Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

live website has tmb estimation with incomplete command example #2

Open
dlaehnemann opened this issue Nov 27, 2019 · 0 comments
Open

live website has tmb estimation with incomplete command example #2

dlaehnemann opened this issue Nov 27, 2019 · 0 comments

Comments

@dlaehnemann
Copy link
Member

The live website has a part about tmb estimation with an incomplete command example:

https://varlociraptor.github.io/docs/estimating/

Currently, the command reads:

varlociraptor --coding-genome-size 3e7 --tumor-sample tumor --somatic-tumor-events SOMATIC_TUMOR < calls.annotated.bcf > tmb.vl.json

But it should be (with the correct subcommand estimate tmb included:

varlociraptor estimate tmb --coding-genome-size 3e7 --tumor-sample tumor --somatic-tumor-events SOMATIC_TUMOR < calls.annotated.bcf > tmb.vl.json

As this version of the repo does not contain the respective estimating.md file (see issue #1 ), providing a PR would mess up your history...?
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@dlaehnemann