From 75c520efdaaa45d8000a758b0368ee41d34f6a82 Mon Sep 17 00:00:00 2001 From: Albert Tian Chen Date: Thu, 18 Apr 2024 09:28:52 -0400 Subject: [PATCH] Fix typos, add processed files --- static_data/flu/genes_processed.json | 1477 ++++++++++++++- .../H10NX/A-Jiangsu-428-2021/1.fa | 2 +- .../H10NX/A-Jiangsu-428-2021/2.fa | 2 +- .../H10NX/A-Jiangsu-428-2021/3.fa | 2 +- .../H10NX/A-Jiangsu-428-2021/4.fa | 2 +- .../H10NX/A-Jiangsu-428-2021/5.fa | 2 +- .../H10NX/A-Jiangsu-428-2021/6.fa | 2 +- .../H10NX/A-Jiangsu-428-2021/7.fa | 2 +- .../H10NX/A-Jiangsu-428-2021/8.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/1.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/2.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/3.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/4.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/5.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/6.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/7.fa | 2 +- .../H10NX/A-Jiangxi-Donghu-346-2013/8.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/1.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/2.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/3.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/4.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/5.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/6.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/7.fa | 2 +- .../mut_references/H7NX/A-Anhui-1-2013/8.fa | 2 +- static_data/flu/proteins_processed.json | 1655 ++++++++++++++++- static_data/flu/reference.json | 141 ++ 27 files changed, 3146 insertions(+), 175 deletions(-) diff --git a/static_data/flu/genes_processed.json b/static_data/flu/genes_processed.json index 3d8ef1e7..b904c3ae 100644 --- a/static_data/flu/genes_processed.json +++ b/static_data/flu/genes_processed.json @@ -6447,14 +6447,14 @@ "row": 9 } ], - "A-Hong-Kong-1073-99": [ + "A-Anhui-1-2013": [ { "name": "PB2", "segment": "1", "segments": [ [ - 28, - 2307 + 1, + 2280 ] ], "protein_coding": true, @@ -6468,8 +6468,8 @@ 760 ], "nt_range": [ - 28, - 2307 + 1, + 2280 ], "aa_ranges": [ [ @@ -6490,34 +6490,34 @@ "segment": "2", "segments": [ [ - 24, - 2300 + 1, + 2274 ] ], "protein_coding": true, "residue_offset": 0, "domains": [], "notes": "", - "len_nt": 2277, - "len_aa": 759, + "len_nt": 2274, + "len_aa": 758, "residue_offset_range": [ 1, - 759 + 758 ], "nt_range": [ - 24, - 2300 + 1, + 2274 ], "aa_ranges": [ [ 1, - 759 + 758 ] ], "nt_ranges": [ [ 1, - 2277 + 2274 ] ], "row": 1 @@ -6527,8 +6527,8 @@ "segment": "3", "segments": [ [ - 21, - 2171 + 1, + 2151 ] ], "protein_coding": true, @@ -6542,8 +6542,8 @@ 717 ], "nt_range": [ - 21, - 2171 + 1, + 2151 ], "aa_ranges": [ [ @@ -6565,7 +6565,7 @@ "segments": [ [ 1, - 1714 + 1683 ] ], "protein_coding": true, @@ -6592,14 +6592,14 @@ "ranges": [ [ 1, - 320 + 321 ] ], "row": 1, "nt_ranges": [ [ 55, - 1014 + 1017 ] ] }, @@ -6607,40 +6607,40 @@ "name": "HA2", "ranges": [ [ - 321, + 322, 542 ] ], "row": 0, "nt_ranges": [ [ - 1015, + 1018, 1680 ] ] } ], "notes": "", - "len_nt": 1714, - "len_aa": 571, + "len_nt": 1683, + "len_aa": 561, "residue_offset_range": [ -17, - 553 + 543 ], "nt_range": [ 1, - 1714 + 1683 ], "aa_ranges": [ [ 1, - 571 + 561 ] ], "nt_ranges": [ [ 1, - 1713 + 1683 ] ], "row": 3 @@ -6650,8 +6650,8 @@ "segment": "5", "segments": [ [ - 40, - 1536 + 1, + 1497 ] ], "protein_coding": true, @@ -6665,8 +6665,8 @@ 499 ], "nt_range": [ - 40, - 1536 + 1, + 1497 ], "aa_ranges": [ [ @@ -6688,33 +6688,33 @@ "segments": [ [ 1, - 1404 + 1398 ] ], "protein_coding": true, "residue_offset": 0, "domains": [], "notes": "", - "len_nt": 1404, - "len_aa": 468, + "len_nt": 1398, + "len_aa": 466, "residue_offset_range": [ 1, - 468 + 466 ], "nt_range": [ 1, - 1404 + 1398 ], "aa_ranges": [ [ 1, - 468 + 466 ] ], "nt_ranges": [ [ 1, - 1404 + 1398 ] ], "row": 5 @@ -6724,8 +6724,8 @@ "segment": "7", "segments": [ [ - 33, - 791 + 1, + 759 ] ], "protein_coding": true, @@ -6739,8 +6739,8 @@ 253 ], "nt_range": [ - 33, - 791 + 1, + 759 ], "aa_ranges": [ [ @@ -6761,12 +6761,12 @@ "segment": "7", "segments": [ [ - 33, - 59 + 1, + 26 ], [ - 748, - 1014 + 715, + 982 ] ], "protein_coding": true, @@ -6780,27 +6780,27 @@ 98 ], "nt_range": [ - 33, - 1014 + 1, + 982 ], "aa_ranges": [ [ 1, - 9 + 8 ], [ - 10, - 98 + 9, + 97 ] ], "nt_ranges": [ [ 1, - 27 + 24 ], [ - 28, - 294 + 25, + 291 ] ], "row": 7 @@ -6810,12 +6810,12 @@ "segment": "8", "segments": [ [ - 27, - 56 + 1, + 30 ], [ - 529, - 864 + 503, + 838 ] ], "protein_coding": true, @@ -6829,8 +6829,8 @@ 122 ], "nt_range": [ - 27, - 864 + 1, + 838 ], "aa_ranges": [ [ @@ -6859,34 +6859,1369 @@ "segment": "8", "segments": [ [ - 27, - 719 + 1, + 654 ] ], "protein_coding": true, "residue_offset": 0, "domains": [], "notes": "", - "len_nt": 693, - "len_aa": 231, + "len_nt": 654, + "len_aa": 218, "residue_offset_range": [ 1, - 231 + 218 ], "nt_range": [ - 27, - 719 + 1, + 654 ], "aa_ranges": [ [ 1, - 231 + 218 ] ], "nt_ranges": [ [ 1, - 693 + 654 + ] + ], + "row": 9 + } + ], + "A-Hong-Kong-1073-99": [ + { + "name": "PB2", + "segment": "1", + "segments": [ + [ + 28, + 2307 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2280, + "len_aa": 760, + "residue_offset_range": [ + 1, + 760 + ], + "nt_range": [ + 28, + 2307 + ], + "aa_ranges": [ + [ + 1, + 760 + ] + ], + "nt_ranges": [ + [ + 1, + 2280 + ] + ], + "row": 0 + }, + { + "name": "PB1", + "segment": "2", + "segments": [ + [ + 24, + 2300 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2277, + "len_aa": 759, + "residue_offset_range": [ + 1, + 759 + ], + "nt_range": [ + 24, + 2300 + ], + "aa_ranges": [ + [ + 1, + 759 + ] + ], + "nt_ranges": [ + [ + 1, + 2277 + ] + ], + "row": 1 + }, + { + "name": "PA", + "segment": "3", + "segments": [ + [ + 21, + 2171 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2151, + "len_aa": 717, + "residue_offset_range": [ + 1, + 717 + ], + "nt_range": [ + 21, + 2171 + ], + "aa_ranges": [ + [ + 1, + 717 + ] + ], + "nt_ranges": [ + [ + 1, + 2151 + ] + ], + "row": 2 + }, + { + "name": "HA", + "segment": "4", + "segments": [ + [ + 1, + 1714 + ] + ], + "protein_coding": true, + "residue_offset": 18, + "domains": [ + { + "name": "signal peptide", + "ranges": [ + [ + -17, + 0 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1, + 54 + ] + ] + }, + { + "name": "HA1", + "ranges": [ + [ + 1, + 320 + ] + ], + "row": 1, + "nt_ranges": [ + [ + 55, + 1014 + ] + ] + }, + { + "name": "HA2", + "ranges": [ + [ + 321, + 542 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1015, + 1680 + ] + ] + } + ], + "notes": "", + "len_nt": 1714, + "len_aa": 571, + "residue_offset_range": [ + -17, + 553 + ], + "nt_range": [ + 1, + 1714 + ], + "aa_ranges": [ + [ + 1, + 571 + ] + ], + "nt_ranges": [ + [ + 1, + 1713 + ] + ], + "row": 3 + }, + { + "name": "NP", + "segment": "5", + "segments": [ + [ + 40, + 1536 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1497, + "len_aa": 499, + "residue_offset_range": [ + 1, + 499 + ], + "nt_range": [ + 40, + 1536 + ], + "aa_ranges": [ + [ + 1, + 499 + ] + ], + "nt_ranges": [ + [ + 1, + 1497 + ] + ], + "row": 4 + }, + { + "name": "NA", + "segment": "6", + "segments": [ + [ + 1, + 1404 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1404, + "len_aa": 468, + "residue_offset_range": [ + 1, + 468 + ], + "nt_range": [ + 1, + 1404 + ], + "aa_ranges": [ + [ + 1, + 468 + ] + ], + "nt_ranges": [ + [ + 1, + 1404 + ] + ], + "row": 5 + }, + { + "name": "M1", + "segment": "7", + "segments": [ + [ + 33, + 791 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 759, + "len_aa": 253, + "residue_offset_range": [ + 1, + 253 + ], + "nt_range": [ + 33, + 791 + ], + "aa_ranges": [ + [ + 1, + 253 + ] + ], + "nt_ranges": [ + [ + 1, + 759 + ] + ], + "row": 6 + }, + { + "name": "M2", + "segment": "7", + "segments": [ + [ + 33, + 59 + ], + [ + 748, + 1014 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 294, + "len_aa": 98, + "residue_offset_range": [ + 1, + 98 + ], + "nt_range": [ + 33, + 1014 + ], + "aa_ranges": [ + [ + 1, + 9 + ], + [ + 10, + 98 + ] + ], + "nt_ranges": [ + [ + 1, + 27 + ], + [ + 28, + 294 + ] + ], + "row": 7 + }, + { + "name": "NEP", + "segment": "8", + "segments": [ + [ + 27, + 56 + ], + [ + 529, + 864 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 366, + "len_aa": 122, + "residue_offset_range": [ + 1, + 122 + ], + "nt_range": [ + 27, + 864 + ], + "aa_ranges": [ + [ + 1, + 10 + ], + [ + 11, + 122 + ] + ], + "nt_ranges": [ + [ + 1, + 30 + ], + [ + 31, + 366 + ] + ], + "row": 8 + }, + { + "name": "NS1", + "segment": "8", + "segments": [ + [ + 27, + 719 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 693, + "len_aa": 231, + "residue_offset_range": [ + 1, + 231 + ], + "nt_range": [ + 27, + 719 + ], + "aa_ranges": [ + [ + 1, + 231 + ] + ], + "nt_ranges": [ + [ + 1, + 693 + ] + ], + "row": 9 + } + ], + "A-Jiangsu-428-2021": [ + { + "name": "PB2", + "segment": "1", + "segments": [ + [ + 28, + 2307 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2280, + "len_aa": 760, + "residue_offset_range": [ + 1, + 760 + ], + "nt_range": [ + 28, + 2307 + ], + "aa_ranges": [ + [ + 1, + 760 + ] + ], + "nt_ranges": [ + [ + 1, + 2280 + ] + ], + "row": 0 + }, + { + "name": "PB1", + "segment": "2", + "segments": [ + [ + 25, + 2298 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2274, + "len_aa": 758, + "residue_offset_range": [ + 1, + 758 + ], + "nt_range": [ + 25, + 2298 + ], + "aa_ranges": [ + [ + 1, + 758 + ] + ], + "nt_ranges": [ + [ + 1, + 2274 + ] + ], + "row": 1 + }, + { + "name": "PA", + "segment": "3", + "segments": [ + [ + 25, + 2175 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2151, + "len_aa": 717, + "residue_offset_range": [ + 1, + 717 + ], + "nt_range": [ + 25, + 2175 + ], + "aa_ranges": [ + [ + 1, + 717 + ] + ], + "nt_ranges": [ + [ + 1, + 2151 + ] + ], + "row": 2 + }, + { + "name": "HA", + "segment": "4", + "segments": [ + [ + 20, + 1705 + ] + ], + "protein_coding": true, + "residue_offset": 16, + "domains": [ + { + "name": "signal peptide", + "ranges": [ + [ + -15, + 0 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 20, + 67 + ] + ] + }, + { + "name": "HA1", + "ranges": [ + [ + 1, + 324 + ] + ], + "row": 1, + "nt_ranges": [ + [ + 68, + 1039 + ] + ] + }, + { + "name": "HA2", + "ranges": [ + [ + 325, + 545 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1040, + 1702 + ] + ] + } + ], + "notes": "", + "len_nt": 1686, + "len_aa": 562, + "residue_offset_range": [ + -15, + 546 + ], + "nt_range": [ + 20, + 1705 + ], + "aa_ranges": [ + [ + 1, + 562 + ] + ], + "nt_ranges": [ + [ + 1, + 1686 + ] + ], + "row": 3 + }, + { + "name": "NP", + "segment": "5", + "segments": [ + [ + 46, + 1542 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1497, + "len_aa": 499, + "residue_offset_range": [ + 1, + 499 + ], + "nt_range": [ + 46, + 1542 + ], + "aa_ranges": [ + [ + 1, + 499 + ] + ], + "nt_ranges": [ + [ + 1, + 1497 + ] + ], + "row": 4 + }, + { + "name": "NA", + "segment": "6", + "segments": [ + [ + 19, + 1428 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1410, + "len_aa": 470, + "residue_offset_range": [ + 1, + 470 + ], + "nt_range": [ + 19, + 1428 + ], + "aa_ranges": [ + [ + 1, + 470 + ] + ], + "nt_ranges": [ + [ + 1, + 1410 + ] + ], + "row": 5 + }, + { + "name": "M1", + "segment": "7", + "segments": [ + [ + 26, + 784 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 759, + "len_aa": 253, + "residue_offset_range": [ + 1, + 253 + ], + "nt_range": [ + 26, + 784 + ], + "aa_ranges": [ + [ + 1, + 253 + ] + ], + "nt_ranges": [ + [ + 1, + 759 + ] + ], + "row": 6 + }, + { + "name": "M2", + "segment": "7", + "segments": [ + [ + 26, + 51 + ], + [ + 740, + 1007 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 294, + "len_aa": 98, + "residue_offset_range": [ + 1, + 98 + ], + "nt_range": [ + 26, + 1007 + ], + "aa_ranges": [ + [ + 1, + 8 + ], + [ + 9, + 97 + ] + ], + "nt_ranges": [ + [ + 1, + 24 + ], + [ + 25, + 291 + ] + ], + "row": 7 + }, + { + "name": "NS1", + "segment": "8", + "segments": [ + [ + 27, + 680 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 654, + "len_aa": 218, + "residue_offset_range": [ + 1, + 218 + ], + "nt_range": [ + 27, + 680 + ], + "aa_ranges": [ + [ + 1, + 218 + ] + ], + "nt_ranges": [ + [ + 1, + 654 + ] + ], + "row": 8 + }, + { + "name": "NEP", + "segment": "8", + "segments": [ + [ + 27, + 56 + ], + [ + 529, + 864 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 366, + "len_aa": 122, + "residue_offset_range": [ + 1, + 122 + ], + "nt_range": [ + 27, + 864 + ], + "aa_ranges": [ + [ + 1, + 10 + ], + [ + 11, + 122 + ] + ], + "nt_ranges": [ + [ + 1, + 30 + ], + [ + 31, + 366 + ] + ], + "row": 9 + } + ], + "A-Jiangxi-Donghu-346-2013": [ + { + "name": "PB2", + "segment": "1", + "segments": [ + [ + 1, + 2280 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2280, + "len_aa": 760, + "residue_offset_range": [ + 1, + 760 + ], + "nt_range": [ + 1, + 2280 + ], + "aa_ranges": [ + [ + 1, + 760 + ] + ], + "nt_ranges": [ + [ + 1, + 2280 + ] + ], + "row": 0 + }, + { + "name": "PB1", + "segment": "2", + "segments": [ + [ + 1, + 2274 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2274, + "len_aa": 758, + "residue_offset_range": [ + 1, + 758 + ], + "nt_range": [ + 1, + 2274 + ], + "aa_ranges": [ + [ + 1, + 758 + ] + ], + "nt_ranges": [ + [ + 1, + 2274 + ] + ], + "row": 1 + }, + { + "name": "PA", + "segment": "3", + "segments": [ + [ + 1, + 2151 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2151, + "len_aa": 717, + "residue_offset_range": [ + 1, + 717 + ], + "nt_range": [ + 1, + 2151 + ], + "aa_ranges": [ + [ + 1, + 717 + ] + ], + "nt_ranges": [ + [ + 1, + 2151 + ] + ], + "row": 2 + }, + { + "name": "HA", + "segment": "4", + "segments": [ + [ + 1, + 1686 + ] + ], + "protein_coding": true, + "residue_offset": 16, + "domains": [ + { + "name": "signal peptide", + "ranges": [ + [ + -15, + 0 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1, + 48 + ] + ] + }, + { + "name": "HA1", + "ranges": [ + [ + 1, + 324 + ] + ], + "row": 1, + "nt_ranges": [ + [ + 49, + 1020 + ] + ] + }, + { + "name": "HA2", + "ranges": [ + [ + 325, + 545 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1021, + 1683 + ] + ] + } + ], + "notes": "", + "len_nt": 1686, + "len_aa": 562, + "residue_offset_range": [ + -15, + 546 + ], + "nt_range": [ + 1, + 1686 + ], + "aa_ranges": [ + [ + 1, + 562 + ] + ], + "nt_ranges": [ + [ + 1, + 1686 + ] + ], + "row": 3 + }, + { + "name": "NP", + "segment": "5", + "segments": [ + [ + 1, + 1497 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1497, + "len_aa": 499, + "residue_offset_range": [ + 1, + 499 + ], + "nt_range": [ + 1, + 1497 + ], + "aa_ranges": [ + [ + 1, + 499 + ] + ], + "nt_ranges": [ + [ + 1, + 1497 + ] + ], + "row": 4 + }, + { + "name": "NA", + "segment": "6", + "segments": [ + [ + 1, + 1413 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1413, + "len_aa": 471, + "residue_offset_range": [ + 1, + 471 + ], + "nt_range": [ + 1, + 1413 + ], + "aa_ranges": [ + [ + 1, + 471 + ] + ], + "nt_ranges": [ + [ + 1, + 1413 + ] + ], + "row": 5 + }, + { + "name": "M1", + "segment": "7", + "segments": [ + [ + 1, + 759 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 759, + "len_aa": 253, + "residue_offset_range": [ + 1, + 253 + ], + "nt_range": [ + 1, + 759 + ], + "aa_ranges": [ + [ + 1, + 253 + ] + ], + "nt_ranges": [ + [ + 1, + 759 + ] + ], + "row": 6 + }, + { + "name": "M2", + "segment": "7", + "segments": [ + [ + 1, + 26 + ], + [ + 715, + 982 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 294, + "len_aa": 98, + "residue_offset_range": [ + 1, + 98 + ], + "nt_range": [ + 1, + 982 + ], + "aa_ranges": [ + [ + 1, + 8 + ], + [ + 9, + 97 + ] + ], + "nt_ranges": [ + [ + 1, + 24 + ], + [ + 25, + 291 + ] + ], + "row": 7 + }, + { + "name": "NS1", + "segment": "8", + "segments": [ + [ + 1, + 654 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 654, + "len_aa": 218, + "residue_offset_range": [ + 1, + 218 + ], + "nt_range": [ + 1, + 654 + ], + "aa_ranges": [ + [ + 1, + 218 + ] + ], + "nt_ranges": [ + [ + 1, + 654 + ] + ], + "row": 8 + }, + { + "name": "NEP", + "segment": "8", + "segments": [ + [ + 1, + 30 + ], + [ + 503, + 838 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 366, + "len_aa": 122, + "residue_offset_range": [ + 1, + 122 + ], + "nt_range": [ + 1, + 838 + ], + "aa_ranges": [ + [ + 1, + 10 + ], + [ + 11, + 122 + ] + ], + "nt_ranges": [ + [ + 1, + 30 + ], + [ + 31, + 366 ] ], "row": 9 diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/1.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/1.fa index 5da0df23..763ef963 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/1.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/1.fa @@ -1,4 +1,4 @@ ->EPI1868397|A/Jiangsu/428/2021|EPI_ISL_2380100|PB2|Original|WHO Chinese National Influenza Center +>EPI1868397|A/Jiangsu/428/2021|EPI_ISL_2380100|PB2|Original|WHO-Chinese-National-Influenza-Center agcaaaagcaggtcaaatatattcaatatggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcga gatactgacaaaaacaactgtggaccatatggccataattaagaaatacacatcgggaagacaggagaagaatcctgccc ttaggatgaagtggatgatggcaatgaagtatccaattacagcagacaaaaggataatggagatgatcccagaaaggaat diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/2.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/2.fa index 138caca2..89565629 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/2.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/2.fa @@ -1,4 +1,4 @@ ->EPI1868396|A/Jiangsu/428/2021|EPI_ISL_2380100|PB1|Original|WHO Chinese National Influenza Center +>EPI1868396|A/Jiangsu/428/2021|EPI_ISL_2380100|PB1|Original|WHO-Chinese-National-Influenza-Center agcaaaagcaggcaaaccatttgaatggatgtcaatccgactttacttttcttgaaagtgccagtgcaaaatgctataag taccactttcccttatactggagaccctccatacagccatggaacgggaacagggtacaccatggacacagtcaacagaa cacataaatactcagaaaaaggaaaatggacaacgaacacagagactggagcaccccaactcaatccagttgatggacca diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/3.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/3.fa index 69be3d1f..e532b0c1 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/3.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/3.fa @@ -1,4 +1,4 @@ ->EPI1868395|A/Jiangsu/428/2021|EPI_ISL_2380100|PA|Original|WHO Chinese National Influenza Center +>EPI1868395|A/Jiangsu/428/2021|EPI_ISL_2380100|PA|Original|WHO-Chinese-National-Influenza-Center agcaaaagcaggtactgatccaaaatggaagactttgtgcgacaatgcttcaatccaatgatcgtcgagcttgcggaaaa ggcaatgaaagagtatggggaagatccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgct tcatgtattctgatttccacttcattgacgaacgaggcgaatcaactattattgaatctggcgatccaaatgtattgttg diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/4.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/4.fa index 186aa771..9d68402e 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/4.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/4.fa @@ -1,4 +1,4 @@ ->EPI1868394|A/Jiangsu/428/2021|EPI_ISL_2380100|HA|Original|WHO Chinese National Influenza Center +>EPI1868394|A/Jiangsu/428/2021|EPI_ISL_2380100|HA|Original|WHO-Chinese-National-Influenza-Center agcaaaagcaggggtcacaatgtacaaaatagtagtgataatcgcgttccttggaactgtgaaggctcttgataagatct gcctgggacatcatgcagtggccaatgggaccattgtaaagactctcacaagtgaacaggaagaggtgacaaatgctact gagacagtggagagcaaaggcctaaacaaattatgtatgaagggaaggaaccataaagacctgggcaactgccatccaat diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/5.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/5.fa index 50dff561..7f529c2d 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/5.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/5.fa @@ -1,4 +1,4 @@ ->EPI1868393|A/Jiangsu/428/2021|EPI_ISL_2380100|NP|Original|WHO Chinese National Influenza Center +>EPI1868393|A/Jiangsu/428/2021|EPI_ISL_2380100|NP|Original|WHO-Chinese-National-Influenza-Center agcaaaagcagggtagataatcactcactgagtgacatcaacatcatggcgtctcaaggcaccaaacgatcctatgaaca gatggagactggtggagaacgccagaatgctactgagatcagggcatctgtcggaagaatggttagcggcattgggagat tctacatacaaatgtgtacagaactcaaactcagtgacaatgaagggaggctgatccagaacagtataacaatagagaga diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa index e9f409de..0fa7d7ee 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/6.fa @@ -1,4 +1,4 @@ ->EPI1868392|A/Jiangsu/428/2021|EPI_ISL_2380100|NA|Original|WHO Chinese National Influenza Center +>EPI1868392|A/Jiangsu/428/2021|EPI_ISL_2380100|NA|Original|WHO-Chinese-National-Influenza-Center agcaaaagcaggtgcgaaatgaatccaaatcagaagataataacactcggtgtagtgaacacaactctgtcaacattagc cctcctcattggaattgggaatcagattttcaacattgttatacatgagaaagtaggagtacatcaaactgtggtatgcc caacaacaacacccacagtggtaccaaactgcagtgaaaccacaattacatacaacaacactgtggtaaacaacataaca diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa index 05a63e28..91982f10 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/7.fa @@ -1,4 +1,4 @@ ->EPI1868391|A/Jiangsu/428/2021|EPI_ISL_2380100|MP|Original|WHO Chinese National Influenza Center +>EPI1868391|A/Jiangsu/428/2021|EPI_ISL_2380100|MP|Original|WHO-Chinese-National-Influenza-Center agcaaaagcaggtagatgtttaaagatgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggcc ccctcaaagccgagatcgcgcaaagacttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtgg ataaagacaagaccaatcctgtcacctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcg diff --git a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa index bbc13495..c9f34773 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangsu-428-2021/8.fa @@ -1,4 +1,4 @@ ->EPI1868390|A/Jiangsu/428/2021|EPI_ISL_2380100|NS|Original|WHO Chinese National Influenza Center +>EPI1868390|A/Jiangsu/428/2021|EPI_ISL_2380100|NS|Original|WHO-Chinese-National-Influenza-Center agcaaaagcagggtgacaaagacataatggattccaacacagtatcaagcttccaggtagactgctttctttggcatgtt cgcaaacgatttgcagaccaagaaatgggtgatgccccatttctagaccggcttcgccgagatcaaaagtccctgagggg aagaagcagcactcttggtctagacatcagaactgcaacacgtgaaggaaagcatatagtggagcggattttagaagaag diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa index 080f02ac..3f5e2a56 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/1.fa @@ -1,4 +1,4 @@ ->EPI497484|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB2|E1|WHO Chinese National Influenza Center +>EPI497484|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB2|E1|WHO-Chinese-National-Influenza-Center atggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcgagatactgacaaaaacaactgtggacca tatggccataatcaagaaatacacatcgggaagacaggagaagaatcctgcccttaggatgaagtggatgatggcgatga aatatccaattacagcagacaaaaggataatggagatgatcccagaaaggaatgagcaaggtcagaccctttggagcaag diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa index f6ddbd3d..b38e6a1b 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/2.fa @@ -1,4 +1,4 @@ ->EPI497483|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB1|E1|WHO Chinese National Influenza Center +>EPI497483|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB1|E1|WHO-Chinese-National-Influenza-Center atggatgtcaacccgactttacttttcttgaaagtgccagcgcaaaatgccataagtacaacgttcccttatactggaga ccctccatacagccatggaacaggaacaggatacaccatggacacagtcaacagaacacataaatactcagaaaatggaa agtggacaacgaacacagagactggagcaccccaactaaatccgattgatggaccattgcctgaggacaacgagccaagt diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa index 27658f3e..a5686ee6 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/3.fa @@ -1,4 +1,4 @@ ->EPI497482|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PA|E1|WHO Chinese National Influenza Center +>EPI497482|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PA|E1|WHO-Chinese-National-Influenza-Center atggaagactttgtgcgacaatgcttcaatccaatgatcgtcgagcttgcggaaaaggcaatgaaagaatatggggaaga tccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgcttcatgtattctgatttccacttca ttgacgaacggggcgaatcaactattatagaatctggcgatccaaatgcgttgttgaaacatcgatttgaaataatcgaa diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/4.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/4.fa index f559431f..19c0862b 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/4.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/4.fa @@ -1,4 +1,4 @@ ->EPI497477|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|HA|E1|WHO Chinese National Influenza Center +>EPI497477|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|HA|E1|WHO-Chinese-National-Influenza-Center atgtacaaaatagtagtgataatcgcgctccttggagctgtgaaaggtcttgataaaatctgtctaggacatcatgcagt ggctaatgggaccatcgtaaagactctcacaaacgaacaggaagaggtaaccaacgctactgaaacagtggagagtacag gcataaacagattatgtatgaaaggaagaaaacataaagacctgggcaactgccatccaatagggatgctaatagggact diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/5.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/5.fa index cd5e898f..b1c394f0 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/5.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/5.fa @@ -1,4 +1,4 @@ ->EPI497480|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NP|E1|WHO Chinese National Influenza Center +>EPI497480|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NP|E1|WHO-Chinese-National-Influenza-Center atggcgtctcaaggcaccaaacgatcctatgaacagatggagactggtggagaacgccagaatgctactgagatcagggc atctgtcggaagaatggttagcggcattgggagattctacatacagatgtgtacagaactcaaactcagtgacaatgaag ggaggctgatccagaacagtataacaatagagagaatggtactctctgcatttgatgaaagaaggaacagatacctggaa diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/6.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/6.fa index a4d4b897..ddfe4ca5 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/6.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/6.fa @@ -1,4 +1,4 @@ ->EPI497479|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NA|E1|WHO Chinese National Influenza Center +>EPI497479|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NA|E1|WHO-Chinese-National-Influenza-Center atgaatccaaatcagaaaataataaccattgggtcagtatccttaggattggtaatccttaatattctcctacacatagt tagcattacagtaacagtattggttctcccagggaatggaaataatgagagttgcaatgaaacagtcattagggaataca atgaaacagtaagggttgagaaggtaacacaatggcacaataccaatgttattgagtatatagagagaccggagaatgat diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/7.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/7.fa index 11b91818..bfe19e10 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/7.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/7.fa @@ -1,4 +1,4 @@ ->EPI497478|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|MP|E1|WHO Chinese National Influenza Center +>EPI497478|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|MP|E1|WHO-Chinese-National-Influenza-Center atgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggccccctcaaagccgagatcgcgcagag acttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtggataaagacaagaccaatcttgtcac ctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgttttgtc diff --git a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa index ac863a90..9a7f2bf3 100644 --- a/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa +++ b/static_data/flu/mut_references/H10NX/A-Jiangxi-Donghu-346-2013/8.fa @@ -1,4 +1,4 @@ ->EPI497481|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NS|E1|WHO Chinese National Influenza Center +>EPI497481|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NS|E1|WHO-Chinese-National-Influenza-Center atggattccaacactgtgtcaagcttccaggtagactgctttctttggcatgtccgcaaacggtttgcagaccaagaact gggtgatgccccatttctagaccggcttcgccgagatcagaagtccctgagaggaagaagcagcactcttggtctggaca tcagaacagcaactcgtgaaggaaagcatatagtggagcgaattctggaggaagagtcagacgaagcatttaaaatgact diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa index 521679a3..833ac2a8 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/1.fa @@ -1,4 +1,4 @@ ->EPI439504|A/Anhui/1/2013|EPI_ISL_138739|PB2|E1|WHO Chinese National Influenza Center +>EPI439504|A/Anhui/1/2013|EPI_ISL_138739|PB2|E1|WHO-Chinese-National-Influenza-Center atggaaagaataaaagaactaagagatttgatgtcacagtctcgcactcgcgagatactgacaaaaacaactgtggacca tatggccataatcaagaaatatacatcaggaagacaggagaagaatcctgcccttaggatgaagtggatgatggcaatga aatatccaattacggcagacaaaaggataatggagatgatcccggaaagaaatgagcaaggtcagaccctttggagcaag diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa index ce374ed3..a1ad9d34 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/2.fa @@ -1,4 +1,4 @@ ->EPI439508|A/Anhui/1/2013|EPI_ISL_138739|PB1|E1|WHO Chinese National Influenza Center +>EPI439508|A/Anhui/1/2013|EPI_ISL_138739|PB1|E1|WHO-Chinese-National-Influenza-Center atggatgtcaatccgactttacttttcttgaaagtgccagtgcaaaatgctataagtaccactttcccttatactggaga ccctccatacagccatggaacaggaacaggatacaccatggacacagtcaacagaacacataaatactcagaaaaaggaa agtggacaacgaacacagagactggagcaccccaactcaatccaattgatggaccattacctgaggacaacgagccgagt diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa index 4d773fc8..37931b9a 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/3.fa @@ -1,4 +1,4 @@ ->EPI439503|A/Anhui/1/2013|EPI_ISL_138739|PA|E1|WHO Chinese National Influenza Center +>EPI439503|A/Anhui/1/2013|EPI_ISL_138739|PA|E1|WHO-Chinese-National-Influenza-Center atggaagactttgtgcgacagtgcttcaatccaatgatcgtcgagcttgcggaaaaggcaatgaaagaatatggggaaga tccgaaaatcgaaacaaacaaattcgcatcaatatgcacacacttagaagtctgcttcatgtactctgatttccacttca tcgacgaacgaggagaatcaactataatagaatctggcgatccaaatgcgctgctgaaacaccgatttgaaataatcgaa diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa index 43355a3a..65a658b0 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/4.fa @@ -1,4 +1,4 @@ ->EPI439507|A/Anhui/1/2013|EPI_ISL_138739|HA|E1|WHO Chinese National Influenza Center +>EPI439507|A/Anhui/1/2013|EPI_ISL_138739|HA|E1|WHO-Chinese-National-Influenza-Center atgaacactcaaatcctggtattcgctctgattgcgatcattccaacaaatgcagacaaaatctgcctcggacatcatgc cgtgtcaaacggaaccaaagtaaacacattaactgaaagaggagtggaagtcgtcaatgcaactgaaacagtggaacgaa caaacatccccaggatctgctcaaaagggaaaaggacagttgacctcggtcaatgtggactcctggggacaatcactgga diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa index 6e80ab70..f450b750 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/5.fa @@ -1,4 +1,4 @@ ->EPI439505|A/Anhui/1/2013|EPI_ISL_138739|NP|E1|WHO Chinese National Influenza Center +>EPI439505|A/Anhui/1/2013|EPI_ISL_138739|NP|E1|WHO-Chinese-National-Influenza-Center atggcgtctcaaggcaccaaacgatcctatgaacagatggaaactggtggggaacgccagaatgctactgagatcagggc atctgttggaagaatggttagcggcattgggagattctacatacagatgtgtacagaactcaaactcagtgacaatgaag ggaggctgattcagaacagtataacaatagagagaatggtactctctgcatttgatgaaagaaggaacagatacctggaa diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa index 78d20c2b..d9359ef8 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/6.fa @@ -1,4 +1,4 @@ ->EPI439509|A/Anhui/1/2013|EPI_ISL_138739|NA|E1|WHO Chinese National Influenza Center +>EPI439509|A/Anhui/1/2013|EPI_ISL_138739|NA|E1|WHO-Chinese-National-Influenza-Center atgaatccaaatcagaagattctatgcacttcagccactgctatcataataggcgcaatcgcagtactcattggaatagc aaacctaggattgaacataggactgcatctaaaaccgggctgcaattgctcacactcacaacctgaaacaaccaacacaa gccaaacaataataaacaactattataatgaaacaaacatcaccaacatccaaatggaagagagaacaagcaggaatttc diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa index 2514c793..351add1b 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/7.fa @@ -1,4 +1,4 @@ ->EPI439506|A/Anhui/1/2013|EPI_ISL_138739|MP|E1|WHO Chinese National Influenza Center +>EPI439506|A/Anhui/1/2013|EPI_ISL_138739|MP|E1|WHO-Chinese-National-Influenza-Center atgagtcttctaaccgaggtcgaaacgtacgttctctctatcattccatcaggccccctcaaagccgagatcgcacagag acttgaggatgtttttgcagggaagaacgcagatctcgaggctctcatggagtggataaagacaagaccaatcctgtcac ctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacggtttgtc diff --git a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/8.fa b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/8.fa index 5546f95e..7eda7958 100644 --- a/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/8.fa +++ b/static_data/flu/mut_references/H7NX/A-Anhui-1-2013/8.fa @@ -1,4 +1,4 @@ ->EPI439510|A/Anhui/1/2013|EPI_ISL_138739|NS|E1|WHO Chinese National Influenza Center +>EPI439510|A/Anhui/1/2013|EPI_ISL_138739|NS|E1|WHO-Chinese-National-Influenza-Center atggattccaatactgtgtcaagcttccaggtagactgctttctttggcatgtccgcaaacgatttgcagaccaagaaat gggtgatgccccatttctagaccggcttcgccgagatcagaagtccctgagaggaagaagcagcactcttggtctggaca tcagaactgccacgcgtgaaggaaagcatatagtggagcggattttagaggaagagtcagatgaagcatttaaaatgagt diff --git a/static_data/flu/proteins_processed.json b/static_data/flu/proteins_processed.json index 4c3505b8..0867f2ce 100644 --- a/static_data/flu/proteins_processed.json +++ b/static_data/flu/proteins_processed.json @@ -7381,14 +7381,14 @@ "row": 10 } ], - "A-Hong-Kong-1073-99": [ + "A-Anhui-1-2013": [ { "name": "PB2", "segment": "1", "segments": [ [ - 28, - 2307 + 1, + 2280 ] ], "protein_coding": true, @@ -7402,8 +7402,8 @@ 760 ], "nt_range": [ - 28, - 2307 + 1, + 2280 ], "aa_ranges": [ [ @@ -7424,34 +7424,34 @@ "segment": "2", "segments": [ [ - 24, - 2300 + 1, + 2274 ] ], "protein_coding": true, "residue_offset": 0, "domains": [], "notes": "", - "len_nt": 2277, - "len_aa": 759, + "len_nt": 2274, + "len_aa": 758, "residue_offset_range": [ 1, - 759 + 758 ], "nt_range": [ - 24, - 2300 + 1, + 2274 ], "aa_ranges": [ [ 1, - 759 + 758 ] ], "nt_ranges": [ [ 1, - 2277 + 2274 ] ], "row": 1 @@ -7461,8 +7461,8 @@ "segment": "2", "segments": [ [ - 118, - 390 + 95, + 367 ] ], "protein_coding": true, @@ -7476,8 +7476,8 @@ 91 ], "nt_range": [ - 118, - 390 + 95, + 367 ], "aa_ranges": [ [ @@ -7498,8 +7498,8 @@ "segment": "3", "segments": [ [ - 21, - 2171 + 1, + 2151 ] ], "protein_coding": true, @@ -7513,8 +7513,8 @@ 717 ], "nt_range": [ - 21, - 2171 + 1, + 2151 ], "aa_ranges": [ [ @@ -7530,13 +7530,62 @@ ], "row": 3 }, + { + "name": "PA-X", + "segment": "3", + "segments": [ + [ + 1, + 570 + ], + [ + 572, + 760 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 759, + "len_aa": 253, + "residue_offset_range": [ + 1, + 253 + ], + "nt_range": [ + 1, + 760 + ], + "aa_ranges": [ + [ + 1, + 190 + ], + [ + 191, + 253 + ] + ], + "nt_ranges": [ + [ + 1, + 570 + ], + [ + 571, + 759 + ] + ], + "row": 4 + }, { "name": "HA", "segment": "4", "segments": [ [ 1, - 1714 + 1683 ] ], "protein_coding": true, @@ -7563,14 +7612,14 @@ "ranges": [ [ 1, - 320 + 321 ] ], "row": 1, "nt_ranges": [ [ 55, - 1014 + 1017 ] ] }, @@ -7578,51 +7627,51 @@ "name": "HA2", "ranges": [ [ - 321, + 322, 542 ] ], "row": 0, "nt_ranges": [ [ - 1015, + 1018, 1680 ] ] } ], "notes": "", - "len_nt": 1714, - "len_aa": 571, + "len_nt": 1683, + "len_aa": 561, "residue_offset_range": [ -17, - 553 + 543 ], "nt_range": [ 1, - 1714 + 1683 ], "aa_ranges": [ [ 1, - 571 + 561 ] ], "nt_ranges": [ [ 1, - 1713 + 1683 ] ], - "row": 4 + "row": 5 }, { "name": "NP", "segment": "5", "segments": [ [ - 40, - 1536 + 1, + 1497 ] ], "protein_coding": true, @@ -7636,8 +7685,8 @@ 499 ], "nt_range": [ - 40, - 1536 + 1, + 1497 ], "aa_ranges": [ [ @@ -7651,7 +7700,7 @@ 1497 ] ], - "row": 5 + "row": 6 }, { "name": "NA", @@ -7659,44 +7708,44 @@ "segments": [ [ 1, - 1404 + 1398 ] ], "protein_coding": true, "residue_offset": 0, "domains": [], "notes": "", - "len_nt": 1404, - "len_aa": 468, + "len_nt": 1398, + "len_aa": 466, "residue_offset_range": [ 1, - 468 + 466 ], "nt_range": [ 1, - 1404 + 1398 ], "aa_ranges": [ [ 1, - 468 + 466 ] ], "nt_ranges": [ [ 1, - 1404 + 1398 ] ], - "row": 6 + "row": 7 }, { "name": "M1", "segment": "7", "segments": [ [ - 33, - 791 + 1, + 759 ] ], "protein_coding": true, @@ -7710,8 +7759,8 @@ 253 ], "nt_range": [ - 33, - 791 + 1, + 759 ], "aa_ranges": [ [ @@ -7725,19 +7774,19 @@ 759 ] ], - "row": 7 + "row": 8 }, { "name": "M2", "segment": "7", "segments": [ [ - 33, - 59 + 1, + 26 ], [ - 748, - 1014 + 715, + 982 ] ], "protein_coding": true, @@ -7751,27 +7800,27 @@ 98 ], "nt_range": [ - 33, - 1014 + 1, + 982 ], "aa_ranges": [ [ 1, - 9 + 8 ], [ - 10, - 98 + 9, + 97 ] ], "nt_ranges": [ [ 1, - 27 + 24 ], [ - 28, - 294 + 25, + 291 ] ], "row": 2 @@ -7781,12 +7830,12 @@ "segment": "8", "segments": [ [ - 27, - 56 + 1, + 30 ], [ - 529, - 864 + 503, + 838 ] ], "protein_coding": true, @@ -7800,8 +7849,8 @@ 122 ], "nt_range": [ - 27, - 864 + 1, + 838 ], "aa_ranges": [ [ @@ -7823,41 +7872,1487 @@ 366 ] ], - "row": 8 + "row": 9 }, { "name": "NS1", "segment": "8", "segments": [ [ - 27, - 719 + 1, + 654 ] ], "protein_coding": true, "residue_offset": 0, "domains": [], "notes": "", - "len_nt": 693, - "len_aa": 231, + "len_nt": 654, + "len_aa": 218, "residue_offset_range": [ 1, - 231 + 218 ], "nt_range": [ - 27, - 719 + 1, + 654 ], "aa_ranges": [ [ 1, - 231 + 218 ] ], "nt_ranges": [ [ 1, - 693 + 654 + ] + ], + "row": 10 + } + ], + "A-Hong-Kong-1073-99": [ + { + "name": "PB2", + "segment": "1", + "segments": [ + [ + 28, + 2307 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2280, + "len_aa": 760, + "residue_offset_range": [ + 1, + 760 + ], + "nt_range": [ + 28, + 2307 + ], + "aa_ranges": [ + [ + 1, + 760 + ] + ], + "nt_ranges": [ + [ + 1, + 2280 + ] + ], + "row": 0 + }, + { + "name": "PB1", + "segment": "2", + "segments": [ + [ + 24, + 2300 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2277, + "len_aa": 759, + "residue_offset_range": [ + 1, + 759 + ], + "nt_range": [ + 24, + 2300 + ], + "aa_ranges": [ + [ + 1, + 759 + ] + ], + "nt_ranges": [ + [ + 1, + 2277 + ] + ], + "row": 1 + }, + { + "name": "PB1-F2", + "segment": "2", + "segments": [ + [ + 118, + 390 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 273, + "len_aa": 91, + "residue_offset_range": [ + 1, + 91 + ], + "nt_range": [ + 118, + 390 + ], + "aa_ranges": [ + [ + 1, + 91 + ] + ], + "nt_ranges": [ + [ + 1, + 273 + ] + ], + "row": 2 + }, + { + "name": "PA", + "segment": "3", + "segments": [ + [ + 21, + 2171 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2151, + "len_aa": 717, + "residue_offset_range": [ + 1, + 717 + ], + "nt_range": [ + 21, + 2171 + ], + "aa_ranges": [ + [ + 1, + 717 + ] + ], + "nt_ranges": [ + [ + 1, + 2151 + ] + ], + "row": 3 + }, + { + "name": "HA", + "segment": "4", + "segments": [ + [ + 1, + 1714 + ] + ], + "protein_coding": true, + "residue_offset": 18, + "domains": [ + { + "name": "signal peptide", + "ranges": [ + [ + -17, + 0 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1, + 54 + ] + ] + }, + { + "name": "HA1", + "ranges": [ + [ + 1, + 320 + ] + ], + "row": 1, + "nt_ranges": [ + [ + 55, + 1014 + ] + ] + }, + { + "name": "HA2", + "ranges": [ + [ + 321, + 542 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1015, + 1680 + ] + ] + } + ], + "notes": "", + "len_nt": 1714, + "len_aa": 571, + "residue_offset_range": [ + -17, + 553 + ], + "nt_range": [ + 1, + 1714 + ], + "aa_ranges": [ + [ + 1, + 571 + ] + ], + "nt_ranges": [ + [ + 1, + 1713 + ] + ], + "row": 4 + }, + { + "name": "NP", + "segment": "5", + "segments": [ + [ + 40, + 1536 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1497, + "len_aa": 499, + "residue_offset_range": [ + 1, + 499 + ], + "nt_range": [ + 40, + 1536 + ], + "aa_ranges": [ + [ + 1, + 499 + ] + ], + "nt_ranges": [ + [ + 1, + 1497 + ] + ], + "row": 5 + }, + { + "name": "NA", + "segment": "6", + "segments": [ + [ + 1, + 1404 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1404, + "len_aa": 468, + "residue_offset_range": [ + 1, + 468 + ], + "nt_range": [ + 1, + 1404 + ], + "aa_ranges": [ + [ + 1, + 468 + ] + ], + "nt_ranges": [ + [ + 1, + 1404 + ] + ], + "row": 6 + }, + { + "name": "M1", + "segment": "7", + "segments": [ + [ + 33, + 791 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 759, + "len_aa": 253, + "residue_offset_range": [ + 1, + 253 + ], + "nt_range": [ + 33, + 791 + ], + "aa_ranges": [ + [ + 1, + 253 + ] + ], + "nt_ranges": [ + [ + 1, + 759 + ] + ], + "row": 7 + }, + { + "name": "M2", + "segment": "7", + "segments": [ + [ + 33, + 59 + ], + [ + 748, + 1014 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 294, + "len_aa": 98, + "residue_offset_range": [ + 1, + 98 + ], + "nt_range": [ + 33, + 1014 + ], + "aa_ranges": [ + [ + 1, + 9 + ], + [ + 10, + 98 + ] + ], + "nt_ranges": [ + [ + 1, + 27 + ], + [ + 28, + 294 + ] + ], + "row": 2 + }, + { + "name": "NEP", + "segment": "8", + "segments": [ + [ + 27, + 56 + ], + [ + 529, + 864 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 366, + "len_aa": 122, + "residue_offset_range": [ + 1, + 122 + ], + "nt_range": [ + 27, + 864 + ], + "aa_ranges": [ + [ + 1, + 10 + ], + [ + 11, + 122 + ] + ], + "nt_ranges": [ + [ + 1, + 30 + ], + [ + 31, + 366 + ] + ], + "row": 8 + }, + { + "name": "NS1", + "segment": "8", + "segments": [ + [ + 27, + 719 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 693, + "len_aa": 231, + "residue_offset_range": [ + 1, + 231 + ], + "nt_range": [ + 27, + 719 + ], + "aa_ranges": [ + [ + 1, + 231 + ] + ], + "nt_ranges": [ + [ + 1, + 693 + ] + ], + "row": 9 + } + ], + "A-Jiangsu-428-2021": [ + { + "name": "PB2", + "segment": "1", + "segments": [ + [ + 28, + 2307 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2280, + "len_aa": 760, + "residue_offset_range": [ + 1, + 760 + ], + "nt_range": [ + 28, + 2307 + ], + "aa_ranges": [ + [ + 1, + 760 + ] + ], + "nt_ranges": [ + [ + 1, + 2280 + ] + ], + "row": 0 + }, + { + "name": "PB1", + "segment": "2", + "segments": [ + [ + 25, + 2298 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2274, + "len_aa": 758, + "residue_offset_range": [ + 1, + 758 + ], + "nt_range": [ + 25, + 2298 + ], + "aa_ranges": [ + [ + 1, + 758 + ] + ], + "nt_ranges": [ + [ + 1, + 2274 + ] + ], + "row": 1 + }, + { + "name": "PB1-F2", + "segment": "2", + "segments": [ + [ + 119, + 391 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 273, + "len_aa": 91, + "residue_offset_range": [ + 1, + 91 + ], + "nt_range": [ + 119, + 391 + ], + "aa_ranges": [ + [ + 1, + 91 + ] + ], + "nt_ranges": [ + [ + 1, + 273 + ] + ], + "row": 2 + }, + { + "name": "PA", + "segment": "3", + "segments": [ + [ + 25, + 2175 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2151, + "len_aa": 717, + "residue_offset_range": [ + 1, + 717 + ], + "nt_range": [ + 25, + 2175 + ], + "aa_ranges": [ + [ + 1, + 717 + ] + ], + "nt_ranges": [ + [ + 1, + 2151 + ] + ], + "row": 3 + }, + { + "name": "HA", + "segment": "4", + "segments": [ + [ + 20, + 1705 + ] + ], + "protein_coding": true, + "residue_offset": 16, + "domains": [ + { + "name": "signal peptide", + "ranges": [ + [ + -15, + 0 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 20, + 67 + ] + ] + }, + { + "name": "HA1", + "ranges": [ + [ + 1, + 324 + ] + ], + "row": 1, + "nt_ranges": [ + [ + 68, + 1039 + ] + ] + }, + { + "name": "HA2", + "ranges": [ + [ + 325, + 545 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1040, + 1702 + ] + ] + } + ], + "notes": "", + "len_nt": 1686, + "len_aa": 562, + "residue_offset_range": [ + -15, + 546 + ], + "nt_range": [ + 20, + 1705 + ], + "aa_ranges": [ + [ + 1, + 562 + ] + ], + "nt_ranges": [ + [ + 1, + 1686 + ] + ], + "row": 4 + }, + { + "name": "NP", + "segment": "5", + "segments": [ + [ + 46, + 1542 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1497, + "len_aa": 499, + "residue_offset_range": [ + 1, + 499 + ], + "nt_range": [ + 46, + 1542 + ], + "aa_ranges": [ + [ + 1, + 499 + ] + ], + "nt_ranges": [ + [ + 1, + 1497 + ] + ], + "row": 5 + }, + { + "name": "NA", + "segment": "6", + "segments": [ + [ + 19, + 1428 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1410, + "len_aa": 470, + "residue_offset_range": [ + 1, + 470 + ], + "nt_range": [ + 19, + 1428 + ], + "aa_ranges": [ + [ + 1, + 470 + ] + ], + "nt_ranges": [ + [ + 1, + 1410 + ] + ], + "row": 6 + }, + { + "name": "M1", + "segment": "7", + "segments": [ + [ + 26, + 784 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 759, + "len_aa": 253, + "residue_offset_range": [ + 1, + 253 + ], + "nt_range": [ + 26, + 784 + ], + "aa_ranges": [ + [ + 1, + 253 + ] + ], + "nt_ranges": [ + [ + 1, + 759 + ] + ], + "row": 7 + }, + { + "name": "M2", + "segment": "7", + "segments": [ + [ + 26, + 52 + ], + [ + 741, + 1007 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 294, + "len_aa": 98, + "residue_offset_range": [ + 1, + 98 + ], + "nt_range": [ + 26, + 1007 + ], + "aa_ranges": [ + [ + 1, + 9 + ], + [ + 10, + 98 + ] + ], + "nt_ranges": [ + [ + 1, + 27 + ], + [ + 28, + 294 + ] + ], + "row": 2 + }, + { + "name": "NS1", + "segment": "8", + "segments": [ + [ + 27, + 680 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 654, + "len_aa": 218, + "residue_offset_range": [ + 1, + 218 + ], + "nt_range": [ + 27, + 680 + ], + "aa_ranges": [ + [ + 1, + 218 + ] + ], + "nt_ranges": [ + [ + 1, + 654 + ] + ], + "row": 8 + }, + { + "name": "NEP", + "segment": "8", + "segments": [ + [ + 27, + 56 + ], + [ + 529, + 864 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 366, + "len_aa": 122, + "residue_offset_range": [ + 1, + 122 + ], + "nt_range": [ + 27, + 864 + ], + "aa_ranges": [ + [ + 1, + 10 + ], + [ + 11, + 122 + ] + ], + "nt_ranges": [ + [ + 1, + 30 + ], + [ + 31, + 366 + ] + ], + "row": 9 + } + ], + "A-Jiangxi-Donghu-346-2013": [ + { + "name": "PB2", + "segment": "1", + "segments": [ + [ + 1, + 2280 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2280, + "len_aa": 760, + "residue_offset_range": [ + 1, + 760 + ], + "nt_range": [ + 1, + 2280 + ], + "aa_ranges": [ + [ + 1, + 760 + ] + ], + "nt_ranges": [ + [ + 1, + 2280 + ] + ], + "row": 0 + }, + { + "name": "PB1", + "segment": "2", + "segments": [ + [ + 1, + 2274 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2274, + "len_aa": 758, + "residue_offset_range": [ + 1, + 758 + ], + "nt_range": [ + 1, + 2274 + ], + "aa_ranges": [ + [ + 1, + 758 + ] + ], + "nt_ranges": [ + [ + 1, + 2274 + ] + ], + "row": 1 + }, + { + "name": "PB1-F2", + "segment": "2", + "segments": [ + [ + 95, + 367 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 273, + "len_aa": 91, + "residue_offset_range": [ + 1, + 91 + ], + "nt_range": [ + 95, + 367 + ], + "aa_ranges": [ + [ + 1, + 91 + ] + ], + "nt_ranges": [ + [ + 1, + 273 + ] + ], + "row": 2 + }, + { + "name": "PA", + "segment": "3", + "segments": [ + [ + 1, + 2151 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 2151, + "len_aa": 717, + "residue_offset_range": [ + 1, + 717 + ], + "nt_range": [ + 1, + 2151 + ], + "aa_ranges": [ + [ + 1, + 717 + ] + ], + "nt_ranges": [ + [ + 1, + 2151 + ] + ], + "row": 3 + }, + { + "name": "HA", + "segment": "4", + "segments": [ + [ + 1, + 1686 + ] + ], + "protein_coding": true, + "residue_offset": 16, + "domains": [ + { + "name": "signal peptide", + "ranges": [ + [ + -15, + 0 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1, + 48 + ] + ] + }, + { + "name": "HA1", + "ranges": [ + [ + 1, + 324 + ] + ], + "row": 1, + "nt_ranges": [ + [ + 49, + 1020 + ] + ] + }, + { + "name": "HA2", + "ranges": [ + [ + 325, + 545 + ] + ], + "row": 0, + "nt_ranges": [ + [ + 1021, + 1683 + ] + ] + } + ], + "notes": "", + "len_nt": 1686, + "len_aa": 562, + "residue_offset_range": [ + -15, + 546 + ], + "nt_range": [ + 1, + 1686 + ], + "aa_ranges": [ + [ + 1, + 562 + ] + ], + "nt_ranges": [ + [ + 1, + 1686 + ] + ], + "row": 4 + }, + { + "name": "NP", + "segment": "5", + "segments": [ + [ + 1, + 1497 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1497, + "len_aa": 499, + "residue_offset_range": [ + 1, + 499 + ], + "nt_range": [ + 1, + 1497 + ], + "aa_ranges": [ + [ + 1, + 499 + ] + ], + "nt_ranges": [ + [ + 1, + 1497 + ] + ], + "row": 5 + }, + { + "name": "NA", + "segment": "6", + "segments": [ + [ + 1, + 1413 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 1413, + "len_aa": 471, + "residue_offset_range": [ + 1, + 471 + ], + "nt_range": [ + 1, + 1413 + ], + "aa_ranges": [ + [ + 1, + 471 + ] + ], + "nt_ranges": [ + [ + 1, + 1413 + ] + ], + "row": 6 + }, + { + "name": "M1", + "segment": "7", + "segments": [ + [ + 1, + 759 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 759, + "len_aa": 253, + "residue_offset_range": [ + 1, + 253 + ], + "nt_range": [ + 1, + 759 + ], + "aa_ranges": [ + [ + 1, + 253 + ] + ], + "nt_ranges": [ + [ + 1, + 759 + ] + ], + "row": 7 + }, + { + "name": "M2", + "segment": "7", + "segments": [ + [ + 1, + 27 + ], + [ + 716, + 982 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 294, + "len_aa": 98, + "residue_offset_range": [ + 1, + 98 + ], + "nt_range": [ + 1, + 982 + ], + "aa_ranges": [ + [ + 1, + 9 + ], + [ + 10, + 98 + ] + ], + "nt_ranges": [ + [ + 1, + 27 + ], + [ + 28, + 294 + ] + ], + "row": 2 + }, + { + "name": "NS1", + "segment": "8", + "segments": [ + [ + 1, + 654 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 654, + "len_aa": 218, + "residue_offset_range": [ + 1, + 218 + ], + "nt_range": [ + 1, + 654 + ], + "aa_ranges": [ + [ + 1, + 218 + ] + ], + "nt_ranges": [ + [ + 1, + 654 + ] + ], + "row": 8 + }, + { + "name": "NEP", + "segment": "8", + "segments": [ + [ + 1, + 30 + ], + [ + 503, + 838 + ] + ], + "protein_coding": true, + "residue_offset": 0, + "domains": [], + "notes": "", + "len_nt": 366, + "len_aa": 122, + "residue_offset_range": [ + 1, + 122 + ], + "nt_range": [ + 1, + 838 + ], + "aa_ranges": [ + [ + 1, + 10 + ], + [ + 11, + 122 + ] + ], + "nt_ranges": [ + [ + 1, + 30 + ], + [ + 31, + 366 ] ], "row": 9 diff --git a/static_data/flu/reference.json b/static_data/flu/reference.json index 11bed4f4..78a75cb1 100644 --- a/static_data/flu/reference.json +++ b/static_data/flu/reference.json @@ -218,6 +218,100 @@ }, "description": "B/Wisconsin/01/2010 EPI_ISL_76940 (2012-2013)" }, + "A-Jiangsu-428-2021": { + "name": "A-Jiangsu-428-2021", + "subtype": "H10NX", + "segments": { + "1": { + "name": "EPI1868397|A/Jiangsu/428/2021|EPI_ISL_2380100|PB2|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGTCAAATATATTCAATATGGAAAGAATAAAAGAACTAAGAGATTTGATGTCACAGTCTCGCACTCGCGAGATACTGACAAAAACAACTGTGGACCATATGGCCATAATTAAGAAATACACATCGGGAAGACAGGAGAAGAATCCTGCCCTTAGGATGAAGTGGATGATGGCAATGAAGTATCCAATTACAGCAGACAAAAGGATAATGGAGATGATCCCAGAAAGGAATGAGCACGGTCAAACCCTTTGGAGCAAGACAAATGATGCTGGATCAGACAGAGTGATGGTGTCACCTCTAGCTGTGACGTGGTGGAACAGAAATGGGCCAACAACAAGCACAGTCCATTATCCAAAGGTCTATAAAACCTATTTTGAAAAGGTCGAAAGACTAAAACACGGGACTTTCGGCCCCGTTCACTTCCGAAACCAGGTTAAAATACGACGCAGGGTCGACATAAACCCAGGCCATGCAGATCTTAGTGCTAAGGAAGCACAAGATGTCATCATGGAGGTCGTATTCCCAAACGAAGTTGGAGCCAGAATATTAACATCAGAGTCACAGTTAACTATAACCAAGGAAAAGAAGGAGGAGCTTCAAGACTGCAAAATTGCCCCATTAATGGTGGCTTACATGTTGGAGAGGGAACTGGTTCGAAAAACAAGATTTCTACCAGTAGCTGGAGGAACAAGCAGCGTGTATATCGAAGTATTACATTTGACCCAGGGGACCTGCTGGGAGCAAATGTACACACCAGGAGGAGAAGTGAGAAATGATGATGTTGATCAGAGTTTAATTATTGCAGCTAGAAATATTGTTAGAAGGGCAACAGTGTCAGCAGACCCGTTGGCTTCGCTTTTGGAGATGTGCCATAGTACACAGATTGGCGGGGTTAGGATGGTTGACATCCTTAGACAAAACCCAACAGAAGAACAGGCTGTAGATATATGTAAGGCAGCGATGGGCTTAAGGATCAGTTCATCCTTCAGCTTTGGAGGTTTCACTTTCAAAAGGACAAGTGGATCATCCGTTAAAAAGGAAGAAGAAGTGCTAACAGGCAACCTCCAAGCATTGAAAATAAGAGTACATGAGGGATATGAGGAATTTACCATGGTTGGGCGAAGAGCAACAGCCATTCTAAGGAAAGCAACCAGAAGACTGATCCAACTGATAGTGAGTGGGAAAGACGAACAATCAATTGCAGAGGCAATCATAGTGGCAATGGTATTCTCACAAGAAGATTGTATGATAAAGGCAGTGAGAGGTGATTTGAACTTTGTCAACAGAGCAAATCAGAGGCTAAACCCCATGCATCAACTCCTGAGGCATTTCCAAAAGGATGCAAAGATCCTTTTTCAAAACTGGGGAATTGAACCCATTGACAATGTAATGGGGATGATCGGAATATTGCCTGACATGACCCCCAGCACAGAGATGTCATTGAGAGGAGTGAGAGTTAGTAAAATGGGAGTAGATGAGTATTCCAGTACTGAGAGAGTGGTCGTGAGTATTGATCGTTTCTTAAGGGTCCGGGACCAGAGAGGAAACATACTCTTGTCTCCTGAAGAGGTTAGTGAAACACAGGGAACAGAAAAGCTGACTATAACATATTCATCATCCATGATGTGGGAGATCAATGGTCCGGAATCAGTGCTAGTTAACACATATCAATGGATCATCAGAAACTGGGAAACCGTGAAAATTCAATGGTCCCAAGATCCTACAATGCTATACAATAAGATGGAATTTGAACCCTTTCAATCCCTAGTGCCTAAAGCCGTCAGAGGCMAATATAGTGGGTTCGTAAGGATTCTATTCCAACAGATGCGTGATGTACTGGGGACATTTGACACTGTCCAAATAATAAAACTATTACCATTTGCAGCAGCCCCACCGGAGCAAAGTAGAATGCAGTTCTCTTCTCTAACTGTGAATGTGAGGGGTTCAGGAATGAGAATAGTTGTGAGAGGCAACTCTCCTGTGTTCAACTACAATAAGGCTACCAAAAGGCTCACTGTGCTTGGGAAGGATGCAGGTGCATTGGTGGAAGACCCAGATGAGGGAACAGCAGGAGTAGAATCTGCAGTATTGAGGGGATTTCTGATTCTTGGCAAGGAAGACAAGAGGTATGGGCCAGCATTGAGCATCAATGAATTGAGCAATCTTGCGAAAGGAGAGAAGGCTAATGTGTTGATAGGGCAAGGAGACGTGGTGTTGGTAATGAAACGGAAACGGGACTCTAGCATACTTACTGACAGTCAGACAGCGACCAAAAGGATTCGGATGGCCATCAATTAATGTCGAATTGTTTAAAAACGACCTTGTTTCTACT", + "description": "" + }, + "2": { + "name": "EPI1868396|A/Jiangsu/428/2021|EPI_ISL_2380100|PB1|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGCAAACCATTTGAATGGATGTCAATCCGACTTTACTTTTCTTGAAAGTGCCAGTGCAAAATGCTATAAGTACCACTTTCCCTTATACTGGAGACCCTCCATACAGCCATGGAACGGGAACAGGGTACACCATGGACACAGTCAACAGAACACATAAATACTCAGAAAAAGGAAAATGGACAACGAACACAGAGACTGGAGCACCCCAACTCAATCCAGTTGATGGACCATTACCTGAGGACAATGAGCCGAGTGGGTATGCACAAACGGATTGTGTATTGGAAGCGATGGCTTTCCTTGAGGAATCCCACCCAGGGATCTTTGAAAACTCGTGTCTCGAAACGATGGAAGTTGTTCAGCAAACAAGAGTGGATAAACTGACCCAAGGCCGTCAGACCTATGACTGGACGTTAAATAGAAATCAGCCGGCCGCTACCGCATTGGCCAACACTATAGAGGTATTCAGATCGAATGGCCTGACAGCCAATGAATCAGGGAGGTTGATCGATTTCCTCAAGGACGTGATGGATTCCATGGATAAGGAAGAAATGGAGATTACAACACATTTCCAGAGGAAGAGGAGAGTGAGGGACAACATGACCAAGAAAATGGTTACACAGAGAACAATAGGGAAGAAGAAACAAAGACTGAACAAAAAGAGCTACCTAATAAGAGCACTGACATTGAACACAATGACAAAGGATGCTGAAAGGGGCAAGTTGAAAAGGAGAGCAATTGCAACACCCGGGATGCAAATCAGAGGATTCGTGTATTTTGTAGAAGCACTAGCGAGGAGCATCTGTGAGAAACTTGAACAATCTGGCCTCCCTGTTGGGGGGAATGAGAAGAAGGCTAAACTGGCAAATGTTGTGAGGAAGATGATGACTAATTCACAAGATACAGAACTCTCCTTTACAATTACTGGGGACAACACCAAATGGAATGAGAATCAAAATCCCCGGGTGTTTCTAGCAATGATAACATACATCACAAGAAACCAACCAGAATGGTTTAGAAATGTCTTAAGTATTGCTCCTATAATGTTCTCAAACAAGATGGCGAGATTGGGAAAGGGGTATATGTTCGAAAGTAAAAGTATGAAGTTGCGAACACAAGTGCCAGCGGAAATACTTGCAAATATTGACCTGAAATACTTCAACCAATCGACGAGAGAGAGAATCGAGAAAATAAGACCTCTACTAATAGAGGGCACAGCCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAACATGCTGAGTACAGTCTTAGGAGTTTCAATTCTGAATCTAGGGCAGAAGAAGTACACCAAAACCACATATTGGTGGGACGGACTCCAATCCTCAGATGACTTCGCTCTCATAGTGAATGCACCGAATCATGAGGGAATACAAGCAGGAGTGGATAGGTTCTATAGAACCTGTAAGTTGGTTGGGATAAACATGAGCAAGAAGAAATCCTACATAAATCGGACAGGAACATTCGAATTCACAAGCTTTTTTTACCGCTATGGGTTCGTAGCTAACTTCAGTATGGAATTGCCCAGTTTTGGAGTGTCTGGGGTTAATGAATCGGCTGACATGAGCATTGGTGTTACAGTAATAAAAAACAATATGGTAAACAACGATCTTGGACCAGCAACAGCCCAGATGGCCCTTCAGCTATTTATCAAAGACTACAGATACACATACCGATGTCACAGGGGTGATACGCAAATTCAGACGAGGAGAGCATTCGAGCTGAAAAAGCTGTGGGAGCAGACTCGTTCAAAGGCAGGATTGTTGGTTTCAGATGGAGGGCCGAATCTGTACAATATCCGGAATCTCCACATTCCAGAGGTATGTTTGAAATGGGAATTGATGGATGAAGAATACCAAGGCAGGTTGTGTAATCCTATGAATCCGTTTGTCAGTCATAAGGAAATTGATTCAGTCAACAATGCTGTGGTGATGCCAGCCCATGGCCCGGCCAAAAGCATGGAGTATGATGCCGTTGCAACCACACATTCATGGATTCCTAAGAGGAATCGCTCCATTCTCAACACCAGTCAAAGAGGGATTCTTGAGGACGAACATATGTATCAGAAATGCTGCAACCTATTCGAAAAGTTCTTCCCCAGCAGTTCGTACAGGAGGCCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGAATTGATGCACGAATTGACTTCGAATCTGGAAGGATTAAGAAAGAAGAGTTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAAATAGTGAATTTAGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTACT", + "description": "" + }, + "3": { + "name": "EPI1868395|A/Jiangsu/428/2021|EPI_ISL_2380100|PA|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAGTATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTATTCTGATTTCCACTTCATTGACGAACGAGGCGAATCAACTATTATTGAATCTGGCGATCCAAATGTATTGTTGAAACATCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCATGGACAGTGGTGAATAGTATCTGCAACACCACCGGTGTCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACCAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCTAATAAAATAAAATCCGAGAAGACACACATCCACATTTTCTCATTCACTGGAGAAGAAATGGCCACCAAAGCAGATTACACTCTTGATGAGGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAGATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAGGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCGAAAGAAGTGAACGCCCGAATCGAGCCATTTCTAAAGACAACACCACGCCCGCTCAGATTGCCTAATGGGCCTCCCTGTTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTAAAGTTAAGCATTGAGGACCCAAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAGGGCATAAACCCCAACTATCTCCTTACTTGGAAGCAGGTGCTGTCAGAACTTCAAGACATTGAAAATGAAGAGAAGATCCCAAGGACAAAAAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTTGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGTAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAAGCATGTGAATTGACTGACTCAAGCTGGGTAGAGCTTGACGAAATAGGGGAAGATGTTGCCCCAATTGAACACATTGCAAGCATGAGAAGGAATTATTTTACAGCAGAGGTATCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGATTTTCAACTGATTCCAATGATAAGTAAATGCAGAACCAAAGAGGGAAGACGTAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCCCATTTGAGGAATGATACCGATGTGGTGAACTTTGTGAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACAAAAATGGGAAAAGTATTGTGTTCTTGAAGTAGGGGATATGCTCCTGCGAACGGCAATAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAAATCAAGATGAAATGGGGTATGGAAATGAGACGTTGCCTTCTCCAGTCTCTCCAACAGATCGAGAGTATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACTAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATTGGAAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCTTATATGCATCTCCGCAACTCGAGGGATTCTCAGCTGAATCAAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGATAGTTGTGGCAATGCTACTATTTGCTATCCATACTGTCCAAAAAAGTACCTTGTTTCTACT", + "description": "" + }, + "4": { + "name": "EPI1868394|A/Jiangsu/428/2021|EPI_ISL_2380100|HA|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGGGTCACAATGTACAAAATAGTAGTGATAATCGCGTTCCTTGGAACTGTGAAGGCTCTTGATAAGATCTGCCTGGGACATCATGCAGTGGCCAATGGGACCATTGTAAAGACTCTCACAAGTGAACAGGAAGAGGTGACAAATGCTACTGAGACAGTGGAGAGCAAAGGCCTAAACAAATTATGTATGAAGGGAAGGAACCATAAAGACCTGGGCAACTGCCATCCAATAGGAATGCTAATAGGAACACCAGCTTGTGACCTGCACCTTACAGGGACATGGGACACTCTCATTGAGCGAGAAAATGCTATTGCTTATTGCTACCCTGGAGCTACTATAAATGAAGAAGCACTGAGGCAGAAAATAATGGAAAGTGGGGGAATCAGCAAAATAAGCACCGGATTTACTTATGGATCTTCCATAAATTCAGCCGGGACCACTAAAGCATGCATGAGAAATGGAGAAAATAGCTTTTATGCAGAGCTTAAGTGGCTAGTATCAAAGAACAAGGGACAAAATTTCCCTCAGACCACGAACACTTACAGAAACACAGACACGGCTGAACATCTCATAATGTGGGGAATTCATCACCCCTCTAGCACTCAAGAGAAGAATGACTTGTATGGGACACAATCACTGTCCATATCAGTCGGAAGTTCCACTTACTACAGCAATTTTGTACCAGTTGTTGGAGCAAGACCCCGGGTCAATGGACAGAGTAGCAKAATCGATTTTCACTGGACATTGGTACAGCCAGGTGATAATATCACCTTCTCACACAATGGGGGCCTGATAGCACCGAGCCGAGTTAGCAAATTAATTGGGAGAGGCTTGGGGATTCAATCTGATGCACCAATAGACAATAATTGTGAATCCAAATGTTTTTGGAGAGAAGGTTCCATAAACACAAGGCTTCCCTTTCAGAATTTGTCACCAAGAACAGTTGGCCAATGTCCTAAATATGTGAACAAAAAGAGCTTGATGCTTGCAACAGGGATGAGAAACGTGCCAGAGATAATACAGGGGAGAGGTCTATTAGGTGCAATAGCGGGGTTTATAGAGAATGGATGGGAAGGAATGGTAGATGGCTGGTATGGTTTCAGACACCAAAATGCTCAGGGCACAGGCCAAGCCGCTGATTACAAGAGTACTCAGGCAGCTATTGACCAAATCACTGGGAAACTGAATAGACTTATTGAAAAGACCAATACTGAGTTCGAGTCAATAGAATCTGAGTTCAGTGAAATTGAACACCAGATCGGTAACGTCATCAATTGGACTAAGGACTCAATAACCGACATTTGGACTTATCAAGCTGAGCTATTGGTAGCAATGGAGAACCAGCACACAATCGATATGGCTGATTCAGAAATGTTGAATCTATATGAAAGAGTGAGAAAACAACTCAGGCAAAATGCAGAAGAAGATGGGAAAGGGTGTTTCGAAATATATCACACTTGTGATGATTCATGCATGGAGAGCATAAGAAACAACACATACGACCATTCACAGTACAGAGAAGAAGCTATTTTAAAAAGACTGAATATCAACCCAGTGACACTCTCTTCTGGCTATAAAGACATCATTCTCTGGTTTAGCTTCGGGGCATCATGTTTTGTTCTTTTAGCCGTTGTCGTGGGTCTTGTCTTCTTTTGTTTGAAAAATGGAAACATGCGATGCACAATCTGTATTTAGTTAAAAACACCCTTGTTTCTACT", + "description": "" + }, + "5": { + "name": "EPI1868393|A/Jiangsu/428/2021|EPI_ISL_2380100|NP|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGGTAGATAATCACTCACTGAGTGACATCAACATCATGGCGTCTCAAGGCACCAAACGATCCTATGAACAGATGGAGACTGGTGGAGAACGCCAGAATGCTACTGAGATCAGGGCATCTGTCGGAAGAATGGTTAGCGGCATTGGGAGATTCTACATACAAATGTGTACAGAACTCAAACTCAGTGACAATGAAGGGAGGCTGATCCAGAACAGTATAACAATAGAGAGAATGGTACTCTCAGCATTTGATGAAAGAAGGAACCGATACCTGGAAGAGCACCCCAGTGCAGGAAAGGACCCGAAGAAAACTGGAGGCCCAATTTACCGAAGAAGAGACGGGAAATGGGTGAGAGAGCTGATCCTGTATGACAAGGAGGAAATCAGGAGAATTTGGCGTCAAGCGAACAATGGAGAAGACGCAACTGCTGGTCTTACCCATCTGATGATATGGCATTCCAATCTAAATGATGCCACATATCAGAGAACGAGAGCTCTCGTACGTACTGGAATGGACCCCAGAATGTGCTCTCTGATGCAAGGATCAACTCTCCCGAGGAGATCTGGAGCTGCGGGCGCAGCAGTAAAGGGGATAGGAACAATGGTGATGGAGCTGATTCGGATGATAAAACGAGGGATAAACGACCGTAATTTCTGGAGAGGCGAAAATGGAAGAAGAACAAGAGTTGCATACGAGAGGATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGAGCAATGATGGATCAAGTGCGAGAGAGCAGAAATCCTGGAAATGCTGAAATAGAAGATCTCATTTTTCTGGCAAGGTCTGCACTCATCCTGAGAGGATCTGTGGCTCATAAGTCCTGCTTGCCTGCTTGTGTATACGGACTTGCAGTGGCCAGTGGATATGACTTTGAGAGAGAAGGATACTCCCTGGTTGGAATAGATCCTTTCCGTCTACTTCAGAACAGCCAGGTTTTTAGTCTTATAAGACCAAATGAGAATCCAGCACATAAGAGTCAACTAGTTTGGATGGCATGCCACTCTGCAGCATTTGAGGACCTTAGAGTCTCAAGCTTCATCAAAGGGACAAGAATGGTCCCAAGAGGACAATTATCCACCAGAGGGGTTCAAATTGCTTCAAATGAGAACATGGAAACAATGGACTCCAACACTCTAGAACTGAGAAGTAGATATTGGGCTATAAGAACCAGAAGCGGAGGGAACACCAACCAACAGAGGGCATCTGCGGGACAGATTAGCGTTCAACCCACTTTCTCGGTACAGAGAAACCTCCCTTTCGAAAGAGCGACCATTATGGCAGCTTTTACAGGAAATACTGAGGGTAGAACGTCTGACATGAGAACTGAAATCATAAGAATGATGGAAAGTGCAAAACCAGAAGATGTGTCATTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGGTCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAATTAAAGAAAAATACCCTTGTTTCTACT", + "description": "" + }, + "6": { + "name": "EPI1868392|A/Jiangsu/428/2021|EPI_ISL_2380100|NA|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGTGCGAAATGAATCCAAATCAGAAGATAATAACACTCGGTGTAGTGAACACAACTCTGTCAACATTAGCCCTCCTCATTGGAATTGGGAATCAGATTTTCAACATTGTTATACATGAGAAAGTAGGAGTACATCAAACTGTGGTATGCCCAACAACAACACCCACAGTGGTACCAAACTGCAGTGAAACCACAATTACATACAACAACACTGTGGTAAACAACATAACAACAACAATAGTAAATAAAGCGGAAAAGCAGTTCAAGTCCTCACTGCCACTGTGTCCCTTCCGAGGCTTCTTCCCCTTCCATAAGGACAATGCAATACGATTGGGTGAAAACAAAGGTGTAATAGTCACAAGGGAGCCCTATGTCAGTTGTGACAATGATGATTGCTGGTCCTTCGCCCTTGCCCAAGGGGCTCTGCTAGGAACTAAACACAGCAATGGAACCATAAAAGATAGAACACCGTATAGATCATTGATTCGATTCCCGATAGGGACAGCTCCAGTGCTGGGTAATTACAAGGAAATATGTGTTGCTTGGTCAAGTAGCAGTTGTTTCGATGGAAAGGAATGGATGCATGTCTGCATGACTGGAAATGACAATGATGCGAGTGGCCAAATAATATATGCAGGAAAGATGACAGACTCCATCAAATCATGGAGAAGAGACATATTAAGAACTCAGGAGTCTGAATGTCAATGCATTGATGGGACCTGTATTGTCGCCATCACAGATGGCCCTGCGGCTAGTAGTGCAGACCACAGAATTTACTGGATAATAGAAGGGAAGATAATAAAGTATGAAAACATTCCCAAAACAAAGATACAACACTTAGAGGAGTGTTCTTGCTATGTGGACACCGATGTGTACTGCATATGTAGGGATAATTGGAAAGGTTCTAACAGGCCCTGGGTGAGGATCAACAATGAGACCATACTAGAAACAGGGTATGTATGCAGCAAATTTCATTCAGACACCCCCAGGCCAGCCGATCCCTCAACAGTGTCATGTGATTCCCCAAGTGATATAAATGGAGGACTTGGAGTCAAGGGATTTGGCTTCAAAGCGGGTAATGATGTATGGCTGGGAAGGACAGTATCTATTACTGGAAGATCAGGCTTTGAAGTCATCAAGGTCACAGAAGGATGGATCAATTCCCTCAATCATACTAAATCAGTTACACAGACACTAGTACCGAACAGCGATTGGTCAGGTTACTCAGGGAGTTTCATTGTCGAGAACAACGGCTGTTTCCAGCCTTGCTTCTATATAGAACTCATACGAGGAAGGCCCAATAGAGGCGATGACGTTTCCTGGACAAGCAATAGTATAGTTACTTTCTGTGGACTAGACAATGAACCTGGATCGGGAAATTGGCCTGATGGTTCCAACATTGGGTTCATGCCCAAGTAACAGAAAAAGCACCTTGTTTCTACT", + "description": "" + }, + "7": { + "name": "EPI1868391|A/Jiangsu/428/2021|EPI_ISL_2380100|MP|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGTAGATGTTTAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATTCCATCAGGCCCCCTCAAAGCCGAGATCGCGCAAAGACTTGAGGATGTTTTTGCAGGGAAGAACGCAGATCTCGAGGCTCTCATGGAGTGGATAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTAGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGGTTTGTCCAAAACGCCCTAAATGGGAATGGAGACCCAAACAACATGGACAAGGCAGTTAAATTGTACAAGAAACTGAAGAGGGAAATGACATTTCATGGAGCAAAGGAAGTTGCACTCAGTTACTCAACTGGTGCGCTTGCCAGCTGCATGGGTCTCATATACAACAGGATGGGGACAGTAACTGCAGAAGGGGCTCTTGGATTGGTATGTGCCACCTGTGAGCAGATTGCCGACGCACAACATCGGTCCCACAGACAGATGGCAACTACTACCAATCCACTAATTAGACATGAGAATAGAATGGTACTAGCCAGTACTACGGCTAAGGCTATGGAGCAGATGGCTGGATCAAGTGAACAGGCAGCGGAAGCCATGGAAGTCGCAAGCCAGGCTAGGCAAATGGTGCAGGCTATGAGGACAGTCGGGACTCATCCTAACTCCAGTACAGGTCTTAAGGATGATCTTATTGAAAATTTGCAGGCCTACCAGAACCGGATGGGAGTGCAACTGCAGCGGTTCAAGTGACCCACTCGTTGTTGCAGCTAACATTATTGGGATATTGCACCTGATATTGTGGATTCTTGATCGTCTTTTCTTCAAATGCATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAATGCCTGAGTCTATGAGGGAAGAATATCGGCAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGAAGTAAAAAACTACCTTGTTTCTACT", + "description": "" + }, + "8": { + "name": "EPI1868390|A/Jiangsu/428/2021|EPI_ISL_2380100|NS|Original|WHO-Chinese-National-Influenza-Center", + "sequence": "AGCAAAAGCAGGGTGACAAAGACATAATGGATTCCAACACAGTATCAAGCTTCCAGGTAGACTGCTTTCTTTGGCATGTTCGCAAACGATTTGCAGACCAAGAAATGGGTGATGCCCCATTTCTAGACCGGCTTCGCCGAGATCAAAAGTCCCTGAGGGGAAGAAGCAGCACTCTTGGTCTAGACATCAGAACTGCAACACGTGAAGGAAAGCATATAGTGGAGCGGATTTTAGAAGAAGAGTCAGATGAAGCATTTAAAATGAGTATTGCTTCAGTACCAGCTCCACGCTATCTAACTGACATGACTCTTGAAGAAATGTCAAGAGATTGGTTAATGCTCATTCCCAAACAGAAAATAACAGGGGCCCTATGCATTAGAATGGACCAAGCAATAGTGGACAAAACCATCACCTTGAAAGCAAATTTCAGTGTGATTTTCAATCGGCTTGAAGCCCTGATACTACTTAGAGCTTTTACAGAAGAAGGAGCAATAGTGGGCGAAATCTCACCATTACCTTCTCTTCCAGGACATACTGACAAGGATGTCAAAAATGCAATTGAGATCCTCATCGGAGGATTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGCGATGAGAATGGGAGATCTCCACTCTCTACAAAGTAGAAACGGGAAATGGAGAGAACAGTTAAGCCAGAAGTTCGAAGAGATAAGATGGTTGATTGAAGAAGTACGACATAGATTAAAAATTACGGAGAATAGCTTTGAGCAAATAACTTTTATGCAAGCCTTACAACTATTGCTTGAAGTGGAGCAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAATGATAAAAAACACCCTTGTTTCTACT", + "description": "" + } + }, + "description": "A/Jiangsu/428/2021 EPI_ISL_2380100" + }, + "A-Jiangxi-Donghu-346-2013": { + "name": "A-Jiangxi-Donghu-346-2013", + "subtype": "H10NX", + "segments": { + "1": { + "name": "EPI497484|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB2|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAAGAATAAAAGAACTAAGAGATTTGATGTCACAGTCTCGCACTCGCGAGATACTGACAAAAACAACTGTGGACCATATGGCCATAATCAAGAAATACACATCGGGAAGACAGGAGAAGAATCCTGCCCTTAGGATGAAGTGGATGATGGCGATGAAATATCCAATTACAGCAGACAAAAGGATAATGGAGATGATCCCAGAAAGGAATGAGCAAGGTCAGACCCTTTGGAGCAAGACAAATGATGCTGGATCAGAAAGAGTGATGGTGTCACCTCTGGCTGTGACGTGGTGGAACAGAAATGGACCAACGACAAGCACAGTCCATTATCCAAAGGTCTATAAAACCTATTTTGAAAAGGTCGAAAGACTAAAACATGGGACCTTCGGCCCCGTTCACTTCCGAAACCAGGTTAAAATACGCCGCAGGGTCGACATAAACCCAGGCCATGCAGATCTTAGTGCTAAGGAAGCACAAGATGTCATCATGGAGGTCGTATTCCCAAATGAAGTTGGAGCCAGAATATTAACATCAGAGTCACAGTTAACGATAACCAAGGAAAAGAAGGAGGAGCTTCAGGGCTGCAAAATTGCCCCTTTAATGGTGGCTTACATGTTGGAGAGGGAACTGGTTCGCAAAACAAGATTTCTACCAGTAGCTGGAGGGACAAGCAGCGTGTATATCGAAGTATTACATTTGACCCAAGGGACCTGCTGGGAGCAAATGTACACACCGGGAGGGGAAGTGAGAAATGATGATGTTGATCAGAGTTTAATTATTGCTGCTAGAAATATTGTTAGAAGAGCAACAGTGTCAGCAGACCCGTTGGCTTCGCTTTTGGAGATGTGCCATAGTACACAGATTGGCGGGGTTAGGATGGTTGACATCCTTAGACAAAACCCAACAGAAGAACAGGCTGTGGATATATGTAAGGCAGCAATGGGCCTAAGGATCAGTTCATCCTTCAGCTTTGGAGGTTTCACTTTCAAAAGGACAAGTGGGTCATCTGTCAAAAAGGAAGAAGAAGTGCTCACAGGCAACCTCCAAACATTGAAAATAAGAGTACATGAAGGATATGAGGAATTCACAATGGTTGGGCGAAGAGCAACAGCCATTCTAAGGAAAGCAACCAGAAGACTGATCCAACTGATAGTGAGTGGGAAAGACGAGCAATCAATTGCCGAGGCAATCATAGTGGCAATGGTATTCTCACAAGAGGATTGTATGGTAAAGGCAGTGAGAGGTGATTTGAACTTTGTCAACAGAGCAAACCAGCGGCTAAATCCAATGCATCAACTCCTGAGGCATTTCCAAAAGGATGCAAAGGTCCTGTTTCAAAACTGGGGAATTGAACCCATTGACAATGTAATGGGGATGATCGGAATATTGCCTGACATGACCCCCAGCACAGAGATGTCATTGAGAGGAGTGAGAGTTAGTAAAATGGGAGTAGATGAATATTCCAGTACTGAGAGAGTGGTCGTGAGTATTGATCGTTTCTTGAGGGTCCGAGACCAGAGGGGAAACGTACTCCTGTCTCCTGAAGAGGTTAGTGAAACACAGGGAACAGAAAAGCTGACTATAACATATTCATCGTCCATGATGTGGGAGATCAATGGTCCGGAATCAGTGCTAGTTAACACATATCAATGGATCATTAGAAATTGGGAAACTGTAAAGATTCAATGGTCCCAAGATCCTACAATGCTATACAATAAGATGGAATTTGAACCCTTTCAATCCCTAGTGCCTAAAGCTGTCAGAGGCCAATATAGTGGGTTCGTAAGGGTTCTATTCCAACAGATGCGTGACGTACTGGGGACATTTGACACTGTCCAAATAATAAAGCTATTACCATTTGCAGCAGCCCCGCCGAAGCAGAGTAGGATGCAGTTCTCTTCTCTAACTGTGAATGTGAGGGGTTCAGGAATGAGAATAGTTGTGAGAGGCAACTCTCCTGTGTTCAACTACAACAAGGCAACCAAGAGGCTTACGGTGCTTGGGAAGGATGCAGGTGCATTGATGGAAGACCCAGATGAGGGAACAGCAGGGGTGGAATCTGCAGTATTGAGGGGATTTCTGATTCTGGGCAAAGAAGACAAGAGATATGGGCCAGCATTGAGCATCAACGAATTGAGCAATCTTGCGAAAGGAGAGAAGGCTAATGTGTTGATAGGGCAAGGAGACGTGGTGTTGGTAATGAAACGGAAACGGGACTCTAGCATACTTACTGACAGTCAGACAGCGACCAAAAGGATTCGGATGGCCATCAATTAA", + "description": "" + }, + "2": { + "name": "EPI497483|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PB1|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATGTCAACCCGACTTTACTTTTCTTGAAAGTGCCAGCGCAAAATGCCATAAGTACAACGTTCCCTTATACTGGAGACCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTCAACAGAACACATAAATACTCAGAAAATGGAAAGTGGACAACGAACACAGAGACTGGAGCACCCCAACTAAATCCGATTGATGGACCATTGCCTGAGGACAACGAGCCAAGTGGGTATGCACAAACGGATTGCGTATTGGAAGCAATGGCTTTCCTTGAAGAATCTCACCCAGGGATCTTTGAAAACTCGTGTCTCGAAACTATGGAAATTGTTCAGCAAACAAGAGTGGATAAACTGACCCAAGGCCGCCAGACCTATGACTGGACGTTGAATAGAAATCAGCCGGCTGCTACTGCATTGGCCAATACTATAGAGGTATTCAGATCGAATGGCCTAACCGCCAATGAATCAGGAAGGTTGATCGATTTCCTCAAGGATGTGATGGATTCAATGGATAAGGAAGAAATGGAGATTACAACACATTTCCAGAGGAAGAGGAGAGTGAGGGACAATATGACCAAGAAAATGGTCACACAGAGAACAATAGGGAAGAAAAAACAAAGGCTGAACAAAAGGAGCTACCTAATAAGAGCATTGACATTGAACACAATGACAAAGGATGCTGAAAGAGGCAAGTTGAAAAGGAGGGCAATCGCAACACCCGGGATGCAAATCAGAGGATTCGTGTATTTTGTAGAAGCACTAGCGAGGAGCATCTGTGAGAAACTTGAGCAATCTGGCCTCCCTGTCGGAGGGAATGAGAAAAAGGCTAAACTGGCAAATGTTGTGAGAAAGATGATGGCTAATTCACAAGATACAGAGCTCTCCTTCACAATTACTGGAGACAACACCAAATGGAATGAGAATCAAAACCCCCGGATGTTTCTAGCAATGATAACATACATCACAAGAAACCAGCCAGAGTGGTTTAGAAATGTCTTAAGCATTGCTCCTATAATGTTCTCAAACAAGATGGCGAGATTAGGGAAAGGATACATGTTCGAAAGTAAGAGTATGAAGTTACGGACACAAGTACCAGCGGAAATGCTCGCAAATATTGACCTGAAATATTTCAACAAATCAACAAGAGAGAAAATCGAGAAAATAAGACCTCTACTGATAGATGGCACAGCCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAACATGCTGAGTACAGTCTTGGGAGTTTCAATTCTGAATCTCGGGCAGAAGAAGTACACCAAAACCACATATTGGTGGGATGGACTCCAATCCTCAGATGACTTCGCCCTCATAGTGAATGCACCGAATCATGAGGGAATACAGGCAGGAGTGGATAGGTTCTATAGAACCTGCAAACTAGTTGGGATAAATATGAGCAAGAAGAAATCCTACATAAATCGGACAGGAACATTCGAATTCACAAGCTTTTTCTACCGCTATGGATTTGTAGCTAACTTCAGTATGGAGTTGCCCAGTTTTGGAGTGTCCGGGATAAATGAGTCAGCTGACATGAGCATCGGTGTTACAGTAATAAAGAACAATATGATAAACAACGATCTTGGACCAGCAACAGCTCAGATGGCCCTTCAGCTATTTATCAAAGACTACAGATACACATACCGATGTCACAGGGGTGATACACAAATTCAAACGAGGAGAGCATTCGAGCTGAAGAAGCTGTGGGAGCAGACCCGTTCGAAGGCAGGACTGTTGGTTTCAGATGGAGGGCCAAACCTGTACAATATCCGGAACCTCCACATTCCAGAGGTCTGCTTGAAATGGGAATTGATGGATGAAGACTACCAGGGCAGGCTGTGTAATCCTATGAATCCGTTTGTCAGTCATAAGGAAATTGATTCAGTCAATAGTGCTGTGGTGATGCCAGCTCATGGCCCAGCCAAAAGCATGGAGTATGATGCCGTTGCAACTACACATTCATGGATTCCTAAGAGGAATCGCTCCATTCTCAATACCAGCCAAAGGGGGATCCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACCTATTCGAAAAGTTCTTCCCCAGCAGTTCATACCGGAGGCCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTTTCTAGGGCCCGAATTGATGCACGAATTGACTTCGAATCTGGAAGGATTAAGAAAGAAGAGTTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAATTAG", + "description": "" + }, + "3": { + "name": "EPI497482|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|PA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTATTCTGATTTCCACTTCATTGACGAACGGGGCGAATCAACTATTATAGAATCTGGCGATCCAAATGCGTTGTTGAAACATCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACGGGAGTCGAAAAACCCAAATTCCTCCCGGATCTGTATGACTACAAGGAAAACCGATTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATACACATTTTCTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCAAAAGAAGTGAACGCCAGAATCGAGCCATTTCTAAAGACAACACCACGCCCGCTCAGATTGCCTAATGGGCCTCCCTGTTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTAAAATTAAGCATTGAAGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAGGGCATAAACCCCAACTATCTCCTGACTTGGAAGCAGGTGCTATCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAGGACAAAAAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGTAAAGATGTCAACGACCTGAAACAGTACGACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCATGTGAATTGACTGATTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGAAGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCGGCCATGGATGACTTTCAACTGATTCCAATGATAAGTAAATGCAGAACCAAAGAAGGAAGACGGAAAACAAACCTATATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGATGTGGTGAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGATATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTCCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCTAAGGGAGTGGAGGAAGGTTCCATTGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTGTTCAATAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTCGATCTTGAGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGATAG", + "description": "" + }, + "4": { + "name": "EPI497477|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|HA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGTACAAAATAGTAGTGATAATCGCGCTCCTTGGAGCTGTGAAAGGTCTTGATAAAATCTGTCTAGGACATCATGCAGTGGCTAATGGGACCATCGTAAAGACTCTCACAAACGAACAGGAAGAGGTAACCAACGCTACTGAAACAGTGGAGAGTACAGGCATAAACAGATTATGTATGAAAGGAAGAAAACATAAAGACCTGGGCAACTGCCATCCAATAGGGATGCTAATAGGGACTCCAGCTTGTGATCTGCACCTTACAGGGATGTGGGACACTCTCATTGAACGAGAGAATGCTATTGCTTACTGCTACCCTGGAGCTACTGTAAATGTAGAAGCACTAAGGCAGAAGATAATGGAGAGTGGAGGGATCAACAAGATAAGCACTGGCTTCACTTATGGATCTTCCATAAACTCGGCCGGGACCACTAGAGCGTGCATGAGGAATGGAGGGAATAGCTTTTATGCAGAGCTTAAGTGGCTGGTATCAAAGAGCAAAGGACAAAACTTCCCTCAGACCACGAACACTTACAGAAATACAGACACGGCTGAACACCTCATAATGTGGGGAATTCATCACCCTTCTAGCACTCAAGAGAAGAATGATCTATATGGAACACAATCACTGTCCATATCAGTCGGGAGTTCCACTTACCGGAACAATTTTGTTCCGGTTGTTGGAGCAAGACCTCAGGTCAATGGACAAAGTGGCAGAATTGATTTTCACTGGACACTAGTACAGCCAGGTGACAACATCACCTTCTCACACAATGGGGGCCTGATAGCACCGAGCCGAGTTAGCAAATTAATTGGGAGGGGATTGGGAATCCAATCAGACGCACCAATAGACAATAATTGTGAGTCCAAATGTTTTTGGAGAGGGGGTTCTATAAATACAAGGCTTCCCTTTCAAAATTTGTCACCAAGAACAGTGGGTCAGTGTCCTAAATATGTGAACAGAAGAAGCTTGATGCTTGCAACAGGAATGAGAAACGTACCAGAACTAATACAAGGGAGAGGTCTATTTGGTGCAATAGCAGGGTTTTTAGAGAATGGGTGGGAAGGAATGGTAGATGGCTGGTATGGTTTCAGACATCAAAATGCTCAGGGCACAGGCCAGGCCGCTGATTACAAGAGTACTCAGGCAGCTATTGATCAAATCACTGGGAAACTGAATAGACTTGTTGAAAAAACCAATACTGAGTTCGAGTCAATAGAATCTGAGTTCAGTGAGATCGAACACCAAATCGGTAACGTCATCAATTGGACTAAGGATTCAATAACCGACATTTGGACTTATCAGGCTGAGCTGTTGGTGGCAATGGAGAACCAGCATACAATCGACATGGCTGACTCAGAGATGTTGAATCTATATGAAAGAGTGAGGAAACAACTAAGGCAGAATGCAGAAGAAGATGGGAAAGGATGTTTTGAGATATATCATGCTTGTGATGATTCATGCATGGAGAGCATAAGAAACAACACCTATGACCATTCACAGTACAGAGAGGAAGCTCTTTTGAACAGATTGAATATCAACCCAGTGACACTCTCTTCTGGATATAAAGACATCATTCTCTGGTTTAGCTTCGGGGCATCATGTTTTGTTCTTCTAGCCGTTGTCATGGGTCTTTTCTTTTTCTGTCTGAAGAATGGAAACATGCGATGCACAATCTGTATTTAG", + "description": "" + }, + "5": { + "name": "EPI497480|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGCGTCTCAAGGCACCAAACGATCCTATGAACAGATGGAGACTGGTGGAGAACGCCAGAATGCTACTGAGATCAGGGCATCTGTCGGAAGAATGGTTAGCGGCATTGGGAGATTCTACATACAGATGTGTACAGAACTCAAACTCAGTGACAATGAAGGGAGGCTGATCCAGAACAGTATAACAATAGAGAGAATGGTACTCTCTGCATTTGATGAAAGAAGGAACAGATACCTGGAAGAGCACCCCAGTGCGGGAAAGGACCCGAAGAAAACTGGAGGTCCAATTTACCGAAGAAGAGACGGGAAATGGGTGAGAGAGCTGATCCTGTATGACAAGGAGGAAATCAGGAGAATTTGGCGTCAAGCGAACAATGGAGAAGACGCAACTGCTGGTCTTACCCATCTGATGATATGGCATTCCAACCTGAATGATGCCACATATCAGAGAACGAGAGCTCTCGTGCGTACTGGAATGGACCCCAGGATGTGCTCTCTGATGCAAGGATCAACTCTCCCGAGGAGATCTGGAGCTGCAGGAGCAGCAGTAAAGGGGATAGGGACAATGGTGATGGAGCTGATTCGGATGGTAAAACGAGGGATAAACGACCGGAATTTCTGGAGAGGCGAAAATGGAAGAAGAACAAGAGTTGCATACGAGAGGATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGAGCAATGGTGGATCAAGTGCGAGAGAGCAGAAATCCTGGAAATGCTGAAATAGAAGATCTCATTTTTCTGGCAAGGTCTGCACTCATCCTGAGAGGATCTGTGGCCCATAAGTCCTGCTTGCCTGCTTGTGTGTACGGACTTGCAGTGGCCAGTGGATATGACTTTGAGAGAGAAGGATACTCCCTGGTTGGAATAGACCCTTTCCGTCTGCTTCAAAACAGCCAGGTTTTTAGTCTAATTAGACCAAATGAGAACCCAGCACACAAGAGTCAACTAGTGTGGATGGCATGCCACTCTGCAGCATTTGAGGACCTTAGAGTCTCAAGTTTCATCAGAGGGACAAGAATGGTCCCAAGAGGACAATTATCCACCAGAGGGGTTCAAATTGCTTCAAATGAGAACATGGAAGCAATGGACTCCAACACTCTTGAACTGAGAAGTAGATATTGGGCTATAAGAACCAGGAGCGGAGGGAACACCAACCAACAGAGGGCATCTGCGGGACAGATTAGCGTTCAACCCACTTTCTCGGTACAGAGAAATCTCCCCTTCGAAAGAGCGACCATTATGGCAGCTTTTACAGGAAATACTGAGGGTAGAACGTCTGACATGAGGACTGAAATCATAAGAATGATGGAAAGTGCAAGACCAGAAGATGTGTCATTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAATTAA", + "description": "" + }, + "6": { + "name": "EPI497479|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAATCCAAATCAGAAAATAATAACCATTGGGTCAGTATCCTTAGGATTGGTAATCCTTAATATTCTCCTACACATAGTTAGCATTACAGTAACAGTATTGGTTCTCCCAGGGAATGGAAATAATGAGAGTTGCAATGAAACAGTCATTAGGGAATACAATGAAACAGTAAGGGTTGAGAAGGTAACACAATGGCACAATACCAATGTTATTGAGTATATAGAGAGACCGGAGAATGATCATTTCATGAACAATACAGAAGCATTGTGTGATGCTAAGGGTTTCGCACCCTTTTCCAAAGACAACGGAATAAGAATTGGATCGAGGGGTCATGTTTTTGTCATAAGGGAACCGTTTGTTTCTTGCTCGCCAACAGAGTGCAGGACGTTCTTCCTTACTCAAGGTTCCCTACTCAATGACAAACATTCTAATGGCACAGTTAAAGACCGGAGCCCCTATAGAACTCTAATGAGTGTAGAAATAGGGCAATCACCCAATGTGTACCAGGCAAGGTTTGAGGCAGTAGCGTGGTCAGCTACTGCATGTCATGATGGGAAGAAATGGATGACAATTGGAGTAACGGGCCCTGATGCCAAAGCGGTGGCAGTGGTGCATTATGGGGGAATTCCTACTGATGTAATCAATTCCTGGGCGGGAGATATTTTAAGAACTCAGGAATCATCATGCACTTGCATTCAAGGTGAATGTTTTTGGGTAATGACAGATGGACCAGCAAACAGACAAGCGCAATACAGGGCGTTCAAAGCCAAACAGGGGAAAATAGTTGGGCAAGCTGAAATCAGTTTCAATGGAGGCCATATAGAAGAATGCTCATGCTACCCCAATGAAGGTAAAGTGGAATGTGTTTGTAGGGACAATTGGACCGGAACCAACAGGCCAGTGTTGGTGATTTCTCCAGATTTGTCTTACAGAGTCGGATATTTGTGTGCAGGTCTCCCCAGTGACACCCCAAGAGGAGAAGATAGTCAGTTCACGGGATCATGCACTAGCCCAATGGGAAATCAGGGATACGGAGTTAAGGGATTTGGATTCAGGCAGGGCAATGATGTATGGATGGGAAGGACCATTAGCAGAACATCAAGATCAGGGTTTGAAATCCTGAAAGTCAGAAATGGCTGGGTACAAAACAGTAAAGAGCAGATCAAGAGGCAAGTTGTGGTCGATAACTTGAATTGGTCAGGATACAGTGGTTCTTTCACACTACCAGCGGAGTTAACAAAGAGAAATTGTTTGGTTCCATGTTTTTGGGTTGAGATGATAAGGGGGAATCCGGAAGAAAAGACGATATGGACATCAAGTAGCTCCATTGTGATGTGTGGAGTAGACCATGAGATTGCCGACTGGTCATGGCACGATGGAGCTATTCTTCCTTTTGACATCGATAAGATGTAA", + "description": "" + }, + "7": { + "name": "EPI497478|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|MP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATTCCATCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAGGATGTTTTTGCAGGGAAGAACGCAGATCTCGAGGCTCTCATGGAGTGGATAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGGATTTTAGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGTTTTGTCCAAAACGCCCTAAATGGGAATGGAGACCCAAACAACATGGACAAGGCAGTTAAATTGTACAAGAAACTGAAGAGAGAAATGACATTTCATGGAGCAAAGGAAGTTGCACTCAGTTACTCAACTGGTGCGCTTGCCAGCTGCATGGGTCTCATATACAACAGGATGGGGACAGTAACCGCAGAAGGGGCTCTTGGACTAGTATGTGCCACTTGTGAGCAGATTGCTGACGCACAACATCGGTCCCACAGGCAGATGGCGACTACTACCAACCCACTAATTAGGCACGAGAATAGAATGGTACTAGCCAGCACTACGGCTAAGGCTATGGAGCAGATGGCTGGATCAAGTGAGCAGGCAGCGGAAGCCATGGAAGTCGCAAGTCAGGCTAGGCAAATGGTGCAGGCTATGAGAACAGTCGGGACTCACCCTAACTCCAGTACAGGTCTAAAGGATGATCTTATTGAAAATTTGCAGGCTTACCAAAACCGGATGGGAGTGCAACTGCAGCGGTTCAAGTGATCCTCTCGTTGTTGCAGCTAACATTATTGGGATATTGCACTTGATATTGTGGATTCTTGATCGTCTTTTCTTCAAATGCATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAATGCCTGAGTCTATGAGGGAAGAATATCGGCAGGAACAGCAGAATGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGAAGTAA", + "description": "" + }, + "8": { + "name": "EPI497481|A/Jiangxi-Donghu/346/2013|EPI_ISL_152846|NS|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATTCCAACACTGTGTCAAGCTTCCAGGTAGACTGCTTTCTTTGGCATGTCCGCAAACGGTTTGCAGACCAAGAACTGGGTGATGCCCCATTTCTAGACCGGCTTCGCCGAGATCAGAAGTCCCTGAGAGGAAGAAGCAGCACTCTTGGTCTGGACATCAGAACAGCAACTCGTGAAGGAAAGCATATAGTGGAGCGAATTCTGGAGGAAGAGTCAGACGAAGCATTTAAAATGACTATTGCTTCAGTGCCAGCTCCACGCTATCTAACTGACATGACTCTTGAAGAAATGTCAAGAGATTGGTTAATGCTCATACCCAAACAGAAAGTGACAGGGTCCCTTTGCATTAGAATGGACCAAGCAATAGTGGACAAAAACATCACATTGAAAGCAAATTTCAGTGTGATTTTCAATCGATTGGAAGCCCTAATACTACTTAGAGCTTTTACGGATGAAGGAGCAATAGTGGGCGAAATCTCACCATTACCTTCTCTTCCAGGACATACTGACAAGGATGTCAAAAATGCAATTGAGGTCCTCATCGGAGGATTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCGGCGATGAGGATGGGAGACCTCCACTCTCTCCAAAGTAGGAACGGGAAATGGAGAGAACAATTAAGCCAGAAGTTCGAAGAAATAAGATGGTTGATTGAAGAAGTACGACATAGGTTAAAGATTACAGAGAATAGCTTTGAACAAATAACTTTTATGCAAGCCTTACAACTATTGCTTGAAGTGGAGCAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAA", + "description": "" + } + }, + "description": "A/Jiangxi-Donghu/346/2013 EPI_ISL_152846" + }, "A-Brisbane-02-2018": { "name": "A-Brisbane-02-2018", "subtype": "H1N1", @@ -859,6 +953,53 @@ }, "description": "AY818135.1 Influenza A virus (A/Viet Nam/1203/2004(H5N1)) hemagglutinin HA gene, complete cds" }, + "A-Anhui-1-2013": { + "name": "A-Anhui-1-2013", + "subtype": "H7NX", + "segments": { + "1": { + "name": "EPI439504|A/Anhui/1/2013|EPI_ISL_138739|PB2|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAAGAATAAAAGAACTAAGAGATTTGATGTCACAGTCTCGCACTCGCGAGATACTGACAAAAACAACTGTGGACCATATGGCCATAATCAAGAAATATACATCAGGAAGACAGGAGAAGAATCCTGCCCTTAGGATGAAGTGGATGATGGCAATGAAATATCCAATTACGGCAGACAAAAGGATAATGGAGATGATCCCGGAAAGAAATGAGCAAGGTCAGACCCTTTGGAGCAAGACAAATGATGCTGGATCAGACAGAGTGATGGTGTCACCTCTGGCTGTGACGTGGTGGAACAGAAATGGACCAACGACAAGCACAGTCCATTATCCAAAGGTCTATAAAACCTATTTTGAAAAGGTCGAAAGGCTAAAACATGGAACCTTCGGCCCCGTTCACTTCAGAAACCAGGTTAAAATACGCCGCAGGGTCGACATAAACCCGGGCCATGCAGATCTTAGTGCTAAAGAAGCACAGGATGTCATCATGGAGGTCGTATTCCCAAACGAAGTTGGAGCCAGAATATTGACATCAGAGTCACAGTTAACGATTACCAAGGAAAAGAAGAAGGAGCTTCAGGACTGCAAAATTGCCCCTTTAATGGTGGCTTACATGTTGGAGAGAGAACTGGTTCGCAAAACAAGATTCCTACCAGTAGCTGGAGGGACAAGCAGCGTGTATATCGAGGTGTTGCATTTGACCCAAGGGACCTGCTGGGAGCAAATGTACACACCGGGAGGGGAAGTGAGAAATGATGATGTTGATCAGAGTTTAATTATTGCTGCTAGAAATATTGTTAGAAGAGCAACAGTATCAGCAGACCCGTTGGCTTCGCTTTTGGAGATGTGCCATAGTACACAGATTGGCGGGGTTAGGATGGTTGACATCCTTAGACAAAACCCAACAGAAGAACAGGCTGTGGATATATGTAAGGCAGCAATGGGTCTAAGGATCAGTTCATCCTTCAGCTTTGGAGGTTTCACTTTCAAAAGGACAAGTGGGTCATCTGTCAAAAGGGAAGAAGAAGTGCTCACAGGCAACCTCCAAACATTGAAAATAAGAGTACATGAAGGATATGAGGAATTCACAATGGTCGGGCGAAGAGCAACAGCCATTCTAAGGAAAGCAACCAGAAGACTGATCCAACTGATAGTGAGTGGGAAAGACGAGCAATCAATCGCCGAGGCAATCATAGTGGCAATGGTATTCTCACAAGAGGATTGTATGATAAAGGCAGTGAGAGGTGATTTGAACTTTGTCAACAGAGCAAACCAGCGGCTAAATCCCATGCATCAACTCCTGAGGCATTTCCAAAAGGATGCAAAGGTCCTGTTTCAAAACTGGGGAATTGAACCCATTGACAATGTAATGGGGATGATCGGAATATTGCCTGACATGACCCCCAGCACAGAGATGTCATTGAGAGGAGTGAGAGTTAGTAAAATGGGAGTAGATGAATATTCCAGCACTGAGAGAGTGGTCGTGAGTATTGATCGTTTCTTGAGGGTCCGAGACCAGAGGGGAAACGTACTCCTGTCTCCTGAAGAGGTTAGTGAAACACAGGGAACAGAAAAGCTGACTATAACATATTCATCGTCCATGATGTGGGAGATCAATGGTCCGGAATCAGTGCTAGTTAACACATATCAATGGATCATTAGAAATTGGGAAAATGTAAAGATTCAATGGTCCCAAGATCCTACAATGCTATACAATAAGATGGAATTTGAACCCTTTCAATCCCTAGTGCCTAAAGCTGCCAGAGGCCAATATAGTGGGTTCGTGAGGGTTCTATTCCAACAGATGCGTGACGTACTGGGAACATTTGACACTGTCCAAATAATAAAGCTATTACCATTTGCAGCAGCCCCGCCGAAGCAGAGTAGGATGCAGTTCTCTTCTCTAACTGTGAATGTGAGGGGTTCCGGAATGAGAATAGTTGTGAGAGGCAATTCTCCTGTGTTCAACTACAACAAGGCAACCAAGAGGCTTACGGTGCTTGGAAAGGATGCAGGTGCATTGATGGAAGACCCCGATGAGGGAACAGCAGGAGTGGAATCTGCGGTATTGAGGGGATTTCTGATTCTGGGCAAAGAAGACAAAAGATATGGGCCAGCATTGAGCATCAACGAATTGAGCAATCTTGCGAAAGGAGAGAAGGCTAATGTGTTGATAGGGCAAGGAGACGTTGTGTTGGTGATGAAACGGAAACGGGACTCTAGCATACTTACTGACAGTCAGACAGCGACCAAAAGGATTCGGATGGCCATCAATTAA", + "description": "" + }, + "2": { + "name": "EPI439508|A/Anhui/1/2013|EPI_ISL_138739|PB1|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATGTCAATCCGACTTTACTTTTCTTGAAAGTGCCAGTGCAAAATGCTATAAGTACCACTTTCCCTTATACTGGAGACCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTCAACAGAACACATAAATACTCAGAAAAAGGAAAGTGGACAACGAACACAGAGACTGGAGCACCCCAACTCAATCCAATTGATGGACCATTACCTGAGGACAACGAGCCGAGTGGGTATGCACAAACGGATTGTGTATTGGAAGCAATGGCTTTCCTTGAAGAATCTCACCCAGGGATCTTTGAAAACTCGTGTCTCGAAACGATGGAAATTGTTCAGCAAACAAGAGTGGATAAACTGACCCAAGGCCGCCAGACCTATGACTGGACGTTGAATAGAAATCAGCCGGCTGCTACCGCATTGGCCAACACTATAGAGGTATTCAGATCGAATGGCCTGACAGCCAATGAATCAGGAAGGTTGATCGATTTCCTCAAGGACGTGATGGATTCAATGGATAAGGAAGAAATGGAGATTACAACACATTTCCAGAGGAAGAGGAGAGTGAGGGACAACATGACCAAGAAAATGGTCACACAGAGAACAATAGGAAAGAAAAAACAAAGACTGAACAAAAGGAGCTACCTAATAAGAGCACTGACATTGAACACAATGACAAAGGATGCTGAAAGAGGCAAGCTGAAAAGGAGGGCAATCGCAACACCCGGGATGCAAATCAGAGGATTCGTGTATTTTGTAGAAGCACTAGCGAGGAGCATCTGTGAGAAACTTGAGCAATCTGGCCTCCCTGTCGGAGGGAATGAGAAGAAAGCTAAATTGGCAAATGTTGTGAGGAAGATGATGACTAATTCACAAGATACAGAGCTCTCCTTCACAATTACTGGGGACAACACCAAATGGAATGAGAATCAAAACCCCCGGATGTTTCTAGCAATGATAACATACATCACAAGAAACCAGCCAGAATGGTTTAGAAATGTCTTAAGCATTGCTCCTATAATGTTCTCAAACAAGATGGCGAGATTAGGAAAAGGGTACATGTTCGAAAGTAAGAGTATGAAGTTACGGACACAAGTACCAGCGGAAATGCTCGCAAATATTGACCTGAAATACTTCAACAAATCAACAAGAGAGAAAATCGAGAAAATAAGACCTCTACTGATAGATGGCACAGCCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAACATGTTGAGTACAGTCTTAGGAGTTTCAATTCTGAATCTCGGGCAGAAGAAGTACACCAAAACCACATATTGGTGGGACGGACTCCAATCCTCAGATGACTTCGCCCTCATAGTGAATGCACCGAATCATGAGGGAATACAGGCAGGAGTAGATAGGTTCTATAGAACCTGCAAATTAGTTGGGATAAACATGAGCAAGAAGAAATCCTACATAAATCGGACAGGAACATTCGAATTCACAAGCTTTTTCTACCGCTATGGATTCGTAGCTAACTTCAGTATGGAGTTGCCCAGTTTTGGAGTGTCCGGGATTAATGAGTCAGCTGACATGAGCGTTGGTGTTACAGTAATAAAGAACAATATGATAAACAACGATCTTGGACCAGCAACAGCTCAAATGGCCCTTCAGCTATTTATCAAAGACTACAGATACACATACCGATGTCACAGGGGTGATACGCAAATTCAAACGAGGAGAGCATTCGAGCTGAAGAAGCTGTGGGAGCAGACCCGTTCGAAGGCAGGACTGTTGGTTTCAGATGGAGGGCCAAACCTGTACAATATCCGGAACCTCCACATTCCAGAGGTCTGCTTGAAATGGGAATTGATGGATGAAGACTACCAAGGCAGGTTGTGTAATCCTATGAACCCGTTTGTCAGTCATAAGGAAATTGATTCAGTCAACAATGCTGTGGTGATGCCAGCTCATGGCCCAGCCAAAAGCATGGAGTATGATGCCGTTGCAACCACACATTCATGGATTCCTAAGAGGAATCGCTCCATTCTCAACACCAGCCAAAGGGGGATTCTTGAGGACGAACAGATGTACCAGAAGTGCTGCAACCTATTCGAAAAGTTCTTCCCCAGCAGTTCGTACAGGAGGCCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGAATTGATGCACGAATTGACTTCGAATCTGGAAGGATTAAGAAAGAAGAGTTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAAATAG", + "description": "" + }, + "3": { + "name": "EPI439503|A/Anhui/1/2013|EPI_ISL_138739|PA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGAAGACTTTGTGCGACAGTGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACAAACAAATTCGCATCAATATGCACACACTTAGAAGTCTGCTTCATGTACTCTGATTTCCACTTCATCGACGAACGAGGAGAATCAACTATAATAGAATCTGGCGATCCAAATGCGCTGCTGAAACACCGATTTGAAATAATCGAAGGGAGAGACCGAACAATGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGAGCCGAAAAACCCAAATTTCTCCCGGATCTGTATGACTACAAGGAAAACCGTTTCATTGAAATTGGAGTGACGAGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAATAAAATAAAATCCGAGAAGACACACATCCATATTTTTTCATTCACTGGAGAAGAGATGGCCACCAAAGCAGATTACACTCTTGACGAAGAAAGCAGGGCAAGAATCAAAACCAGGCTGTTCACCATAAGGCAGGAAATGGCCAGCAGGGGTCTATGGGATTCCTTTCGTCAGTCTGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGAACCATGCGCAGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAGATGTCAAAAGAAGTGAACGCCAGAATTGAGCCATTTCTAAGAACAACACCACGCCCTCTCAGATTGCCTAATGGGCCTCCCTGCTCTCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGGACCCGAGCCACGAAGGGGAGGGGATACCGCTATATGATGCGATCAAATGCATGAAAACGTTCTTCGGGTGGAAAGAGCCCAACATTATCAAACCACATGAGAAAGGCATAAACCCCAATTATCTCCTGACTTGGAAGCAGGTGCTAGCAGAACTTCAGGACATTGAAAATGAAGAGAAGATTCCAAGGACAAAGAACATGAAGAAAACAAGCCAATTAAAGTGGGCACTCGGTGAGAACATGGCACCGGAGAAGGTGGACTTTGAGGATTGCAAAGATGTCAACGACTTGAAACAGTACAACAGTGATGAGCCAGAGCCCAGATCACTAGCATGTTGGATCCAGAATGAATTCAACAAGGCGTGTGAACTGACTGACTCAAGCTGGGTAGAACTTGATGAAATAGGGGAAGATGTTGCCCCAATCGAACACATTGCAAGCATGAGACGGAACTATTTTACAGCAGAGGTGTCCCACTGCAGGGCTACTGAATATATAATGAAGGGAGTGTACATAAATACAGCTTTGCTCAATGCATCTTGTGCAGCCATGGATGACTTTCAACTGATTCCAATGATAAGTAAATGTAGAACCAAAGAAGGAAGACGGAAAACAAACCTGTATGGATTCATTATAAAAGGAAGATCTCATTTGAGGAATGATACCGACGTGGTAAACTTTGTAAGTATGGAATTTTCCCTTACCGACCCAAGGTTGGAACCACATAAATGGGAAAAGTATTGTGTTCTTGAAATAGGGGACATGCTCCTGCGAACTGCAGTAGGCCAAGTGTCAAGACCCATGTTTCTGTATGTGAGAACCAATGGGACCTCCAAGATCAAGATGAAATGGGGTATGGAAATGAGACGCTGCCTTCTTCAATCTCTCCAACAGATTGAGAGCATGATTGAAGCTGAATCCTCCGTCAAAGAGAAAGACCTGACCAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGAGAGTCACCTAAAGGAGTGGAGGAAGGTTCCATCGGGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTATTCAACAGCCTATATGCATCTCCGCAACTCGAGGGGTTCTCAGCTGAATCGAGAAAACTGCTACTCATTGTTCAGGCGCTTAGGGATAACCTGGAACCTGGAACCTTTGATCTTGAAGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAAGATAG", + "description": "" + }, + "4": { + "name": "EPI439507|A/Anhui/1/2013|EPI_ISL_138739|HA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAACACTCAAATCCTGGTATTCGCTCTGATTGCGATCATTCCAACAAATGCAGACAAAATCTGCCTCGGACATCATGCCGTGTCAAACGGAACCAAAGTAAACACATTAACTGAAAGAGGAGTGGAAGTCGTCAATGCAACTGAAACAGTGGAACGAACAAACATCCCCAGGATCTGCTCAAAAGGGAAAAGGACAGTTGACCTCGGTCAATGTGGACTCCTGGGGACAATCACTGGACCACCTCAATGTGACCAATTCCTAGAATTTTCAGCCGATTTAATTATTGAGAGGCGAGAAGGAAGTGATGTCTGTTATCCTGGGAAATTCGTGAATGAAGAAGCTCTGAGGCAAATTCTCAGAGAATCAGGCGGAATTGACAAGGAAGCAATGGGATTCACATACAGTGGAATAAGAACTAATGGAGCAACCAGTGCATGTAGGAGATCAGGATCTTCATTCTATGCAGAAATGAAATGGCTCCTGTCAAACACAGATAATGCTGCATTCCCGCAGATGACTAAGTCATATAAAAATACAAGAAAAAGCCCAGCTCTAATAGTATGGGGGATCCATCATTCCGTATCAACTGCAGAGCAAACCAAGCTATATGGGAGTGGAAACAAACTGGTGACAGTTGGGAGTTCTAATTATCAACAATCTTTTGTACCGAGTCCAGGAGCGAGACCACAAGTTAATGGTCTATCTGGAAGAATTGACTTTCATTGGCTAATGCTAAATCCCAATGATACAGTCACTTTCAGTTTCAATGGGGCTTTCATAGCTCCAGACCGTGCAAGCTTCCTGAGAGGAAAATCTATGGGAATCCAGAGTGGAGTACAGGTTGATGCCAATTGTGAAGGGGACTGCTATCATAGTGGAGGGACAATAATAAGTAACTTGCCATTTCAGAACATAGATAGCAGGGCAGTTGGAAAATGTCCGAGATATGTTAAGCAAAGGAGTCTGCTGCTAGCAACAGGGATGAAGAATGTTCCTGAGATTCCAAAGGGAAGAGGCCTATTTGGTGCTATAGCGGGTTTCATTGAAAATGGATGGGAAGGCCTAATTGATGGTTGGTATGGTTTCAGACACCAGAATGCACAGGGAGAGGGAACTGCTGCAGATTACAAAAGCACTCAATCGGCAATTGATCAAATAACAGGAAAATTAAACCGGCTTATAGAAAAAACCAACCAACAATTTGAGTTGATAGACAATGAATTCAATGAGGTAGAGAAGCAAATCGGTAATGTGATAAATTGGACCAGAGATTCTATAACAGAAGTGTGGTCATACAATGCTGAACTCTTGGTAGCAATGGAGAACCAGCATACAATTGATCTGGCTGATTCAGAAATGGACAAACTGTACGAACGAGTGAAAAGACAGCTGAGAGAGAATGCTGAAGAAGATGGCACTGGTTGCTTTGAAATATTTCACAAGTGTGATGATGACTGTATGGCCAGTATTAGAAATAACACCTATGATCACAGCAAATACAGGGAAGAGGCAATGCAAAATAGAATACAGATTGACCCAGTCAAACTAAGCAGCGGCTACAAAGATGTGATACTTTGGTTTAGCTTCGGGGCATCATGTTTCATACTTCTAGCCATTGTAATGGGCCTTGTCTTCATATGTGTAAAGAATGGAAACATGCGGTGCACTATTTGTATATAA", + "description": "" + }, + "5": { + "name": "EPI439505|A/Anhui/1/2013|EPI_ISL_138739|NP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGCGTCTCAAGGCACCAAACGATCCTATGAACAGATGGAAACTGGTGGGGAACGCCAGAATGCTACTGAGATCAGGGCATCTGTTGGAAGAATGGTTAGCGGCATTGGGAGATTCTACATACAGATGTGTACAGAACTCAAACTCAGTGACAATGAAGGGAGGCTGATTCAGAACAGTATAACAATAGAGAGAATGGTACTCTCTGCATTTGATGAAAGAAGGAACAGATACCTGGAAGAGCACCCCAGTGCAGGAAAGGACCCTAAGAAAACTGGAGGTCCAATTTACAGGAGAAGAGACGGAAAATGGGTGAGAGAGCTGATCCTGTATGACAAAGAGGAAATCAGGAGAATTTGGCGACAAGCGAACAATGGAGAGGATGCAACTGCTGGTCTTACCCATCTGATGATATGGCATTCCAACCTGAATGATGCTACCTATCAGAGAACGAGAGCTCTCGTGCGTACTGGAATGGATCCCCGGATGTGCTCTCTGATGCAAGGATCAACTCTCCCGAGGAGATCTGGAGCTGCAGGTGCAGCAGTGAAGGGGATAGGGACAATGGTGATGGAACTGATTCGGATGATAAAACGAGGGATCAACGACCGGAATTTCTGGAGAGGCGAAAATGGAAGAAGGACAAGAATTGCATATGAGAGAATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGGGCAATGATGGATCAAGTGCGAGAGAGCAGAAATCCTGGGAATGCTGAAATAGAAGATCTCATTTTTCTGGCAAGGTCTGCACTCATCCTGAGAGGATCAGTGGCTCATAAATCCTGCTTGCCTGCTTGTGTGTACGGACTTGCAGTGGCTAGTGGATATGACTTTGAGAGAGAAGGGTACTCCTTGGTTGGAATAGATCCTTTCCGTCTGCTTCAAAACAGCCAGGTCTTTAGTCTCATTAGACCAAATGAGAACCCAGCACATAAGAGCCAACTAGTGTGGATGGCATGCCACTCTGCAGCGTTTGAGGACCTTAGGGTCTCAAGTTTCATTAGAGGGACAAGAATGGTCCCAAGAGGACAGCTATCCACTAGAGGGGTTCAAATTGCTTCAAATGAGAACATGGAAGCAATGGACTCCAATACTCTTGAACTGAGAAGTAGATATTGGGCTATAAGAACCAGAAGCGGAGGGAACACCAACCAACAGAGGGCATCTGCAGGACAGGTCAGCGTTCAACCCACTTTCTCAGTACAGAGAAACCTTCCTTTCGAAAGAGCAACCATTATGGCAGCATTTACAGGAAATACTGAGGGTAGAACGTCTGACATGAGGACTGAAATCATAAGAATGATGGAAAGTGCCAGACCAGAAGATGTGTCATTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAATAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAATTGA", + "description": "" + }, + "6": { + "name": "EPI439509|A/Anhui/1/2013|EPI_ISL_138739|NA|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAATCCAAATCAGAAGATTCTATGCACTTCAGCCACTGCTATCATAATAGGCGCAATCGCAGTACTCATTGGAATAGCAAACCTAGGATTGAACATAGGACTGCATCTAAAACCGGGCTGCAATTGCTCACACTCACAACCTGAAACAACCAACACAAGCCAAACAATAATAAACAACTATTATAATGAAACAAACATCACCAACATCCAAATGGAAGAGAGAACAAGCAGGAATTTCAATAACTTAACTAAAGGGCTCTGTACTATAAATTCATGGCACATATATGGGAAAGACAATGCAGTAAGAATTGGAGAGAGCTCGGATGTTTTAGTCACAAGAGAACCCTATGTTTCATGCGACCCAGATGAATGCAGGTTCTATGCTCTCAGCCAAGGAACAACAATCAGAGGGAAACACTCAAACGGAACAATACACGATAGGTCCCAGTATCGCGCCCTGATAAGCTGGCCACTATCATCACCGCCCACAGTGTACAACAGCAGGGTGGAATGCATTGGGTGGTCAAGTACTAGTTGCCATGATGGCAAATCCAGGATGTCAATATGTATATCAGGACCAAACAACAATGCATCTGCAGTAGTATGGTACAACAGAAGGCCTGTTGCAGAAATTAACACATGGGCCCGAAACATACTAAGAACACAGGAATCTGAATGTGTATGCCACAACGGCGTATGCCCAGTAGTGTTCACCGATGGGTCTGCCACTGGACCTGCAGACACAAGAATATACTATTTTAAAGAGGGGAAAATATTGAAATGGGAGTCTCTGACTGGAACTGCTAAGCATATTGAAGAATGCTCATGTTACGGGGAACGAACAGGAATTACCTGCACATGCAGGGACAATTGGCAGGGCTCAAATAGACCAGTGATTCAGATAGACCCAGTAGCAATGACACACACTAGTCAATATATATGCAGTCCTGTTCTTACAGACAATCCCCGACCGAATGACCCAAATATAGGTAAGTGTAATGACCCTTATCCAGGTAATAATAACAATGGAGTCAAGGGATTCTCATACCTGGATGGGGCTAACACTTGGCTAGGGAGGACAATAAGCACAGCCTCGAGGTCTGGATACGAGATGTTAAAAGTGCCAAATGCATTGACAGATGATAGATCAAAGCCCATTCAAGGTCAGACAATTGTATTAAACGCTGACTGGAGTGGTTACAGTGGATCTTTCATGGACTATTGGGCTGAAGGGGACTGCTATCGAGCGTGTTTTTATGTGGAGTTGATACGTGGAAGACCCAAGGAAGATAAAGTGTGGTGGACCAGCAATAGTATAGTATCGATGTGTTCCAGTACAGAATTCCTGGGACAATGGAACTGGCCTGATGGGGCTAAAATAGAGTACTTCCTCTAA", + "description": "" + }, + "7": { + "name": "EPI439506|A/Anhui/1/2013|EPI_ISL_138739|MP|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATTCCATCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAGGATGTTTTTGCAGGGAAGAACGCAGATCTCGAGGCTCTCATGGAGTGGATAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTAGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGGTTTGTCCAAAACGCCCTAAATGGGAATGGAGACCCAAACAACATGGACAAGGCGGTTAAATTATACAAGAAACTGAAGAGGGAAATGACATTTCATGGAGCAAAGGAAGTTGCACTCAGTTACTCAACTGGTGCGCTTGCCAGCTGCATGGGTCTCATATACAACAGAATGGGGACTGTGACCGCAGAAGGGGCTCTTGGACTAGTATGTGCCACTTGTGAGCAGATTGCTGACGCACAACATCGGTCCCACAGGCAGATGGCGACTACTACTAACCCACTAATTAGGCATGAGAATAGAATGGTACTAGCCAGCACTACGGCTAAGGCTATGGAGCAGATGGCTGGATCAAGTGAACAGGCAGCGGAAGCCATGGAAGTTGCAAGTCAGGCTAGGCAAATGGTGCAGGCTATGAGAACAGTTGGGACTCACCCTAACTCCAGTACAGGTCTAAAAGATGATCTTATTGAAAATTTGCAGGCCTACCAGAACCGGATGGGAGTGCAACTGCAGCGGTTCAAGTGAGCCTCTAGTCGTTGCAGCTAACATTATTGGGATATTGCACTTGATATTGTGGATTCTTGATCGTCTTTTCTTCAAATGCATTTATCGTCGTTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAATGCCTGAGTCTATGAGGGAAGAATATCGGCAGGAACAGCAGAATGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGAAGTAA", + "description": "" + }, + "8": { + "name": "EPI439510|A/Anhui/1/2013|EPI_ISL_138739|NS|E1|WHO-Chinese-National-Influenza-Center", + "sequence": "ATGGATTCCAATACTGTGTCAAGCTTCCAGGTAGACTGCTTTCTTTGGCATGTCCGCAAACGATTTGCAGACCAAGAAATGGGTGATGCCCCATTTCTAGACCGGCTTCGCCGAGATCAGAAGTCCCTGAGAGGAAGAAGCAGCACTCTTGGTCTGGACATCAGAACTGCCACGCGTGAAGGAAAGCATATAGTGGAGCGGATTTTAGAGGAAGAGTCAGATGAAGCATTTAAAATGAGTATTGCTTCAGTGCCAGCTCCACGCTATCTAACTGACATGACTCTTGAAGAAATGTCAAGAGATTGGTTAATGCTCATTCCCAAACAGAAAATAACAGGGTCCCTATGCATTAGAATGGACCAAGCAATAGTGGACAAAAACATCACATTGAAAGCAAATTTCAGTGTGATTTTCAATCGGCTTGAAGCCCTGATACTACTTAGAGCTTTTACGGAAGAAGGAGCAATTGTAGGCGAAATCTCACCATTACCTTCTCTTCCAGGACATACTGACAAGGATGTCAAAAATGCAATTGAGATCCTCATCGGAGGATTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGCGATGAGGATGGGAGATCTCCACTCTCTACAAAGTAGAAACGGGAAATGGAGAGAACAGTTAAGCCAGAAGTTCGAAGAAATAAGATGGTTGATTGAAGAAGTACGACATAGATTAAAAATTACGGAGAATAGCTTTGAGCAAATAACTTTTATGCAAGCCTTACAACTATTGCTTGAAGTGGAGCAAGAGATAAGAACTTTCTCGTTTCAGCTTATTTAA", + "description": "" + } + }, + "description": "A/Anhui/1/2013 EPI_ISL_138739" + }, "A-Shanghai-02-2013": { "name": "A-Shanghai-02-2013", "subtype": "H7NX",