOT be <code>True</code></li>
+<li><code>C.deprecated</code> SHOULD be <strong>None</strong></li>
+<li><code>C.abstract</code> SHOULD NOT be <strong>True</strong></li>
+<li><code>C.mixin</code> SHOULD NOT be <strong>True</strong></li>
 </ul>
 <h3 id="rule-identifiers-must-be-unique">Rule: identifiers must be unique</h3>
 <p>We define a procedure <strong>IdVal</strong>(<code>i</code>) which yields the value of <code>i.&lt;identifier_slot&gt;</code> where <code>identifier_slot</code>
-is the slot in <strong>Assignments</strong> with metaslot assignment <code>identifier=True</code></p>
-<p>If there is no such slot then <strong>IdVal</strong>(<code>i</code>) is <code>None</code> and this check is ignored.</p>
+is the slot n <strong>Assignments</strong> with metaslot assignment <code>identifier</code>=<strong>True</strong></p>
+<p>If there is no such slot then <code>**IdVal**(</code>i`) is None and this check is ignored.</p>
 <p><code>i</code> is invalid if there exists another instance <code>j</code> such that <code>j</code> is reachable from <code>root</code>,
 and <strong>IdVal</strong>(<code>i</code>)=<strong>IdVal</strong>(<code>j</code>) and <code>i</code> and <code>j</code> are distinct.</p>
 <h3 id="rule-all-assignments-must-be-to-permitted-slots">Rule: All assignments must be to permitted slots</h3>
@@ -564,35 +564,35 @@ <h3 id="rule-all-recommended-slots-should-be-specified">Rule: All recommended sl
 <h3 id="rule-assigned-values-must-conform-to-multivalued-cardinality">Rule: Assigned values must conform to multivalued cardinality</h3>
 <p>For each slot <code>s</code> in <strong>Assignments</strong>,</p>
 <ul>
-<li>if <code>s.multivalued</code> is <code>True</code>, then <code>i.&lt;s&gt;</code> must be a collection or <code>None</code></li>
-<li>If <code>s.multivalued</code> is <code>False</code>, then <code>i.&lt;s&gt;</code> must not be a collection</li>
+<li>if <code>s.multivalued</code> is True, then <code>i.&lt;s&gt;</code> must be a collection or None</li>
+<li>If <code>s.multivalued</code> is False, then <code>i.&lt;s&gt;</code> must not be a collection</li>
 </ul>
 <h3 id="rule-values-should-be-within-stated-bounds">Rule: values should be within stated bounds</h3>
 <p>For each slot <code>s</code> in <strong>Assignments</strong>,</p>
 <ul>
-<li>if <code>s.maximum_value</code> is not <code>None</code>, then <code>i.&lt;s&gt;</code> must be a number and must be less that or equal to the maximum value</li>
-<li>if <code>s.minimum_value</code> is not <code>None</code>, then <code>i.&lt;s&gt;</code> must be a number and must be greater that or equal to the minimum value</li>
+<li>if <code>s.maximum_value</code> is not None, then <code>i.&lt;s&gt;</code> must be a number and must be less that or equal to the maximum value</li>
+<li>if <code>s.minimum_value</code> is not None, then <code>i.&lt;s&gt;</code> must be a number and must be greater that or equal to the minimum value</li>
 </ul>
 <h3 id="rule-values-should-equal-evaluable-expression">Rule: values should equal evaluable expression</h3>
-<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>s.equals_expression</code> is not <code>None</code>, then <code>i.&lt;s&gt;</code> must equal
+<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>s.equals_expression</code> is not None, then <code>i.&lt;s&gt;</code> must equal
 the value of <code>Eval(s.equals_expression)</code>. See section on expression language
 for details of syntax.</p>
 <p>Note: this rule can be executed in inference mode</p>
 <h3 id="rule-values-should-equal-string_serialization">Rule: values should equal string_serialization</h3>
-<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>s.string_serialization</code> is not <code>None</code>, then <code>i.&lt;s&gt;</code> must equal
+<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>s.string_serialization</code> is not None, then <code>i.&lt;s&gt;</code> must equal
 the value of <code>Stringify(s.string_serialization)</code>. See section on expression language
 for details of syntax.</p>
 <h3 id="rule-values-should-equal-regular-expression-patterns">Rule: values should equal regular expression patterns</h3>
 <p>Note: this rule can be executed in inference mode</p>
 <h3 id="range-class-instantiation-check">Range class instantiation check</h3>
-<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not <code>None</code>, and <code>s.range</code> is in <code>m*.classes</code>,
+<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not None, and <code>s.range</code> is in <code>m*.classes</code>,
 then <code>s.range</code> must be in <code>ReflexiveAncestors(Type(i.&lt;s&gt;))</code></p>
-<p>Additional checks MAY be performed based on whether <code>s.inlined</code> is <code>True</code></p>
+<p>Additional checks MAY be performed based on whether <code>s.inlined</code> is True</p>
 <ul>
-<li>if <code>s.inlined</code> is <code>True</code>, then <code>i.&lt;s&gt;</code>  SHOULD NOT be a Reference</li>
-<li>if <code>s.inlined</code> is <code>False</code>, then EITHER:<ul>
+<li>if <code>s.inlined</code>, then <code>i.&lt;s&gt;</code>  SHOULD NOT be a Reference</li>
+<li>if <code>s.inlined</code> is False, then EITHER:<ul>
 <li><code>i.&lt;s&gt;</code>  SHOULD be a Reference</li>
-<li>OR <code>i.&lt;s&gt;</code> instantiates a class <code>R</code> such that <code>R</code> has no slot <code>rs</code> that is declared to be an identifier. i.e. <code>rs.identifier = True</code></li>
+<li>OR <code>i.&lt;s&gt;</code> instantiates a class <code>R</code> such that R has no slot <code>rs</code> that is declared to be an identifier. i.e. <code>rs.identifier = True</code></li>
 </ul>
 </li>
 </ul>
@@ -620,28 +620,28 @@ <h3 id="boolean-combinations-of-expressions">Boolean combinations of expressions
 <li>for empty lists this is always true</li>
 </ul>
 <h3 id="range-expression-checks">range expression checks</h3>
-<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not <code>None</code>, and <code>RE = s.range_expression</code> is not <code>None</code>, then a check
+<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not None, and <code>RE = s.range_expression</code> is not None, then a check
 <strong>CE</strong>(<code>x</code>) is performed on <code>i.&lt;s&gt;</code></p>
 <h3 id="rule-evaluation">Rule evaluation</h3>
 <p>For each rule <code>r</code> in <em>C</em>.rules:</p>
 <ul>
-<li>if <code>r.preconditions</code> is <code>None</code> or <code>r.preconditions</code> is satisfied, then</li>
+<li>if <code>r.preconditions</code> is None or <code>r.preconditions</code> is satisfied, then</li>
 <li><code>r.postconditions</code> are applied</li>
 </ul>
 <h3 id="classification-rule-evaluation">Classification Rule evaluation</h3>
 <h3 id="type-designator-checks">type designator checks</h3>
 <h2 id="validation-of-typedefinitions">Validation of TypeDefinitions</h2>
-<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not <code>None</code>, and <code>s.range</code> is in <code>m*.types</code>,
+<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not None, and <code>s.range</code> is in <code>m*.types</code>,
 where <code>i.&lt;s&gt; = *T*( **AtomicValue** )</code> must match <code>s.range</code>,</p>
 <p>here <code>T.uri</code> is used to determine the type:</p>
 <ul>
 <li>for xsd floats, doubles, and decimals, AtomicValue must be a decimal- for xsd floats, doubles, and decimals, AtomicValue must be a decimal</li>
 <li>for xsd ints, AtomicValue must be an Integer</li>
 <li>for xsd dates, datetimes, and times, AtomicValue must be a string conforming to the relevant ISO type</li>
-<li>for xsd booleans, AtomicValue must be <code>True</code> or <code>False</code></li>
+<li>for xsd booleans, AtomicValue must be True or False</li>
 </ul>
 <h2 id="validation-of-enumdefinitions">Validation of EnumDefinitions</h2>
-<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not <code>None</code>, and <code>s.range</code> is in <code>m*.enums</code>,
+<p>For each slot <code>s</code> in <strong>Assignments</strong>, if <code>i.&lt;s&gt;</code> is not None, and <code>s.range</code> is in <code>m*.enums</code>,
 then <code>i.&lt;s&gt;</code> must be equal to <code>pv.text</code> for some pv in <code>m*.enums[s.range]</code></p>
 <h2 id="inference-of-new-values">Inference of new values</h2>
 </article>
diff --git a/docs/specification/linkml-fol/index.html b/docs/specification/linkml-fol/index.html
index c26ea800..c3c82a45 100644
--- a/docs/specification/linkml-fol/index.html
+++ b/docs/specification/linkml-fol/index.html
@@ -9,7 +9,7 @@
       
       
       <link rel="icon" href="../../assets/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.3.1, mkdocs-material-8.3.9">
+      <meta name="generator" content="mkdocs-1.4.2, mkdocs-material-8.5.10">
     
     
       
@@ -17,13 +17,14 @@
       
     
     
-      <link rel="stylesheet" href="../../assets/stylesheets/main.1d29e8d0.min.css">
+      <link rel="stylesheet" href="../../assets/stylesheets/main.975780f9.min.css">
       
         
-        <link rel="stylesheet" href="../../assets/stylesheets/palette.cbb835fc.min.css">
+        <link rel="stylesheet" href="../../assets/stylesheets/palette.2505c338.min.css">
         
       
       
+
     
     
     
@@ -36,12 +37,13 @@
       
     
     
-    <script>__md_scope=new URL("../..",location),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("../..",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
     
       
 
     
     
+    
   </head>
   
   
@@ -103,6 +105,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
           
             <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
@@ -112,6 +115,7 @@
         
           
           
+          
           <input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="amber"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_2">
           
             <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
@@ -137,7 +141,7 @@
       </label>
       <nav class="md-search__options" aria-label="Search">
         
-        <button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
+        <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
           <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
         </button>
       </nav>
@@ -455,8 +459,8 @@
   
   
     <li class="md-nav__item">
-      <a href="../../SpecificationProfile.md" class="md-nav__link">
-        SpecificationProfile
+      <a href="../../SpecificationSubset/" class="md-nav__link">
+        SpecificationSubset
       </a>
     </li>
   
@@ -542,10 +546,11 @@
               </div>
             
           
-          <div class="md-content" data-md-component="content">
-            <article class="md-content__inner md-typeset">
-              
+          
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
                 
+                  
 
 
   <h1>Linkml fol</h1>
@@ -553,10 +558,15 @@ <h1>Linkml fol</h1>
 <pre><code>
 </code></pre>
 
-              
-            </article>
-            
-          </div>
+
+
+
+
+                
+              </article>
+            </div>
+          
+          
         </div>
         
       </main>
@@ -583,11 +593,13 @@ <h1>Linkml fol</h1>
     <div class="md-dialog" data-md-component="dialog">
       <div class="md-dialog__inner md-typeset"></div>
     </div>
-    <script id="__config" type="application/json">{"base": "../..", "features": [], "search": "../../assets/javascripts/workers/search.b97dbffb.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
+    <script id="__config" type="application/json">{"base": "../..", "features": [], "search": "../../assets/javascripts/workers/search.16e2a7d4.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version.title": "Select version"}}</script>
     
-      <script src="../../assets/javascripts/bundle.6c7ad80a.min.js"></script>
+    
+      <script src="../../assets/javascripts/bundle.5a2dcb6a.min.js"></script>
       
     
+    
   </body>
 </html>
\ No newline at end of file
diff --git a/specification/00preamble.md b/linkml_model/model/docs/specification/00preamble.md
similarity index 100%
rename from specification/00preamble.md
rename to linkml_model/model/docs/specification/00preamble.md
diff --git a/specification/01introduction.md b/linkml_model/model/docs/specification/01introduction.md
similarity index 100%
rename from specification/01introduction.md
rename to linkml_model/model/docs/specification/01introduction.md
diff --git a/specification/02instances.md b/linkml_model/model/docs/specification/02instances.md
similarity index 100%
rename from specification/02instances.md
rename to linkml_model/model/docs/specification/02instances.md
diff --git a/specification/03schemas.md b/linkml_model/model/docs/specification/03schemas.md
similarity index 100%
rename from specification/03schemas.md
rename to linkml_model/model/docs/specification/03schemas.md
diff --git a/specification/04derived-schemas.md b/linkml_model/model/docs/specification/04derived-schemas.md
similarity index 100%
rename from specification/04derived-schemas.md
rename to linkml_model/model/docs/specification/04derived-schemas.md
diff --git a/specification/05validation.md b/linkml_model/model/docs/specification/05validation.md
similarity index 100%
rename from specification/05validation.md
rename to linkml_model/model/docs/specification/05validation.md
diff --git a/specification/06mapping.md b/linkml_model/model/docs/specification/06mapping.md
similarity index 100%
rename from specification/06mapping.md
rename to linkml_model/model/docs/specification/06mapping.md
diff --git a/specification/index.md b/linkml_model/model/docs/specification/index.md
similarity index 100%
rename from specification/index.md
rename to linkml_model/model/docs/specification/index.md
diff --git a/mkdocs.yml b/mkdocs.yml
index b3b43bca..1c5965cb 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -21,6 +21,9 @@ theme:
 plugins:
   - search
   - mermaid2
+#markdown_extensions:
+#  - toc:
+#      permalink: true
 docs_dir: target/docs
 site_dir: docs
 nav:
diff --git a/poetry.lock b/poetry.lock
index 9a185328..858b6cd0 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -219,7 +219,7 @@ python-versions = "*"
 python-dateutil = ">=2.8.1"
 
 [package.extras]
-dev = ["wheel", "flake8", "markdown", "twine"]
+dev = ["twine", "markdown", "flake8", "wheel"]
 
 [[package]]
 name = "graphviz"
@@ -434,7 +434,7 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 
 [[package]]
 name = "linkml"
-version = "1.3.16"
+version = "1.4.2"
 description = "Linked Open Data Modeling Language"
 category = "dev"
 optional = false
@@ -450,7 +450,7 @@ jinja2 = ">=3.1.0"
 jsonasobj2 = ">=1.0.3,<2.0.0"
 jsonschema = {version = ">=4.0.0", extras = ["format"]}
 linkml-dataops = "*"
-linkml-runtime = ">=1.3,<1.4"
+linkml-runtime = ">=1,<2"
 myst-parser = "*"
 openpyxl = "*"
 parse = "*"
@@ -534,14 +534,14 @@ python-versions = ">=3.7"
 mdurl = ">=0.1,<1.0"
 
 [package.extras]
-testing = ["pytest-regressions", "pytest-cov", "pytest", "coverage"]
-rtd = ["sphinx-book-theme", "sphinx-design", "sphinx-copybutton", "sphinx", "pyyaml", "myst-parser", "attrs"]
-profiling = ["gprof2dot"]
-plugins = ["mdit-py-plugins"]
-linkify = ["linkify-it-py (>=1.0,<2.0)"]
-compare = ["panflute (>=2.1.3,<2.2.0)", "mistune (>=2.0.2,<2.1.0)", "mistletoe (>=0.8.1,<0.9.0)", "markdown (>=3.3.6,<3.4.0)", "commonmark (>=0.9.1,<0.10.0)"]
+benchmarking = ["psutil", "pytest", "pytest-benchmark (>=3.2,<4.0)"]
 code_style = ["pre-commit (==2.6)"]
-benchmarking = ["pytest-benchmark (>=3.2,<4.0)", "pytest", "psutil"]
+compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.3.6,<3.4.0)", "mistletoe (>=0.8.1,<0.9.0)", "mistune (>=2.0.2,<2.1.0)", "panflute (>=2.1.3,<2.2.0)"]
+linkify = ["linkify-it-py (>=1.0,<2.0)"]
+plugins = ["mdit-py-plugins"]
+profiling = ["gprof2dot"]
+rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx-book-theme"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
 [[package]]
 name = "markupsafe"
@@ -721,8 +721,8 @@ optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-testing = ["pytest-benchmark", "pytest"]
-dev = ["tox", "pre-commit"]
+dev = ["pre-commit", "tox"]
+testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "ply"
@@ -1101,10 +1101,10 @@ python-versions = ">=3.7"
 rdflib = ">=6.1.1"
 
 [package.extras]
-pandas = ["pandas (>=1.3.5)"]
+dev = ["setuptools (>=3.7.1)", "mypy (>=0.931)", "pandas (>=1.3.5)", "pandas-stubs (>=1.2.0.48)"]
+docs = ["sphinx (<5)", "sphinx-rtd-theme"]
 keepalive = ["keepalive (>=0.5)"]
-docs = ["sphinx-rtd-theme", "sphinx (<5)"]
-dev = ["pandas-stubs (>=1.2.0.48)", "pandas (>=1.3.5)", "mypy (>=0.931)", "setuptools (>=3.7.1)"]
+pandas = ["pandas (>=1.3.5)"]
 
 [[package]]
 name = "sphinx"
@@ -1174,8 +1174,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
-lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
@@ -1186,8 +1186,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
-lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
@@ -1198,8 +1198,8 @@ optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-test = ["html5lib", "pytest"]
-lint = ["docutils-stubs", "mypy", "flake8"]
+lint = ["flake8", "mypy", "docutils-stubs"]
+test = ["pytest", "html5lib"]
 
 [[package]]
 name = "sphinxcontrib-jsmath"
@@ -1210,7 +1210,7 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-test = ["mypy", "flake8", "pytest"]
+test = ["pytest", "flake8", "mypy"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
@@ -1221,8 +1221,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
+lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
-lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
@@ -1389,7 +1389,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-co
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.9"
-content-hash = "60a6ec80f540193325c262ff3e17f238ed0851874ec3f3aaf9aa52781d0739ff"
+content-hash = "0fb3f2b153c15d33929305b0d812980e83a0695d21e0318521aa7c9084027707"
 
 [metadata.files]
 alabaster = []
diff --git a/project.Makefile b/project.Makefile
index 1bd639d1..9c952984 100644
--- a/project.Makefile
+++ b/project.Makefile
@@ -2,21 +2,32 @@
 # ---------------------------------------
 # CUSTOM VALIDATION
 # ---------------------------------------
+# TODO: use linkml-run-examples
 EXAMPLES = relational-roles rules slot-group path unique-key inlining-union
 
 all-validate: $(patsubst %, validate-%, $(EXAMPLES))
 validate-%: examples/%-example.yaml
 	$(RUN) linkml-validate -C SchemaDefinition -s linkml_model/model/schema/meta.yaml $<
 
+all-examples:
+	$(RUN) linkml-run-examples -s $(SOURCE_SCHEMA_PATH) -e tests/input/examples/ -d /tmp/TODO
+
+# ---------------------------------------
+# SPECIFICATION
+# ---------------------------------------
+
+#all-spec: $(SPEC)
 
 TITLE = "LinkML Specification"
 SPEC = target/SPECIFICATION.md
-target/0%.md: specification/0%.md
-	(cat $< && echo) > $@.tmp && mv $@.tmp $@
+#target/docs/0%.md: specification/0%.md
+#	(cat $< && echo) > $@.tmp && mv $@.tmp $@
+
+$(SPEC): $(wildcard linkml_model/model/docs/specification/0*.md)
 
-$(SPEC): $(wildcard specification/0*.md)
-	cat specification/0*.md > $@.tmp && mv $@.tmp $@
+# See https://github.com/raghur/mermaid-filter
+# doesn't work with pdf? https://github.com/raghur/mermaid-filter/issues/89
 SPECIFICATION.pdf: $(SPEC)
-	pandoc -T $(TITLE) --pdf-engine=xelatex --toc -s $< -o $@
+	pandoc -T $(TITLE) -F mermaid-filter --pdf-engine=xelatex --toc -s $< -o $@
 SPECIFICATION.html: $(SPEC)
-	pandoc --metadata pagetitle=$(TITLE) -f gfm --toc -s $< -o $@
+	pandoc  -F mermaid-filter --metadata pagetitle=$(TITLE) -f gfm --toc -s $< -o $@
diff --git a/pyproject.toml b/pyproject.toml
index ba7e114f..ecca5197 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -37,7 +37,7 @@ python = "^3.9"
 linkml-runtime = "^1.3.0"
 
 [tool.poetry.dev-dependencies]
-linkml = "^1.3.8"
+linkml = "^1.4.2"
 mkdocs-material = "^8.2.8"
 mkdocs-mermaid2-plugin = "^0.6.0"
 
diff --git a/tests/input/examples/SchemaDefinition-dynamic-enums.yaml b/tests/input/examples/SchemaDefinition-dynamic-enums.yaml
new file mode 100644
index 00000000..a62f3dc1
--- /dev/null
+++ b/tests/input/examples/SchemaDefinition-dynamic-enums.yaml
@@ -0,0 +1,171 @@
+id: https://w3id.org/linkml/examples/enums
+title: Dynamic Enums Example
+name: dynamicenums-example
+description: This demonstrates the use of dynamic enums
+license: https://creativecommons.org/publicdomain/zero/1.0/
+
+prefixes:
+  linkml: https://w3id.org/linkml/
+  ex: https://w3id.org/linkml/examples/enums/
+  sh: https://w3id.org/shacl/
+  bioregistry: https://bioregistry.io/registry/
+  MONDO: http://purl.obolibrary.org/obo/MONDO_
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  loinc: http://loinc.org/
+
+default_prefix: ex
+default_range: string
+
+default_curi_maps:
+    - semweb_context
+
+emit_prefixes:
+  - linkml
+  - rdf
+  - rdfs
+  - xsd
+  - owl
+
+imports:
+  - linkml:types
+
+  
+#==================================
+# Classes                         #
+#==================================
+
+classes:
+  HumanSample:
+    slots:
+      - name
+      - disease
+
+
+#==================================
+# Slots                           #
+#==================================
+
+slots:
+  name:
+    range: string
+  disease:
+    range: HumanDisease
+  vital_status:
+    enum_range:
+      permissible_values:
+        LIVING:
+        DEAD:
+        UNDEAD:
+
+#==================================
+# Enums
+#==================================
+
+enums:
+  Disease:
+    reachable_from:
+      source_ontology: bioregistry:mondo
+      source_nodes:
+        - MONDO:0000001 ## disease or disorder
+      is_direct: false
+      relationship_types:
+        - rdfs:subClassOf
+    minus:
+      permissible_values:
+        root_node:
+          meaning: MONDO:0000001 ## disease or disorder
+
+  HumanDisease:
+    description: Extends the Disease value set, including NCIT neoplasms, excluding non-human diseases
+    inherits:
+      - Disease
+    include:
+      - reachable_from:
+          source_ontology: bioregistry:ncit
+          source_nodes:
+            - NCIT:C3262
+    minus:
+      - reachable_from:
+          source_ontology: bioregistry:mondo
+          source_nodes:
+            - MONDO:0005583 ## non-human animal disease
+          relationship_types:
+            - rdfs:subClassOf
+      - permissible_values:
+          NOT_THIS_ONE:
+            meaning: MONDO:9999
+            description: Example of excluding a single node
+
+  LoincExample:
+    enum_uri: http://hl7.org/fhir/ValueSet/example-intensional
+    see_also:
+      - https://build.fhir.org/valueset-example-intensional.json.html
+    include:
+      - reachable_from:
+          source_ontology: "loinc:"
+          source_nodes:
+            - loinc:LP43571-6
+          is_direct: true
+    minus:
+      concepts:
+        - LOINC:5932-9
+
+  HCAExample:
+    see_also:
+      - https://github.com/linkml/linkml/issues/274
+    include:
+      - reachable_from:
+          source_ontology: bioregistry:go
+          source_nodes:
+            - GO:0007049
+            - GO:0022403
+          include_self: false
+          relationship_types:
+            - rdfs:subClassOf
+    minus:
+      concepts:
+        - LOINC:5932-9
+        
+  BodyPartEnum:
+    reachable_from:
+      source_ontology: obo:cl
+      source_nodes:
+        - CL:0000540 ## neuron
+      include_self: false
+      relationship_types:
+        - rdfs:subClassOf
+        
+  Brand:
+    enum_uri: wikidata:Q431289
+    include:
+      - reachable_from:
+          source_ontology: bioregistry:wikidata
+          source_nodes:
+          - wikidata:Q431289
+          include_self: false
+          relationship_types:
+            - wdp:P31
+            - wdp:P279
+
+  SerumCholesterolExample:
+    description: >
+      This is an example value set that includes all the LOINC codes for serum/plasma cholesterol from v2.36.
+    code_set: http://hl7.org/fhir/ValueSet/serum-cholesterol
+    code_set_version: "1.0.0"
+    pv_formula: CODE
+    include:
+      - concepts:
+          - LP43571-6
+    minus:
+      - concepts:
+          - 5932-9
+    reachable_from:
+      source_ontology: http://loinc.org
+      source_nodes:
+        - LP43571-6
+      relationship_types: null
+      is_direct: true
+      include_self: true
+      traverse_up: false
+    concepts:
+      - http://loinc.org/LP43571-6