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refTFAnalysisCombined.m
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% Time-frequency analysis for different reference techniques
% Single, Bipolar, Average, CSD
% Vinay Shirhatti 16 Sep 2014
%
% modified from refTFAnalysisGeneric in GammaStimDicontinuityProject
% 27 March 2015
%==========================================================================
function refTFAnalysisCombined(subjectName,expDate,protocolName,folderSourceString,gridType,loadProtocolNumber)
if ~exist('folderSourceString','var') folderSourceString='/media/store/'; end
if ~exist('gridType','var') gridType='EEG'; end
if ~exist('loadProtocolNumber','var') loadProtocolNumber = 11; end % Vinay - anything greater than 10 will read the protocolNumber from the saved data
%========================Define folder paths===============================
folderName = fullfile(folderSourceString,'data',subjectName,gridType,expDate,protocolName);
% Get folders
folderExtract = fullfile(folderName,'extractedData');
folderSegment = fullfile(folderName,'segmentedData');
folderLFP = fullfile(folderSegment,'LFP');
folderSpikes = fullfile(folderSegment,'Spikes');
folderBipolar = fullfile(folderLFP,'bipolar');
folderAverage = folderLFP;
folderCSD = fullfile(folderLFP,'csd');
%-----
% load LFP Information
[analogChannelsStored,timeVals,~,analogInputNums] = loadlfpInfo(folderLFP);
[neuralChannelsStored,SourceUnitIDs] = loadspikeInfo(folderSpikes);
% Get Combinations
[~,aValsUnique,eValsUnique,sValsUnique,fValsUnique,oValsUnique,cValsUnique,tValsUnique,rValsUnique,pValsUnique] = loadParameterCombinations(folderExtract);
% Get properties of the Stimulus
% stimResults = loadStimResults(folderExtract);
% Vinay - read the variable loadProtocolNumber as protocolNumber if it is
% less than 11. Otherwise it will be loaded from stimResults. This is so
% that one can directly pass the protocolNumber in case it is not recorded
% in stimResults
if strncmp(protocolName,'CRS',3)
if (loadProtocolNumber < 11)
protocolNumber = loadProtocolNumber;
else
protocolNumber = getProtocolNumber(folderExtract);
end
else
protocolNumber = 11;
end
% Vinay - get the particular gabors that were displayed in the protocol.
gaborsDisplayed = getGaborsDisplayed(folderExtract);
disp(['Gabors displayed in this protocol:' num2str(gaborsDisplayed)]);
% Vinay - if all the gabors were not displayed then assign some default
% value to the null gabor's parameters
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Display main options
% fonts
fontSizeSmall = 10; fontSizeMedium = 12; fontSizeLarge = 16; fontSizeTiny = 8;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Make Panels
panelHeight = 0.3; panelStartHeight = 0.68;
staticPanelWidth = 0.22; staticStartPos = 0.025; % [Vinay] - changed width 0.25 to 0.22
dynamicPanelWidth = 0.23; dynamicStartPos = 0.245; % [Vinay] - changed width 0.25 to 0.23
timingPanelWidth = 0.20; timingStartPos = 0.475; % [Vinay] - changed width 0.25 to 0.20
plotOptionsPanelWidth = 0.15; plotOptionsStartPos = 0.675; % [Vinay] - changed width 0.2 to 0.15
selectParamPanelWidth = 0.15; selectParamStartPos = 0.825; % [Vinay] - adding a panel to select parameters
backgroundColor = 'w';
% Vinay - define a flag for notching the line noise
notchData = 0;
% [Vinay] - define a flag to take bipolar (i.e. diff) signals: V1-V2
useBipolar = 0; % (time domain) electrode1 - electrode2
useDiff = 0; % (freq domain) spectrum1 -spectrum2
% [Vinay]- define a flag to plot SEM for the ERP plots
plotSEM = 1;
% [Vinay] - define a flag to save MP data if it is set
saveMPFlag = 1;
% [Vinay] - define a flag to save HHT data if it is set
saveHHTFlag = 1;
% [Vinay] - define a flag to use badTrials for each electrode separately
useAllBadTrials = 1;
% [Vinay] - define a flag to use intersection of good trials across
% electrodes or else to use individual electrodewise good trials
intersectTrials = 0;
% [Vinay] - set this flag if bipolar data is stored
existsBipolarData = 0;
% [Vinay] - set this flag if log of every trials is to be taken before
% averaging (for TF plots)
takeLogTrial = 0;
% [Vinay] - set this if the bipolar pairs are made using complimentary
% contralateral electrodes and not the nearest neighbour
contralateralNeighbour = 1;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%% Dynamic panel %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
dynamicHeight = 0.06; dynamicGap=0.015; dynamicTextWidth = 0.6;
hDynamicPanel = uipanel('Title','Parameters','fontSize', fontSizeLarge, ...
'Unit','Normalized','Position',[dynamicStartPos panelStartHeight dynamicPanelWidth panelHeight]);
% Analog channel
[analogChannelStringList,analogChannelStringArray] = getAnalogStringFromValues(analogChannelsStored,analogInputNums);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight],...
'Style','text','String','Analog Channel (1:2)','FontSize',fontSizeTiny);
hAnalogChannel = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-(dynamicHeight+dynamicGap) (0.5*(1-dynamicTextWidth)) dynamicHeight], ...
'Style','popup','String',analogChannelStringList,'FontSize',fontSizeTiny);
% [Vinay] - adding analog channel 2 for chosing bipolar signals V1-V2
hAnalogChannel2 = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(dynamicTextWidth+(0.5*(1-dynamicTextWidth))) 1-(dynamicHeight+dynamicGap) (0.5*(1-dynamicTextWidth)) dynamicHeight], ...
'Style','popup','String',(['none|' analogChannelStringList]),'FontSize',fontSizeTiny,'Callback',{@bipolar_Callback});
% Neural channel
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-2*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight],...
'Style','text','String','Neural Channel','FontSize',fontSizeTiny);
if ~isempty(neuralChannelsStored)
neuralChannelString = getNeuralStringFromValues(neuralChannelsStored,SourceUnitIDs);
hNeuralChannel = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-2*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',neuralChannelString,'FontSize',fontSizeTiny);
else
hNeuralChannel = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position', [dynamicTextWidth 1-2*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','text','String','Not found','FontSize',fontSizeTiny);
end
if strncmp(protocolName,'GRF',3)
% Sigma
sigmaString = getStringFromValuesGRF(sValsUnique,1);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-3*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','Sigma (Deg)','FontSize',fontSizeTiny);
hSigma = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-3*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',sigmaString,'FontSize',fontSizeTiny);
% Spatial Frequency
spatialFreqString = getStringFromValuesGRF(fValsUnique,1);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-4*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','Spatial Freq (CPD)','FontSize',fontSizeTiny);
hSpatialFreq = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-4*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',spatialFreqString,'FontSize',fontSizeTiny);
% Orientation
orientationString = getStringFromValuesGRF(oValsUnique,1);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-5*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','Orientation (Deg)','FontSize',fontSizeTiny);
hOrientation = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-5*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',orientationString,'FontSize',fontSizeTiny);
% Contrast
contrastString = getStringFromValuesGRF(cValsUnique,1);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-6*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','Contrast (%)','FontSize',fontSizeTiny);
hContrast = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-6*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',contrastString,'FontSize',fontSizeTiny);
% Temporal Frequency
temporalFreqString = getStringFromValuesGRF(tValsUnique,1);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-7*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','Temporal Freq (Hz)','FontSize',fontSizeTiny);
hTemporalFreq = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-7*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',temporalFreqString,'FontSize',fontSizeTiny);
% Azimuth
azimuthString = getStringFromValuesGRF(aValsUnique,1);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-8*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight],...
'Style','text','String','Azimuth (Deg)','FontSize',fontSizeTiny);
hAzimuth = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-8*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',azimuthString,'FontSize',fontSizeTiny);
% Elevation
elevationString = getStringFromValuesGRF(eValsUnique,1);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-9*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','Elevation (Deg)','FontSize',fontSizeTiny);
hElevation = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position',...
[dynamicTextWidth 1-9*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',elevationString,'FontSize',fontSizeTiny);
%======================================================================
% Select the two parameters whose values are to be varied across
% plots/dimensions
%======================================================================
parametersString = 'NA|azimuth|elevation|sigma|spatialFreq|orientation|contrast|temporalFreq';
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-10*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','vary1','FontSize',fontSizeMedium);
hParam7 = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-10*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny,'Callback',{@resetVaryParams_Callback});
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-12*(dynamicHeight+dynamicGap) dynamicTextWidth dynamicHeight], ...
'Style','text','String','vary2','FontSize',fontSizeMedium);
hParam8 = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[dynamicTextWidth 1-12*(dynamicHeight+dynamicGap) 1-dynamicTextWidth dynamicHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny,'Callback',{@resetVaryParams_Callback});
elseif strncmp(protocolName,'CRS',3)
%[Vinay] - create 3 columns corresponding to the parameters of the 3 gabors
%-Centre, Ring, Surround. Textwidth = 0.4, C,R,S popout - each 0.2 width
labelWidth = 0.4; crsWidth = 0.2; % [Vinay] - labelWidth + 3(crsWidth) = 1
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[labelWidth 1-3*(dynamicHeight+dynamicGap) (3*crsWidth) dynamicHeight],...
'Style','text','String','Surround Ring Centre','FontSize',fontSizeTiny);
for gaborNum = 1:3
% Azimuth
azimuthString = getStringFromValues(aValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-4*(dynamicHeight+dynamicGap) labelWidth dynamicHeight],...
'Style','text','String','Azimuth (Deg)','FontSize',fontSizeTiny);
hAzimuth(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-4*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',azimuthString,'FontSize',fontSizeTiny);
% Elevation
elevationString = getStringFromValues(eValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-5*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Elevation (Deg)','FontSize',fontSizeTiny);
hElevation(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position',...
[(labelWidth+(gaborNum-1)*crsWidth) 1-5*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',elevationString,'FontSize',fontSizeTiny);
% Sigma
sigmaString = getStringFromValues(sValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-6*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Sigma (Deg)','FontSize',fontSizeTiny);
hSigma(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-6*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',sigmaString,'FontSize',fontSizeTiny);
% Spatial Frequency
spatialFreqString = getStringFromValues(fValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-7*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Spatial Freq (CPD)','FontSize',fontSizeTiny);
hSpatialFreq(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-7*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',spatialFreqString,'FontSize',fontSizeTiny);
% Orientation
orientationString = getStringFromValues(oValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-8*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Orientation (Deg)','FontSize',fontSizeTiny);
hOrientation(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-8*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',orientationString,'FontSize',fontSizeTiny);
% Contrast
contrastString = getStringFromValues(cValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-9*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Contrast (%)','FontSize',fontSizeTiny);
hContrast(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-9*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',contrastString,'FontSize',fontSizeTiny);
% Temporal Frequency
temporalFreqString = getStringFromValues(tValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-10*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Temporal Freq (Hz)','FontSize',fontSizeTiny);
hTemporalFreq(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-10*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',temporalFreqString,'FontSize',fontSizeTiny);
% [Vinay] - adding radius and spatial phase cells
% radius
radiusString = getStringFromValues(rValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-11*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Radius (deg)','FontSize',fontSizeTiny);
hRadius(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-11*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',radiusString,'FontSize',fontSizeTiny);
% spatial phase
spatialPhaseString = getStringFromValues(pValsUnique,1, gaborNum);
uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'Position',[0 1-12*(dynamicHeight+dynamicGap) labelWidth dynamicHeight], ...
'Style','text','String','Spatial Phase (Deg)','FontSize',fontSizeTiny);
hSpatialPhase(gaborNum) = uicontrol('Parent',hDynamicPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(labelWidth+(gaborNum-1)*crsWidth) 1-12*(dynamicHeight+dynamicGap) crsWidth dynamicHeight], ...
'Style','popup','String',spatialPhaseString,'FontSize',fontSizeTiny);
end
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%% Timing panel %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
timingHeight = 0.1; timingTextWidth = 0.5; timingBoxWidth = 0.20; % [Vinay] - changed width from 0.25 to 0.20
hTimingPanel = uipanel('Title','Timing','fontSize', fontSizeLarge, ...
'Unit','Normalized','Position',[timingStartPos panelStartHeight timingPanelWidth panelHeight]);
% Vinay - changed these values for EEG
signalRange = [-0.6 1.0];
fftRange = [0 120];
baseline = [-0.5 0];
stimPeriod = [0.25 0.75];
% Signal Range
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[0 1-timingHeight timingTextWidth timingHeight], ...
'Style','text','String','Parameter','FontSize',fontSizeMedium);
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[timingTextWidth 1-timingHeight timingBoxWidth timingHeight], ...
'Style','text','String','Min','FontSize',fontSizeMedium);
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[timingTextWidth+timingBoxWidth 1-timingHeight timingBoxWidth timingHeight], ...
'Style','text','String','Max','FontSize',fontSizeMedium);
% Stim Range
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[0 1-3*timingHeight timingTextWidth timingHeight], ...
'Style','text','String','Stim Range (s)','FontSize',fontSizeSmall);
hStimMin = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth 1-3*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(signalRange(1)),'FontSize',fontSizeSmall);
hStimMax = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth+timingBoxWidth 1-3*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(signalRange(2)),'FontSize',fontSizeSmall);
% FFT Range
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[0 1-5*timingHeight timingTextWidth timingHeight], ...
'Style','text','String','FFT Range (Hz)','FontSize',fontSizeSmall);
hFFTMin = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth 1-5*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(fftRange(1)),'FontSize',fontSizeSmall);
hFFTMax = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth+timingBoxWidth 1-5*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(fftRange(2)),'FontSize',fontSizeSmall);
% Baseline
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[0 1-6*timingHeight timingTextWidth timingHeight], ...
'Style','text','String','Basline (s)','FontSize',fontSizeSmall);
hBaselineMin = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth 1-6*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(baseline(1)),'FontSize',fontSizeSmall);
hBaselineMax = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth+timingBoxWidth 1-6*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(baseline(2)),'FontSize',fontSizeSmall);
% Stim Period
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[0 1-7*timingHeight timingTextWidth timingHeight], ...
'Style','text','String','Stim period (s)','FontSize',fontSizeSmall);
hStimPeriodMin = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth 1-7*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(stimPeriod(1)),'FontSize',fontSizeSmall);
hStimPeriodMax = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth+timingBoxWidth 1-7*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(stimPeriod(2)),'FontSize',fontSizeSmall);
% Y Range
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[0 1-8*timingHeight timingTextWidth timingHeight], ...
'Style','text','String','Y Range','FontSize',fontSizeSmall);
hYMin = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth 1-8*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String','0','FontSize',fontSizeSmall);
hYMax = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth+timingBoxWidth 1-8*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String','1','FontSize',fontSizeSmall);
% STA length
fBandLow = 30; fBandHigh = 80;
uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'Position',[0 1-9*timingHeight timingTextWidth timingHeight], ...
'Style','text','String','freqBand range','FontSize',fontSizeSmall);
hfBandLow = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth 1-9*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(fBandLow),'FontSize',fontSizeSmall);
hfBandHigh = uicontrol('Parent',hTimingPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[timingTextWidth+timingBoxWidth 1-9*timingHeight timingBoxWidth timingHeight], ...
'Style','edit','String',num2str(fBandHigh),'FontSize',fontSizeSmall);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%% Plot Options %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
plotOptionsHeight = 0.1;
hPlotOptionsPanel = uipanel('Title','Plotting Options','fontSize', fontSizeLarge, ...
'Unit','Normalized','Position',[plotOptionsStartPos panelStartHeight plotOptionsPanelWidth panelHeight]);
% Chose color
[colorString, colorNames] = getColorString;
uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 1-plotOptionsHeight 0.6 plotOptionsHeight], ...
'Style','text','String','Color','FontSize',fontSizeTiny);
hChooseColor = uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[0.6 1-plotOptionsHeight 0.4 plotOptionsHeight], ...
'Style','popup','String',colorString,'FontSize',fontSizeTiny);
% Vinay - adding an option to adjust lineWidth of plots
linewidths = [1,1.5,2,2.5,3];
linewidthString = '1|1.5|2|2.5|3|';
uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 1-2*plotOptionsHeight 0.6 plotOptionsHeight], ...
'Style','text','String','lineWidth','FontSize',fontSizeTiny);
hChooseWidth = uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, ...
'Position',[0.6 1-2*plotOptionsHeight 0.4 plotOptionsHeight], ...
'Style','popup','String',linewidthString,'FontSize',fontSizeTiny);
% Analysis Type
analysisTypeString = 'ERP|FFT|delta FFT|Band Power';
uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 1-3*plotOptionsHeight 0.6 plotOptionsHeight], ...
'Style','text','String','Analysis Type','FontSize',fontSizeSmall);
hAnalysisType = uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[0.6 1-3*plotOptionsHeight 0.4 plotOptionsHeight], ...
'Style','popup','String',analysisTypeString,'FontSize',fontSizeSmall);
% Vinay - adding a toggle button to use notched data
hNotchData = uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 5*plotOptionsHeight 1 plotOptionsHeight], ...
'Style','togglebutton','String','raw/lineNoiseRemoved','FontSize',fontSizeMedium, ...
'Callback',{@notch_Callback});
uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 4*plotOptionsHeight 1 plotOptionsHeight], ...
'Style','pushbutton','String','cla','FontSize',fontSizeMedium, ...
'Callback',{@cla_Callback});
hHoldOn = uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 3*plotOptionsHeight 1 plotOptionsHeight], ...
'Style','togglebutton','String','hold on','FontSize',fontSizeMedium, ...
'Callback',{@holdOn_Callback});
uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 2*plotOptionsHeight 1 plotOptionsHeight], ...
'Style','pushbutton','String','rescale Y','FontSize',fontSizeMedium, ...
'Callback',{@rescaleY_Callback});
uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 plotOptionsHeight 1 plotOptionsHeight], ...
'Style','pushbutton','String','rescale X','FontSize',fontSizeMedium, ...
'Callback',{@rescaleData_Callback});
uicontrol('Parent',hPlotOptionsPanel,'Unit','Normalized', ...
'Position',[0 0 1 plotOptionsHeight], ...
'Style','pushbutton','String','plot','FontSize',fontSizeMedium, ...
'Callback',{@plotData_Callback});
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% [Vinay] - adding a panel to select the parameters for the plots
% only for CRS
if strncmp(protocolName,'CRS',3)
selectParamHeight = 0.1; selectParamWidth = 0.5; selectParamBoxWidth = 0.20; % [Vinay] - changed width from 0.25 to 0.20
textWidth = 0.4; selGWidth = 0.2; selPWidth = 0.4;
hSelectParamPanel = uipanel('Title','Select Parameters','fontSize', fontSizeLarge, ...
'Unit','Normalized','Position',[selectParamStartPos panelStartHeight selectParamPanelWidth panelHeight]);
parametersString = 'NA|azimuth|elevation|sigma|spatialFreq|orientation|contrast|temporalFreq|radius|spatialPhase';
gaborString = 'NA|C|R|S';
%parameter1
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','param1','FontSize',fontSizeSmall);
hGabor1 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny);
hParam1 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny);
%parameter2
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-2*selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','param2','FontSize',fontSizeSmall);
hGabor2 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-2*selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny);
hParam2 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-2*selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny);
%parameter3
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-3*selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','param3','FontSize',fontSizeSmall);
hGabor3 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-3*selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny);
hParam3 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-3*selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny);
%parameter4
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-4*selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','param4','FontSize',fontSizeSmall);
hGabor4 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-4*selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny);
hParam4 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-4*selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny);
%parameter5
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-5*selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','param5','FontSize',fontSizeSmall);
hGabor5 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-5*selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny);
hParam5 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-5*selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny);
%parameter6
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-6*selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','param6','FontSize',fontSizeSmall);
hGabor6 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-6*selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny);
hParam6 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-6*selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny);
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-7*selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','vary1','FontSize',fontSizeMedium);
hGabor7 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-7*selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny,'Callback',{@resetVaryParams_Callback});
hParam7 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-7*selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny,'Callback',{@resetVaryParams_Callback});
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0 1-8*selectParamHeight textWidth selectParamHeight], ...
'Style','text','String','vary2','FontSize',fontSizeMedium);
hGabor8 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[textWidth 1-8*selectParamHeight selGWidth selectParamHeight], ...
'Style','popup','String',gaborString,'FontSize',fontSizeTiny,'Callback',{@resetVaryParams_Callback});
hParam8 = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(textWidth+selGWidth) 1-8*selectParamHeight selPWidth selectParamHeight], ...
'Style','popup','String',parametersString,'FontSize',fontSizeTiny,'Callback',{@resetVaryParams_Callback});
% check box - 'show default'. This will load default parameters as per the
% specific protocol being used
useDefParams = 0; % by default don't use the default parameters
hUseDefParams = uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[0.1 1-9*selectParamHeight 0.8 selectParamHeight], ...
'Style','checkbox','String','Show default parameters','FontSize',fontSizeTiny, 'Callback',{@useDefParams_Callback});
% display the specific protocol being used
protocolNameString = {'NoneProtocol';'RingProtocol';'ContrastRingProtocol';'DualContrastProtocol'; ...
'DualOrientationProtocol';'DualPhaseProtocol';'OrientationRingProtocol';'PhaseRingProtocol'; ...
'Drifting Ring Protocol';'CrossOrientationProtocol';'AnnulusRingProtocol'};
% protocolNumber = getProtocolNumber(folderExtract);
uicontrol('Parent',hSelectParamPanel,'Unit','Normalized', ...
'Position',[0.1 1-10*selectParamHeight 0.8 selectParamHeight], ...
'Style','text','String',protocolNameString(protocolNumber+1),'FontSize',fontSizeTiny,'FontWeight','bold');
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Get plots and message handles
% Get electrode array information
gridLayout = 1; % 64 electrodes
electrodeGridPos = [staticStartPos panelStartHeight staticPanelWidth panelHeight];
hElectrodes = showElectrodeLocations(electrodeGridPos,analogChannelsStored(get(hAnalogChannel,'val')), ...
colorNames(get(hChooseColor,'val')),[],1,0,gridType,subjectName,gridLayout);
% Set up the plot box and its dimensions
startXPos = staticStartPos; endXPos = 0.95; startYPos = 0.05; endYPos = 0.60;
centerGap = 0.05;
plotsWidthX = (endXPos-startXPos-centerGap);
plotsWidthY = (endYPos-startYPos-centerGap);
gap = 0.02; gapSmall = 0.002;
varyGridPos=[startXPos startYPos endXPos endYPos];
uicontrol('Unit','Normalized','Position',[0 0.975 1 0.025],...
'Style','text','String',[subjectName expDate protocolName],'FontSize',fontSizeLarge);
if strncmp(protocolName,'CRS',3)
% [Vinay] - load default parameters
set(hGabor1,'val',4); % 4 => S
set(hGabor2,'val',4);
set(hGabor3,'val',3); % 3 => R
set(hGabor4,'val',3);
set(hGabor5,'val',2); % 2 => C
set(hGabor6,'val',2);
set(hGabor7,'val',1); % 1 => NA
set(hGabor8,'val',1);
set(hParam1,'val',7); % 7 => cont (surr)
set(hParam2,'val',6); % 6 => ori
set(hParam3,'val',7); % 7 => cont (ring)
set(hParam4,'val',9); % 9 => rad
set(hParam5,'val',7); % 7 => cont (centre)
set(hParam6,'val',6); % 6 => ori
set(hParam7,'val',1); % 1 => NA
set(hParam8,'val',1);
adjFactor = 5;
gabor7 = adjFactor - get(hGabor7,'val');
gabor8 = adjFactor - get(hGabor8,'val');
param7 = get(hParam7, 'val');
param8 = get(hParam8, 'val');
hVaryParamPlot = getPlotHandles(length(getValsUnique(gabor7, param7)),length(getValsUnique(gabor8, param8)),varyGridPos,gapSmall);
elseif strncmp(protocolName,'GRF',3)
param7 = get(hParam7, 'val');
param8 = get(hParam8, 'val');
gabor7 = []; gabor8 = [];
hVaryParamPlot = getPlotHandles(length(getValsUniqueGRF(param7)),length(getValsUniqueGRF(param8)),varyGridPos,gapSmall);
end
%**************************************************************************
% [Vinay] - TIME-FREQUENCY ANALYSIS
% Plot the time-frequency distributions on a separate figure
%~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hTFfig = figure(2);
% Define variables/flags required in TF analysis with their default values
plotStyle = 1; % pcolor, imagesc, raw
spectrumType = 1; % raw, difference
cmin = -1; cmax = 3; % caxis limits
tfMethod = 1; % MTM, MP
% Default MTM params
mtmParams.Fs = 2000;
mtmParams.tapers=[2 3]; % [1 1] case is simply stft with dpss window
mtmParams.trialave=0;
mtmParams.err=0;
mtmParams.pad=-1;
movingWin = [0.4 0.01];
% Default MP parameters
numAtomsMP = 100;
% Default HHT parameters
Nstd = 0; % for emd case as default
NE = 1; % for emd case as default
gaussFtr = 7;
%__________________________________________________________________________
% The tf plots panel for the 6 chosen parameters
% ---------------tfPlotsPanel----------------------------------------------
%--------------------------------------------------------------------------
xGap = 0.01; yGap = 0.01;
tfPlotsHeight = 0.14; tfPlotsGap =0.02;
tfPanelWidth = 0.98; tfPanelHeight = 0.81;
hTFPlotsPanel = uipanel('Title','TF Plots','fontSize', fontSizeLarge, ...
'Unit','Normalized','Position',[xGap yGap tfPanelWidth tfPanelHeight]);
startXPos = 2*xGap; startYPos = 2*yGap; % start from left bottom corner
varyGridTFPos = [startXPos startYPos tfPanelWidth-2*xGap tfPanelHeight-5*yGap];
if strncmp(protocolName,'CRS',3)
hVaryParamTFPlot = getPlotHandles(length(getValsUnique(gabor7, param7)),length(getValsUnique(gabor8, param8)),varyGridTFPos,gapSmall);
elseif strncmp(protocolName,'GRF',3)
hVaryParamTFPlot = getPlotHandles(length(getValsUniqueGRF(param7)),length(getValsUniqueGRF(param8)),varyGridTFPos,gapSmall);
end
%__________________________________________________________________________
% Parameters selection panels for TF methods
% ---------------tfParamsPanel----------------------------------------------
%--------------------------------------------------------------------------
xGap = 0.002;
tfParamsHeight = 1-(tfPanelHeight + yGap); tfParamsGap = tfPlotsGap;
tfParamsWidth = 0.4 - xGap; tfParamsPanelHeight = tfParamsHeight+tfPlotsGap;
tfParamsPanelxStart = (1-tfParamsWidth);
tfParamsPanelyStart = (1-tfParamsPanelHeight);
% hTFParamsPanel = uipanel('Title','TF Parameters','fontSize', fontSizeLarge, ...
% 'Unit','Normalized','Position',[tfParamsPanelxStart tfParamsPanelyStart tfParamsWidth tfParamsPanelHeight]);
textWidth = 0.24;
textHeight = 0.18;
% ====================TF Params Panel=====================================
hTFParamsPanel = uipanel('Title','MTM, MP, HHT Parameters','fontSize', fontSizeMedium, ...
'Unit','Normalized','Position',[(tfParamsPanelxStart) (tfParamsPanelyStart) tfParamsWidth/2 tfParamsPanelHeight]);
% Parameters to divide the panel into rows and columns
xPanel1 = 0; xPanel2 = 0.5;
% Fs, sampling frequency
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-textHeight) textWidth textHeight], ...
'Style','text','String','Fs','FontSize',fontSizeSmall);
hMTMFs = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+textWidth) (1-textHeight) textWidth textHeight], ...
'Style','edit','String',mtmParams.Fs,'FontSize',fontSizeTiny,'Callback',{@resetMTMParams_Callback}); % initialize with default Fs = 2000
%------------------MTM parameters-----------------------
% Tapers TW
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-2*textHeight-tfParamsGap) textWidth textHeight], ...
'Style','text','String','TW','FontSize',fontSizeSmall);
hMTMTapersTW = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+textWidth) (1-2*textHeight-tfParamsGap) textWidth textHeight], ...
'Style','edit','String',mtmParams.tapers(1),'FontSize',fontSizeTiny,'Callback',{@resetMTMParams_Callback}); % initialize TW = 1
% Tapers 'k'
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-3*textHeight-2*tfParamsGap) textWidth textHeight], ...
'Style','text','String','k','FontSize',fontSizeSmall);
hMTMTapersK = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+textWidth) (1-3*textHeight-2*tfParamsGap) textWidth textHeight], ...
'Style','edit','String',mtmParams.tapers(2),'FontSize',fontSizeTiny,'Callback',{@resetMTMParams_Callback}); % initialize k = 1
% Window length
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-4*textHeight-3*tfParamsGap) textWidth textHeight], ...
'Style','text','String','wLen','FontSize',fontSizeSmall);
hMTMwLen = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+textWidth) (1-4*textHeight-3*tfParamsGap) textWidth textHeight], ...
'Style','edit','String',movingWin(1),'FontSize',fontSizeTiny,'Callback',{@resetMTMParams_Callback}); % initialize wLen = 0.1 s
% Window translation step
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-5*textHeight-4*tfParamsGap) textWidth textHeight], ...
'Style','text','String','wStep','FontSize',fontSizeSmall);
hMTMwStep = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+textWidth) (1-5*textHeight-4*tfParamsGap) textWidth textHeight], ...
'Style','edit','String',movingWin(2),'FontSize',fontSizeTiny,'Callback',{@resetMTMParams_Callback}); % initialize wStep = 0.01 s
%----MP parameters-----
% number of atoms for reconstruction
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel2 (1-textHeight) textWidth textHeight], ...
'Style','text','String','numAtoms MP','FontSize',fontSizeSmall);
hMPnumAtoms = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel2+textWidth) (1-textHeight) textWidth textHeight], ...
'Style','edit','String',numAtomsMP,'FontSize',fontSizeTiny,'Callback',{@resetMPParams_Callback}); % initialize numAtoms = 100
%----HHT parameters-----
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel2 (1-3*textHeight) 2*textWidth textHeight], ...
'Style','text','String','HHT parameters','FontSize',fontSizeSmall);
% Noise ratio
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel2 (1-4*textHeight) textWidth textHeight], ...
'Style','text','String','Noise ratio','FontSize',fontSizeTiny);
hHHTnstd = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel2+textWidth) (1-4*textHeight) textWidth textHeight], ...
'Style','edit','String',Nstd,'FontSize',fontSizeTiny,'Callback',{@resetHHTParams_Callback}); % initialize Nstd = 0
% Ensemble number
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel2 (1-5*textHeight) textWidth textHeight], ...
'Style','text','String','Ensemble number','FontSize',fontSizeTiny);
hHHTne = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel2+textWidth) (1-5*textHeight) textWidth textHeight], ...
'Style','edit','String',NE,'FontSize',fontSizeTiny,'Callback',{@resetHHTParams_Callback}); % initialize Nstd = 0
% Gaussian filtering
uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'Position',[xPanel2 (1-6*textHeight) textWidth textHeight], ...
'Style','text','String','Gaussian filter','FontSize',fontSizeTiny);
hHHTgaussFtr = uicontrol('Parent',hTFParamsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel2+textWidth) (1-6*textHeight) textWidth textHeight], ...
'Style','edit','String',gaussFtr,'FontSize',fontSizeTiny,'Callback',{@resetHHTParams_Callback}); % initialize Nstd = 0
%========= Plotting settings ==============================
hTFPlotSettingsPanel = uipanel('Title','TF Plot settings','fontSize', fontSizeMedium, ...
'Unit','Normalized','Position',[(tfParamsPanelxStart+(tfParamsWidth/2)+xGap) (tfParamsPanelyStart) ((tfParamsWidth/2)-xGap) tfParamsPanelHeight]);
% pcolor or imagesc or raw
uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-textHeight) 2*textWidth textHeight], ...
'Style','text','String','Plot style','FontSize',fontSizeSmall);
hTFPlotStyle = uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+2*textWidth) (1-textHeight) 2*textWidth textHeight], ...
'Style','pop','String','pcolor|imagesc|line','FontSize',fontSizeTiny,'Callback',{@resetTFSettings_Callback}); % initialize style = pcolor
% spectrum type: raw or difference (change from baseline)
uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-2*textHeight-tfParamsGap) 2*textWidth textHeight], ...
'Style','text','String','Spectrum type','FontSize',fontSizeSmall);
hTFSpectrumType = uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+2*textWidth) (1-2*textHeight-tfParamsGap) 2*textWidth textHeight], ...
'Style','pop','String','raw|difference','FontSize',fontSizeTiny,'Callback',{@resetTFSettings_Callback}); % initialize style = pcolor
% color axis settings
uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-3*textHeight-2*tfParamsGap) textWidth textHeight], ...
'Style','text','String','cmin','FontSize',fontSizeSmall);
hTFcmin = uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+textWidth) (1-3*textHeight-2*tfParamsGap) textWidth textHeight], ...
'Style','edit','String',cmin,'FontSize',fontSizeTiny,'Callback',{@rescaleCaxis_Callback}); % initialize cmin = -1
uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'Position',[xPanel2 (1-3*textHeight-2*tfParamsGap) textWidth textHeight], ...
'Style','text','String','cmax','FontSize',fontSizeSmall);
hTFcmax = uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel2+textWidth) (1-3*textHeight-2*tfParamsGap) textWidth textHeight], ...
'Style','edit','String',cmax,'FontSize',fontSizeTiny,'Callback',{@rescaleCaxis_Callback}); % initialize cmax = 3
% Method used
uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-5*textHeight-4*tfParamsGap) 2*textWidth 1.5*textHeight], ...
'Style','text','String','Method','FontSize',fontSizeMedium);
hTFPlotMethod = uicontrol('Parent',hTFPlotSettingsPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+2*textWidth) (1-5*textHeight-4*tfParamsGap) 2*textWidth 1.5*textHeight], ...
'Style','pop','String','MTM|MP|HHT','FontSize',fontSizeTiny,'Callback',{@resetTFSettings_Callback}); % initialize method = MTM
% ------------ Reference Selection Panel ----------------------
tfRefPanelxStart = 0.05; tfRefWidth = 0.4;
% Parameters to divide the panel into rows and columns
xPanel1 = 0; xPanel2 = 0.5;
hRefPanel = uipanel('Title','Reference Selection','fontSize', fontSizeMedium, ...
'Unit','Normalized','Position',[(tfRefPanelxStart) (tfParamsPanelyStart) tfRefWidth/2 tfParamsPanelHeight]);
% reference type: single,bipolar,average,csd
refType = 1; % default value - single reference
uicontrol('Parent',hRefPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-textHeight) 2*textWidth textHeight], ...
'Style','text','String','REF scheme:','FontSize',fontSizeSmall);
hRefType = uicontrol('Parent',hRefPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+2*textWidth) (1-textHeight) textWidth textHeight], ...
'Style','pop','String','single|bipolar|average|csd','FontSize',fontSizeTiny,'Callback',{@resetRefType_Callback});
% Analog channel
uicontrol('Parent',hRefPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-2*textHeight-tfParamsGap) 2*textWidth textHeight],...
'Style','text','String','Analog Channel','FontSize',fontSizeTiny);
hRefAnalogChannel1 = uicontrol('Parent',hRefPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+2*textWidth) (1-2*textHeight-tfParamsGap) textWidth textHeight], ...
'Style','popup','String',analogChannelStringList,'FontSize',fontSizeTiny);
analogChannelStringList2 = ['none|' analogChannelStringList];
hRefAnalogChannel2 = uicontrol('Parent',hRefPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+3*textWidth) (1-2*textHeight-tfParamsGap) textWidth textHeight], ...
'Style','popup','String',analogChannelStringList2,'FontSize',fontSizeTiny','Callback',{@diff_Callback});
% Combine electrodes
combineString = 'none|all|occipital|parietal|temporal|frontal|central';
uicontrol('Parent',hRefPanel,'Unit','Normalized', ...
'Position',[xPanel1 (1-3*textHeight-tfParamsGap) 2*textWidth textHeight],...
'Style','text','String','Combine','FontSize',fontSizeTiny);
hRefCombineChannel = uicontrol('Parent',hRefPanel,'Unit','Normalized', ...
'BackgroundColor', backgroundColor, 'Position', ...
[(xPanel1+2*textWidth) (1-3*textHeight-tfParamsGap) textWidth textHeight], ...