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Hello, I'm trying to use vegabrite to generate visuals for genomic structural variants, which in this case are just glorified gantt charts. However, using the package, I get regular errors when attempting to do this.
The error is
Warning message:
Invalid schema for object passed to or created by modify_inner_spec.vegaspec_unit
Here is a MWE following the gantt chart as interpreted from the VegaLite documention
Interestingly, when I change the datatype to Ordinal, it does plot more of data:
However it forbids me from modifying the axis labels or number of ticks in an effort to hack it. In addition, it doesn't let me set an arbitrary range for the X axis to be the length of the chromosome (the size column in svfilt).
Is this a bug or user error? I am grateful for any wisdom or insight you can provide, thank you.
The text was updated successfully, but these errors were encountered:
Hello, I'm trying to use
vegabrite
to generate visuals for genomic structural variants, which in this case are just glorified gantt charts. However, using the package, I get regular errors when attempting to do this.The error is
Here is a MWE following the gantt chart as interpreted from the VegaLite documention
Further, a more advanced example using real data doesn't plot everything and throws the same warning/error.
Interestingly, when I change the datatype to Ordinal, it does plot more of data:
However it forbids me from modifying the axis labels or number of ticks in an effort to hack it. In addition, it doesn't let me set an arbitrary range for the X axis to be the length of the chromosome (the
size
column insvfilt
).Is this a bug or user error? I am grateful for any wisdom or insight you can provide, thank you.
The text was updated successfully, but these errors were encountered: