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references.bib
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@inbook{Murata1990,
title = {[22] Three-way Needleman{\textemdash}Wunsch algorithm},
author = {Murata, Mitsuo},
year = {1990},
date = {1990},
publisher = {Elsevier},
pages = {365--375},
doi = {10.1016/0076-6879(90)83024-4},
url = {http://dx.doi.org/10.1016/0076-6879(90)83024-4}
}
@inbook{Nalbantoglu2014,
title = {Dynamic Programming},
author = {{Nalbanto{\u{g}}lu}, {Ö. Ufuk}},
year = {2013},
month = {08},
date = {2013-08-23},
publisher = {Humana Press},
pages = {3--27},
doi = {10.1007/978-1-62703-646-7_1},
url = {http://dx.doi.org/10.1007/978-1-62703-646-7_1},
langid = {en}
}
@article{Thompson2002,
title = {Multiple Sequence Alignment Using ClustalW and ClustalX},
author = {Thompson, Julie D. and Gibson, Toby. J. and Higgins, Des G.},
year = {2002},
month = {08},
date = {2002-08},
journal = {Current Protocols in Bioinformatics},
volume = {00},
number = {1},
doi = {10.1002/0471250953.bi0203s00},
url = {http://dx.doi.org/10.1002/0471250953.bi0203s00},
langid = {en}
}
@article{Katoh2002,
title = {MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform},
author = {Katoh, K.},
year = {2002},
month = {07},
date = {2002-07-15},
journal = {Nucleic Acids Research},
pages = {3059--3066},
volume = {30},
number = {14},
doi = {10.1093/nar/gkf436},
url = {http://dx.doi.org/10.1093/nar/gkf436}
}
@article{Katoh2013,
title = {MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability},
author = {Katoh, K. and Standley, D. M.},
year = {2013},
month = {01},
date = {2013-01-16},
journal = {Molecular Biology and Evolution},
pages = {772--780},
volume = {30},
number = {4},
doi = {10.1093/molbev/mst010},
url = {http://dx.doi.org/10.1093/molbev/mst010},
langid = {en}
}
@article{xu2022,
title = {{\emph{Ggtree}}: A serialized data object for visualization of a phylogenetic tree and annotation data},
author = {Xu, Shuangbin and Li, Lin and Luo, Xiao and Chen, Meijun and Tang, Wenli and Zhan, Li and Dai, Zehan and Lam, Tommy T. and Guan, Yi and Yu, Guangchuang},
year = {2022},
month = {09},
date = {2022-09-28},
journal = {iMeta},
volume = {1},
number = {4},
doi = {10.1002/imt2.56},
url = {http://dx.doi.org/10.1002/imt2.56},
langid = {en}
}
@article{paradis2018,
title = {ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R},
author = {Paradis, Emmanuel and Schliep, Klaus},
editor = {Schwartz, Russell},
year = {2018},
month = {07},
date = {2018-07-17},
journal = {Bioinformatics},
pages = {526--528},
volume = {35},
number = {3},
doi = {10.1093/bioinformatics/bty633},
url = {http://dx.doi.org/10.1093/bioinformatics/bty633},
langid = {en}
}
@article{shiny,
title = {shiny: Web Application Framework for R},
author = {Chang, Winston and Cheng, Joe and Allaire, JJ and Sievert, Carson and Schloerke, Barret and Xie, Yihui and Allen, Jeff and McPherson, Jonathan and Dipert, Alan and Borges, Barbara},
year = {2024},
date = {2024},
url = {https://CRAN.R-project.org/package=shiny}
}