diff --git a/config/config_flu_genbank.yaml b/config/config_flu_genbank.yaml index f99eb7ff..0702924a 100644 --- a/config/config_flu_genbank.yaml +++ b/config/config_flu_genbank.yaml @@ -92,6 +92,7 @@ report_group_references: H5NX: A-Goose-Guangdong-1-96 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # Surveillance plot options # see: workflow_main/scripts/surveillance.py @@ -110,6 +111,7 @@ surv_group_references: H5NX: A-Goose-Guangdong-1-96 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # --------------- # DATABASE @@ -151,6 +153,7 @@ default_references: H5NX: A-Goose-Guangdong-1-96 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # Home page show_home_banner: false diff --git a/config/config_flu_gisaid.yaml b/config/config_flu_gisaid.yaml index b8b9fe7d..c5973688 100644 --- a/config/config_flu_gisaid.yaml +++ b/config/config_flu_gisaid.yaml @@ -120,6 +120,7 @@ report_group_references: H5NX: A-Viet-Nam-1203-2004 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # Surveillance plot options # see: workflow_main/scripts/surveillance.py @@ -138,6 +139,7 @@ surv_group_references: H5NX: A-Viet-Nam-1203-2004 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # --------------- # DATABASE @@ -180,6 +182,7 @@ default_references: H5NX: A-Viet-Nam-1203-2004 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # Home page show_home_banner: false diff --git a/config/config_flu_gisaid_dev.yaml b/config/config_flu_gisaid_dev.yaml index ef08713b..4e8daa7d 100644 --- a/config/config_flu_gisaid_dev.yaml +++ b/config/config_flu_gisaid_dev.yaml @@ -125,6 +125,7 @@ report_group_references: H5NX: A-Goose-Guangdong-1-96 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # Surveillance plot options # see: workflow_main/scripts/surveillance.py @@ -143,6 +144,7 @@ surv_group_references: H5NX: A-Goose-Guangdong-1-96 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # --------------- # DATABASE @@ -185,6 +187,7 @@ default_references: H5NX: A-Goose-Guangdong-1-96 H7NX: A-Shanghai-02-2013 H9NX: A-Hong-Kong-1073-99 + H10NX: A-Jiangsu-428-2021 # Home page show_home_banner: false diff --git a/static_data/flu/alignments/H10N8_1.dna b/static_data/flu/alignments/H10N8_1.dna new file mode 100644 index 00000000..aded21a0 Binary files /dev/null and b/static_data/flu/alignments/H10N8_1.dna differ diff --git a/static_data/flu/alignments/H10N8_2.dna b/static_data/flu/alignments/H10N8_2.dna new file mode 100644 index 00000000..8e295b4a Binary files /dev/null and b/static_data/flu/alignments/H10N8_2.dna differ diff --git a/static_data/flu/alignments/H10N8_3.dna b/static_data/flu/alignments/H10N8_3.dna new file mode 100644 index 00000000..c3b0e184 Binary files /dev/null and b/static_data/flu/alignments/H10N8_3.dna differ diff --git a/static_data/flu/alignments/H10N8_4.dna b/static_data/flu/alignments/H10N8_4.dna new file mode 100644 index 00000000..8ae5d143 Binary files /dev/null and b/static_data/flu/alignments/H10N8_4.dna differ diff --git a/static_data/flu/alignments/H10N8_5.dna b/static_data/flu/alignments/H10N8_5.dna new file mode 100644 index 00000000..ea34a699 Binary files /dev/null and b/static_data/flu/alignments/H10N8_5.dna differ diff --git a/static_data/flu/alignments/H10N8_6.dna b/static_data/flu/alignments/H10N8_6.dna new file mode 100644 index 00000000..8eea2dca Binary files /dev/null and b/static_data/flu/alignments/H10N8_6.dna differ diff --git a/static_data/flu/alignments/H10N8_7.dna b/static_data/flu/alignments/H10N8_7.dna new file mode 100644 index 00000000..853970f8 Binary files /dev/null and b/static_data/flu/alignments/H10N8_7.dna differ diff --git a/static_data/flu/alignments/H10N8_8.dna b/static_data/flu/alignments/H10N8_8.dna new file mode 100644 index 00000000..916076b1 Binary files /dev/null and b/static_data/flu/alignments/H10N8_8.dna differ diff --git a/static_data/flu/alignments/H7N2_1_NC_026422.dna b/static_data/flu/alignments/H7N2_1_NC_026422.dna index d4973472..386fd4d0 100644 Binary files a/static_data/flu/alignments/H7N2_1_NC_026422.dna and b/static_data/flu/alignments/H7N2_1_NC_026422.dna differ diff --git a/static_data/flu/alignments/H7N2_2_NC_026423.dna b/static_data/flu/alignments/H7N2_2_NC_026423.dna index 022b7b54..7f3758ba 100644 Binary files a/static_data/flu/alignments/H7N2_2_NC_026423.dna and b/static_data/flu/alignments/H7N2_2_NC_026423.dna differ diff --git a/static_data/flu/alignments/H7N2_3_NC_026424.dna b/static_data/flu/alignments/H7N2_3_NC_026424.dna index 1b8a0d55..9a0f8a06 100644 Binary files a/static_data/flu/alignments/H7N2_3_NC_026424.dna and b/static_data/flu/alignments/H7N2_3_NC_026424.dna differ diff --git a/static_data/flu/alignments/H7N2_4_NC_026425.dna b/static_data/flu/alignments/H7N2_4_NC_026425.dna index 7b2dc5b1..00130b2d 100644 Binary files a/static_data/flu/alignments/H7N2_4_NC_026425.dna and b/static_data/flu/alignments/H7N2_4_NC_026425.dna differ diff --git a/static_data/flu/alignments/H7N2_5_NC_026426.dna b/static_data/flu/alignments/H7N2_5_NC_026426.dna index d5307741..7957ec93 100644 Binary files a/static_data/flu/alignments/H7N2_5_NC_026426.dna and b/static_data/flu/alignments/H7N2_5_NC_026426.dna differ diff --git a/static_data/flu/alignments/H7N2_6_NC_026429.dna b/static_data/flu/alignments/H7N2_6_NC_026429.dna index 86ec9022..4ce07531 100644 Binary files a/static_data/flu/alignments/H7N2_6_NC_026429.dna and b/static_data/flu/alignments/H7N2_6_NC_026429.dna differ diff --git a/static_data/flu/alignments/H7N2_7_NC_026427.dna b/static_data/flu/alignments/H7N2_7_NC_026427.dna index e1cdaed1..cb56e7b9 100644 Binary files a/static_data/flu/alignments/H7N2_7_NC_026427.dna and b/static_data/flu/alignments/H7N2_7_NC_026427.dna differ diff --git a/static_data/flu/alignments/H7N2_8_NC_026428.dna b/static_data/flu/alignments/H7N2_8_NC_026428.dna index da5b7845..fab1bfb9 100644 Binary files a/static_data/flu/alignments/H7N2_8_NC_026428.dna and b/static_data/flu/alignments/H7N2_8_NC_026428.dna differ diff --git a/static_data/flu/alignments/HA_all.praln b/static_data/flu/alignments/HA_all.praln index 162a427f..d3cc17d3 100644 Binary files a/static_data/flu/alignments/HA_all.praln and b/static_data/flu/alignments/HA_all.praln differ diff --git a/static_data/flu/genes.csv b/static_data/flu/genes.csv index c66389ef..2ec4263f 100644 --- a/static_data/flu/genes.csv +++ b/static_data/flu/genes.csv @@ -138,6 +138,16 @@ H7NX,A-Shanghai-02-2013,M1,7,1..759,1,0,[], H7NX,A-Shanghai-02-2013,M2,7,1..26;715..982,1,0,[], H7NX,A-Shanghai-02-2013,NEP,8,1..30;503..838,1,0,[], H7NX,A-Shanghai-02-2013,NS1,8,1..654,1,0,[], +H7NX,A-Anhui-1-2013,PB2,1,1..2280,1,0,[], +H7NX,A-Anhui-1-2013,PB1,2,1..2274,1,0,[], +H7NX,A-Anhui-1-2013,PA,3,1..2151,1,0,[], +H7NX,A-Anhui-1-2013,HA,4,1..1683,1,18,"[{""name"": ""signal peptide"", ""ranges"": [[1, 18]]}, {""name"": ""HA1"", ""ranges"": [[19, 339]]}, {""name"": ""HA2"", ""ranges"": [[340, 560]]}]", +H7NX,A-Anhui-1-2013,NP,5,1..1497,1,0,[], +H7NX,A-Anhui-1-2013,NA,6,1..1398,1,0,[], +H7NX,A-Anhui-1-2013,M1,7,1..759,1,0,[], +H7NX,A-Anhui-1-2013,M2,7,1..26;715..982,1,0,[], +H7NX,A-Anhui-1-2013,NEP,8,1..30;503..838,1,0,[], +H7NX,A-Anhui-1-2013,NS1,8,1..654,1,0,[], H9NX,A-Hong-Kong-1073-99,PB2,1,28..2307,1,0,[], H9NX,A-Hong-Kong-1073-99,PB1,2,24..2300,1,0,[], H9NX,A-Hong-Kong-1073-99,PA,3,21..2171,1,0,[], @@ -148,6 +158,26 @@ H9NX,A-Hong-Kong-1073-99,M1,7,33..791,1,0,[], H9NX,A-Hong-Kong-1073-99,M2,7,33..59;748..1014,1,0,[], H9NX,A-Hong-Kong-1073-99,NEP,8,27..56;529..864,1,0,[], H9NX,A-Hong-Kong-1073-99,NS1,8,27..719,1,0,[], +H10NX,A-Jiangsu-428-2021,PB2,1,28..2307,1,0,[], +H10NX,A-Jiangsu-428-2021,PB1,2,25..2298,1,0,[], +H10NX,A-Jiangsu-428-2021,PA,3,25..2175,1,0,[], +H10NX,A-Jiangsu-428-2021,HA,4,20..1705,1,16,"[{""name"": ""signal peptide"", ""ranges"": [[1, 16]]}, {""name"": ""HA1"", ""ranges"": [[17, 340]]}, {""name"": ""HA2"", ""ranges"": [[341, 561]]}]", +H10NX,A-Jiangsu-428-2021,NP,5,46..1542,1,0,[], +H10NX,A-Jiangsu-428-2021,NA,6,19..1428,1,0,[], +H10NX,A-Jiangsu-428-2021,M1,7,26..784,1,0,[], +H10NX,A-Jiangsu-428-2021,M2,7,26..51;740..1007,1,0,[], +H10NX,A-Jiangsu-428-2021,NS1,8,27..680,1,0,[], +H10NX,A-Jiangsu-428-2021,NEP,8,27..56;529..864,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,PB2,1,1..2280,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,PB1,2,1..2274,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,PA,3,1..2151,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,HA,4,1..1686,1,16,"[{""name"": ""signal peptide"", ""ranges"": [[1, 16]]}, {""name"": ""HA1"", ""ranges"": [[17, 340]]}, {""name"": ""HA2"", ""ranges"": [[341, 561]]}]", +H10NX,A-Jiangxi-Donghu-346-2013,NP,5,1..1497,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,NA,6,1..1413,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,M1,7,1..759,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,M2,7,1..26;715..982,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,NS1,8,1..654,1,0,[], +H10NX,A-Jiangxi-Donghu-346-2013,NEP,8,1..30;503..838,1,0,[], B-yam,B-Massachusetts-02-2012,HA,4,1..1755,1,15,"[{""name"": ""signal peptide"", ""ranges"": [[1, 15]]}, {""name"": ""HA1"", ""ranges"": [[16, 361]]}, {""name"": ""HA2"", ""ranges"": [[362, 584]]}]", B-yam,B-Massachusetts-02-2012,NA,6,1..1401,1,0,[], B-yam,B-Massachusetts-02-2012,NB,6,3..296,1,0,[], diff --git a/static_data/flu/genes_processed.json b/static_data/flu/genes_processed.json index 3d8ef1e7..b904c3ae 100644 --- a/static_data/flu/genes_processed.json +++ b/static_data/flu/genes_processed.json @@ -6447,14 +6447,14 @@ "row": 9 } ], - "A-Hong-Kong-1073-99": [ + "A-Anhui-1-2013": [ { "name": "PB2", "segment": "1", "segments": [ [ - 28, - 2307 + 1, + 2280 ] ], "protein_coding": true, @@ -6468,8 +6468,8 @@ 760 ], "nt_range": [ - 28, - 2307 + 1, + 2280 ], "aa_ranges": [ [ @@ -6490,34 +6490,34 @@ "segment": 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-17, - 553 + 543 ], "nt_range": [ 1, - 1714 + 1683 ], "aa_ranges": [ [ 1, - 571 + 561 ] ], "nt_ranges": [ [ 1, - 1713 + 1683 ] ], "row": 3 @@ -6650,8 +6650,8 @@ "segment": "5", "segments": [ [ - 40, - 1536 + 1, + 1497 ] ], "protein_coding": true, @@ -6665,8 +6665,8 @@ 499 ], "nt_range": [ - 40, - 1536 + 1, + 1497 ], "aa_ranges": [ [ @@ -6688,33 +6688,33 @@ "segments": [ [ 1, - 1404 + 1398 ] ], "protein_coding": true, "residue_offset": 0, "domains": [], "notes": "", - "len_nt": 1404, - "len_aa": 468, + "len_nt": 1398, + "len_aa": 466, "residue_offset_range": [ 1, - 468 + 466 ], "nt_range": [ 1, - 1404 + 1398 ], "aa_ranges": [ [ 1, - 468 + 466 ] ], "nt_ranges": [ [ 1, - 1404 + 1398 ] ], "row": 5 @@ -6724,8 +6724,8 @@ "segment": "7", "segments": [ [ - 33, - 791 + 1, + 759 ] ], "protein_coding": true, @@ -6739,8 +6739,8 @@ 253 ], "nt_range": [ - 33, - 791 + 1, + 759 ], "aa_ranges": [ [ @@ -6761,12 +6761,12 @@ "segment": "7", "segments": [ [ - 33, - 59 + 1, + 26 ], [ - 748, - 1014 + 715, + 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+ccaccagaggggttcaaattgcttcaaatgagaacatggaaacaatggactccaacactctagaactgagaagtagatat +tgggctataagaaccagaagcggagggaacaccaaccaacagagggcatctgcgggacagattagcgttcaacccacttt +ctcggtacagagaaacctccctttcgaaagagcgaccattatggcagcttttacaggaaatactgagggtagaacgtctg +acatgagaactgaaatcataagaatgatggaaagtgcaaaaccagaagatgtgtcattccaggggcggggagtcttcgag +ctctcggacgaaaaggcaacgaacccgatcgtgccttcctttgacatgagtaatgaagggtcttatttcttcggagacaa +tgcagaggagtatgacaattaaagaaaaatacccttgtttctact \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa new file mode 100644 index 00000000..0fa7d7ee --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa @@ -0,0 +1,20 @@ +>EPI1868392|A/Jiangsu/428/2021|EPI_ISL_2380100|NA|Original|WHO-Chinese-National-Influenza-Center +agcaaaagcaggtgcgaaatgaatccaaatcagaagataataacactcggtgtagtgaacacaactctgtcaacattagc 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+tataaatggaggacttggagtcaagggatttggcttcaaagcgggtaatgatgtatggctgggaaggacagtatctatta +ctggaagatcaggctttgaagtcatcaaggtcacagaaggatggatcaattccctcaatcatactaaatcagttacacag +acactagtaccgaacagcgattggtcaggttactcagggagtttcattgtcgagaacaacggctgtttccagccttgctt +ctatatagaactcatacgaggaaggcccaatagaggcgatgacgtttcctggacaagcaatagtatagttactttctgtg +gactagacaatgaacctggatcgggaaattggcctgatggttccaacattgggttcatgcccaagtaacagaaaaagcac +cttgtttctact \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa new file mode 100644 index 00000000..91982f10 --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa @@ -0,0 +1,14 @@ +>EPI1868391|A/Jiangsu/428/2021|EPI_ISL_2380100|MP|Original|WHO-Chinese-National-Influenza-Center +agcaaaagcaggtagatgtttaaagatgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggcc +ccctcaaagccgagatcgcgcaaagacttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtgg +ataaagacaagaccaatcctgtcacctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcg +aggactgcagcgtagacggtttgtccaaaacgccctaaatgggaatggagacccaaacaacatggacaaggcagttaaat +tgtacaagaaactgaagagggaaatgacatttcatggagcaaaggaagttgcactcagttactcaactggtgcgcttgcc +agctgcatgggtctcatatacaacaggatggggacagtaactgcagaaggggctcttggattggtatgtgccacctgtga +gcagattgccgacgcacaacatcggtcccacagacagatggcaactactaccaatccactaattagacatgagaatagaa +tggtactagccagtactacggctaaggctatggagcagatggctggatcaagtgaacaggcagcggaagccatggaagtc +gcaagccaggctaggcaaatggtgcaggctatgaggacagtcgggactcatcctaactccagtacaggtcttaaggatga +tcttattgaaaatttgcaggcctaccagaaccggatgggagtgcaactgcagcggttcaagtgacccactcgttgttgca +gctaacattattgggatattgcacctgatattgtggattcttgatcgtcttttcttcaaatgcatttatcgtcgctttaa +atacggtttgaaaagagggccttctacggaaggaatgcctgagtctatgagggaagaatatcggcaggaacagcagagtg +ctgtggatgttgacgatggtcattttgtcaacatagagctgaagtaaaaaactaccttgtttctact \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa new file mode 100644 index 00000000..c9f34773 --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa @@ -0,0 +1,13 @@ +>EPI1868390|A/Jiangsu/428/2021|EPI_ISL_2380100|NS|Original|WHO-Chinese-National-Influenza-Center +agcaaaagcagggtgacaaagacataatggattccaacacagtatcaagcttccaggtagactgctttctttggcatgtt +cgcaaacgatttgcagaccaagaaatgggtgatgccccatttctagaccggcttcgccgagatcaaaagtccctgagggg +aagaagcagcactcttggtctagacatcagaactgcaacacgtgaaggaaagcatatagtggagcggattttagaagaag +agtcagatgaagcatttaaaatgagtattgcttcagtaccagctccacgctatctaactgacatgactcttgaagaaatg +tcaagagattggttaatgctcattcccaaacagaaaataacaggggccctatgcattagaatggaccaagcaatagtgga +caaaaccatcaccttgaaagcaaatttcagtgtgattttcaatcggcttgaagccctgatactacttagagcttttacag +aagaaggagcaatagtgggcgaaatctcaccattaccttctcttccaggacatactgacaaggatgtcaaaaatgcaatt +gagatcctcatcggaggatttgaatggaatgataacacagttcgagtctctgaaactctacagagattcgcttggagaag +cagcgatgagaatgggagatctccactctctacaaagtagaaacgggaaatggagagaacagttaagccagaagttcgaa +gagataagatggttgattgaagaagtacgacatagattaaaaattacggagaatagctttgagcaaataacttttatgca +agccttacaactattgcttgaagtggagcaagagataagaactttctcgtttcagcttatttaatgataaaaaacaccct +tgtttctact \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/DESCRIPTION b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/DESCRIPTION new file mode 100644 index 00000000..a68560ce --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/DESCRIPTION @@ -0,0 +1 @@ +A/Jiangsu/428/2021 EPI_ISL_2380100 \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/NOTES b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/NOTES new file mode 100644 index 00000000..e060d6fc --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/NOTES @@ -0,0 +1,10 @@ +Original Passage + +PB2 A/Jiangsu/428/2021 2341 EPI1868397 +PB1 A/Jiangsu/428/2021 2341 EPI1868396 +PA A/Jiangsu/428/2021 2233 EPI1868395 +HA A/Jiangsu/428/2021 1728 EPI1868394 +NP A/Jiangsu/428/2021 1565 EPI1868393 +NA A/Jiangsu/428/2021 1452 EPI1868392 +MP A/Jiangsu/428/2021 1027 EPI1868391 +NS A/Jiangsu/428/2021 890 EPI1868390 \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa new file mode 100644 index 00000000..3f5e2a56 --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa @@ -0,0 +1,30 @@ +>EPI497484|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB2|E1|WHO-Chinese-National-Influenza-Center +atggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcgagatactgacaaaaacaactgtggacca +tatggccataatcaagaaatacacatcgggaagacaggagaagaatcctgcccttaggatgaagtggatgatggcgatga +aatatccaattacagcagacaaaaggataatggagatgatcccagaaaggaatgagcaaggtcagaccctttggagcaag 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+aaggctaatgtgttgatagggcaaggagacgtggtgttggtaatgaaacggaaacgggactctagcatacttactgacag +tcagacagcgaccaaaaggattcggatggccatcaattaa \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa new file mode 100644 index 00000000..b38e6a1b --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa @@ -0,0 +1,30 @@ +>EPI497483|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB1|E1|WHO-Chinese-National-Influenza-Center +atggatgtcaacccgactttacttttcttgaaagtgccagcgcaaaatgccataagtacaacgttcccttatactggaga +ccctccatacagccatggaacaggaacaggatacaccatggacacagtcaacagaacacataaatactcagaaaatggaa +agtggacaacgaacacagagactggagcaccccaactaaatccgattgatggaccattgcctgaggacaacgagccaagt +gggtatgcacaaacggattgcgtattggaagcaatggctttccttgaagaatctcacccagggatctttgaaaactcgtg +tctcgaaactatggaaattgttcagcaaacaagagtggataaactgacccaaggccgccagacctatgactggacgttga 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a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa new file mode 100644 index 00000000..a5686ee6 --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa @@ -0,0 +1,28 @@ +>EPI497482|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PA|E1|WHO-Chinese-National-Influenza-Center +atggaagactttgtgcgacaatgcttcaatccaatgatcgtcgagcttgcggaaaaggcaatgaaagaatatggggaaga +tccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgcttcatgtattctgatttccacttca +ttgacgaacggggcgaatcaactattatagaatctggcgatccaaatgcgttgttgaaacatcgatttgaaataatcgaa +gggagagaccgaacaatggcctggacagtggtgaatagtatctgcaacaccacgggagtcgaaaaacccaaattcctccc +ggatctgtatgactacaaggaaaaccgattcattgaaattggagtgacgaggagggaagtccacatatattacctagaga +aagccaataaaataaaatccgagaagacacacatacacattttctcattcactggagaagagatggccaccaaagcagat +tacactcttgacgaagaaagcagggcaagaatcaaaaccaggctgttcaccataaggcaggaaatggccagcaggggtct 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00000000..bfe19e10 --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/7.fa @@ -0,0 +1,14 @@ +>EPI497478|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|MP|E1|WHO-Chinese-National-Influenza-Center +atgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggccccctcaaagccgagatcgcgcagag +acttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtggataaagacaagaccaatcttgtcac +ctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgttttgtc +caaaacgccctaaatgggaatggagacccaaacaacatggacaaggcagttaaattgtacaagaaactgaagagagaaat +gacatttcatggagcaaaggaagttgcactcagttactcaactggtgcgcttgccagctgcatgggtctcatatacaaca +ggatggggacagtaaccgcagaaggggctcttggactagtatgtgccacttgtgagcagattgctgacgcacaacatcgg +tcccacaggcagatggcgactactaccaacccactaattaggcacgagaatagaatggtactagccagcactacggctaa +ggctatggagcagatggctggatcaagtgagcaggcagcggaagccatggaagtcgcaagtcaggctaggcaaatggtgc +aggctatgagaacagtcgggactcaccctaactccagtacaggtctaaaggatgatcttattgaaaatttgcaggcttac +caaaaccggatgggagtgcaactgcagcggttcaagtgatcctctcgttgttgcagctaacattattgggatattgcact +tgatattgtggattcttgatcgtcttttcttcaaatgcatttatcgtcgctttaaatacggtttgaaaagagggccttct +acggaaggaatgcctgagtctatgagggaagaatatcggcaggaacagcagaatgctgtggatgttgacgatggtcattt +tgtcaacatagagctgaagtaa \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa new file mode 100644 index 00000000..9a7f2bf3 --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa @@ -0,0 +1,12 @@ +>EPI497481|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NS|E1|WHO-Chinese-National-Influenza-Center +atggattccaacactgtgtcaagcttccaggtagactgctttctttggcatgtccgcaaacggtttgcagaccaagaact +gggtgatgccccatttctagaccggcttcgccgagatcagaagtccctgagaggaagaagcagcactcttggtctggaca +tcagaacagcaactcgtgaaggaaagcatatagtggagcgaattctggaggaagagtcagacgaagcatttaaaatgact +attgcttcagtgccagctccacgctatctaactgacatgactcttgaagaaatgtcaagagattggttaatgctcatacc +caaacagaaagtgacagggtccctttgcattagaatggaccaagcaatagtggacaaaaacatcacattgaaagcaaatt +tcagtgtgattttcaatcgattggaagccctaatactacttagagcttttacggatgaaggagcaatagtgggcgaaatc +tcaccattaccttctcttccaggacatactgacaaggatgtcaaaaatgcaattgaggtcctcatcggaggatttgaatg +gaatgataacacagttcgagtctctgaaactctacagagattcgcttggagaagcggcgatgaggatgggagacctccac +tctctccaaagtaggaacgggaaatggagagaacaattaagccagaagttcgaagaaataagatggttgattgaagaagt +acgacataggttaaagattacagagaatagctttgaacaaataacttttatgcaagccttacaactattgcttgaagtgg +agcaagagataagaactttctcgtttcagcttatttaa \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/DESCRIPTION b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/DESCRIPTION new file mode 100644 index 00000000..1af1ea5e --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/DESCRIPTION @@ -0,0 +1 @@ +A/Jiangxi-Donghu/346/2013 EPI_ISL_152846 \ No newline at end of file diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/NOTES b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/NOTES new file mode 100644 index 00000000..a20ebd91 --- /dev/null +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/NOTES @@ -0,0 +1,10 @@ +Passage E1 + +PB2 A/Jiangxi-Donghu/346/2013 2280 EPI497484 +PB1 A/Jiangxi-Donghu/346/2013 2274 EPI497483 +PA A/Jiangxi-Donghu/346/2013 2151 EPI497482 +HA A/Jiangxi-Donghu/346/2013 1686 EPI497477 +NP A/Jiangxi-Donghu/346/2013 1497 EPI497480 +NA A/Jiangxi-Donghu/346/2013 1413 EPI497479 +MP A/Jiangxi-Donghu/346/2013 982 EPI497478 +NS A/Jiangxi-Donghu/346/2013 838 EPI497481 \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa new file mode 100644 index 00000000..833ac2a8 --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa @@ -0,0 +1,30 @@ +>EPI439504|A/Anhui/1/2013|EPI_ISL_138739|PB2|E1|WHO-Chinese-National-Influenza-Center +atggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcgagatactgacaaaaacaactgtggacca +tatggccataatcaagaaatatacatcaggaagacaggagaagaatcctgcccttaggatgaagtggatgatggcaatga +aatatccaattacggcagacaaaaggataatggagatgatcccggaaagaaatgagcaaggtcagaccctttggagcaag +acaaatgatgctggatcagacagagtgatggtgtcacctctggctgtgacgtggtggaacagaaatggaccaacgacaag +cacagtccattatccaaaggtctataaaacctattttgaaaaggtcgaaaggctaaaacatggaaccttcggccccgttc +acttcagaaaccaggttaaaatacgccgcagggtcgacataaacccgggccatgcagatcttagtgctaaagaagcacag +gatgtcatcatggaggtcgtattcccaaacgaagttggagccagaatattgacatcagagtcacagttaacgattaccaa +ggaaaagaagaaggagcttcaggactgcaaaattgcccctttaatggtggcttacatgttggagagagaactggttcgca +aaacaagattcctaccagtagctggagggacaagcagcgtgtatatcgaggtgttgcatttgacccaagggacctgctgg +gagcaaatgtacacaccgggaggggaagtgagaaatgatgatgttgatcagagtttaattattgctgctagaaatattgt +tagaagagcaacagtatcagcagacccgttggcttcgcttttggagatgtgccatagtacacagattggcggggttagga +tggttgacatccttagacaaaacccaacagaagaacaggctgtggatatatgtaaggcagcaatgggtctaaggatcagt +tcatccttcagctttggaggtttcactttcaaaaggacaagtgggtcatctgtcaaaagggaagaagaagtgctcacagg +caacctccaaacattgaaaataagagtacatgaaggatatgaggaattcacaatggtcgggcgaagagcaacagccattc +taaggaaagcaaccagaagactgatccaactgatagtgagtgggaaagacgagcaatcaatcgccgaggcaatcatagtg +gcaatggtattctcacaagaggattgtatgataaaggcagtgagaggtgatttgaactttgtcaacagagcaaaccagcg +gctaaatcccatgcatcaactcctgaggcatttccaaaaggatgcaaaggtcctgtttcaaaactggggaattgaaccca +ttgacaatgtaatggggatgatcggaatattgcctgacatgacccccagcacagagatgtcattgagaggagtgagagtt +agtaaaatgggagtagatgaatattccagcactgagagagtggtcgtgagtattgatcgtttcttgagggtccgagacca +gaggggaaacgtactcctgtctcctgaagaggttagtgaaacacagggaacagaaaagctgactataacatattcatcgt +ccatgatgtgggagatcaatggtccggaatcagtgctagttaacacatatcaatggatcattagaaattgggaaaatgta +aagattcaatggtcccaagatcctacaatgctatacaataagatggaatttgaaccctttcaatccctagtgcctaaagc +tgccagaggccaatatagtgggttcgtgagggttctattccaacagatgcgtgacgtactgggaacatttgacactgtcc +aaataataaagctattaccatttgcagcagccccgccgaagcagagtaggatgcagttctcttctctaactgtgaatgtg +aggggttccggaatgagaatagttgtgagaggcaattctcctgtgttcaactacaacaaggcaaccaagaggcttacggt +gcttggaaaggatgcaggtgcattgatggaagaccccgatgagggaacagcaggagtggaatctgcggtattgaggggat +ttctgattctgggcaaagaagacaaaagatatgggccagcattgagcatcaacgaattgagcaatcttgcgaaaggagag +aaggctaatgtgttgatagggcaaggagacgttgtgttggtgatgaaacggaaacgggactctagcatacttactgacag +tcagacagcgaccaaaaggattcggatggccatcaattaa \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa new file mode 100644 index 00000000..a1ad9d34 --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa @@ -0,0 +1,30 @@ +>EPI439508|A/Anhui/1/2013|EPI_ISL_138739|PB1|E1|WHO-Chinese-National-Influenza-Center +atggatgtcaatccgactttacttttcttgaaagtgccagtgcaaaatgctataagtaccactttcccttatactggaga 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+tcctaagaggaatcgctccattctcaacaccagccaaagggggattcttgaggacgaacagatgtaccagaagtgctgca +acctattcgaaaagttcttccccagcagttcgtacaggaggccagttggaatttccagcatggtggaggccatggtgtct +agggcccgaattgatgcacgaattgacttcgaatctggaaggattaagaaagaagagtttgctgagatcatgaagatctg +ttccaccattgaagagctcagacggcaaaaatag \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa new file mode 100644 index 00000000..37931b9a --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa @@ -0,0 +1,28 @@ +>EPI439503|A/Anhui/1/2013|EPI_ISL_138739|PA|E1|WHO-Chinese-National-Influenza-Center +atggaagactttgtgcgacagtgcttcaatccaatgatcgtcgagcttgcggaaaaggcaatgaaagaatatggggaaga +tccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgcttcatgtactctgatttccacttca +tcgacgaacgaggagaatcaactataatagaatctggcgatccaaatgcgctgctgaaacaccgatttgaaataatcgaa +gggagagaccgaacaatggcctggacagtggtgaatagtatctgcaacaccacaggagccgaaaaacccaaatttctccc +ggatctgtatgactacaaggaaaaccgtttcattgaaattggagtgacgaggagggaagtccacatatattacctagaga +aagccaataaaataaaatccgagaagacacacatccatattttttcattcactggagaagagatggccaccaaagcagat +tacactcttgacgaagaaagcagggcaagaatcaaaaccaggctgttcaccataaggcaggaaatggccagcaggggtct +atgggattcctttcgtcagtctgaaagaggcgaagaaacaattgaagaaagatttgaaatcacaggaaccatgcgcaggc +ttgccgaccaaagtctcccaccgaacttctccagccttgaaaactttagagcctatgtggatggattcgaaccgaacggc +tgcattgagggcaagctttctcagatgtcaaaagaagtgaacgccagaattgagccatttctaagaacaacaccacgccc +tctcagattgcctaatgggcctccctgctctcagcggtcgaaattcttgctgatggatgctctgaaattaagcattgagg +acccgagccacgaaggggaggggataccgctatatgatgcgatcaaatgcatgaaaacgttcttcgggtggaaagagccc +aacattatcaaaccacatgagaaaggcataaaccccaattatctcctgacttggaagcaggtgctagcagaacttcagga +cattgaaaatgaagagaagattccaaggacaaagaacatgaagaaaacaagccaattaaagtgggcactcggtgagaaca +tggcaccggagaaggtggactttgaggattgcaaagatgtcaacgacttgaaacagtacaacagtgatgagccagagccc +agatcactagcatgttggatccagaatgaattcaacaaggcgtgtgaactgactgactcaagctgggtagaacttgatga +aataggggaagatgttgccccaatcgaacacattgcaagcatgagacggaactattttacagcagaggtgtcccactgca +gggctactgaatatataatgaagggagtgtacataaatacagctttgctcaatgcatcttgtgcagccatggatgacttt +caactgattccaatgataagtaaatgtagaaccaaagaaggaagacggaaaacaaacctgtatggattcattataaaagg +aagatctcatttgaggaatgataccgacgtggtaaactttgtaagtatggaattttcccttaccgacccaaggttggaac +cacataaatgggaaaagtattgtgttcttgaaataggggacatgctcctgcgaactgcagtaggccaagtgtcaagaccc +atgtttctgtatgtgagaaccaatgggacctccaagatcaagatgaaatggggtatggaaatgagacgctgccttcttca +atctctccaacagattgagagcatgattgaagctgaatcctccgtcaaagagaaagacctgaccaaagaattctttgaaa +acaaatcagaaacatggccaattggagagtcacctaaaggagtggaggaaggttccatcgggaaggtgtgcagaacctta +ctagcaaaatctgtattcaacagcctatatgcatctccgcaactcgaggggttctcagctgaatcgagaaaactgctact +cattgttcaggcgcttagggataacctggaacctggaacctttgatcttgaagggctatatgaagcaatcgaggagtgcc +tgattaatgatccctgggttttgcttaatgcatcttggttcaactccttcctcacacatgcactaagatag \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa new file mode 100644 index 00000000..65a658b0 --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa @@ -0,0 +1,23 @@ +>EPI439507|A/Anhui/1/2013|EPI_ISL_138739|HA|E1|WHO-Chinese-National-Influenza-Center +atgaacactcaaatcctggtattcgctctgattgcgatcattccaacaaatgcagacaaaatctgcctcggacatcatgc +cgtgtcaaacggaaccaaagtaaacacattaactgaaagaggagtggaagtcgtcaatgcaactgaaacagtggaacgaa +caaacatccccaggatctgctcaaaagggaaaaggacagttgacctcggtcaatgtggactcctggggacaatcactgga +ccacctcaatgtgaccaattcctagaattttcagccgatttaattattgagaggcgagaaggaagtgatgtctgttatcc +tgggaaattcgtgaatgaagaagctctgaggcaaattctcagagaatcaggcggaattgacaaggaagcaatgggattca +catacagtggaataagaactaatggagcaaccagtgcatgtaggagatcaggatcttcattctatgcagaaatgaaatgg +ctcctgtcaaacacagataatgctgcattcccgcagatgactaagtcatataaaaatacaagaaaaagcccagctctaat +agtatgggggatccatcattccgtatcaactgcagagcaaaccaagctatatgggagtggaaacaaactggtgacagttg 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+gtttcatacttctagccattgtaatgggccttgtcttcatatgtgtaaagaatggaaacatgcggtgcactatttgtata +taa \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa new file mode 100644 index 00000000..f450b750 --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa @@ -0,0 +1,20 @@ +>EPI439505|A/Anhui/1/2013|EPI_ISL_138739|NP|E1|WHO-Chinese-National-Influenza-Center +atggcgtctcaaggcaccaaacgatcctatgaacagatggaaactggtggggaacgccagaatgctactgagatcagggc +atctgttggaagaatggttagcggcattgggagattctacatacagatgtgtacagaactcaaactcagtgacaatgaag +ggaggctgattcagaacagtataacaatagagagaatggtactctctgcatttgatgaaagaaggaacagatacctggaa +gagcaccccagtgcaggaaaggaccctaagaaaactggaggtccaatttacaggagaagagacggaaaatgggtgagaga +gctgatcctgtatgacaaagaggaaatcaggagaatttggcgacaagcgaacaatggagaggatgcaactgctggtctta +cccatctgatgatatggcattccaacctgaatgatgctacctatcagagaacgagagctctcgtgcgtactggaatggat +ccccggatgtgctctctgatgcaaggatcaactctcccgaggagatctggagctgcaggtgcagcagtgaaggggatagg +gacaatggtgatggaactgattcggatgataaaacgagggatcaacgaccggaatttctggagaggcgaaaatggaagaa +ggacaagaattgcatatgagagaatgtgcaacatcctcaaagggaaattccaaacagcagcacaaagggcaatgatggat +caagtgcgagagagcagaaatcctgggaatgctgaaatagaagatctcatttttctggcaaggtctgcactcatcctgag +aggatcagtggctcataaatcctgcttgcctgcttgtgtgtacggacttgcagtggctagtggatatgactttgagagag +aagggtactccttggttggaatagatcctttccgtctgcttcaaaacagccaggtctttagtctcattagaccaaatgag +aacccagcacataagagccaactagtgtggatggcatgccactctgcagcgtttgaggaccttagggtctcaagtttcat +tagagggacaagaatggtcccaagaggacagctatccactagaggggttcaaattgcttcaaatgagaacatggaagcaa +tggactccaatactcttgaactgagaagtagatattgggctataagaaccagaagcggagggaacaccaaccaacagagg +gcatctgcaggacaggtcagcgttcaacccactttctcagtacagagaaaccttcctttcgaaagagcaaccattatggc +agcatttacaggaaatactgagggtagaacgtctgacatgaggactgaaatcataagaatgatggaaagtgccagaccag +aagatgtgtcattccaggggcggggagtcttcgagctctcggacgaaaaggcaacgaacccgatcgtgccttcctttgac +atgaataatgaaggatcttatttcttcggagacaatgcagaggagtatgacaattga \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa new file mode 100644 index 00000000..d9359ef8 --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa @@ -0,0 +1,19 @@ +>EPI439509|A/Anhui/1/2013|EPI_ISL_138739|NA|E1|WHO-Chinese-National-Influenza-Center +atgaatccaaatcagaagattctatgcacttcagccactgctatcataataggcgcaatcgcagtactcattggaatagc +aaacctaggattgaacataggactgcatctaaaaccgggctgcaattgctcacactcacaacctgaaacaaccaacacaa +gccaaacaataataaacaactattataatgaaacaaacatcaccaacatccaaatggaagagagaacaagcaggaatttc +aataacttaactaaagggctctgtactataaattcatggcacatatatgggaaagacaatgcagtaagaattggagagag +ctcggatgttttagtcacaagagaaccctatgtttcatgcgacccagatgaatgcaggttctatgctctcagccaaggaa +caacaatcagagggaaacactcaaacggaacaatacacgataggtcccagtatcgcgccctgataagctggccactatca 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a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa new file mode 100644 index 00000000..351add1b --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa @@ -0,0 +1,14 @@ +>EPI439506|A/Anhui/1/2013|EPI_ISL_138739|MP|E1|WHO-Chinese-National-Influenza-Center +atgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggccccctcaaagccgagatcgcacagag +acttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtggataaagacaagaccaatcctgtcac +ctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacggtttgtc +caaaacgccctaaatgggaatggagacccaaacaacatggacaaggcggttaaattatacaagaaactgaagagggaaat +gacatttcatggagcaaaggaagttgcactcagttactcaactggtgcgcttgccagctgcatgggtctcatatacaaca +gaatggggactgtgaccgcagaaggggctcttggactagtatgtgccacttgtgagcagattgctgacgcacaacatcgg +tcccacaggcagatggcgactactactaacccactaattaggcatgagaatagaatggtactagccagcactacggctaa +ggctatggagcagatggctggatcaagtgaacaggcagcggaagccatggaagttgcaagtcaggctaggcaaatggtgc 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+attgcttcagtgccagctccacgctatctaactgacatgactcttgaagaaatgtcaagagattggttaatgctcattcc +caaacagaaaataacagggtccctatgcattagaatggaccaagcaatagtggacaaaaacatcacattgaaagcaaatt +tcagtgtgattttcaatcggcttgaagccctgatactacttagagcttttacggaagaaggagcaattgtaggcgaaatc +tcaccattaccttctcttccaggacatactgacaaggatgtcaaaaatgcaattgagatcctcatcggaggatttgaatg +gaatgataacacagttcgagtctctgaaactctacagagattcgcttggagaagcagcgatgaggatgggagatctccac +tctctacaaagtagaaacgggaaatggagagaacagttaagccagaagttcgaagaaataagatggttgattgaagaagt +acgacatagattaaaaattacggagaatagctttgagcaaataacttttatgcaagccttacaactattgcttgaagtgg +agcaagagataagaactttctcgtttcagcttatttaa \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/DESCRIPTION b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/DESCRIPTION new file mode 100644 index 00000000..c0b612f3 --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/DESCRIPTION @@ -0,0 +1 @@ +A/Anhui/1/2013 EPI_ISL_138739 \ No newline at end of file diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/NOTES b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/NOTES new file mode 100644 index 00000000..e0699fa6 --- /dev/null +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/NOTES @@ -0,0 +1,10 @@ +Passage E1 + +PB2 A/Anhui/1/2013 2280 EPI439504 +PB1 A/Anhui/1/2013 2274 EPI439508 +PA A/Anhui/1/2013 2151 EPI439503 +HA A/Anhui/1/2013 1683 EPI439507 +NP A/Anhui/1/2013 1497 EPI439505 +NA A/Anhui/1/2013 1398 EPI439509 +MP A/Anhui/1/2013 982 EPI439506 +NS A/Anhui/1/2013 838 EPI439510 \ No newline at end of file diff --git a/static_data/flu/proteins.csv b/static_data/flu/proteins.csv index a948b727..fcc37d0e 100644 --- a/static_data/flu/proteins.csv +++ b/static_data/flu/proteins.csv @@ -160,6 +160,18 @@ H7NX,A-Shanghai-02-2013,M1,7,1..759,1,0,[], H7NX,A-Shanghai-02-2013,M2,7,1..26;715..982,1,0,[], H7NX,A-Shanghai-02-2013,NEP,8,1..30;503..838,1,0,[], H7NX,A-Shanghai-02-2013,NS1,8,1..654,1,0,[], 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], "row": 9 diff --git a/static_data/flu/reference.json b/static_data/flu/reference.json index 11bed4f4..78a75cb1 100644 --- a/static_data/flu/reference.json +++ b/static_data/flu/reference.json @@ -218,6 +218,100 @@ }, "description": "B/Wisconsin/01/2010 EPI_ISL_76940 (2012-2013)" }, + "A-Jiangsu-428-2021": { + "name": "A-Jiangsu-428-2021", + "subtype": "H10NX", + "segments": { + "1": { + "name": "EPI1868397|A/Jiangsu/428/2021|EPI_ISL_2380100|PB2|Original|WHO-Chinese-National-Influenza-Center", + "sequence": 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+ "description": "" + }, + "3": { + "name": "EPI1868395|A/Jiangsu/428/2021|EPI_ISL_2380100|PA|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAGTATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTATTCTGATTTCCACTTCATTGACGAACGAGGCGAATCAACTATTATTGAATCTGGCGATCCAAATGTATTGTTGAAACATCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCATGGACAGTGGTGAATAGTATCTGCAACACCACCGGTGTCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACCAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCTAATAAAATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAAATGGCCACCAAAGCAGATTACACTCTTGATGAGGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAGATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAGGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCGAAAGAAGTGAACGCCCGAATCGAGCCATTTCTAAAGACAACACCACGCCCGCTCAGATTGCCTAATGGGCCTCCCTGTTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTAAAGTTAAGCATTGAGGACCCAAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAGGGCATAAACCCCAACTATCTCCTTACTTGGAAGCAGGTGCTGTCAGAACTTCAAGACATTGAAAATGAAGAGAAGATCCCAAGGACAAAAAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTTGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGTAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAAGCATGTGAATTGACTGACTCAAGCTGGGTAGAGCTTGACGAAATAGGGGAAGATGTTGCCCCAATTGAACACATTGCAAGCATGAGAAGGAATTATTTTACAGCAGAGGTATCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGATTTTCAACTGATTCCAATGATAAGTAAATGCAGAACCAAAGAGGGAAGACGTAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCCCATTTGAGGAATGATACCGATGTGGTGAACTTTGTGAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACAAAAATGGGAAAAGTATTGTGTTCTTGAAGTAGGGGATATGCTCCTGCGAACGGCAATAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAAATCAAGATGAAATGGGGTATGGAAATGAGACGTTGCCTTCTCCAGTCTCTCCAACAGATCGAGAGTATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACTAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATTGGAAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCTTATATGCATCTCCGCAACTCGAGGGATTCTCAGCTGAATCAAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGATAGTTGTGGCAATGCTACTATTTGCTATCCATACTGTCCAAAAAAGTACCTTGTTTCTACT", + "description": "" + }, + "4": { + "name": "EPI1868394|A/Jiangsu/428/2021|EPI_ISL_2380100|HA|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGGGTCACAATGTACAAAATAGTAGTGATAATCGCGTTCCTTGGAACTGTGAAGGCTCTTGATAAGATCTGCCTGGGACATCATGCAGTGGCCAATGGGACCATTGTAAAGACTCTCACAAGTGAACAGGAAGAGGTGACAAATGCTACTGAGACAGTGGAGAGCAAAGGCCTAAACAAATTATGTATGAAGGGAAGGAACCATAAAGACCTGGGCAACTGCCATCCAATAGGAATGCTAATAGGAACACCAGCTTGTGACCTGCACCTTACAGGGACATGGGACACTCTCATTGAGCGAGAAAATGCTATTGCTTATTGCTACCCTGGAGCTACTATAAATGAAGAAGCACTGAGGCAGAAAATAATGGAAAGTGGGGGAATCAGCAAAATAAGCACCGGATTTACTTATGGATCTTCCATAAATTCAGCCGGGACCACTAAAGCATGCATGAGAAATGGAGAAAATAGCTTTTATGCAGAGCTTAAGTGGCTAGTATCAAAGAACAAGGGACAAAATTTCCCTCAGACCACGAACACTTACAGAAACACAGACACGGCTGAACATCTCATAATGTGGGGAATTCATCACCCCTCTAGCACTCAAGAGAAGAATGACTTGTATGGGACACAATCACTGTCCATATCAGTCGGAAGTTCCACTTACTACAGCAATTTTGTACCAGTTGTTGGAGCAAGACCCCGGGTCAATGGACAGAGTAGCAKAATCGATTTTCACTGGACATTGGTACAGCCAGGTGATAATATCACCTTCTCACACAATGGGGGCCTGATAGCACCGAGCCGAGTTAGCAAATTAATTGGGAGAGGCTTGGGGATTCAATCTGATGCACCAATAGACAATAATTGTGAATCCAAATGTTTTTGGAGAGAAGGTTCCATAAACACAAGGCTTCCCTTTCAGAATTTGTCACCAAGAACAGTTGGCCAATGTCCTAAATATGTGAACAAAAAGAGCTTGATGCTTGCAACAGGGATGAGAAACGTGCCAGAGATAATACAGGGGAGAGGTCTATTAGGTGCAATAGCGGGGTTTATAGAGAATGGATGGGAAGGAATGGTAGATGGCTGGTATGGTTTCAGACACCAAAATGCTCAGGGCACAGGCCAAGCCGCTGATTACAAGAGTACTCAGGCAGCTATTGACCAAATCACTGGGAAACTGAATAGACTTATTGAAAAGACCAATACTGAGTTCGAGTCAATAGAATCTGAGTTCAGTGAAATTGAACACCAGATCGGTAACGTCATCAATTGGACTAAGGACTCAATAACCGACATTTGGACTTATCAAGCTGAGCTATTGGTAGCAATGGAGAACCAGCACACAATCGATATGGCTGATTCAGAAATGTTGAATCTATATGAAAGAGTGAGAAAACAACTCAGGCAAAATGCAGAAGAAGATGGGAAAGGGTGTTTCGAAATATATCACACTTGTGATGATTCATGCATGGAGAGCATAAGAAACAACACATACGACCATTCACAGTACAGAGAAGAAGCTATTTTAAAAAGACTGAATATCAACCCAGTGACACTCTCTTCTGGCTATAAAGACATCATTCTCTGGTTTAGCTTCGGGGCATCATGTTTTGTTCTTTTAGCCGTTGTCGTGGGTCTTGTCTTCTTTTGTTTGAAAAATGGAAACATGCGATGCACAATCTGTATTTAGTTAAAAACACCCTTGTTTCTACT", + "description": "" + }, + "5": { + "name": "EPI1868393|A/Jiangsu/428/2021|EPI_ISL_2380100|NP|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGGTAGATAATCACTCACTGAGTGACATCAACATCATGGCGTCTCAAGGCACCAAACGATCCTATGAACAGATGGAGACTGGTGGAGAACGCCAGAATGCTACTGAGATCAGGGCATCTGTCGGAAGAATGGTTAGCGGCATTGGGAGATTCTACATACAAATGTGTACAGAACTCAAACTCAGTGACAATGAAGGGAGGCTGATCCAGAACAGTATAACAATAGAGAGAATGGTACTCTCAGCATTTGATGAAAGAAGGAACCGATACCTGGAAGAGCACCCCAGTGCAGGAAAGGACCCGAAGAAAACTGGAGGCCCAATTTACCGAAGAAGAGACGGGAAATGGGTGAGAGAGCTGATCCTGTATGACAAGGAGGAAATCAGGAGAATTTGGCGTCAAGCGAACAATGGAGAAGACGCAACTGCTGGTCTTACCCATCTGATGATATGGCATTCCAATCTAAATGATGCCACATATCAGAGAACGAGAGCTCTCGTACGTACTGGAATGGACCCCAGAATGTGCTCTCTGATGCAAGGATCAACTCTCCCGAGGAGATCTGGAGCTGCGGGCGCAGCAGTAAAGGGGATAGGAACAATGGTGATGGAGCTGATTCGGATGATAAAACGAGGGATAAACGACCGTAATTTCTGGAGAGGCGAAAATGGAAGAAGAACAAGAGTTGCATACGAGAGGATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGAGCAATGATGGATCAAGTGCGAGAGAGCAGAAATCCTGGAAATGCTGAAATAGAAGATCTCATTTTTCTGGCAAGGTCTGCACTCATCCTGAGAGGATCTGTGGCTCATAAGTCCTGCTTGCCTGCTTGTGTATACGGACTTGCAGTGGCCAGTGGATATGACTTTGAGAGAGAAGGATACTCCCTGGTTGGAATAGATCCTTTCCGTCTACTTCAGAACAGCCAGGTTTTTAGTCTTATAAGACCAAATGAGAATCCAGCACATAAGAGTCAACTAGTTTGGATGGCATGCCACTCTGCAGCATTTGAGGACCTTAGAGTCTCAAGCTTCATCAAAGGGACAAGAATGGTCCCAAGAGGACAATTATCCACCAGAGGGGTTCAAATTGCTTCAAATGAGAACATGGAAACAATGGACTCCAACACTCTAGAACTGAGAAGTAGATATTGGGCTATAAGAACCAGAAGCGGAGGGAACACCAACCAACAGAGGGCATCTGCGGGACAGATTAGCGTTCAACCCACTTTCTCGGTACAGAGAAACCTCCCTTTCGAAAGAGCGACCATTATGGCAGCTTTTACAGGAAATACTGAGGGTAGAACGTCTGACATGAGAACTGAAATCATAAGAATGATGGAAAGTGCAAAACCAGAAGATGTGTCATTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGGTCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAATTAAAGAAAAATACCCTTGTTTCTACT", + "description": "" + }, + "6": { + "name": "EPI1868392|A/Jiangsu/428/2021|EPI_ISL_2380100|NA|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGTGCGAAATGAATCCAAATCAGAAGATAATAACACTCGGTGTAGTGAACACAACTCTGTCAACATTAGCCCTCCTCATTGGAATTGGGAATCAGATTTTCAACATTGTTATACATGAGAAAGTAGGAGTACATCAAACTGTGGTATGCCCAACAACAACACCCACAGTGGTACCAAACTGCAGTGAAACCACAATTACATACAACAACACTGTGGTAAACAACATAACAACAACAATAGTAAATAAAGCGGAAAAGCAGTTCAAGTCCTCACTGCCACTGTGTCCCTTCCGAGGCTTCTTCCCCTTCCATAAGGACAATGCAATACGATTGGGTGAAAACAAAGGTGTAATAGTCACAAGGGAGCCCTATGTCAGTTGTGACAATGATGATTGCTGGTCCTTCGCCCTTGCCCAAGGGGCTCTGCTAGGAACTAAACACAGCAATGGAACCATAAAAGATAGAACACCGTATAGATCATTGATTCGATTCCCGATAGGGACAGCTCCAGTGCTGGGTAATTACAAGGAAATATGTGTTGCTTGGTCAAGTAGCAGTTGTTTCGATGGAAAGGAATGGATGCATGTCTGCATGACTGGAAATGACAATGATGCGAGTGGCCAAATAATATATGCAGGAAAGATGACAGACTCCATCAAATCATGGAGAAGAGACATATTAAGAACTCAGGAGTCTGAATGTCAATGCATTGATGGGACCTGTATTGTCGCCATCACAGATGGCCCTGCGGCTAGTAGTGCAGACCACAGAATTTACTGGATAATAGAAGGGAAGATAATAAAGTATGAAAACATTCCCAAAACAAAGATACAACACTTAGAGGAGTGTTCTTGCTATGTGGACACCGATGTGTACTGCATATGTAGGGATAATTGGAAAGGTTCTAACAGGCCCTGGGTGAGGATCAACAATGAGACCATACTAGAAACAGGGTATGTATGCAGCAAATTTCATTCAGACACCCCCAGGCCAGCCGATCCCTCAACAGTGTCATGTGATTCCCCAAGTGATATAAATGGAGGACTTGGAGTCAAGGGATTTGGCTTCAAAGCGGGTAATGATGTATGGCTGGGAAGGACAGTATCTATTACTGGAAGATCAGGCTTTGAAGTCATCAAGGTCACAGAAGGATGGATCAATTCCCTCAATCATACTAAATCAGTTACACAGACACTAGTACCGAACAGCGATTGGTCAGGTTACTCAGGGAGTTTCATTGTCGAGAACAACGGCTGTTTCCAGCCTTGCTTCTATATAGAACTCATACGAGGAAGGCCCAATAGAGGCGATGACGTTTCCTGGACAAGCAATAGTATAGTTACTTTCTGTGGACTAGACAATGAACCTGGATCGGGAAATTGGCCTGATGGTTCCAACATTGGGTTCATGCCCAAGTAACAGAAAAAGCACCTTGTTTCTACT", + "description": "" + }, + "7": { + "name": "EPI1868391|A/Jiangsu/428/2021|EPI_ISL_2380100|MP|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGTAGATGTTTAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATTCCATCAGGCCCCCTCAAAGCCGAGATCGCGCAAAGACTTGAGGATGTTTTTGCAGGGAAGAACGCAGATCTCGAGGCTCTCATGGAGTGGATAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTAGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGGTTTGTCCAAAACGCCCTAAATGGGAATGGAGACCCAAACAACATGGACAAGGCAGTTAAATTGTACAAGAAACTGAAGAGGGAAATGACATTTCATGGAGCAAAGGAAGTTGCACTCAGTTACTCAACTGGTGCGCTTGCCAGCTGCATGGGTCTCATATACAACAGGATGGGGACAGTAACTGCAGAAGGGGCTCTTGGATTGGTATGTGCCACCTGTGAGCAGATTGCCGACGCACAACATCGGTCCCACAGACAGATGGCAACTACTACCAATCCACTAATTAGACATGAGAATAGAATGGTACTAGCCAGTACTACGGCTAAGGCTATGGAGCAGATGGCTGGATCAAGTGAACAGGCAGCGGAAGCCATGGAAGTCGCAAGCCAGGCTAGGCAAATGGTGCAGGCTATGAGGACAGTCGGGACTCATCCTAACTCCAGTACAGGTCTTAAGGATGATCTTATTGAAAATTTGCAGGCCTACCAGAACCGGATGGGAGTGCAACTGCAGCGGTTCAAGTGACCCACTCGTTGTTGCAGCTAACATTATTGGGATATTGCACCTGATATTGTGGATTCTTGATCGTCTTTTCTTCAAATGCATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAATGCCTGAGTCTATGAGGGAAGAATATCGGCAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGAAGTAAAAAACTACCTTGTTTCTACT", + "description": "" + }, + "8": { + "name": "EPI1868390|A/Jiangsu/428/2021|EPI_ISL_2380100|NS|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGGTGACAAAGACATAATGGATTCCAACACAGTATCAAGCTTCCAGGTAGACTGCTTTCTTTGGCATGTTCGCAAACGATTTGCAGACCAAGAAATGGGTGATGCCCCATTTCTAGACCGGCTTCGCCGAGATCAAAAGTCCCTGAGGGGAAGAAGCAGCACTCTTGGTCTAGACATCAGAACTGCAACACGTGAAGGAAAGCATATAGTGGAGCGGATTTTAGAAGAAGAGTCAGATGAAGCATTTAAAATGAGTATTGCTTCAGTACCAGCTCCACGCTATCTAACTGACATGACTCTTGAAGAAATGTCAAGAGATTGGTTAATGCTCATTCCCAAACAGAAAATAACAGGGGCCCTATGCATTAGAATGGACCAAGCAATAGTGGACAAAACCATCACCTTGAAAGCAAATTTCAGTGTGATTTTCAATCGGCTTGAAGCCCTGATACTACTTAGAGCTTTTACAGAAGAAGGAGCAATAGTGGGCGAAATCTCACCATTACCTTCTCTTCCAGGACATACTGACAAGGATGTCAAAAATGCAATTGAGATCCTCATCGGAGGATTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGCGATGAGAATGGGAGATCTCCACTCTCTACAAAGTAGAAACGGGAAATGGAGAGAACAGTTAAGCCAGAAGTTCGAAGAGATAAGATGGTTGATTGAAGAAGTACGACATAGATTAAAAATTACGGAGAATAGCTTTGAGCAAATAACTTTTATGCAAGCCTTACAACTATTGCTTGAAGTGGAGCAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAATGATAAAAAACACCCTTGTTTCTACT", + "description": "" + } + }, + "description": "A/Jiangsu/428/2021 EPI_ISL_2380100" + }, + "A-Jiangxi-Donghu-346-2013": { + "name": "A-Jiangxi-Donghu-346-2013", + "subtype": "H10NX", + "segments": { + "1": { + "name": "EPI497484|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB2|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAAGAATAAAAGAACTAAGAGATTTGATGTCACAGTCTCGCACTCGCGAGATACTGACAAAAACAACTGTGGACCATATGGCCATAATCAAGAAATACACATCGGGAAGACAGGAGAAGAATCCTGCCCTTAGGATGAAGTGGATGATGGCGATGAAATATCCAATTACAGCAGACAAAAGGATAATGGAGATGATCCCAGAAAGGAATGAGCAAGGTCAGACCCTTTGGAGCAAGACAAATGATGCTGGATCAGAAAGAGTGATGGTGTCACCTCTGGCTGTGACGTGGTGGAACAGAAATGGACCAACGACAAGCACAGTCCATTATCCAAAGGTCTATAAAACCTATTTTGAAAAGGTCGAAAGACTAAAACATGGGACCTTCGGCCCCGTTCACTTCCGAAACCAGGTTAAAATACGCCGCAGGGTCGACATAAACCCAGGCCATGCAGATCTTAGTGCTAAGGAAGCACAAGATGTCATCATGGAGGTCGTATTCCCAAATGAAGTTGGAGCCAGAATATTAACATCAGAGTCACAGTTAACGATAACCAAGGAAAAGAAGGAGGAGCTTCAGGGCTGCAAAATTGCCCCTTTAATGGTGGCTTACATGTTGGAGAGGGAACTGGTTCGCAAAACAAGATTTCTACCAGTAGCTGGAGGGACAAGCAGCGTGTATATCGAAGTATTACATTTGACCCAAGGGACCTGCTGGGAGCAAATGTACACACCGGGAGGGGAAGTGAGAAATGATGATGTTGATCAGAGTTTAATTATTGCTGCTAGAAATATTGTTAGAAGAGCAACAGTGTCAGCAGACCCGTTGGCTTCGCTTTTGGAGATGTGCCATAGTACACAGATTGGCGGGGTTAGGATGGTTGACATCCTTAGACAAAACCCAACAGAAGAACAGGCTGTGGATATATGTAAGGCAGCAATGGGCCTAAGGATCAGTTCATCCTTCAGCTTTGGAGGTTTCACTTTCAAAAGGACAAGTGGGTCATCTGTCAAAAAGGAAGAAGAAGTGCTCACAGGCAACCTCCAAACATTGAAAATAAGAGTACATGAAGGATATGAGGAATTCACAATGGTTGGGCGAAGAGCAACAGCCATTCTAAGGAAAGCAACCAGAAGACTGATCCAACTGATAGTGAGTGGGAAAGACGAGCAATCAATTGCCGAGGCAATCATAGTGGCAATGGTATTCTCACAAGAGGATTGTATGGTAAAGGCAGTGAGAGGTGATTTGAACTTTGTCAACAGAGCAAACCAGCGGCTAAATCCAATGCATCAACTCCTGAGGCATTTCCAAAAGGATGCAAAGGTCCTGTTTCAAAACTGGGGAATTGAACCCATTGACAATGTAATGGGGATGATCGGAATATTGCCTGACATGACCCCCAGCACAGAGATGTCATTGAGAGGAGTGAGAGTTAGTAAAATGGGAGTAGATGAATATTCCAGTACTGAGAGAGTGGTCGTGAGTATTGATCGTTTCTTGAGGGTCCGAGACCAGAGGGGAAACGTACTCCTGTCTCCTGAAGAGGTTAGTGAAACACAGGGAACAGAAAAGCTGACTATAACATATTCATCGTCCATGATGTGGGAGATCAATGGTCCGGAATCAGTGCTAGTTAACACATATCAATGGATCATTAGAAATTGGGAAACTGTAAAGATTCAATGGTCCCAAGATCCTACAATGCTATACAATAAGATGGAATTTGAACCCTTTCAATCCCTAGTGCCTAAAGCTGTCAGAGGCCAATATAGTGGGTTCGTAAGGGTTCTATTCCAACAGATGCGTGACGTACTGGGGACATTTGACACTGTCCAAATAATAAAGCTATTACCATTTGCAGCAGCCCCGCCGAAGCAGAGTAGGATGCAGTTCTCTTCTCTAACTGTGAATGTGAGGGGTTCAGGAATGAGAATAGTTGTGAGAGGCAACTCTCCTGTGTTCAACTACAACAAGGCAACCAAGAGGCTTACGGTGCTTGGGAAGGATGCAGGTGCATTGATGGAAGACCCAGATGAGGGAACAGCAGGGGTGGAATCTGCAGTATTGAGGGGATTTCTGATTCTGGGCAAAGAAGACAAGAGATATGGGCCAGCATTGAGCATCAACGAATTGAGCAATCTTGCGAAAGGAGAGAAGGCTAATGTGTTGATAGGGCAAGGAGACGTGGTGTTGGTAATGAAACGGAAACGGGACTCTAGCATACTTACTGACAGTCAGACAGCGACCAAAAGGATTCGGATGGCCATCAATTAA", + "description": "" + }, + "2": { + "name": "EPI497483|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB1|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATGTCAACCCGACTTTACTTTTCTTGAAAGTGCCAGCGCAAAATGCCATAAGTACAACGTTCCCTTATACTGGAGACCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTCAACAGAACACATAAATACTCAGAAAATGGAAAGTGGACAACGAACACAGAGACTGGAGCACCCCAACTAAATCCGATTGATGGACCATTGCCTGAGGACAACGAGCCAAGTGGGTATGCACAAACGGATTGCGTATTGGAAGCAATGGCTTTCCTTGAAGAATCTCACCCAGGGATCTTTGAAAACTCGTGTCTCGAAACTATGGAAATTGTTCAGCAAACAAGAGTGGATAAACTGACCCAAGGCCGCCAGACCTATGACTGGACGTTGAATAGAAATCAGCCGGCTGCTACTGCATTGGCCAATACTATAGAGGTATTCAGATCGAATGGCCTAACCGCCAATGAATCAGGAAGGTTGATCGATTTCCTCAAGGATGTGATGGATTCAATGGATAAGGAAGAAATGGAGATTACAACACATTTCCAGAGGAAGAGGAGAGTGAGGGACAATATGACCAAGAAAATGGTCACACAGAGAACAATAGGGAAGAAAAAACAAAGGCTGAACAAAAGGAGCTACCTAATAAGAGCATTGACATTGAACACAATGACAAAGGATGCTGAAAGAGGCAAGTTGAAAAGGAGGGCAATCGCAACACCCGGGATGCAAATCAGAGGATTCGTGTATTTTGTAGAAGCACTAGCGAGGAGCATCTGTGAGAAACTTGAGCAATCTGGCCTCCCTGTCGGAGGGAATGAGAAAAAGGCTAAACTGGCAAATGTTGTGAGAAAGATGATGGCTAATTCACAAGATACAGAGCTCTCCTTCACAATTACTGGAGACAACACCAAATGGAATGAGAATCAAAACCCCCGGATGTTTCTAGCAATGATAACATACATCACAAGAAACCAGCCAGAGTGGTTTAGAAATGTCTTAAGCATTGCTCCTATAATGTTCTCAAACAAGATGGCGAGATTAGGGAAAGGATACATGTTCGAAAGTAAGAGTATGAAGTTACGGACACAAGTACCAGCGGAAATGCTCGCAAATATTGACCTGAAATATTTCAACAAATCAACAAGAGAGAAAATCGAGAAAATAAGACCTCTACTGATAGATGGCACAGCCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAACATGCTGAGTACAGTCTTGGGAGTTTCAATTCTGAATCTCGGGCAGAAGAAGTACACCAAAACCACATATTGGTGGGATGGACTCCAATCCTCAGATGACTTCGCCCTCATAGTGAATGCACCGAATCATGAGGGAATACAGGCAGGAGTGGATAGGTTCTATAGAACCTGCAAACTAGTTGGGATAAATATGAGCAAGAAGAAATCCTACATAAATCGGACAGGAACATTCGAATTCACAAGCTTTTTCTACCGCTATGGATTTGTAGCTAACTTCAGTATGGAGTTGCCCAGTTTTGGAGTGTCCGGGATAAATGAGTCAGCTGACATGAGCATCGGTGTTACAGTAATAAAGAACAATATGATAAACAACGATCTTGGACCAGCAACAGCTCAGATGGCCCTTCAGCTATTTATCAAAGACTACAGATACACATACCGATGTCACAGGGGTGATACACAAATTCAAACGAGGAGAGCATTCGAGCTGAAGAAGCTGTGGGAGCAGACCCGTTCGAAGGCAGGACTGTTGGTTTCAGATGGAGGGCCAAACCTGTACAATATCCGGAACCTCCACATTCCAGAGGTCTGCTTGAAATGGGAATTGATGGATGAAGACTACCAGGGCAGGCTGTGTAATCCTATGAATCCGTTTGTCAGTCATAAGGAAATTGATTCAGTCAATAGTGCTGTGGTGATGCCAGCTCATGGCCCAGCCAAAAGCATGGAGTATGATGCCGTTGCAACTACACATTCATGGATTCCTAAGAGGAATCGCTCCATTCTCAATACCAGCCAAAGGGGGATCCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACCTATTCGAAAAGTTCTTCCCCAGCAGTTCATACCGGAGGCCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTTTCTAGGGCCCGAATTGATGCACGAATTGACTTCGAATCTGGAAGGATTAAGAAAGAAGAGTTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAATTAG", + "description": "" + }, + "3": { + "name": "EPI497482|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTATTCTGATTTCCACTTCATTGACGAACGGGGCGAATCAACTATTATAGAATCTGGCGATCCAAATGCGTTGTTGAAACATCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGGGAGTCGAAAAACCCAAATTCCTCCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATACACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAAGACAACACCACGCCCGCTCAGATTGCCTAATGGGCCTCCCTGTTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTAAAATTAAGCATTGAAGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAGGGCATAAACCCCAACTATCTCCTGACTTGGAAGCAGGTGCTATCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAGGACAAAAAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGTAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCATGTGAATTGACTGATTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGAAGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCGGCCATGGATGACTTTCAACTGATTCCAATGATAAGTAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGATGTGGTGAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGATATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTCCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATTGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTGTTCAATAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGATAG", + "description": "" + }, + "4": { + "name": "EPI497477|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|HA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGTACAAAATAGTAGTGATAATCGCGCTCCTTGGAGCTGTGAAAGGTCTTGATAAAATCTGTCTAGGACATCATGCAGTGGCTAATGGGACCATCGTAAAGACTCTCACAAACGAACAGGAAGAGGTAACCAACGCTACTGAAACAGTGGAGAGTACAGGCATAAACAGATTATGTATGAAAGGAAGAAAACATAAAGACCTGGGCAACTGCCATCCAATAGGGATGCTAATAGGGACTCCAGCTTGTGATCTGCACCTTACAGGGATGTGGGACACTCTCATTGAACGAGAGAATGCTATTGCTTACTGCTACCCTGGAGCTACTGTAAATGTAGAAGCACTAAGGCAGAAGATAATGGAGAGTGGAGGGATCAACAAGATAAGCACTGGCTTCACTTATGGATCTTCCATAAACTCGGCCGGGACCACTAGAGCGTGCATGAGGAATGGAGGGAATAGCTTTTATGCAGAGCTTAAGTGGCTGGTATCAAAGAGCAAAGGACAAAACTTCCCTCAGACCACGAACACTTACAGAAATACAGACACGGCTGAACACCTCATAATGTGGGGAATTCATCACCCTTCTAGCACTCAAGAGAAGAATGATCTATATGGAACACAATCACTGTCCATATCAGTCGGGAGTTCCACTTACCGGAACAATTTTGTTCCGGTTGTTGGAGCAAGACCTCAGGTCAATGGACAAAGTGGCAGAATTGATTTTCACTGGACACTAGTACAGCCAGGTGACAACATCACCTTCTCACACAATGGGGGCCTGATAGCACCGAGCCGAGTTAGCAAATTAATTGGGAGGGGATTGGGAATCCAATCAGACGCACCAATAGACAATAATTGTGAGTCCAAATGTTTTTGGAGAGGGGGTTCTATAAATACAAGGCTTCCCTTTCAAAATTTGTCACCAAGAACAGTGGGTCAGTGTCCTAAATATGTGAACAGAAGAAGCTTGATGCTTGCAACAGGAATGAGAAACGTACCAGAACTAATACAAGGGAGAGGTCTATTTGGTGCAATAGCAGGGTTTTTAGAGAATGGGTGGGAAGGAATGGTAGATGGCTGGTATGGTTTCAGACATCAAAATGCTCAGGGCACAGGCCAGGCCGCTGATTACAAGAGTACTCAGGCAGCTATTGATCAAATCACTGGGAAACTGAATAGACTTGTTGAAAAAACCAATACTGAGTTCGAGTCAATAGAATCTGAGTTCAGTGAGATCGAACACCAAATCGGTAACGTCATCAATTGGACTAAGGATTCAATAACCGACATTTGGACTTATCAGGCTGAGCTGTTGGTGGCAATGGAGAACCAGCATACAATCGACATGGCTGACTCAGAGATGTTGAATCTATATGAAAGAGTGAGGAAACAACTAAGGCAGAATGCAGAAGAAGATGGGAAAGGATGTTTTGAGATATATCATGCTTGTGATGATTCATGCATGGAGAGCATAAGAAACAACACCTATGACCATTCACAGTACAGAGAGGAAGCTCTTTTGAACAGATTGAATATCAACCCAGTGACACTCTCTTCTGGATATAAAGACATCATTCTCTGGTTTAGCTTCGGGGCATCATGTTTTGTTCTTCTAGCCGTTGTCATGGGTCTTTTCTTTTTCTGTCTGAAGAATGGAAACATGCGATGCACAATCTGTATTTAG", + "description": "" + }, + "5": { + "name": "EPI497480|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGCGTCTCAAGGCACCAAACGATCCTATGAACAGATGGAGACTGGTGGAGAACGCCAGAATGCTACTGAGATCAGGGCATCTGTCGGAAGAATGGTTAGCGGCATTGGGAGATTCTACATACAGATGTGTACAGAACTCAAACTCAGTGACAATGAAGGGAGGCTGATCCAGAACAGTATAACAATAGAGAGAATGGTACTCTCTGCATTTGATGAAAGAAGGAACAGATACCTGGAAGAGCACCCCAGTGCGGGAAAGGACCCGAAGAAAACTGGAGGTCCAATTTACCGAAGAAGAGACGGGAAATGGGTGAGAGAGCTGATCCTGTATGACAAGGAGGAAATCAGGAGAATTTGGCGTCAAGCGAACAATGGAGAAGACGCAACTGCTGGTCTTACCCATCTGATGATATGGCATTCCAACCTGAATGATGCCACATATCAGAGAACGAGAGCTCTCGTGCGTACTGGAATGGACCCCAGGATGTGCTCTCTGATGCAAGGATCAACTCTCCCGAGGAGATCTGGAGCTGCAGGAGCAGCAGTAAAGGGGATAGGGACAATGGTGATGGAGCTGATTCGGATGGTAAAACGAGGGATAAACGACCGGAATTTCTGGAGAGGCGAAAATGGAAGAAGAACAAGAGTTGCATACGAGAGGATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGAGCAATGGTGGATCAAGTGCGAGAGAGCAGAAATCCTGGAAATGCTGAAATAGAAGATCTCATTTTTCTGGCAAGGTCTGCACTCATCCTGAGAGGATCTGTGGCCCATAAGTCCTGCTTGCCTGCTTGTGTGTACGGACTTGCAGTGGCCAGTGGATATGACTTTGAGAGAGAAGGATACTCCCTGGTTGGAATAGACCCTTTCCGTCTGCTTCAAAACAGCCAGGTTTTTAGTCTAATTAGACCAAATGAGAACCCAGCACACAAGAGTCAACTAGTGTGGATGGCATGCCACTCTGCAGCATTTGAGGACCTTAGAGTCTCAAGTTTCATCAGAGGGACAAGAATGGTCCCAAGAGGACAATTATCCACCAGAGGGGTTCAAATTGCTTCAAATGAGAACATGGAAGCAATGGACTCCAACACTCTTGAACTGAGAAGTAGATATTGGGCTATAAGAACCAGGAGCGGAGGGAACACCAACCAACAGAGGGCATCTGCGGGACAGATTAGCGTTCAACCCACTTTCTCGGTACAGAGAAATCTCCCCTTCGAAAGAGCGACCATTATGGCAGCTTTTACAGGAAATACTGAGGGTAGAACGTCTGACATGAGGACTGAAATCATAAGAATGATGGAAAGTGCAAGACCAGAAGATGTGTCATTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAATTAA", + "description": "" + }, + "6": { + "name": "EPI497479|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAATCCAAATCAGAAAATAATAACCATTGGGTCAGTATCCTTAGGATTGGTAATCCTTAATATTCTCCTACACATAGTTAGCATTACAGTAACAGTATTGGTTCTCCCAGGGAATGGAAATAATGAGAGTTGCAATGAAACAGTCATTAGGGAATACAATGAAACAGTAAGGGTTGAGAAGGTAACACAATGGCACAATACCAATGTTATTGAGTATATAGAGAGACCGGAGAATGATCATTTCATGAACAATACAGAAGCATTGTGTGATGCTAAGGGTTTCGCACCCTTTTCCAAAGACAACGGAATAAGAATTGGATCGAGGGGTCATGTTTTTGTCATAAGGGAACCGTTTGTTTCTTGCTCGCCAACAGAGTGCAGGACGTTCTTCCTTACTCAAGGTTCCCTACTCAATGACAAACATTCTAATGGCACAGTTAAAGACCGGAGCCCCTATAGAACTCTAATGAGTGTAGAAATAGGGCAATCACCCAATGTGTACCAGGCAAGGTTTGAGGCAGTAGCGTGGTCAGCTACTGCATGTCATGATGGGAAGAAATGGATGACAATTGGAGTAACGGGCCCTGATGCCAAAGCGGTGGCAGTGGTGCATTATGGGGGAATTCCTACTGATGTAATCAATTCCTGGGCGGGAGATATTTTAAGAACTCAGGAATCATCATGCACTTGCATTCAAGGTGAATGTTTTTGGGTAATGACAGATGGACCAGCAAACAGACAAGCGCAATACAGGGCGTTCAAAGCCAAACAGGGGAAAATAGTTGGGCAAGCTGAAATCAGTTTCAATGGAGGCCATATAGAAGAATGCTCATGCTACCCCAATGAAGGTAAAGTGGAATGTGTTTGTAGGGACAATTGGACCGGAACCAACAGGCCAGTGTTGGTGATTTCTCCAGATTTGTCTTACAGAGTCGGATATTTGTGTGCAGGTCTCCCCAGTGACACCCCAAGAGGAGAAGATAGTCAGTTCACGGGATCATGCACTAGCCCAATGGGAAATCAGGGATACGGAGTTAAGGGATTTGGATTCAGGCAGGGCAATGATGTATGGATGGGAAGGACCATTAGCAGAACATCAAGATCAGGGTTTGAAATCCTGAAAGTCAGAAATGGCTGGGTACAAAACAGTAAAGAGCAGATCAAGAGGCAAGTTGTGGTCGATAACTTGAATTGGTCAGGATACAGTGGTTCTTTCACACTACCAGCGGAGTTAACAAAGAGAAATTGTTTGGTTCCATGTTTTTGGGTTGAGATGATAAGGGGGAATCCGGAAGAAAAGACGATATGGACATCAAGTAGCTCCATTGTGATGTGTGGAGTAGACCATGAGATTGCCGACTGGTCATGGCACGATGGAGCTATTCTTCCTTTTGACATCGATAAGATGTAA", + "description": "" + }, + "7": { + "name": "EPI497478|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|MP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATTCCATCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAGGATGTTTTTGCAGGGAAGAACGCAGATCTCGAGGCTCTCATGGAGTGGATAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGGATTTTAGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGTTTTGTCCAAAACGCCCTAAATGGGAATGGAGACCCAAACAACATGGACAAGGCAGTTAAATTGTACAAGAAACTGAAGAGAGAAATGACATTTCATGGAGCAAAGGAAGTTGCACTCAGTTACTCAACTGGTGCGCTTGCCAGCTGCATGGGTCTCATATACAACAGGATGGGGACAGTAACCGCAGAAGGGGCTCTTGGACTAGTATGTGCCACTTGTGAGCAGATTGCTGACGCACAACATCGGTCCCACAGGCAGATGGCGACTACTACCAACCCACTAATTAGGCACGAGAATAGAATGGTACTAGCCAGCACTACGGCTAAGGCTATGGAGCAGATGGCTGGATCAAGTGAGCAGGCAGCGGAAGCCATGGAAGTCGCAAGTCAGGCTAGGCAAATGGTGCAGGCTATGAGAACAGTCGGGACTCACCCTAACTCCAGTACAGGTCTAAAGGATGATCTTATTGAAAATTTGCAGGCTTACCAAAACCGGATGGGAGTGCAACTGCAGCGGTTCAAGTGATCCTCTCGTTGTTGCAGCTAACATTATTGGGATATTGCACTTGATATTGTGGATTCTTGATCGTCTTTTCTTCAAATGCATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAATGCCTGAGTCTATGAGGGAAGAATATCGGCAGGAACAGCAGAATGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGAAGTAA", + "description": "" + }, + "8": { + "name": "EPI497481|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NS|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATTCCAACACTGTGTCAAGCTTCCAGGTAGACTGCTTTCTTTGGCATGTCCGCAAACGGTTTGCAGACCAAGAACTGGGTGATGCCCCATTTCTAGACCGGCTTCGCCGAGATCAGAAGTCCCTGAGAGGAAGAAGCAGCACTCTTGGTCTGGACATCAGAACAGCAACTCGTGAAGGAAAGCATATAGTGGAGCGAATTCTGGAGGAAGAGTCAGACGAAGCATTTAAAATGACTATTGCTTCAGTGCCAGCTCCACGCTATCTAACTGACATGACTCTTGAAGAAATGTCAAGAGATTGGTTAATGCTCATACCCAAACAGAAAGTGACAGGGTCCCTTTGCATTAGAATGGACCAAGCAATAGTGGACAAAAACATCACATTGAAAGCAAATTTCAGTGTGATTTTCAATCGATTGGAAGCCCTAATACTACTTAGAGCTTTTACGGATGAAGGAGCAATAGTGGGCGAAATCTCACCATTACCTTCTCTTCCAGGACATACTGACAAGGATGTCAAAAATGCAATTGAGGTCCTCATCGGAGGATTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCGGCGATGAGGATGGGAGACCTCCACTCTCTCCAAAGTAGGAACGGGAAATGGAGAGAACAATTAAGCCAGAAGTTCGAAGAAATAAGATGGTTGATTGAAGAAGTACGACATAGGTTAAAGATTACAGAGAATAGCTTTGAACAAATAACTTTTATGCAAGCCTTACAACTATTGCTTGAAGTGGAGCAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAA", + "description": "" + } + }, + "description": "A/Jiangxi-Donghu/346/2013 EPI_ISL_152846" + }, "A-Brisbane-02-2018": { "name": "A-Brisbane-02-2018", "subtype": "H1N1", @@ -859,6 +953,53 @@ }, "description": "AY818135.1 Influenza A virus (A/Viet Nam/1203/2004(H5N1)) hemagglutinin HA gene, complete cds" }, + "A-Anhui-1-2013": { + "name": "A-Anhui-1-2013", + "subtype": "H7NX", + "segments": { + "1": { + "name": "EPI439504|A/Anhui/1/2013|EPI_ISL_138739|PB2|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAAGAATAAAAGAACTAAGAGATTTGATGTCACAGTCTCGCACTCGCGAGATACTGACAAAAACAACTGTGGACCATATGGCCATAATCAAGAAATATACATCAGGAAGACAGGAGAAGAATCCTGCCCTTAGGATGAAGTGGATGATGGCAATGAAATATCCAATTACGGCAGACAAAAGGATAATGGAGATGATCCCGGAAAGAAATGAGCAAGGTCAGACCCTTTGGAGCAAGACAAATGATGCTGGATCAGACAGAGTGATGGTGTCACCTCTGGCTGTGACGTGGTGGAACAGAAATGGACCAACGACAAGCACAGTCCATTATCCAAAGGTCTATAAAACCTATTTTGAAAAGGTCGAAAGGCTAAAACATGGAACCTTCGGCCCCGTTCACTTCAGAAACCAGGTTAAAATACGCCGCAGGGTCGACATAAACCCGGGCCATGCAGATCTTAGTGCTAAAGAAGCACAGGATGTCATCATGGAGGTCGTATTCCCAAACGAAGTTGGAGCCAGAATATTGACATCAGAGTCACAGTTAACGATTACCAAGGAAAAGAAGAAGGAGCTTCAGGACTGCAAAATTGCCCCTTTAATGGTGGCTTACATGTTGGAGAGAGAACTGGTTCGCAAAACAAGATTCCTACCAGTAGCTGGAGGGACAAGCAGCGTGTATATCGAGGTGTTGCATTTGACCCAAGGGACCTGCTGGGAGCAAATGTACACACCGGGAGGGGAAGTGAGAAATGATGATGTTGATCAGAGTTTAATTATTGCTGCTAGAAATATTGTTAGAAGAGCAACAGTATCAGCAGACCCGTTGGCTTCGCTTTTGGAGATGTGCCATAGTACACAGATTGGCGGGGTTAGGATGGTTGACATCCTTAGACAAAACCCAACAGAAGAACAGGCTGTGGATATATGTAAGGCAGCAATGGGTCTAAGGATCAGTTCATCCTTCAGCTTTGGAGGTTTCACTTTCAAAAGGACAAGTGGGTCATCTGTCAAAAGGGAAGAAGAAGTGCTCACAGGCAACCTCCAAACATTGAAAATAAGAGTACATGAAGGATATGAGGAATTCACAATGGTCGGGCGAAGAGCAACAGCCATTCTAAGGAAAGCAACCAGAAGACTGATCCAACTGATAGTGAGTGGGAAAGACGAGCAATCAATCGCCGAGGCAATCATAGTGGCAATGGTATTCTCACAAGAGGATTGTATGATAAAGGCAGTGAGAGGTGATTTGAACTTTGTCAACAGAGCAAACCAGCGGCTAAATCCCATGCATCAACTCCTGAGGCATTTCCAAAAGGATGCAAAGGTCCTGTTTCAAAACTGGGGAATTGAACCCATTGACAATGTAATGGGGATGATCGGAATATTGCCTGACATGACCCCCAGCACAGAGATGTCATTGAGAGGAGTGAGAGTTAGTAAAATGGGAGTAGATGAATATTCCAGCACTGAGAGAGTGGTCGTGAGTATTGATCGTTTCTTGAGGGTCCGAGACCAGAGGGGAAACGTACTCCTGTCTCCTGAAGAGGTTAGTGAAACACAGGGAACAGAAAAGCTGACTATAACATATTCATCGTCCATGATGTGGGAGATCAATGGTCCGGAATCAGTGCTAGTTAACACATATCAATGGATCATTAGAAATTGGGAAAATGTAAAGATTCAATGGTCCCAAGATCCTACAATGCTATACAATAAGATGGAATTTGAACCCTTTCAATCCCTAGTGCCTAAAGCTGCCAGAGGCCAATATAGTGGGTTCGTGAGGGTTCTATTCCAACAGATGCGTGACGTACTGGGAACATTTGACACTGTCCAAATAATAAAGCTATTACCATTTGCAGCAGCCCCGCCGAAGCAGAGTAGGATGCAGTTCTCTTCTCTAACTGTGAATGTGAGGGGTTCCGGAATGAGAATAGTTGTGAGAGGCAATTCTCCTGTGTTCAACTACAACAAGGCAACCAAGAGGCTTACGGTGCTTGGAAAGGATGCAGGTGCATTGATGGAAGACCCCGATGAGGGAACAGCAGGAGTGGAATCTGCGGTATTGAGGGGATTTCTGATTCTGGGCAAAGAAGACAAAAGATATGGGCCAGCATTGAGCATCAACGAATTGAGCAATCTTGCGAAAGGAGAGAAGGCTAATGTGTTGATAGGGCAAGGAGACGTTGTGTTGGTGATGAAACGGAAACGGGACTCTAGCATACTTACTGACAGTCAGACAGCGACCAAAAGGATTCGGATGGCCATCAATTAA", + "description": "" + }, + "2": { + "name": "EPI439508|A/Anhui/1/2013|EPI_ISL_138739|PB1|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATGTCAATCCGACTTTACTTTTCTTGAAAGTGCCAGTGCAAAATGCTATAAGTACCACTTTCCCTTATACTGGAGACCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTCAACAGAACACATAAATACTCAGAAAAAGGAAAGTGGACAACGAACACAGAGACTGGAGCACCCCAACTCAATCCAATTGATGGACCATTACCTGAGGACAACGAGCCGAGTGGGTATGCACAAACGGATTGTGTATTGGAAGCAATGGCTTTCCTTGAAGAATCTCACCCAGGGATCTTTGAAAACTCGTGTCTCGAAACGATGGAAATTGTTCAGCAAACAAGAGTGGATAAACTGACCCAAGGCCGCCAGACCTATGACTGGACGTTGAATAGAAATCAGCCGGCTGCTACCGCATTGGCCAACACTATAGAGGTATTCAGATCGAATGGCCTGACAGCCAATGAATCAGGAAGGTTGATCGATTTCCTCAAGGACGTGATGGATTCAATGGATAAGGAAGAAATGGAGATTACAACACATTTCCAGAGGAAGAGGAGAGTGAGGGACAACATGACCAAGAAAATGGTCACACAGAGAACAATAGGAAAGAAAAAACAAAGACTGAACAAAAGGAGCTACCTAATAAGAGCACTGACATTGAACACAATGACAAAGGATGCTGAAAGAGGCAAGCTGAAAAGGAGGGCAATCGCAACACCCGGGATGCAAATCAGAGGATTCGTGTATTTTGTAGAAGCACTAGCGAGGAGCATCTGTGAGAAACTTGAGCAATCTGGCCTCCCTGTCGGAGGGAATGAGAAGAAAGCTAAATTGGCAAATGTTGTGAGGAAGATGATGACTAATTCACAAGATACAGAGCTCTCCTTCACAATTACTGGGGACAACACCAAATGGAATGAGAATCAAAACCCCCGGATGTTTCTAGCAATGATAACATACATCACAAGAAACCAGCCAGAATGGTTTAGAAATGTCTTAAGCATTGCTCCTATAATGTTCTCAAACAAGATGGCGAGATTAGGAAAAGGGTACATGTTCGAAAGTAAGAGTATGAAGTTACGGACACAAGTACCAGCGGAAATGCTCGCAAATATTGACCTGAAATACTTCAACAAATCAACAAGAGAGAAAATCGAGAAAATAAGACCTCTACTGATAGATGGCACAGCCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAACATGTTGAGTACAGTCTTAGGAGTTTCAATTCTGAATCTCGGGCAGAAGAAGTACACCAAAACCACATATTGGTGGGACGGACTCCAATCCTCAGATGACTTCGCCCTCATAGTGAATGCACCGAATCATGAGGGAATACAGGCAGGAGTAGATAGGTTCTATAGAACCTGCAAATTAGTTGGGATAAACATGAGCAAGAAGAAATCCTACATAAATCGGACAGGAACATTCGAATTCACAAGCTTTTTCTACCGCTATGGATTCGTAGCTAACTTCAGTATGGAGTTGCCCAGTTTTGGAGTGTCCGGGATTAATGAGTCAGCTGACATGAGCGTTGGTGTTACAGTAATAAAGAACAATATGATAAACAACGATCTTGGACCAGCAACAGCTCAAATGGCCCTTCAGCTATTTATCAAAGACTACAGATACACATACCGATGTCACAGGGGTGATACGCAAATTCAAACGAGGAGAGCATTCGAGCTGAAGAAGCTGTGGGAGCAGACCCGTTCGAAGGCAGGACTGTTGGTTTCAGATGGAGGGCCAAACCTGTACAATATCCGGAACCTCCACATTCCAGAGGTCTGCTTGAAATGGGAATTGATGGATGAAGACTACCAAGGCAGGTTGTGTAATCCTATGAACCCGTTTGTCAGTCATAAGGAAATTGATTCAGTCAACAATGCTGTGGTGATGCCAGCTCATGGCCCAGCCAAAAGCATGGAGTATGATGCCGTTGCAACCACACATTCATGGATTCCTAAGAGGAATCGCTCCATTCTCAACACCAGCCAAAGGGGGATTCTTGAGGACGAACAGATGTACCAGAAGTGCTGCAACCTATTCGAAAAGTTCTTCCCCAGCAGTTCGTACAGGAGGCCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGAATTGATGCACGAATTGACTTCGAATCTGGAAGGATTAAGAAAGAAGAGTTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAAATAG", + "description": "" + }, + "3": { + "name": "EPI439503|A/Anhui/1/2013|EPI_ISL_138739|PA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAGACTTTGTGCGACAGTGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGAGGAGAATCAACTATAATAGAATCTGGCGATCCAAATGCGCTGCTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGAGCCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGTTTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCATATTTTTTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCTGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAGATGTCAAAAGAAGTGAACGCCAGAATTGAGCCATTTCTAAGAACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAGGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGCAAAGATGTCAACGACTTGAAACAGTACAACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCGTGTGAACTGACTGACTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATATATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTTCAACTGATTCCAATGATAAGTAAATGTAGAACCAAAGAAGGAAGACGGAAAACAAACCTGTATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAGTCACCTAAAGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTTGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGATAG", + "description": "" + }, + "4": { + "name": "EPI439507|A/Anhui/1/2013|EPI_ISL_138739|HA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAACACTCAAATCCTGGTATTCGCTCTGATTGCGATCATTCCAACAAATGCAGACAAAATCTGCCTCGGACATCATGCCGTGTCAAACGGAACCAAAGTAAACACATTAACTGAAAGAGGAGTGGAAGTCGTCAATGCAACTGAAACAGTGGAACGAACAAACATCCCCAGGATCTGCTCAAAAGGGAAAAGGACAGTTGACCTCGGTCAATGTGGACTCCTGGGGACAATCACTGGACCACCTCAATGTGACCAATTCCTAGAATTTTCAGCCGATTTAATTATTGAGAGGCGAGAAGGAAGTGATGTCTGTTATCCTGGGAAATTCGTGAATGAAGAAGCTCTGAGGCAAATTCTCAGAGAATCAGGCGGAATTGACAAGGAAGCAATGGGATTCACATACAGTGGAATAAGAACTAATGGAGCAACCAGTGCATGTAGGAGATCAGGATCTTCATTCTATGCAGAAATGAAATGGCTCCTGTCAAACACAGATAATGCTGCATTCCCGCAGATGACTAAGTCATATAAAAATACAAGAAAAAGCCCAGCTCTAATAGTATGGGGGATCCATCATTCCGTATCAACTGCAGAGCAAACCAAGCTATATGGGAGTGGAAACAAACTGGTGACAGTTGGGAGTTCTAATTATCAACAATCTTTTGTACCGAGTCCAGGAGCGAGACCACAAGTTAATGGTCTATCTGGAAGAATTGACTTTCATTGGCTAATGCTAAATCCCAATGATACAGTCACTTTCAGTTTCAATGGGGCTTTCATAGCTCCAGACCGTGCAAGCTTCCTGAGAGGAAAATCTATGGGAATCCAGAGTGGAGTACAGGTTGATGCCAATTGTGAAGGGGACTGCTATCATAGTGGAGGGACAATAATAAGTAACTTGCCATTTCAGAACATAGATAGCAGGGCAGTTGGAAAATGTCCGAGATATGTTAAGCAAAGGAGTCTGCTGCTAGCAACAGGGATGAAGAATGTTCCTGAGATTCCAAAGGGAAGAGGCCTATTTGGTGCTATAGCGGGTTTCATTGAAAATGGATGGGAAGGCCTAATTGATGGTTGGTATGGTTTCAGACACCAGAATGCACAGGGAGAGGGAACTGCTGCAGATTACAAAAGCACTCAATCGGCAATTGATCAAATAACAGGAAAATTAAACCGGCTTATAGAAAAAACCAACCAACAATTTGAGTTGATAGACAATGAATTCAATGAGGTAGAGAAGCAAATCGGTAATGTGATAAATTGGACCAGAGATTCTATAACAGAAGTGTGGTCATACAATGCTGAACTCTTGGTAGCAATGGAGAACCAGCATACAATTGATCTGGCTGATTCAGAAATGGACAAACTGTACGAACGAGTGAAAAGACAGCTGAGAGAGAATGCTGAAGAAGATGGCACTGGTTGCTTTGAAATATTTCACAAGTGTGATGATGACTGTATGGCCAGTATTAGAAATAACACCTATGATCACAGCAAATACAGGGAAGAGGCAATGCAAAATAGAATACAGATTGACCCAGTCAAACTAAGCAGCGGCTACAAAGATGTGATACTTTGGTTTAGCTTCGGGGCATCATGTTTCATACTTCTAGCCATTGTAATGGGCCTTGTCTTCATATGTGTAAAGAATGGAAACATGCGGTGCACTATTTGTATATAA", + "description": "" + }, + "5": { + "name": "EPI439505|A/Anhui/1/2013|EPI_ISL_138739|NP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGCGTCTCAAGGCACCAAACGATCCTATGAACAGATGGAAACTGGTGGGGAACGCCAGAATGCTACTGAGATCAGGGCATCTGTTGGAAGAATGGTTAGCGGCATTGGGAGATTCTACATACAGATGTGTACAGAACTCAAACTCAGTGACAATGAAGGGAGGCTGATTCAGAACAGTATAACAATAGAGAGAATGGTACTCTCTGCATTTGATGAAAGAAGGAACAGATACCTGGAAGAGCACCCCAGTGCAGGAAAGGACCCTAAGAAAACTGGAGGTCCAATTTACAGGAGAAGAGACGGAAAATGGGTGAGAGAGCTGATCCTGTATGACAAAGAGGAAATCAGGAGAATTTGGCGACAAGCGAACAATGGAGAGGATGCAACTGCTGGTCTTACCCATCTGATGATATGGCATTCCAACCTGAATGATGCTACCTATCAGAGAACGAGAGCTCTCGTGCGTACTGGAATGGATCCCCGGATGTGCTCTCTGATGCAAGGATCAACTCTCCCGAGGAGATCTGGAGCTGCAGGTGCAGCAGTGAAGGGGATAGGGACAATGGTGATGGAACTGATTCGGATGATAAAACGAGGGATCAACGACCGGAATTTCTGGAGAGGCGAAAATGGAAGAAGGACAAGAATTGCATATGAGAGAATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGGGCAATGATGGATCAAGTGCGAGAGAGCAGAAATCCTGGGAATGCTGAAATAGAAGATCTCATTTTTCTGGCAAGGTCTGCACTCATCCTGAGAGGATCAGTGGCTCATAAATCCTGCTTGCCTGCTTGTGTGTACGGACTTGCAGTGGCTAGTGGATATGACTTTGAGAGAGAAGGGTACTCCTTGGTTGGAATAGATCCTTTCCGTCTGCTTCAAAACAGCCAGGTCTTTAGTCTCATTAGACCAAATGAGAACCCAGCACATAAGAGCCAACTAGTGTGGATGGCATGCCACTCTGCAGCGTTTGAGGACCTTAGGGTCTCAAGTTTCATTAGAGGGACAAGAATGGTCCCAAGAGGACAGCTATCCACTAGAGGGGTTCAAATTGCTTCAAATGAGAACATGGAAGCAATGGACTCCAATACTCTTGAACTGAGAAGTAGATATTGGGCTATAAGAACCAGAAGCGGAGGGAACACCAACCAACAGAGGGCATCTGCAGGACAGGTCAGCGTTCAACCCACTTTCTCAGTACAGAGAAACCTTCCTTTCGAAAGAGCAACCATTATGGCAGCATTTACAGGAAATACTGAGGGTAGAACGTCTGACATGAGGACTGAAATCATAAGAATGATGGAAAGTGCCAGACCAGAAGATGTGTCATTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAATAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAATTGA", + "description": "" + }, + "6": { + "name": "EPI439509|A/Anhui/1/2013|EPI_ISL_138739|NA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAATCCAAATCAGAAGATTCTATGCACTTCAGCCACTGCTATCATAATAGGCGCAATCGCAGTACTCATTGGAATAGCAAACCTAGGATTGAACATAGGACTGCATCTAAAACCGGGCTGCAATTGCTCACACTCACAACCTGAAACAACCAACACAAGCCAAACAATAATAAACAACTATTATAATGAAACAAACATCACCAACATCCAAATGGAAGAGAGAACAAGCAGGAATTTCAATAACTTAACTAAAGGGCTCTGTACTATAAATTCATGGCACATATATGGGAAAGACAATGCAGTAAGAATTGGAGAGAGCTCGGATGTTTTAGTCACAAGAGAACCCTATGTTTCATGCGACCCAGATGAATGCAGGTTCTATGCTCTCAGCCAAGGAACAACAATCAGAGGGAAACACTCAAACGGAACAATACACGATAGGTCCCAGTATCGCGCCCTGATAAGCTGGCCACTATCATCACCGCCCACAGTGTACAACAGCAGGGTGGAATGCATTGGGTGGTCAAGTACTAGTTGCCATGATGGCAAATCCAGGATGTCAATATGTATATCAGGACCAAACAACAATGCATCTGCAGTAGTATGGTACAACAGAAGGCCTGTTGCAGAAATTAACACATGGGCCCGAAACATACTAAGAACACAGGAATCTGAATGTGTATGCCACAACGGCGTATGCCCAGTAGTGTTCACCGATGGGTCTGCCACTGGACCTGCAGACACAAGAATATACTATTTTAAAGAGGGGAAAATATTGAAATGGGAGTCTCTGACTGGAACTGCTAAGCATATTGAAGAATGCTCATGTTACGGGGAACGAACAGGAATTACCTGCACATGCAGGGACAATTGGCAGGGCTCAAATAGACCAGTGATTCAGATAGACCCAGTAGCAATGACACACACTAGTCAATATATATGCAGTCCTGTTCTTACAGACAATCCCCGACCGAATGACCCAAATATAGGTAAGTGTAATGACCCTTATCCAGGTAATAATAACAATGGAGTCAAGGGATTCTCATACCTGGATGGGGCTAACACTTGGCTAGGGAGGACAATAAGCACAGCCTCGAGGTCTGGATACGAGATGTTAAAAGTGCCAAATGCATTGACAGATGATAGATCAAAGCCCATTCAAGGTCAGACAATTGTATTAAACGCTGACTGGAGTGGTTACAGTGGATCTTTCATGGACTATTGGGCTGAAGGGGACTGCTATCGAGCGTGTTTTTATGTGGAGTTGATACGTGGAAGACCCAAGGAAGATAAAGTGTGGTGGACCAGCAATAGTATAGTATCGATGTGTTCCAGTACAGAATTCCTGGGACAATGGAACTGGCCTGATGGGGCTAAAATAGAGTACTTCCTCTAA", + "description": "" + }, + "7": { + "name": "EPI439506|A/Anhui/1/2013|EPI_ISL_138739|MP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATTCCATCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAGGATGTTTTTGCAGGGAAGAACGCAGATCTCGAGGCTCTCATGGAGTGGATAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTAGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGGTTTGTCCAAAACGCCCTAAATGGGAATGGAGACCCAAACAACATGGACAAGGCGGTTAAATTATACAAGAAACTGAAGAGGGAAATGACATTTCATGGAGCAAAGGAAGTTGCACTCAGTTACTCAACTGGTGCGCTTGCCAGCTGCATGGGTCTCATATACAACAGAATGGGGACTGTGACCGCAGAAGGGGCTCTTGGACTAGTATGTGCCACTTGTGAGCAGATTGCTGACGCACAACATCGGTCCCACAGGCAGATGGCGACTACTACTAACCCACTAATTAGGCATGAGAATAGAATGGTACTAGCCAGCACTACGGCTAAGGCTATGGAGCAGATGGCTGGATCAAGTGAACAGGCAGCGGAAGCCATGGAAGTTGCAAGTCAGGCTAGGCAAATGGTGCAGGCTATGAGAACAGTTGGGACTCACCCTAACTCCAGTACAGGTCTAAAAGATGATCTTATTGAAAATTTGCAGGCCTACCAGAACCGGATGGGAGTGCAACTGCAGCGGTTCAAGTGAGCCTCTAGTCGTTGCAGCTAACATTATTGGGATATTGCACTTGATATTGTGGATTCTTGATCGTCTTTTCTTCAAATGCATTTATCGTCGTTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAATGCCTGAGTCTATGAGGGAAGAATATCGGCAGGAACAGCAGAATGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGAAGTAA", + "description": "" + }, + "8": { + "name": "EPI439510|A/Anhui/1/2013|EPI_ISL_138739|NS|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATTCCAATACTGTGTCAAGCTTCCAGGTAGACTGCTTTCTTTGGCATGTCCGCAAACGATTTGCAGACCAAGAAATGGGTGATGCCCCATTTCTAGACCGGCTTCGCCGAGATCAGAAGTCCCTGAGAGGAAGAAGCAGCACTCTTGGTCTGGACATCAGAACTGCCACGCGTGAAGGAAAGCATATAGTGGAGCGGATTTTAGAGGAAGAGTCAGATGAAGCATTTAAAATGAGTATTGCTTCAGTGCCAGCTCCACGCTATCTAACTGACATGACTCTTGAAGAAATGTCAAGAGATTGGTTAATGCTCATTCCCAAACAGAAAATAACAGGGTCCCTATGCATTAGAATGGACCAAGCAATAGTGGACAAAAACATCACATTGAAAGCAAATTTCAGTGTGATTTTCAATCGGCTTGAAGCCCTGATACTACTTAGAGCTTTTACGGAAGAAGGAGCAATTGTAGGCGAAATCTCACCATTACCTTCTCTTCCAGGACATACTGACAAGGATGTCAAAAATGCAATTGAGATCCTCATCGGAGGATTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGCGATGAGGATGGGAGATCTCCACTCTCTACAAAGTAGAAACGGGAAATGGAGAGAACAGTTAAGCCAGAAGTTCGAAGAAATAAGATGGTTGATTGAAGAAGTACGACATAGATTAAAAATTACGGAGAATAGCTTTGAGCAAATAACTTTTATGCAAGCCTTACAACTATTGCTTGAAGTGGAGCAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAA", + "description": "" + } + }, + "description": "A/Anhui/1/2013 EPI_ISL_138739" + }, "A-Shanghai-02-2013": { "name": "A-Shanghai-02-2013", "subtype": "H7NX", diff --git a/static_data/flu/serotype_references/1.fa b/static_data/flu/serotype_references/1.fa index 6cd8f096..bc417ba1 100644 --- a/static_data/flu/serotype_references/1.fa +++ b/static_data/flu/serotype_references/1.fa @@ -20,3 +20,33 @@ AGCAGAAGCAGAGGATTGGAAATGTCTTTTCTATTGACAATAGCAAAGGAATACAAAAGACTATGCCAAGATGCTAAGGC ATGAATATAAATCCTTATTTTCTCTTCATAGATGTACCCATACAGGCAGCAATTTCAACAACATTCCCATACACCGGTGTTCCCCCTTACTCCCATGGAACGGGAACAGGCCACACAATAGACACCGTGATCAGAACACATGAGTACTCGAACAAGGGAAAACAGTACGTTTCTGACGTCACAGGATGTACAATGGTAGATCCAACAAATGGGCCATTACCCGAAGACAATGAGCCGAGTGCCTATGCACAATTAGATTGCGTTCTGGAGGCTTTGGATAGAATGGATGAAGAACATCCAGGTCTGTTTCAAGCAGCCTCACAGAATGCCATGGAGGCACTAATGGTCACAACTGTAGACAAATTAACCCAGGGGAGACAGACTTTTGATTGGACAGTATGCAGAAACCAGCCTGCTGCAACGGCACTAAACACAACAATAACCTCCTTTAGGTTGAATGATTTGAATGGAGCTGACAAGGGTGGATTGGTACCCTTTTGCCAAGATATCATTGATTCATTGGACAAACCTGAAATGACTTTCTTCTCAGTAAAGAATATAAAGAAAAAATTGCCTGCTAAAAACAGAAAGGGTTTCCTCATAAAGAGAATACCAATGAAAGTAAAAGACAGAATAACCAGAGTGGAATACATCAAAAGAGCATTGTCATTAAACACAATGACAAAAGATGCTGAAAGGGGCAAACTAAAAAGAAGAGCGATTGCAACCGCTGGAATACAAATCAGAGGGTTTGTAATAGTAGTTGAAAACTTGGCTAAAAATATCTGTGAAAATCTAGAACAAAGTGGTTTGCCCGTAGGTGGAAACGAAAAGAAGGCCAAACTGTCAAATGCAGTGGCCAAAATGCTCAGTAACTGCCCACCAGGAGGGATCAGCATGACAGTAACAGGAGACAATACTAAATGGAATGAATGCTTAAATCCAAGAATCTTTTTGGCTATGACTGAAAGAATAACCAGAGACAGCCCAATTTGGTTCCGGGATTTTTGTAGTATAGCACCGGTCTTGTTCTCCAATAAAATAGCCAGATTGGGAAAAGGATTTATGATAACAAGCAAAACAAAAAGACTGAAGGCTCAAATACCTTGTCCTGATCTGTTTAGCATACCATTAGAAAGATATAATGAAGAAACAAGGGCAAAATTGAAAAAGCTGAAACCATTCTTCAATGAAGAAGGAACGGCATCTTTGTCGCCTGGGATGATGATGGGAATGTTTAATATGCTATCTACCGTGTTGGGAGTAGCCGCACTAGGTATCAAAAACATTGGAAACAAAGAATACTTATGGGATGGACTGCAATCTTCTGATGATTTTGCTCTGTTTGTTAATGCAAAAGATGAAGAGACATGTATGGAAGGAATAAACGACTTTTACCGAACATGTAAATTATTGGGAATAAACATGAGCAAAAAGAAAAGTTACTGTAATGAAACTGGAATGTTTGAATTTACAAGCATGTTCTATAGAGATGGATTTGTATCTAATTTTGCAATGGAAATTCCTTCATTTGGAGTTGCTGGAGTAAATGAATCAGCAGATATGGCAATAGGAATGACAATAATAAAGAACAATATGATCAACAATGGGATGGGTCCAGCAACAGCACAAACAGCCATACAATTATTCATAGCTGATTATAGGTACACCTACAAATGCCACAGGGGAGATTCCAAAGTGGAAGGAAAAAGAATGAAAATTATAAAGGAGCTATGGGAAAACACTAAAGGAAGAGATGGTCTGTTAGTAGCAGATGGTGGGCCTAACATTTACAATTTGAGAAACTTACATATCCCAGAAATAGTATTGAAGTACAACCTAATGGACCCTGAATACAAAGGGCGATTACTTCATCCTCAAAATCCCTTTGTAGGACATTTGTCTATTGAGGGCATCAAAGAAGCAGATATAACCCCAGCACATGGTCCCGTAAAGAAAATGGATTATGATGCAGTGTCTGGAACTCATAGTTGGAGAACCAAAAGGAACAGATCTATACTAAATACTGATCAGAGGAACATGATTCTTGAGGAACAATGCTACGCTAAGTGTTGCAACCTTTTTGAGGCCTGTTTTAACAGTGCATCATACAGGAAACCAGTAGGTCAGCACAGCATGCTTGAGGCTATGGCCCACAGATTAAGAATGGATGCACGACTAGATTATGAATCAGGAAGAATGTCAAAGGATGATTTTGAGAAAGCAATGGCTCACCTTGGTGAGATTGGGTACATATAA >B-vic_B/Victoria/2/87 ATGCATATAAATCCTTATTTTCTCTTCATAGATGTGCCCATACAGGCAGCAATTTCAACAACATTCCCATACACTGGTGTTCCCCCTTATTCCCATGGAACGGGAACAGGCTACACAATAGACACCGTGATCAGAACACATGAGTACTCAAACAAGGGAAAACAGTACATTTCTGATGTTACAGGATGCACAATGGTAGATCCAACAAATGGGCCATTACCCGAAGACAATGAGCCGAGTGCCTATGCGCAATTAGATTGCGTTCTGGAGGCTTTGGATAGAATGGATGAAGAACATCCAGGTCTGTTTCAAGCAGCCTCACAGAATGCCATGGAGGCACTAATGGTCACAACTGTAGACAAATTAACCCAGGGGAGACAGACTTTTGATTGGACAGTATGCAGAAACCAACCTGCTGCAACGGCACTGAACACAACAATAACCTCTTTTAGGTTGAATGATTTAAATGGAGCCGACAAGGGTGGATTAGTACCCTTTTGCCAGGATATCATTGATTCATTGGACAGACCTGAAATGACTTTCTTCTCAGTAAAGAATATAAAGAAAAAATTGCCTGCTAAAAACAGAAAGGGTTTCCTCATAAAGAGAATACCAATGAAGGTAAAAGACAAAATAACCAGAGTGGAATACATCAAAAGAGCACTATCATTAAACACAATGACAAAAGATGCTGAAAGAGGCAAACTAAAAAGAAGAGCGATTGCCACCGCTGGAATACAAATCAGAGGGTTTGTATTAGTAGTTGAAAACTTGGCTAAAAATATCTGTGAAAATCTAGAACAAAGTGGTTTGCCAGTAGGTGGAAACGAGAAGAAGGCCAAACTGTCAAATGCAGTGGCCAAAATGCACAGTAACTGCCCACCAGGAGGGATCAGCATGACAGTAACAGGAGACAATACTAAATGGAATGAATGTTTAAATCCAAGAATCTTTTTGGCTATGACTGAAAGAATAACCAGAGACAGCCCAATTTGGTTCCGGGATTTTTGTAGTATAGCACCGGTCTTGTTCTCCAACAAGATAGCCAGATTGGGAAAAGGGTTTATGATAACAAGCAAAACAAAAAGACTGAAGGCTCAAATACCTTGTCCTGATCTGTTTAGTATACCATTAGAAAGATATAATGAAGAAACAAGGGCAAAATTGAAAAAGCTAAAACCATTCTTCAATGAAGAAGGAACGGCATCTTTGTCGCCTGGGATGATGATGGGAATGTTTAATATGCTATCTACCGTGTTGGGAGTAGCCGCACTAGGTATCAAAAACATTGGAAACAAAGAATACTTATGGGATGGACTGCAATCTTCTGATGATTTTGCTCTGTTTGTTAATGCAAAGGATGAAGAAACATGTATGGAAGGAATAAACGACTTTTACCGAACATGTAAATTATTGGGAATAAACATGAGCAAAAAGAAAAGTTACTGTAATGAAACTGGAATGTTTGAATTTACAAGCATGTTCTACAGAGATGGATTTGTATCTAATTTTGCAATGGAACTTCCTTCATTTGGGGTTGCTGGAGTAAATGAATCAGCAGATATGGCAATAGGAATGACAATAATAAAGAACAATATGATCAACAATGGGATGGGTCCGGCAACAGCACAAACAGCCATACAATTATTCATAGCTGATTATAGATACACCTACAAATGCCACAGGGGAGATTCCAAAGTAGAAGGAAAGAGAATGAAAATCATAAAGGAGCTATGGGAAAACACTAAAGGAAGAGATGGTCTGTTGGTAGCAGATGGTGGGCCCAACATTTACAATTTGAGAAACTTGCACATCCCAGAAATAGTATTAAAGTACAACCTAATGGACCCTGAATACAAAGGGCGGTTACTTCATCCTCAAAATCCCTTTGTGGGACATTTGTCTATTGAGGGCATCAAAGAGGCAGATATAACCCCAGCACATGGTCCAGTAAAGAAAATGGACTATGATGCGGTGTCTGGAACTCATAGTTGGAGAACCAAAAGAAACAGATCTATACTAAACACTGATCAGAGGAACATGATTCTTGAAGAACAATGCTACGCTAAGTGTTGCAACCTTTTTGAGGCCTGTTTTAACAGTGCATCATACAGGAAGCCAGTGGGTCAACACAGCATGCTTGAGGCTATGGCCCACAGATTAAGAATGGATGCACGATTAGATTATGAATCAGGAAGAATGTCAAAGGATGATTTTGAGAAAGCAATGGCTCACCTTGGTGAGATTGGGTACATATAA +>H10N8_A/Jiangxi-Donghu/346/2013 +atggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcgagatactgacaaaaacaactgtggacca +tatggccataatcaagaaatacacatcgggaagacaggagaagaatcctgcccttaggatgaagtggatgatggcgatga +aatatccaattacagcagacaaaaggataatggagatgatcccagaaaggaatgagcaaggtcagaccctttggagcaag +acaaatgatgctggatcagaaagagtgatggtgtcacctctggctgtgacgtggtggaacagaaatggaccaacgacaag +cacagtccattatccaaaggtctataaaacctattttgaaaaggtcgaaagactaaaacatgggaccttcggccccgttc +acttccgaaaccaggttaaaatacgccgcagggtcgacataaacccaggccatgcagatcttagtgctaaggaagcacaa +gatgtcatcatggaggtcgtattcccaaatgaagttggagccagaatattaacatcagagtcacagttaacgataaccaa +ggaaaagaaggaggagcttcagggctgcaaaattgcccctttaatggtggcttacatgttggagagggaactggttcgca +aaacaagatttctaccagtagctggagggacaagcagcgtgtatatcgaagtattacatttgacccaagggacctgctgg +gagcaaatgtacacaccgggaggggaagtgagaaatgatgatgttgatcagagtttaattattgctgctagaaatattgt +tagaagagcaacagtgtcagcagacccgttggcttcgcttttggagatgtgccatagtacacagattggcggggttagga +tggttgacatccttagacaaaacccaacagaagaacaggctgtggatatatgtaaggcagcaatgggcctaaggatcagt +tcatccttcagctttggaggtttcactttcaaaaggacaagtgggtcatctgtcaaaaaggaagaagaagtgctcacagg +caacctccaaacattgaaaataagagtacatgaaggatatgaggaattcacaatggttgggcgaagagcaacagccattc +taaggaaagcaaccagaagactgatccaactgatagtgagtgggaaagacgagcaatcaattgccgaggcaatcatagtg +gcaatggtattctcacaagaggattgtatggtaaaggcagtgagaggtgatttgaactttgtcaacagagcaaaccagcg +gctaaatccaatgcatcaactcctgaggcatttccaaaaggatgcaaaggtcctgtttcaaaactggggaattgaaccca +ttgacaatgtaatggggatgatcggaatattgcctgacatgacccccagcacagagatgtcattgagaggagtgagagtt +agtaaaatgggagtagatgaatattccagtactgagagagtggtcgtgagtattgatcgtttcttgagggtccgagacca +gaggggaaacgtactcctgtctcctgaagaggttagtgaaacacagggaacagaaaagctgactataacatattcatcgt +ccatgatgtgggagatcaatggtccggaatcagtgctagttaacacatatcaatggatcattagaaattgggaaactgta +aagattcaatggtcccaagatcctacaatgctatacaataagatggaatttgaaccctttcaatccctagtgcctaaagc +tgtcagaggccaatatagtgggttcgtaagggttctattccaacagatgcgtgacgtactggggacatttgacactgtcc +aaataataaagctattaccatttgcagcagccccgccgaagcagagtaggatgcagttctcttctctaactgtgaatgtg +aggggttcaggaatgagaatagttgtgagaggcaactctcctgtgttcaactacaacaaggcaaccaagaggcttacggt +gcttgggaaggatgcaggtgcattgatggaagacccagatgagggaacagcaggggtggaatctgcagtattgaggggat +ttctgattctgggcaaagaagacaagagatatgggccagcattgagcatcaacgaattgagcaatcttgcgaaaggagag +aaggctaatgtgttgatagggcaaggagacgtggtgttggtaatgaaacggaaacgggactctagcatacttactgacag +tcagacagcgaccaaaaggattcggatggccatcaattaa diff --git a/static_data/flu/serotype_references/2.fa b/static_data/flu/serotype_references/2.fa index 9c5ce847..7fe33b3c 100644 --- a/static_data/flu/serotype_references/2.fa +++ b/static_data/flu/serotype_references/2.fa @@ -20,3 +20,33 @@ AGCAGAAGCAGAGGATTATGGAAATCAACCCATATTTGATGTTTCTAAACAACGACGTCACATCGCTGATATCAACAACA ATGACATTGGCTAAAATTGAATTGTTAAAACAACTGTTAAGGGACAATGAAGCCAAAACAGTATTGAAACAAACAACGGTAGACCAATATAACATAATAAGAAAATTCAATACATCAAGAATTGAAAAGAACCCTTCATTAAGGATGAAGTGGGCAATGTGTTCTAATTTTCCCTTGGCTCTGACCAAGGGTGATATGGCAAACAGAATCCCCTTGGAATACAAGGGAATACAACTTAAAACAAATGCTGAAGACATAGGAACCAAAGGCCAAATGTGCTCAATAGCAGCAGTTACCTGGTGGAATACATATGGACCAATAGGAGATACTGAAGGTTTCGAAAAGGTCTACGAAAGCTTTTTTCTCAGAAAGATGAGACTTGACAATGCCACTTGGGGCCGAATAACTTTTGGCCCAGTTGAAAGAGTAAGAAAAAGGGTACTGCTAAACCCTCTCACCAAGGAAATGCCTCCAGATGAAGCAAGTAATGTGATAATGGAAATATTGTTCCCTAAGGAAGCAGGAATACCAAGAGAATCTACTTGGATACATAGGGAACTGATAAAAGAAAAAAGAGAAAAATTGAAAGGAACGATGATAACTCCCATTGTACTGGCATACATGCTTGAGAGAGAATTGGTTGCCAGAAGAAGGTTCCTGCCGGTGGCAGGAGCAACATCAGCTGAGTTCATAGAAATGCTACACTGCTTACAAGGTGAAAATTGGAGACAAATATATCACCCAGGAGGAAATAAACTAACTGAATCTAGGTCTCAATCGACGATTGTAGCTTGTAGAAAGATAATCAGAAGATCAATAGTCGCATCAAACCCATTAGAGCTAGCTGTAGAAATTGCAAACAAGACTGTGATAGATACTGAACCTTTAAAATCATGTCTGACAGCCATAGATGGAGGTGATGTAGCCTGTGACATAATAAGAGCTGCATTAGGACTAAAGATCAGACAAAGACAAAGATTTGGACGACTTGAACTAAAGAGAATATCAGGAAGAGGATTCAAAAATGATGAAGAAATATTAATCGGGAACGGAACAATACAGAAGATTGGAATATGGGACGGAGAAGAGGAGTTCCATGTAAGATGTGGTGAATGCAGGGGAATATTAAAAAAGAGCAAAATGAGAATGGAAAAACTACTAATAAATTCAGCTAAAAAGGAAGACATGAAAGATTTAATAATCTTGTGCATGGTATTTTCTCAAGACACTAGGATGTTCCAAGGAGTGAGAGGAGAAATAAATTTTCTTAATAGAGCAGGCCAACTTTTATCTCCAATGTACCAACTCCAAAGATATTTTTTGAATAGAAGCAACGATCTCTTTGATCAATGGGGGTATGAGGAATCACCCAAAGCAAGTGAGCTACATGGGATAAATGAATTAATGAATGCATCTGACTACACTTTGAAAGGGGTTGTAGTAACAAAAAATGTGATTGATGATTTTAGTTCTACTGAAACAGAAAAAGTATCTATAACAAAAAATCTTAGTTTAATAAAAAGGACTGGGGAAGTCATAATGGGGGCTAATGACGTAAGTGAATTAGAATCACAAGCTCAGCTAATGATAACATATGATACACCTAAGATGTGGGAGATGGGAACAACCAAAGAACTGGTGCAAAACACCTACCAATGGGTGCTGAAAAATTTGGTAACACTGAAGGCTCAGTTTCTTCTAGGAAAAGAAGACATGTTCCAATGGGATGCATTTGAAGCATTTGAAAGCATAATCCCCCAGAAGATGGCTGGCCAGTACAGTGGATTTGCAAGAGCAGTGCTCAAACAAATGAGAGACCAAGAGGTTATGAAAACTGACCAGTTCATAAAGTTGTTGCCCTTTTGTTTCTCACCACCAAAATTAAGGAGCAATGGGGAGCCTTATCAGTTCTTGAGGCTTGTATTGAAGGGAGGAGGAGAAAATTTCATCGAAGTAAGGAAAGGGTCCCCTCTATTCTCTTACAATCCACAAACAGAAGTCCTAACTATATGCGGCAGAATGATGTCATTAAAAGGGAAAATTGAAGATGAAGAAAGGAATAGATCAATGGGGAATGCAGTATTGGCGGGCTTTCTCGTTAGTGGCAAGTATGACCCAGATCTTGGAGATTTCAAAACTATTGAAGAACTTGAAAAGCTAAAACCGGGGGAGAAAGCAAACATCTTACTTTATCAAGGAAAGCCCGTTAAAGTAGTTAAAAGGAAAAGATATAGTGCTTTATCCAATGACATTTCACAAGGAATTAAGAGACAAAGAATGACAGTTGAGTCCATGGGGTGGGCCTTGAGCTAA >B-vic_B/Victoria/2/87 ATGACATTGGCCAAAATTGAATTGTTAAAACAACTGTTAAGGGACAATGAAGCTAAAACGGTTTTGAAGCAAACAACGGTAGACCAATATAACATAATAAGAAAATTCAATACATCAAGAATTGAAAAGAACCCTTCATTAAGGATGAAGTGGGCCATGTGTTCTAATTTTCCCTTGGCTCTAACCAAGGGTGATATGGCAAATAGAATCCCCTTGGAATACAAGGGAATACAACTTAAAACAAATGCTGAAGACATAGGAACCAAAGGCCAAATGTGCTCAATAGCAGCAGTTACTTGGTGGAATACATATGGACCAATAGGAGATACTGAAGGTTTCGAAAGGGTCTACGAAAGCTTTTTTCTCAGAAAAATGAGACTTGACAATGCCACTTGGGGCCGAATAACTTTTGGCCCAGTTGAAAGAGTGAGAAAAAGAGTACTGCTAAACCCTCTCACCAAGGAAATGCCTCCAGATGAGGCGAGCAATGTGATAATGGAAATATTGTTCCCTAAAGAAGCAGGAATACCAAGAGAATCTACTTGGATACATAGGGAACTGATAAAAGAAAAAAGAGAAAAATTGAAAGGAACGATGATAACTCCCATTGTACTGGCATACATGCTTGAGAGAGAACTGGTTGCCCGAAGAAGATTCTTGCCAGTGGCAGGAGCAACATCAGCTGAGTTCATAGAAATGCTACACTGCTTACAAGGTGAAAATTGGAGACAAATATATCACCCAGGAGGGAATAAATTAACTGAGTCTAGGTCTCAATCAATGATAGTAGCTTGTAGAAAAATAATCAGAAGATCAATAGTCGCATCAAACCCACTAGAGCTAGCTGTAGAAATTGCAAACAAGACTGTGATAGATACTGAACCTTTAAAATCATGTCTGGCAGCCATAGACGGAGGTGATGTAGCCTGTGACATAATAAGAGCTGCATTAGGACTAAAGATCAGACAAAGACAAAGATTTGGACGGCTTGAGCTAAAAAGAATATCAGGAAGAGGATTCAAAAATGATGAAGAAATATTGATCGGGAACGGAACAATACAGAAGATTGGAATATGGGACGGAGAAGAGGAGTTCCATGTAAGATGTGGTGAATGCAGGGGAATATTAAAAAAGAGCAAAATGAGACTGGAAAAACTACTAATAAATTCAGCCAAAAAGGAGGATATGAGAGATTTAATAATCTTGTGCATGGTATTTTCTCAAGACACTAGGATGTTCCAAGGAGTGAGAGGAGAAATAAATTTTCTTAATCGAGCAGGCCAACTTTTATCTCCAATGTACCAACTCCAACGATATTTTTTGAATAGGAGCAACGACCTTTTTGATCAATGGGGGTATGAGGAATCACCCAAAGCAAGTGAACTACATGGGATAAATGAATCAATGAATGCATCTGACTATACGTTGAAAGGGGTTGTAGTAACAAAAAATGTGATTGACGACTTTAGCTCTACTGAAACAGAAAAAGTATCCATAACAAAAAATCTTAGTTTAATAAAAAGGACTGGGGAAGTCATAATGGGGGCTAATGACGTAAGTGAATTAGAATCACAAGCACAGCTGATGATAACATATGATACACCTAAGATGTGGGAAATGGGAACAACCAAAGAACTGGTGCAAAACACCTATCAATGGGTGCTAAAAAACTTGGTAACACTGAAGGCTCAGTTTCTTCTAGGAAAAGAGGACATGTTCCAATGGGATGCATTTGAAGCATTTGAGAGCATAATTCCCCAGAAAATGGCTGGCCAGTACAGTGGATTTGCAAGAGCAGTGCTCAAACAAATGAGAGACCAGGAGGTTATGAAAACTGACCAGTTCATAAAGTTGCTGCCTTTCTGTTTCTCACCACCAAAATTAAGGAGCAATGGGGAGCCTTATCAATTCTTGAAGCTTATGTTGAAGGGAGGAGGGGAAAATTTCATCGAAGTAAGGAAAGGGTCCCCTCTATTCTCCTATAATCCACAAACAGAAGTCCTAACTATATGCGGCAGAATGATGTCATTAAAAGGGAAAATTGAAGATGAAGAAAGGAATAGATCAATGGGGAATGCAGTATTGGCAGGCTTTCTCGTTAGTGGCAAGTATGACCCAGATCTTGGAGATTTCAAAACTATTGAAGAACTTGAAAAGCTGAAACCGGGGGAAAAGGCAAACATCTTACTTTATCAAGGAAAGCCAGTTAAAGTAGTTAAAAGGAAAAGATATAGTGCTTTATCCAATGACATTTCACAAGGAATTAAGAGACAAAGAATGACAGTTGAGTCCATGGGGTGGGCCTTGAGCTAA +>H10N8_A/Jiangxi-Donghu/346/2013 +atggatgtcaacccgactttacttttcttgaaagtgccagcgcaaaatgccataagtacaacgttcccttatactggaga +ccctccatacagccatggaacaggaacaggatacaccatggacacagtcaacagaacacataaatactcagaaaatggaa +agtggacaacgaacacagagactggagcaccccaactaaatccgattgatggaccattgcctgaggacaacgagccaagt +gggtatgcacaaacggattgcgtattggaagcaatggctttccttgaagaatctcacccagggatctttgaaaactcgtg +tctcgaaactatggaaattgttcagcaaacaagagtggataaactgacccaaggccgccagacctatgactggacgttga +atagaaatcagccggctgctactgcattggccaatactatagaggtattcagatcgaatggcctaaccgccaatgaatca +ggaaggttgatcgatttcctcaaggatgtgatggattcaatggataaggaagaaatggagattacaacacatttccagag +gaagaggagagtgagggacaatatgaccaagaaaatggtcacacagagaacaatagggaagaaaaaacaaaggctgaaca +aaaggagctacctaataagagcattgacattgaacacaatgacaaaggatgctgaaagaggcaagttgaaaaggagggca +atcgcaacacccgggatgcaaatcagaggattcgtgtattttgtagaagcactagcgaggagcatctgtgagaaacttga +gcaatctggcctccctgtcggagggaatgagaaaaaggctaaactggcaaatgttgtgagaaagatgatggctaattcac +aagatacagagctctccttcacaattactggagacaacaccaaatggaatgagaatcaaaacccccggatgtttctagca +atgataacatacatcacaagaaaccagccagagtggtttagaaatgtcttaagcattgctcctataatgttctcaaacaa +gatggcgagattagggaaaggatacatgttcgaaagtaagagtatgaagttacggacacaagtaccagcggaaatgctcg +caaatattgacctgaaatatttcaacaaatcaacaagagagaaaatcgagaaaataagacctctactgatagatggcaca +gcctcattgagtcctggaatgatgatgggcatgttcaacatgctgagtacagtcttgggagtttcaattctgaatctcgg +gcagaagaagtacaccaaaaccacatattggtgggatggactccaatcctcagatgacttcgccctcatagtgaatgcac +cgaatcatgagggaatacaggcaggagtggataggttctatagaacctgcaaactagttgggataaatatgagcaagaag +aaatcctacataaatcggacaggaacattcgaattcacaagctttttctaccgctatggatttgtagctaacttcagtat +ggagttgcccagttttggagtgtccgggataaatgagtcagctgacatgagcatcggtgttacagtaataaagaacaata +tgataaacaacgatcttggaccagcaacagctcagatggcccttcagctatttatcaaagactacagatacacataccga +tgtcacaggggtgatacacaaattcaaacgaggagagcattcgagctgaagaagctgtgggagcagacccgttcgaaggc +aggactgttggtttcagatggagggccaaacctgtacaatatccggaacctccacattccagaggtctgcttgaaatggg +aattgatggatgaagactaccagggcaggctgtgtaatcctatgaatccgtttgtcagtcataaggaaattgattcagtc +aatagtgctgtggtgatgccagctcatggcccagccaaaagcatggagtatgatgccgttgcaactacacattcatggat +tcctaagaggaatcgctccattctcaataccagccaaagggggatccttgaggatgaacagatgtaccagaagtgctgca +acctattcgaaaagttcttccccagcagttcataccggaggccagttggaatttccagcatggtggaggccatggtttct +agggcccgaattgatgcacgaattgacttcgaatctggaaggattaagaaagaagagtttgctgagatcatgaagatctg +ttccaccattgaagagctcagacggcaaaattag \ No newline at end of file diff --git a/static_data/flu/serotype_references/3.fa b/static_data/flu/serotype_references/3.fa index 0483d833..3620981b 100644 --- a/static_data/flu/serotype_references/3.fa +++ b/static_data/flu/serotype_references/3.fa @@ -20,3 +20,31 @@ AGCAGAAGCAGGGGATCCGAAATGTCAAAAACTTTTGCCGAAATAGCAGAGGCTTTTCTAGAGCCAGAAGCTGTAAGAAT ATGGATACTTTTATTACAAGAAACTTCCAGACTACAATAATACAAAAGGCCAAAAACACAATGGCAGAATTTAGTGAAGATCCTGAATTACAACCAGCAATGCTATTCAACATCTGCGTCCATCTAGAGGTTTGCTATGTAATAAGTGACATGAATTTTCTTGACGAAGAAGGAAAAGCATATACAGCATTAGAAGGACAAGGAAAAGAACAAAACTTGAGACCACAATATGAAGTAATTGAGGGAATGCCAAGAAACATAGCATGGATGGTCCAAAGATCCTTAGCTCAAGAGCATGGAATAGAGACTCCAAAGTATCTGGCTGATTTGTTTGATTATAAAACCAAGAGGTTTATAGAAGTTGGAATAACAAAAGGATTGGCTGATGATTACTTTTGGAAAAAGAAAGAAAAGCTGGGAAATAGCATGGAACTGATGATATTCAGCTACAATCAAGACTATTCGTTAAGTAATGAATCCTCATTGGATGAGGAAGGGAAAGGGAGAGTGCTAAGCAGACTCACAGAACTTCAGGCTGAATTAAGTCTGAAAAACCTATGGCAAGTTCTCATAGGAGAAGAAGATGTTGAAAAGGGAATTGACTTTAAACTTGGACAAACAATATCTAGACTAAGGGATATATCTGTTCCAGCTGGTTTCTCCAATTTTGAAGGAATGAGGAGCTACATAGACAATATAGATCCTAAAGGAGCAATAGAGAGAAATCTAGCAAGGATGTCTCCCTTAGTATCAGCCACACCTAAAAAGTTGAAATGGGAGGACCTAAGACCAATAGGGCCTCACATTTACAACCATGAGCTACCAGAAGTTCCATATAATGCCTTTCTTCTAATGTCTGATGAATTGGGGCTGGCCAATATGACTGAGGGAAAGTCCAAAAAACCGAAGACATTAGCCAAAGAATGTCTAGAAAAGTACTCAACACTACGGGATCAAACTGACCCAATATTAATAATGAAAAGCGAAAAAGCTAACGAAAACTTCCTATGGAAGCTGTGGAGGGACTGTGTAAATACAATAAGTAATGAGGAAATGAGTAACGAGTTACAGAAAACCAATTATGCCAAGTGGGCCACAGGAGATGGATTAACATACCAGAAAATAATGAAAGAAGTAGCAATAGATGACGAAACAATGTGCCAAGAAGAGCCTAAAATCCCTAACAAATGTAGAGTGGCTGCTTGGGTTCAAACAGAGATGAATCTATTGAGCACTCTGACAAGTAAAAGAGCTCTGGACCTACCAGAAATAGGGCCAGACGTAGCACCCGTGGAGCATGTAGGGAGTGAAAGAAGGAAATACTTTGTTAATGAAATCAACTACTGTAAGGCCTCCACAGTTATGATGAAGTATGTGCTTTTTCACACTTCATTGTTGAATGAAAGCAATGCCAGCATGGGAAAATATAAAGTAATACCAATAACCAATAGAGTAGTAAATGAAAAAGGAGAAAGTTTCGACATGCTTTATGGTCTGGCGGTTAAAGGACAATCTCATCTGAGGGGAGATACTGATGTTGTAACAGTTGTGACTTTCGAATTTAGTAGTACAGATCCCAGAGTGGACTCAGGAAAGTGGCCAAAATATACTGTGTTTAGGATTGGCTCCCTATTTGTGAGTGGGAGGGAAAAATCTGTGTACCTATATTGCCGAGTGAATGGCACAAATAAGATCCAAATGAAATGGGGAATGGAAGCTAGAAGATGTCTGCTTCAATCAATGCAACAAATGGAAGCAATTGTTGAACAAGAATCATCGATACAAGGATATGACATGACCAAAGCTTGTTTCAAGGGAGACAGAGTAAATAGCCCCAAAACTTTCAGTATTGGGACTCAAGAAGGAAAACTAGTAAAAGGATCCTTTGGGAAAGCACTAAGAGTAATATTTACCAAATGTTTGATGCACTATGTATTTGGAAATGCCCAATTGGAGGGGTTTAGTGCCGAGTCTAGGAGACTTCTACTGTTAATTCAAGCATTAAAGGACAGAAAGGGCCCTTGGGTGTTCGACTTAGAGGGAATGTATTCTGGAATAGAAGAATGTATTAGTAACAACCCTTGGGTAATACAGAGTGCATACTGGTTCAATGAATGGTTGGGCTTTGAAAAGGAGGGGAGTAAAGTATTAGAATCAGTAGATGAAATAATGGATGAATGAAAAAAAGACATAGTACTCAATTT >B-vic_B/Victoria/2/87 ATGGATACTTTTATTACAAGAAACTTCCAGACTACAATAATACAAAAGGCCAAAAACACAATGGCAGAATTTAGTGAAGATCCTGAATTACAACCAGCAATGCTATTCAACATCTGCGTCCATCTGGAGGTCTGCTATGTAATAAGTGATATGAATTTTCTTGATGAAGAAGGAAAAACATATACAGCATTAGAAGGACAAGGAAAAGAACAAAACTTGAGACCACAATATGAAGTAATTGAGGGAATGCCAAGAAACATAGCATGGATGGTTCAAAGATCCTTAGCCCAAGAGCATGGAATAGAGACTCCAAGATATCTGGCTGATTTGTTCGATTATAAAACCAAAAGGTTTATAGAAGTTGGAATAACAAAAGGATTGGCTGACGATTACTTTTGGAAAAAGAAAGAAAAGCTGGGAAATAGCATGGAACTGATGATATTCAGCTACAATCAAGACTATTCGTTAAGTAATGAATCCTCATTGGATGAGGAAGGGAAAGGGAGAGTGCTAAGCAGACTAACAGAACTTCAGGCTGAATTAAGTTTGAAAAACCTATGGCAAGTTCTCATAGGAGAAGAAGATATTGAAAAAGGAATTGACTTTAAACTTGGACAAACAATATCTAAACTAAGGGATATATCTGTTCCAGCTGGTTTCTCCAATTTTGAAGGAATGAGGAGCTACATTGACAATATAGATCCTAAAGGAGCAATAGAGAGAAATCTAGCAAGGATGTCTCCCTTAGTATCAGTTACTCCTAAAAAGTTGAAATGGGAGGACCTAAGACCAATAGGGCCTCACATTTATAACCATGAGCTACCAGAAGTTCCATATAATGCCTTTCTTCTAATGTCTGATGAATTGGGGCTGGCCAATATGACTGAAGGGAAGTCCAAGAAACCGAAGATCTTAGCCAAAGAATGTCTAGAAAAGTACTCAACACTACGGGATCAAACAGACCCAATATTAATAATGAAAAGCGAAAAAGCTAATGAAAACTTCCTATGGAAGCTGTGGAGGGACTGTGTAAATACAATAAGTAATGAGGAAACAAGTAACGAATTACAAAAAACCAATTATGCCAAGTGGGCCACAGGAGATGGATTAACATACCAGAAAATAATGAAAGAAGTAGCAATAGATGATGAAACAATGTACCAAGAAGAGCCCAAAATACCTAACAAATGTAGAGTGGCTGCTTGGGTTCAAACAGAGATGAATCTATTGAGCACTCTTACAAGTAAAAGGGCCCTGGATCTACCAGAAATAGGGCCAGACGTAGCACCTGTGGAGCATATAGGGAGTGAAAGAAGAAAATACTTTGTTAATGAAATCAATTACTGTAAGGCCTCTACAGTTATGATGAAGTATGTACTTTTTAACACTTCATTACTGAATGAAAGCAATGCCAGTATGGGAAAATATAAAGTAATACCAATAACCAACAGAGTAATAAATGAAAAAGGAGAGAGTTTTGACATGCTTTATGGTCTGGCGGTTAAAGGGCAATCTCATCTGAGGGGAGATACGGATGTTGTAACAGTTGTGACTTTCGAATTTAGTAGTACAGATCCCAGAGTGGACTCAGGAAAGTGGCCAAAATATACTGTATTTAGAATTGGTTCCTTATTTGTGAGCGGGAGGGAAAAATCTGTGTACCTATATTGCCGAGTGAATGGTAGAAATAAGATCCAAATGAAATGGGGAATGGAAGCTAGAAGATGTCTGCTTCAATCAATGCAACAAATGGAAGCAATTGTTGAACAAGAATCATCAATACAAGGATATGACATGACCAAAGCTTGTTTTAAGGGAGACAGAGTGAACAGCCCCAAAACTTTCAGTATTGGAACTCAAGAAGGAAAACTAGTAAAAGGATCCTTTGGGAAAGCACTAAGAGTAATATTTACCAAATGTTTGATGCATTATGTATTTGGAAATGCTCAATTGGAGGGTTTTAGTGCCGAATCTAGGAGACTTCTACTGTTAATTCAAGCATTAAAGGACAGAAAGGGCCCTTGGGTGTTCGACTTGGAGGGAATGTATTCTGGAATAGAGGAATGTATTAGTAACAACCCTTGGGTAATACAGAGTGCATACTGGTTTAATGAATGGTTGGGCTTTGAAAAAGAGGGGAGTAAAGTATTAGAATCAGTAGATGAAATAATGGATGAATGAAAGAAGGACATAGTGCTCAATTT +>H10N8_A/Jiangxi-Donghu/346/2013 +atggaagactttgtgcgacaatgcttcaatccaatgatcgtcgagcttgcggaaaaggcaatgaaagaatatggggaaga +tccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgcttcatgtattctgatttccacttca +ttgacgaacggggcgaatcaactattatagaatctggcgatccaaatgcgttgttgaaacatcgatttgaaataatcgaa +gggagagaccgaacaatggcctggacagtggtgaatagtatctgcaacaccacgggagtcgaaaaacccaaattcctccc +ggatctgtatgactacaaggaaaaccgattcattgaaattggagtgacgaggagggaagtccacatatattacctagaga +aagccaataaaataaaatccgagaagacacacatacacattttctcattcactggagaagagatggccaccaaagcagat +tacactcttgacgaagaaagcagggcaagaatcaaaaccaggctgttcaccataaggcaggaaatggccagcaggggtct +atgggattcctttcgtcagtccgaaagaggcgaagaaacaattgaagaaagatttgaaatcacaggaaccatgcgcaggc +ttgccgaccaaagtctcccaccgaacttctccagccttgaaaactttagagcctatgtggatggattcgaaccgaacggc +tgcattgagggcaagctttctcaaatgtcaaaagaagtgaacgccagaatcgagccatttctaaagacaacaccacgccc +gctcagattgcctaatgggcctccctgttctcagcggtcgaaattcttgctgatggatgctctaaaattaagcattgaag +acccgagccacgaaggggaggggataccgctatatgatgcgatcaaatgcatgaaaacgttcttcgggtggaaagagccc +aacattatcaaaccacatgagaagggcataaaccccaactatctcctgacttggaagcaggtgctatcagaacttcagga +cattgaaaatgaagagaagattccaaggacaaaaaacatgaagaaaacaagccaattaaagtgggcactcggtgagaaca +tggcaccggagaaggtggactttgaggattgtaaagatgtcaacgacctgaaacagtacgacagtgatgagccagagccc +agatcactagcatgttggatccagaatgaattcaacaaggcatgtgaattgactgattcaagctgggtagaacttgatga +aataggggaagatgttgccccaatcgaacacattgcaagcatgagaaggaactattttacagcagaggtgtcccactgca +gggctactgaatacataatgaagggagtgtacataaatacagctttgctcaatgcatcttgtgcggccatggatgacttt +caactgattccaatgataagtaaatgcagaaccaaagaaggaagacggaaaacaaacctatatggattcattataaaagg +aagatctcatttgaggaatgataccgatgtggtgaactttgtaagtatggaattttcccttaccgacccaaggttggaac +cacataaatgggaaaagtattgtgttcttgaaataggggatatgctcctgcgaactgcagtaggccaagtgtcaagaccc +atgtttctgtatgtgagaaccaatgggacctccaagatcaagatgaaatggggtatggaaatgagacgctgccttctcca +atctctccaacagattgagagcatgattgaagctgaatcctccgtcaaagagaaagacctgaccaaagaattctttgaaa +acaaatcagaaacatggccaattggagaatcacctaagggagtggaggaaggttccattgggaaggtgtgcagaacctta +ctagcaaaatctgtgttcaatagcctatatgcatctccgcaactcgaggggttctcagctgaatcgagaaaactgctact +cattgttcaggcgcttagggataacctggaacctggaaccttcgatcttgaggggctatatgaagcaatcgaggagtgcc +tgattaatgatccctgggttttgcttaatgcatcttggttcaactccttcctcacacatgcactaagatag \ No newline at end of file diff --git a/static_data/flu/serotype_references/4.fa b/static_data/flu/serotype_references/4.fa index a5c32199..6268bdf2 100644 --- a/static_data/flu/serotype_references/4.fa +++ b/static_data/flu/serotype_references/4.fa @@ -20,3 +20,26 @@ AGCAGAAGCAGGGGTTTAATAATGTTTTTCTCATTACTCTTGATGTTGGGCCTCACAGAGGCTGAAAAAATAAAGATATG ATGAAGGCAATAATTGTACTACTCATGGTAGTAACATCCAACGCAGATCGAATCTGCACTGGGATAACATCTTCAAACTCACCTCATGTGGTCAAAACAGCTACTCAAGGGGAAGTTAATGTGACTGGTGTGATACCACTGACAACAACACCAACAAAATCTCATTTTGCAAATCTCAAAGGAACAAAGACCAGAGGGAAACTATGCCCAAACTGTCTCAACTGCACAGATCTGGATGTGGCCTTGGCGAGACCAATGTGTATGGGGACCATACCTTCGGCAAAAGCTTCAATACTCCACGAAGTCAGACCTGTTACATCCGGGTGCTTTCCTATAATGCACGACAGAACAAAAATCAGACAGCTACCCAATCTTCTCAGAGGATATGAAAATATCAGATTATCAACCCATAACGTTATCAACGCAGAAAGGGCACCAGGAGGACCCTACAGACTTGGAACCTCAGGATCTTGCCCTAACGTTACCAGTAGAAACGGATTCTTCGCAACAATGGCTTGGGCTGTCCCAAGGGACAACAAAACAGCAACGAATCCACTAACAGTAGAAGTACCATACATTTGCACAAAAGGAGAAGACCAAATTACTGTTTGGGGGTTCCATTCTGATGACAAAACCCAAATGAAAAAACTCTATGGAGACTCAAATCCTCAAAAGTTCACCTCATCTGCCAATGGAGTAACCACACATTATGTTTCTCAGATTGGTGACTTCCCAAATCAAACAGAAGACGGAGGGCTACCACAAAGCGGCAGAATTGTTGTTGATTACATGGTGCAAAAACCTGGGAAAACAGGAACAATAGTCTATCAAAGAGGTGTTTTGTTGCCTCAAAAGGTGTGGTGCGCAAGTGGCAGGAGCAAGGTAATAAAAGGGTCCTTGCCTTTAATTGGTGAAGCAGATTGCCTTCACGCAAAATACGGTGGATTAAACAAAAGCAAGCCTTACTACACAGGAGAACATGCAAAAGCCATAGGAAATTGCCCAATATGGGTGAAAACACCTTTGAAGCTTGCCAATGGAACCAAATATAGACCTCCTGCAAAACTATTAAAGGAAAGG >B-vic_B/Victoria/2/87 ATGAAGGCAATAATTGTACTACTCATGGTAGTAACATCCAATGCAGATCGAATCTGCACTGGGATAACATCGTCAAACTCACCCCATGTGGTCAAAACTGCTACTCAAGGGGAAGTCAATGTGACTGGTGTGATACCACTGACAACAACACCAACCAAATCTCATTTTGCAAATCTCAAAGGAACAAAAACCAGAGGGAAACTATGCCCAAAGTGTCTCAACTGCACAGATCTGGACGTGGCCTTGGCGAGACCAAAGTGCATGGGGACCATACCTTCGGCAAAAGCTTCAATACTCCATGAAGTCAAACCTGTTACATCTGGGTGCTTTCCTATAATGCACGACAGAACAAAAATTAGACAGCTACCCAATCTTCTCAGAGGATACGAACATATCAGGTTATCAACCCATAACGTTATCAACGCAGAAACGGCACCAGGAGGACCCTACAAAGTTGGAACCTCAGGGTCTTGCCCTAACGTTACCAATGGAAACGGATTCTTCGCAACAATGGCTTGGGCTGTCCCAAAAAACGACAACAACAAAACAGCAACAAATCCATTAACAGTAGAAGTACCATACATTTGTACAGAAGGAGAAGACCAAATTACTGTTTGGGGGTTCCACTCTGATAGCGAAACCCAAATGGTAAAACTCTATGGAGACTCAAAGCCTCAGAAGTTCACCTCATCTGCCAATGGAGTAACCACACATTACGTTTCACAGATTGGTGGCTTCCCAAATCAAGCAGAAGACGGAGGGCTACCACAAAGCGGTAGAATTGTTGTTGATTACATGGTGCAAAAATCTGGAAAAACAGGAACAATTACCTACCAAAGAGGTATTTTATTGCCTCAAAAAGTGTGGTGCGCAAGTGGCAGGAGCAAGGTAATAAAAGGGTCCTTGCCTTTAATTGGTGAAGCAGATTGCCTCCACGAAAAATACGGTGGATTAAACAAAAGCAAGCCTTACTACACAGGAGAACATGCAAAAGCCATAGGAAATTGCCCAATATGGGTGAAAACACCCTTGAAGCTGGCCAATGGAACCAAATATAGACCTCCTGCAAAACTATTAAAGGAAAGGGGTTTCTTCGGAGCTATTGCTGGTTTCTTAGAAGGAGGATGGGAAGGAATGATTGCAGGTTGGCACGGATACACATCCCATGGAGCACATGGAGTAGCAGTGGCAGCAGACCTTAAGAGTACGCAAGAAGCCATAAACAAGATAACAAAAAATCTCAATTCTTTGAGTGAGCTGGAAGTAAAGAATCTTCAAAGACTAAGCGGTGCCATGGATGAACTCCACAACGAAATACTCGAACTGGATGAGAAAGTGGATGATCTCAGAGCTGATACAATAAGCTCGCAAATAGAGCTCGCAGTCTTGCTTTCCAACGAAGGAATAATAAACAGTGAAGATGAGCATCTCTTGGCGCTTGAAAGAAAACTGAAGAAAATGCTGGGCCCCTCTGCTGTAGAGATAGGGAATGGATGCTTCGAAACCAAACACAAGTGCAACCAGACCTGCCTAGACAGAATAGCTGCTGGCACCTTTAATGCAGGAGAATTTTCTCTTCCCACCTTTGATTCACTAAATATTACTGCTGCATCTTTAAATGATGATGGATTGGATAATCATACTATACTGCTTTACTACTCAACTGCTGCTTCCAGTTTGGCTGTAACATTGATGATAGCTATCTTTATTGTTTATATGGTCTCCAGAGACAATGTTTCTTGCTCCATCTGTCTATAGGGAGGATTGAGCCCTGTATTTTCCTTTGTTGTGGTGCTTGTTTGCTTGTTACCATTACAGAAAACG +>H10N8_A/Jiangsu/428/2021 +atgtacaaaatagtagtgataatcgcgctccttggagctgtgaaaggtcttgataaaatctgtctaggacatcatgcagt +ggctaatgggaccatcgtaaagactctcacaaacgaacaggaagaggtaaccaacgctactgaaacagtggagagtacag +gcataaacagattatgtatgaaaggaagaaaacataaagacctgggcaactgccatccaatagggatgctaatagggact +ccagcttgtgatctgcaccttacagggatgtgggacactctcattgaacgagagaatgctattgcttactgctaccctgg +agctactgtaaatgtagaagcactaaggcagaagataatggagagtggagggatcaacaagataagcactggcttcactt +atggatcttccataaactcggccgggaccactagagcgtgcatgaggaatggagggaatagcttttatgcagagcttaag +tggctggtatcaaagagcaaaggacaaaacttccctcagaccacgaacacttacagaaatacagacacggctgaacacct +cataatgtggggaattcatcacccttctagcactcaagagaagaatgatctatatggaacacaatcactgtccatatcag +tcgggagttccacttaccggaacaattttgttccggttgttggagcaagacctcaggtcaatggacaaagtggcagaatt +gattttcactggacactagtacagccaggtgacaacatcaccttctcacacaatgggggcctgatagcaccgagccgagt +tagcaaattaattgggaggggattgggaatccaatcagacgcaccaatagacaataattgtgagtccaaatgtttttgga +gagggggttctataaatacaaggcttccctttcaaaatttgtcaccaagaacagtgggtcagtgtcctaaatatgtgaac +agaagaagcttgatgcttgcaacaggaatgagaaacgtaccagaactaatacaagggagaggtctatttggtgcaatagc +agggtttttagagaatgggtgggaaggaatggtagatggctggtatggtttcagacatcaaaatgctcagggcacaggcc +aggccgctgattacaagagtactcaggcagctattgatcaaatcactgggaaactgaatagacttgttgaaaaaaccaat +actgagttcgagtcaatagaatctgagttcagtgagatcgaacaccaaatcggtaacgtcatcaattggactaaggattc +aataaccgacatttggacttatcaggctgagctgttggtggcaatggagaaccagcatacaatcgacatggctgactcag +agatgttgaatctatatgaaagagtgaggaaacaactaaggcagaatgcagaagaagatgggaaaggatgttttgagata +tatcatgcttgtgatgattcatgcatggagagcataagaaacaacacctatgaccattcacagtacagagaggaagctct +tttgaacagattgaatatcaacccagtgacactctcttctggatataaagacatcattctctggtttagcttcggggcat +catgttttgttcttctagccgttgtcatgggtcttttctttttctgtctgaagaatggaaacatgcgatgcacaatctgt +atttag \ No newline at end of file diff --git a/static_data/flu/serotype_references/5.fa b/static_data/flu/serotype_references/5.fa index 8794afc8..9268fa65 100644 --- a/static_data/flu/serotype_references/5.fa +++ b/static_data/flu/serotype_references/5.fa @@ -20,3 +20,23 @@ AGCAGAAGCAGGAGATTTGATTTTCAAAAATGTCTGACAGACGTCAAAACAGAAAGACGCCAGATGAGCAACGCAAAGCC ATGTCCAACATGGATATTGACGGTATCAACACTGGGACAATTGACAAAACACCGGAAGAAATAACTTCTGGAACCAGTGGGACAACCAGACCAATCATCAGACCAGCAACCCTTGCCCCACCAAGCAACAAACGAACCCGGAACCCATCCCCGGAAAGAGCAACCACAAGCAGTGAAGCTGATGTCGGAAGGAAAACCCAAAAGAAACAGACCCCGACAGAGATAAAGAAGAGCGTCTACAATATGGTAGTGAAACTGGGTGAATTCTATAACCAGATGATGGTCAAAGCTGGACTCAACGATGACATGGAGAGAAACCTAATCCAAAATGCGCATGCTGTGGAAAGAATTCTATTGGCTGCCACTGATGACAAGAAAACTGAATTCCAGAAGAAAAAGAATGCCAGAGATGTCAAAGAAGGGAAAGAAGAAATAGACCACAACAAAACAGGAGGCACCTTTTACAAGATGGTAAGAGATGATAAAACCATCTACTTCAGCCCTATAAGAATTACCTTTTTAAAAGAAGAGGTGAAAACAATGTACAAAACCACCATGGGGAGTGATGGTTTCAGTGGACTAAATCACATAATGATTGGGCATTCACAGATGAATGATGTCTGTTTCCAAAGGTCAAAGGCACTAAAAAGAGTTGGACTTGACCCTTCATTAATCAGTACCTTTGCAGGAAGCACACTCCCCAGAAGATCAGGTGCAACTGGTGTTGCGATCAAAGGAGGTGGAACTTTAGTGGTAGAAGCCATTCGATTTATAGGAAGAGCAATGGCAGACAGAGGGCTATTGAGAGACATCAAAGCCAAGACTGCCTATGAAAAGATTCTTCTGAATCTAAAAAACAAGTGCTCTGCGCCCCAACAAAAGGCTCTAGTTGATCAAGTGATCGGAAGTAGAAATCCAGGGATTGCAGACATTGAAGACCTAACCCTGCTTGCTCGTAGTATGGTCGTTGTTAGGCCCTCTTTGGCGAGCAAAGTAGTGCTTCCCATAAGCATTTATGCTAAAATACCTCAACTAGGGTTCAATGTTGAAGAATACTCTATGGTTGGGTATGAAGCCATGGCTCTTTACAATATGGCAACACCTGTTTCCATATTAAGAATGGGAGATGATGCAAAAGATAAATCGCAATTATTCTTCATGTCTTGCTTCGGAGCTGCCTATGAAGACCTGAGAGTTTTGTCTGCATTAACAGGCACAGAATTCAAGCCTAGATCAGCATTAAAATGCAAGGGTTTCCATGTTCCAGCAAAGGAACAGGTGGAAGGAATGGGGGCAGCTCTGATGTCCATCAAGCTCCAGTTTTGGGCTCCAATGACCAGATCTGGGGGGAACGAAGTAGGTGGAGACGGAGGGTCTGGCCAAATAAGTTGCAGCCCAGTGTTTGCAGTAGAAAGACCTATTGCTCTAAGCAAGCAAGCTGTAAGAAGAATGCTGTCAATGAATATTGAGGGACGTGATGCAGATGTCAAAGGAAATCTACTCAAGATGATGAATGACTCAATGGCTAAGAAAACCAATGGAAATGCTTTCATTGGGAAGAAAATGTTTCAAATATCAGACAAAAACAAAACCAATCCCGTTGAAATTCCAATTAAGCAGACCATCCCCAATTTCTTCTTTGGGAGGGACACAGCAGAGGATTATGATGACCTCGACTATTAAAGCAACAAAATAGACACTATGACTGTGATTGTTTCAGTACGTTTGGAATGTGGGTGTTTACTCTTATTGA >B-vic_B/Victoria/2/87 ATGTCCAACATGGATATTGACGGCATCAACGCTGGAACAATTGACAAAGCACCAGAAGAAACAACTTCTGGAACCAGTGGGGCAACCAGACCAATCATCAGACCAGCAACCCTTGCCCCACCAAGCAACAAACGGACCCGGAACCCATCCCCGGAAAGGGCAACCACAAGCAGTGAAGCTGATGTCGGAAGGAGAACTCAAAAGAAACAAACCCCGACAGAGATAAAAAAGAGCGTCTACAATATGGTAGTGAAACTGGGTGAATTCTACAACCAGATGATGGTCAAAGCTGGACTCAACGATGACATGGAGAGAAACCTAATCCAAAATGCACATGCTGTGGAAAGAATTCTATTGGCTGCTACTGATGACAAGAAAACTGAATTCCAGAAGAAAAAGAATGCCAGAGATGTCAAAGAAGGGAAAGAAGAAATAGACCACAACAAAACAGGAGGCACCTTTTACAAGATGGTAAGAGATGATAAAACCATCTACTTCAGCCCTATAAGAATTACCTTTTTAAAAGAAGAGGTGAAAACAATGTACAAAACCACCATGGGGAGTGATGGTTTCAGTGGACTAAATCACATCATGATTGGGCATTCACAGATGAACGATGTCTGTTTCCAAAGGTCAAAGGCATTAAAAAGAGTTGGACTTGACCCTTCACTAATCAGCACTTTTGCAGGGAGCACACTCCCCAGAAGATCAGGTACAACTGGTGTTGCGACCAAAGGAGGTGGAACTTTAGTAGCAGAAGCCATTCGATTTATAGGAAGGGCAATGGCAGACAGAGGGCTATTGAGAGACATCAAAGCCAAGACGGCCTATGAAAAGATTCTTCTGAATCTTAAAAACAAATGCTCTGCGCCCCAACAAAAGGCTCTAGTTGATCAAGTGATCGGAAGTAGAAATCCAGGGATTGCAGACATAGAAGACCTAACCCTGCTTGCTCGAAGTATGGTCGTTGTTAGGCCCTCTGTGGCGAGCAAAGTGGTGCTTCCCATAAGCATTTATGCTAAAATACCCCAACTAGGGTTCAATGTTGAAGAATACTCTATGGTTGGGTATGAAGCCATGGCTCTTTATAATATGGCAACACCTGTTTCCATATTAAGAATGGGAGATGATGCAAAAGATAAATCACAACTATTCTTCATGTCTTGCTTCGGAGCTGCCTATGAAGACCTAAGAGTTTTGTCTGCACTAACAGGCACAGAATTCAAGCCCAGATCAGCATTAAAGTGCAAGGGTTTCCACGTTCCAGCAAAGGAGCAAGTGGAAGGAATGGGAGCAGCTCTGATGTCCATCAAGCTCCAGTTTTGGGCTCCAATGACCAGATCTGGGGGGAATGAAGTAGGTGGAGACGGAGGGTCTGGCCAAATAAGTTGCAGCCCAGTGTTTGCAGTAGAAAGACCTATTGCTCTAAGCAAACAAGCTGTAAGAAGAATGCTGTCAATGAATATTGAGGGACGTGATGCAGATGTCAAAGGAAATCTACTCAAGATGATGAATGATTCAATGGCTAAGAAAACCAATGGAAATGCTTTCATTGGGAAGAAAATGTTTCAAATATCAGACAAAAACAAAACCAATCCCATTGAGATTCCAATTAAGCAGACCATCCCCAGTTTCTTCTTTGGGAGGGACACAGCAGAGGATTATGATGACCTCGATTATTAAAGCAACAAAATAGACACTGTGGCTGTGATTGTTTCAGTACGTTTGGGATGTGGGTGTTTACTCTTATTGAA +>H10N8_A/Jiangxi-Donghu/346/2013 +atggcgtctcaaggcaccaaacgatcctatgaacagatggagactggtggagaacgccagaatgctactgagatcagggc +atctgtcggaagaatggttagcggcattgggagattctacatacagatgtgtacagaactcaaactcagtgacaatgaag +ggaggctgatccagaacagtataacaatagagagaatggtactctctgcatttgatgaaagaaggaacagatacctggaa +gagcaccccagtgcgggaaaggacccgaagaaaactggaggtccaatttaccgaagaagagacgggaaatgggtgagaga +gctgatcctgtatgacaaggaggaaatcaggagaatttggcgtcaagcgaacaatggagaagacgcaactgctggtctta +cccatctgatgatatggcattccaacctgaatgatgccacatatcagagaacgagagctctcgtgcgtactggaatggac +cccaggatgtgctctctgatgcaaggatcaactctcccgaggagatctggagctgcaggagcagcagtaaaggggatagg +gacaatggtgatggagctgattcggatggtaaaacgagggataaacgaccggaatttctggagaggcgaaaatggaagaa +gaacaagagttgcatacgagaggatgtgcaacatcctcaaagggaaattccaaacagcagcacaaagagcaatggtggat +caagtgcgagagagcagaaatcctggaaatgctgaaatagaagatctcatttttctggcaaggtctgcactcatcctgag +aggatctgtggcccataagtcctgcttgcctgcttgtgtgtacggacttgcagtggccagtggatatgactttgagagag +aaggatactccctggttggaatagaccctttccgtctgcttcaaaacagccaggtttttagtctaattagaccaaatgag +aacccagcacacaagagtcaactagtgtggatggcatgccactctgcagcatttgaggaccttagagtctcaagtttcat +cagagggacaagaatggtcccaagaggacaattatccaccagaggggttcaaattgcttcaaatgagaacatggaagcaa +tggactccaacactcttgaactgagaagtagatattgggctataagaaccaggagcggagggaacaccaaccaacagagg +gcatctgcgggacagattagcgttcaacccactttctcggtacagagaaatctccccttcgaaagagcgaccattatggc +agcttttacaggaaatactgagggtagaacgtctgacatgaggactgaaatcataagaatgatggaaagtgcaagaccag +aagatgtgtcattccaggggcggggagtcttcgagctctcggacgaaaaggcaacgaacccgatcgtgccttcctttgac +atgagtaatgaaggatcttatttcttcggagacaatgcagaggagtatgacaattaa \ No newline at end of file diff --git a/static_data/flu/serotype_references/6.fa b/static_data/flu/serotype_references/6.fa index e188e094..64fe2009 100644 --- a/static_data/flu/serotype_references/6.fa +++ b/static_data/flu/serotype_references/6.fa @@ -20,3 +20,22 @@ AGCAGAAGCAGGGGATTTCAAAACAATGGCACATGAAATACTGATTGCTGAAACAGAGGCATTTCTAAAAAATGTTGCTC ATGAACAATGCTACCTTCAACTATACAAACGTTAACCCTATTTCTCACATCAGGGGGAGTGTTATTATCACTATATGTGTCAGCTTCACTGTCATACTTACTGTATTCGGATATATTGCTAAAATTTTCACCAACAGAAATAACTGCACCAAAAGTGCCATTGGATTGTGCAAACGCATCAAATGTTCAGGCTGTGAACCGTTCTGCAACAAAAGGGATGACACTTCTTCTCTCAGAACCGGAGTGGACATACCCTCGTTTATCTTGCCAGGGCTCAACCTTTCAGAAAGCACTCCTAATTAGCCCTCATAGATTCGGAGAAACCAGAGGAAACTCAGCTCCCTTGATAATAAGGGAACCTTTTATTGCTTGTGGACCAAAGGAATGCAAACACTTTGCTCTAACCCATTATGCAGCTCAACCAGGGGGATACTACAATGGAACAAGAGAGGACAGAAACAAGCTGAGGCATCTGATTTCAGTCAAATTGGGCAAAATCCCAACAGTAGAAAACTCCATTTTCCACATGGCAGCTTGGAGCGGGTCCGCATGCCATGATGGTAGAGAATGGACATATATCGGACTTGATGGCCCTGACAGTAATGCATTGATCAAAATAAAATATGGAGAAGCATATACTGACACATACCATTCCTATGCAAACAACATCCTAAGAACACAAGAAAGTGCCTGCAATTGCATCGGGGGAGATTGTTATCTTATGATAACTGATGGCTCAGCTTCAGGAATTAGTAAATGCAGATTTCTTAAGATTCGAGAGGGTCGAATAATAAAAGAAATATTTCCCACAGGAAGAGTAGAACATACTGAAGAATGCACATGCGGATTTGCCAGCAATAAAACCATAGAATGTGCCTGTAGAGATAACAGTTACACAGCAAAAAGACCCTTTGTCAAATTAAATGTGGAGACTGATACAGCTGAAATAAGATTGATGTGCACAGAGACTTATTTGGACACCCCCAGACCAGATGATGGAAGCATAACAGGGCCTTGCGAATCTAATGGGGACAAAGGGCGTGGAGGCATCAAGGGAGGATTTGTTCATCAAAGAATGGCATCCAAGATTGGAAGATGGTACTCTCGAACGATGTCTAAAACTGAAAGAATGGGGATGGAACTGTATGTCAAGTATGATGGAGACCCATGGACTGACAGTGACGCCCTTGCTCCTAGTGGAGTAATGGTTTCAATGAAAGAACCTGGTTGGTATTCCTTTGGCTTCGAAATAAAAGATAAGAAATGTGATGTCCCCTGTATTGGGATAGAGATGGTACATGATGGTGGAAAAGAGACTTGGCACTCAGCAGCAACAGCCATTTACTGTTTAATGGGCTCAGGACAATTGCTATGGGACACTGTCACAGGTGTTGATATGGCTCTGTAATGGAGGAATGGTTGAGTCTGTTCTAAACCCTTTGTTCCTATTTTGTTTGAACAATTGTCCTTACTGGACTTAATTGTTTCTCAAAAATGCTCTTGTTACTACT >B-vic_B/Victoria/2/87 ATGAACAATGCTACCTTCAACTATACAAACGTTAACCCTATTTCTCACATCAGGGGGAGTGTTATTATCACTATATGTGTCAGCCTTACTGTCATACTTACTGTATTCGGATATATTGCTAAAATTTTCACCAACAAAAATAATTGCACCAACAATGTCATTGGACTGCGCGAACGCATCAAATGTTCAGGCTGCGAACCATTCTGCAACAAAAGAGATGACATTTCTTCTCCCAGAACCGGAATGGACATACCCTCGTTTATCTTGCCAGGGCTCAACCTTTCAGAAAGCACTCCTAATTAGCCCTCATAGATTCGGAGAAGCCAAAGGAAACTCAGCTCCCTTGATAATAAGGGAACCTTTTATTGCTTGTGGACCAAAGGAGTGCAAACACTTTGCTCTAACCCATTATGCAGCTCAACCAGGGGGATACTACAATGGAACAAGAGAGGACAGAAACAAGCTGAGGCATCTGATTTCAGTCAACTTAGGCAAAATCCCAACTGTAGAAAACTCCATTTTCCACATGGCAGCTTGGAGTGGATCCGCATGCCATGATGGTAGAGAATGGACATATATCGGAGTTGATGGCCCTGACAGTAATGCATTGATCAAAATAAAATATGGAGAAGCATACACTGACACATACCATTCCTATGCAAACAACATCCTAAGAACACAAGAAAGTGCCTGCAATTGCATCGGGGGAGATTGTTATCTTATGATAACTGATGGCTCAGCTTCAGGAATTAGTAAATGCAGATTTCTTAAGATTCGAGAGGGTCGAATAATAAAAGAAATATTTCCAACAGGAAGAGTAGAGCATACTGAAGAATGCACATGCGGATTTGCCAGCAATAAAACCATAGAATGTGCCTGTAGAGATAACAGTTACACAGCAAAAAGACCCTTTGTCAAATTAAATGTGGAGACTGATACAGCTGAAATAAGATTGATGTGCACAGAGACTTATTTGGACACCCCCAGACCAGATGATGGAAGCATAACAGGGCCTTGCGAATCTAATGGGGAAAAAGGGCGTGGAGGTATCAAGGGAGGATTTGTCCATCAAAGAATGGCATCCAAGATTGGAAGATGGTACTCCCGAACGATGTCTAAAACTGAAAGAATGGGGATGGAACTGTATGTCAAGTATGATGGAGACCCATGGACTGACAGTGACGCCCTTGCTCCTAGTGGAGTAATGGTCTCAATGAAAGAACCTGGTTGGTATTCTTTCGGCTTCGAAATAAAAGATAAGAAATGTGATGTCCCCTGTATTGGGATAGAGATGGTACACGATGGTGGAAAAAAGACTTGGCACTCAGCAGCAACAGCCATTTACTGTTTAATGGGCTCAGGACAGTTGCTATGGGACACTGTCACAGGTGTTGATATGGCTTTGTAA +>H10N8_A/Jiangxi-Donghu/346/2013 +atgaatccaaatcagaaaataataaccattgggtcagtatccttaggattggtaatccttaatattctcctacacatagt +tagcattacagtaacagtattggttctcccagggaatggaaataatgagagttgcaatgaaacagtcattagggaataca +atgaaacagtaagggttgagaaggtaacacaatggcacaataccaatgttattgagtatatagagagaccggagaatgat +catttcatgaacaatacagaagcattgtgtgatgctaagggtttcgcacccttttccaaagacaacggaataagaattgg +atcgaggggtcatgtttttgtcataagggaaccgtttgtttcttgctcgccaacagagtgcaggacgttcttccttactc +aaggttccctactcaatgacaaacattctaatggcacagttaaagaccggagcccctatagaactctaatgagtgtagaa +atagggcaatcacccaatgtgtaccaggcaaggtttgaggcagtagcgtggtcagctactgcatgtcatgatgggaagaa +atggatgacaattggagtaacgggccctgatgccaaagcggtggcagtggtgcattatgggggaattcctactgatgtaa +tcaattcctgggcgggagatattttaagaactcaggaatcatcatgcacttgcattcaaggtgaatgtttttgggtaatg +acagatggaccagcaaacagacaagcgcaatacagggcgttcaaagccaaacaggggaaaatagttgggcaagctgaaat +cagtttcaatggaggccatatagaagaatgctcatgctaccccaatgaaggtaaagtggaatgtgtttgtagggacaatt +ggaccggaaccaacaggccagtgttggtgatttctccagatttgtcttacagagtcggatatttgtgtgcaggtctcccc +agtgacaccccaagaggagaagatagtcagttcacgggatcatgcactagcccaatgggaaatcagggatacggagttaa +gggatttggattcaggcagggcaatgatgtatggatgggaaggaccattagcagaacatcaagatcagggtttgaaatcc +tgaaagtcagaaatggctgggtacaaaacagtaaagagcagatcaagaggcaagttgtggtcgataacttgaattggtca +ggatacagtggttctttcacactaccagcggagttaacaaagagaaattgtttggttccatgtttttgggttgagatgat +aagggggaatccggaagaaaagacgatatggacatcaagtagctccattgtgatgtgtggagtagaccatgagattgccg +actggtcatggcacgatggagctattcttccttttgacatcgataagatgtaa \ No newline at end of file diff --git a/static_data/flu/serotype_references/7.fa b/static_data/flu/serotype_references/7.fa index 5a5c900b..16fe3e4a 100644 --- a/static_data/flu/serotype_references/7.fa +++ b/static_data/flu/serotype_references/7.fa @@ -20,3 +20,17 @@ AGCAGAAGCAGGGGTACTTTTCCAAAATGTCCGACAAAACAGTCAAATCAACAAATTTAATGGCATTTGTAGCCACAAAA ATGTCGCTGTTTGGAGACACAATTGCCTACCTGCTTTCATTGACAGAAGATGGAGAAGGCAAAGCAGAACTAGCAGAAAAATTACACTGTTGGTTCGGTGGGAAAGAATTTGACCTAGACTCTGCCTTGGAATGGATAAAAAACAAAAGATGCTTAACTGATATACAGAAAGCACTAATTGGTGCCTCTATCTGCTTTTTAAAACCCAAAGACCAAGAAAGAAAAAGAAGATTCATCACAGAGCCCCTATCAGGAATGGGGACAACAGCAACAAAAAAGAAAGGCCTGATTCTAGCTGAGAGAAAAATGAGAAGATGTGTGAGTTTTCATGAAGCATTTGAAATAGCAGAAGGCCATGAAAGCTCAGCGCTACTATATTGTCTCATGGTCATGTACCTGAACCCTGGAAATTATTCAATGCAAGTAAAACTAGGAACGCTCTGTGCTTTGTGCGAGAAACAAGCATCACATTCACACAGGGCTCATAGCAGAGCAGCAAGATCTTCAGTGCCTGGAGTGAGGCGAGAAATGCAGATGGTCTCAGCTATGAACACAGCAAAAACAATGAATGGAATGGGAAAGGGAGAAGACGTCCAAAAACTGGCAGAAGAGCTGCAAAGCAACATTGGAGTATTGAGATCTCTTGGGGCAAGTCAAAAGAATGGGGAAGGAATTGCAAAGGATGTGATGGAAGTGCTAAAGCAGAGCTCTATGGGAAATTCAGCTCTTGTGAAGAAATACCTATAATGCTCGAACCATTTCAGATTCTTTCAATTTGTTCTTTCATCTTATCAGCTCTCCATTTCATGGCTTGGACAATAGGGCATTTGAATCAAATAAAAAGAGGAGTAAACATGAAAATACGAATAAAAAATCCAAATAAAGAGACAATAAACAGAGAGGTATCAATTTTGAGACACAGTTACCAAAAAGAAATCCAGGCCAAAGAAACAATGAAGGAAGTACTCTCTGACAACATGGAGGTATTGAGTGACCACATAGTAATTGAGGGGCTTTCTGCTGAAGAGATAATAAAAATGGGTGAAACAGTTTTGGAGGTAGAAGAATTGCATTAAATTCAATTTTTACTGTATTTCTTGCTATGCATTTAAGCAAATTGTAATCAATGTCAGCAAATAAA >B-vic_B/Victoria/2/87 ATGTCGCTGTTTGGAGACACAATTGCCTACCTGCTTTCACTAACAGAAGATGGAGAAGGCAAAGCAGAACTAGCAGAAAAATTACACTGTTGGTTCGGTGGGAAAGAGTTTGACCTAGACTCTGCTTTGGAATGGATAAAAAACAAAAGATGCCTAACTGATATACAAAAAGCACTAATTGGTGCCTCTATCTGCTTTTTAAAACCCAAAGACCAAGAAAGAAAAAGAAGATTCATCACAGAGCCCCTGTCAGGAATGGGAACAACAGCAACAAAAAAGAAAGGCCTGATTCTAGCTGAGAGAAAAATGAGAAGATGTGTGAGTTTTCATGAAGCATTTGAAATAGCAGAAGGCCATGAAAGCTCAGCATTACTATATTGTCTCATGGTCATGTACCTGAACCCTGGAAATTATTCAATGCAAGTAAAACTAGGAACGCTCTGTGCTTTGTGCGAGAAACAAGCATCACACTCACACAGAGCTCATAGCAGAGCGGCAAGATCCTCAGTGCCTGGAGTGAGGAGAGAAATGCAGATGGTTTCAGCTATGAACACAGCAAAAACAATGAATGGAATGGGGAAAGGAGAAGACGTCCAAAAACTGGCAGAAGAGCTGCAAAGCAACATTGGAGTATTGAGATCCCTGGGGGCAAGTCAAAAGAATGGAGAAGGAATTGCAAAGGATGTAATGGAAGTGCTAAAGCAGAGCTCCATGGGAAATTCAGCTCTCGTGAAGAAATACCTATGATGCTCGAACCATTTCAGATTCTTTCAATTTGTTCTTTCATCTTATCAGCTCTCCATTTCATGGCTTGGACCATAGGGCATTTGAGTCAAATAAAAAGAGGGGTGAACCTGAAAATACGAATAAGAAATCCAAATAAAGAGACAATAAACAGAGAGGTATCAATTTTGAGACACAGCTATCAAAAAGAAATCCAAGCCAAAGAAACAATGAAGGAGGCACTATCTAACAAAATGGAGATATTGAGTGACCACATAGTGATTGAGGGGCTTTCTGCTGAAGAGATAATAAAAATGGGTGAAACAGTCTTGGAGGTAGAAGAACTGCAGTAGACCCAATTTTTCACCGTATTTCCTGCTATGCATTTAAGCAAATTGTAATCAATGTCAGCAAATAAA +>H10N8_A/Jiangxi-Donghu/346/2013 +atgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggccccctcaaagccgagatcgcgcagag +acttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtggataaagacaagaccaatcttgtcac +ctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgttttgtc +caaaacgccctaaatgggaatggagacccaaacaacatggacaaggcagttaaattgtacaagaaactgaagagagaaat +gacatttcatggagcaaaggaagttgcactcagttactcaactggtgcgcttgccagctgcatgggtctcatatacaaca +ggatggggacagtaaccgcagaaggggctcttggactagtatgtgccacttgtgagcagattgctgacgcacaacatcgg +tcccacaggcagatggcgactactaccaacccactaattaggcacgagaatagaatggtactagccagcactacggctaa +ggctatggagcagatggctggatcaagtgagcaggcagcggaagccatggaagtcgcaagtcaggctaggcaaatggtgc +aggctatgagaacagtcgggactcaccctaactccagtacaggtctaaaggatgatcttattgaaaatttgcaggcttac +caaaaccggatgggagtgcaactgcagcggttcaagtgatcctctcgttgttgcagctaacattattgggatattgcact +tgatattgtggattcttgatcgtcttttcttcaaatgcatttatcgtcgctttaaatacggtttgaaaagagggccttct +acggaaggaatgcctgagtctatgagggaagaatatcggcaggaacagcagaatgctgtggatgttgacgatggtcattt +tgtcaacatagagctgaagtaa \ No newline at end of file diff --git a/static_data/flu/serotype_references/8.fa b/static_data/flu/serotype_references/8.fa index 5c37b7a8..ea1240bb 100644 --- a/static_data/flu/serotype_references/8.fa +++ b/static_data/flu/serotype_references/8.fa @@ -16,3 +16,15 @@ GTGACAAAGACATAATGGATTCCAACACGATAACCTCGTTTCAGGTAGATTGTTATCTATGGCACATAAGAAAGCTACTC CGCAGAAGCAGAGGATTTATTTAGTCACTGGCAAACGGAAAGATGGCGGACAACATGACCACAACACAAATTGAGGTGGGTCCGGGAGCAACCAATGCCACTATAAACTTTGAAGCAGGAATTCTGGAGTGCTATGAAAGGTTTTCATGGCAAAGAGCCCTTGACTATCCTGGTCAAGACCGCCTACACAGACTAAAACGAAAATTAGAATCAAGAATAAAGACTCACAACAAGAGTGAGCCTGAGAATAAAAGGATGTCTCTTGAAGAGAGAAAAGCAATTGGGGTAAAAATGATGAAAGTGCTTCTGTTTATGGATCCCTCTGCTGGAATTGAAGGGTTTGAGCCATACTGTGTGAAAAATCCCTCAACTAGCAAATGTCCAAATTACGATTGGACCGATTACCCTCCAACCCCAGGAAAGTACCTTGATGACATAGAAGAAGAGCCGGAAAATGTCGATCACCCAATTGAGGTAGTATTAAGGGACATGAACAATAAAGATGCACGACAAAAGATAAAGGATGAAGTAAACACTCAGAAAGAGGGGAAATTCCGTTTGACAATAAAAAGGGATATACGTAATGTGTTGTCCTTGAGAGTGTTGGTGAACGGAACCTTCCTCAAGCACCCTAATGGAGACAAGTCCTTATCAACTCTTCATAGATTGAATGCATATGACCAGAATGGAGGGCTTGTTGCTAAACTTGTTGCTACTGATGATCGGACAGTGGAGGATGAAAAAGATGGCCATCGGATCCTCAACTCACTCTTCGAGCGTTTTGATGAAGGACATTCAAAGCCAATTCGAGCAGCTGAAACTGCGGTGGGAGTCTTATCCCAATTTGGTCAAGAGCACCGATTATCACCAGAAGAGGGAGACAATTAGACTGGCCACGGAAGAACTTTATCTCTTGAGTAAAAGAATTGATGATAGTATATTGTTCCACAAAACAGTAATAGCTAACAGCTCCATAATAGCTGACATGATTGTATCATTATCATTACTGGAAACATTGTATGAAATGAAGGATGTGGTTGAAGTGTACAGCAGGCAGTGCTTATGAATGTAAAATAAAAATCCTCTTGTTACTACT >B-yam_B/Yamagata/16/88 ATGGCGGACAACATGACCACAACACAAATTGAGGTGGGTCCGGGAGCAACCAATGCCACCATAAACTTTGAAGCAGGAATTTTGGAGTGCTACGAAAGGCTTTCATGGCAAAGAGCCCTTGACTACCCTGGTCAAGACCGCCTAAACAGACTAAAGAGAAAATTAGAATCAAGAATAAAGACTCACAACAAAAGTGAGCCTGAAAGTAAAAGGATGTCTCTTGAAGAGAGAAAAGCTATTGGAGTAAAAATGATGAAAGTGCTCCTATTTATGAACCCATCTGCTGGAGTTGAAGGGTTTGAGCCATATTGTATGAAAAATTCCTCCAATAGCAACTGTCCAGACTGCAATTGGGCTGATTACCCTCCAACACCAGGAAAGTACCTTGATGACATAGAAGAAGAACCGGAGAATGTTGGTGACCCAACTGAAATAGTATTAAGGGACATGAACAACAAAGATGCAAGGCAAAAGATAAAAGAGGAAGTAAACACTCAGAAAGAAGGGAAATTCCGTTTGACAATAAAAAGGGATATACGTAATGTGTTGTCCTTGAGAGTGTTGGTAAACGGAACATTCATCAAGCACCCTAATGGATACAAGTCCTTATCAACTCTGCATAGATTGAATGCATATGACCAGAGTGGAAGACTTGTTGCTAAACTTGTTGCTACTGATGATCTTACAGTGGAGGATGAAGAAGATGGCCATCGGATCCTCAACTCACTCTTCGAGCGTTTTAATGAAGGACATTCAAAGCCAATTCGAGCAGCTGAAACTGCGGTGGGAGTCTTATCCCAATTTGGTCAAGAGCACCGATTATCACCAGAAGAGAGAGACAATTAGACTGGTTACGGAAGAACTTTATCTTTTAAGTAAAAGAATTGATGATAACATATTGTTCCACAAAACAGTAATAGCCAACAGCTCCATAATAGCTGACATGATTGTATCATTATCATTATTGGAAACATTGTATGAAATGAAGGATGTGGTTGAAGTGTACAGCAGGCAGTGCTTGTGAAT +>H10N8_A/Jiangxi-Donghu/346/2013 +atggattccaacactgtgtcaagcttccaggtagactgctttctttggcatgtccgcaaacggtttgcagaccaagaact +gggtgatgccccatttctagaccggcttcgccgagatcagaagtccctgagaggaagaagcagcactcttggtctggaca +tcagaacagcaactcgtgaaggaaagcatatagtggagcgaattctggaggaagagtcagacgaagcatttaaaatgact +attgcttcagtgccagctccacgctatctaactgacatgactcttgaagaaatgtcaagagattggttaatgctcatacc +caaacagaaagtgacagggtccctttgcattagaatggaccaagcaatagtggacaaaaacatcacattgaaagcaaatt +tcagtgtgattttcaatcgattggaagccctaatactacttagagcttttacggatgaaggagcaatagtgggcgaaatc +tcaccattaccttctcttccaggacatactgacaaggatgtcaaaaatgcaattgaggtcctcatcggaggatttgaatg +gaatgataacacagttcgagtctctgaaactctacagagattcgcttggagaagcggcgatgaggatgggagacctccac +tctctccaaagtaggaacgggaaatggagagaacaattaagccagaagttcgaagaaataagatggttgattgaagaagt +acgacataggttaaagattacagagaatagctttgaacaaataacttttatgcaagccttacaactattgcttgaagtgg +agcaagagataagaactttctcgtttcagcttatttaa \ No newline at end of file