diff --git a/201109_Make_records_figure.ipynb b/201109_Make_records_figure.ipynb index e4fbe0f..ee08818 100644 --- a/201109_Make_records_figure.ipynb +++ b/201109_Make_records_figure.ipynb @@ -1,1199 +1,1199 @@ { - "cells": [ + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "id": "ByTxgS_cc_Uv" + }, + "source": [ + "# Make plot highlighting record datasets over time" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "nN5hn_S3xlf-", + "outputId": "26b72fb5-bea8-41fa-c853-e0c7a9e52490" + }, + "outputs": [ { - "cell_type": "markdown", - "source": [ - "# Make plot highlighting record datasets over time" - ], - "metadata": { - "id": "ByTxgS_cc_Uv" - } + "name": "stdout", + "output_type": "stream", + "text": [ + "Populating the interactive namespace from numpy and matplotlib\n" + ] + } + ], + "source": [ + "from mizani.formatters import comma_format\n", + "import pandas as pd\n", + "import plotnine as p\n", + "\n", + "%pylab inline\n", + "%config InlineBackend.figure_formats = ['retina']\n", + "\n", + "from datetime import datetime" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "id": "aICJfUPyxlgD" + }, + "outputs": [], + "source": [ + "data = pd.read_csv('https://nxn.se/single-cell-studies/data.tsv', sep='\\t', storage_options = {'User-Agent': ''})\n", + "data['Date'] = data['Date'].pipe(pd.to_datetime, format='%Y%m%d')\n", + "data['Reported cells total'] = data['Reported cells total'].str.replace(',', '').map(float)" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": { + "id": "07hF_vjuxlgE" + }, + "outputs": [], + "source": [ + "df = data.query('Measurement == \"RNA-seq\"').reset_index(drop = True)\n", + "df = df.sort_values('Date')\n", + "\n", + "df['Record breaker'] = False\n", + "\n", + "record = 0\n", + "for n, row in df.iterrows():\n", + " if row['Reported cells total'] > record:\n", + " df.loc[n, 'Record breaker'] = True\n", + " record = row['Reported cells total']" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 1000 }, + "id": "Vf8dYAISxlgF", + "outputId": "2e0a1902-d87d-499c-d895-4584343f5051" + }, + "outputs": [ { - "cell_type": "code", - "execution_count": 1, - "metadata": { - "colab": { - "base_uri": "https://localhost:8080/" - }, - "id": "nN5hn_S3xlf-", - "outputId": "26b72fb5-bea8-41fa-c853-e0c7a9e52490" - }, - "outputs": [ - { - "output_type": "stream", - "name": "stdout", - "text": [ - "Populating the interactive namespace from numpy and matplotlib\n" - ] - } + "data": { + "text/html": [ + "\n", + "
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | \n", + "Tang et al NMeth | \n", + "10.1038/NMETH.1315 | \n", + "Fuchou Tang, Catalin Barbacioru, Yangzhou Wang... | \n", + "Nat Methods | \n", + "mRNA-Seq whole-transcriptome analysis of a sin... | \n", + "2009-04-06 | \n", + "- | \n", + "5.0 | \n", + "Mouse | \n", + "Oocyte | \n", + "... | \n", + "No | \n", + "No | \n", + "No | \n", + "No | \n", + "No | \n", + "NaN | \n", + "Pipetting (Manual picking) | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
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2 | \n", + "Islam et al GR | \n", + "10.1101/gr.110882.110 | \n", + "S. Islam, U. Kjallquist, A. Moliner, P. Zajac,... | \n", + "Genome Research | \n", + "Characterization of the single-cell transcript... | \n", + "2011-05-05 | \n", + "- | \n", + "85.0 | \n", + "Mouse | \n", + "Culture | \n", + "... | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "Pipetting (Manual picking) | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
6 | \n", + "Hashimshony et al CR | \n", + "10.1016/j.celrep.2012.08.003 | \n", + "Tamar Hashimshony, Florian Wagner, Noa Sher, I... | \n", + "Cell Reports | \n", + "CEL-Seq: Single-Cell RNA-Seq by Multiplexed Li... | \n", + "2012-08-30 | \n", + "- | \n", + "96.0 | \n", + "C elegans | \n", + "Embryo | \n", + "... | \n", + "No | \n", + "No | \n", + "NaN | \n", + "No | \n", + "No | \n", + "NaN | \n", + "Pipetting (Manual picking) | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
11 | \n", + "Yan et al NSMB | \n", + "10.1038/nsmb.2660 | \n", + "Liying Yan, Mingyu Yang, Hongshan Guo, Lu Yang... | \n", + "Nat Struct Mol Biol | \n", + "Single-cell RNA-Seq profiling of human preimpl... | \n", + "2013-08-09 | \n", + "- | \n", + "124.0 | \n", + "Human | \n", + "Culture | \n", + "... | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
17 | \n", + "Islam et al NMeth | \n", + "10.1038/nmeth.2772 | \n", + "Saiful Islam, Amit Zeisel, Simon Joost, Gioele... | \n", + "Nat Methods | \n", + "Quantitative single-cell RNA-seq with unique m... | \n", + "2013-12-22 | \n", + "- | \n", + "192.0 | \n", + "Mouse | \n", + "Culture | \n", + "... | \n", + "No | \n", + "No | \n", + "NaN | \n", + "No | \n", + "No | \n", + "NaN | \n", + "IFC Capture | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
18 | \n", + "Deng et al Science | \n", + "10.1126/science.1245316 | \n", + "Q. Deng, D. Ramskold, B. Reinius, R. Sandberg | \n", + "Science | \n", + "Single-Cell RNA-Seq Reveals Dynamic, Random Mo... | \n", + "2014-01-09 | \n", + "- | \n", + "269.0 | \n", + "Mouse | \n", + "Embryo | \n", + "... | \n", + "No | \n", + "No | \n", + "No | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
19 | \n", + "Jaitin et al Science | \n", + "10.1126/science.1247651 | \n", + "D. A. Jaitin, E. Kenigsberg, H. Keren-Shaul, N... | \n", + "Science | \n", + "Massively Parallel Single-Cell RNA-Seq for Mar... | \n", + "2014-02-14 | \n", + "- | \n", + "4468.0 | \n", + "Mouse | \n", + "Spleen | \n", + "... | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "No | \n", + "No | \n", + "NaN | \n", + "Sorting (FACS) | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
20 | \n", + "Soumillon et al bioRxiv | \n", + "10.1101/003236 | \n", + "Magali Soumillon, Davide Cacchiarelli, Stefan ... | \n", + "bioRxiv | \n", + "Characterization of directed differentiation b... | \n", + "2014-03-10 | \n", + "10.1101/003236 | \n", + "12832.0 | \n", + "Human | \n", + "Culture | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
38 | \n", + "Fan et al Science | \n", + "10.1126/science.1258367 | \n", + "H. Christina Fan, Glenn K. Fu, Stephen P. A. F... | \n", + "Science | \n", + "Combinatorial labeling of single cells for gen... | \n", + "2015-02-05 | \n", + "- | \n", + "15000.0 | \n", + "Human | \n", + "Blood, Culture | \n", + "... | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "Yes | \n", + "No | \n", + "NaN | \n", + "Picowell deposition | \n", + "NaN | \n", + "2.0 | \n", + "True | \n", + "
48 | \n", + "Macosko et al Cell | \n", + "10.1016/j.cell.2015.05.002 | \n", + "Evan Z. Macosko, Anindita Basu, Rahul Satija, ... | \n", + "Cell | \n", + "Highly Parallel Genome-wide Expression Profili... | \n", + "2015-05-21 | \n", + "- | \n", + "44808.0 | \n", + "Human, Mouse | \n", + "Eye | \n", + "... | \n", + "Yes | \n", + "No | \n", + "No | \n", + "Yes | \n", + "Yes | \n", + "NaN | \n", + "Nanodroplet dilution | \n", + "SCP301 | \n", + "NaN | \n", + "True | \n", + "
160 | \n", + "Dixit et al Cell | \n", + "10.1016/j.cell.2016.11.038 | \n", + "Atray Dixit, Oren Parnas, Biyu Li, Jenny Chen,... | \n", + "Cell | \n", + "Perturb-Seq: Dissecting Molecular Circuits wit... | \n", + "2016-12-15 | \n", + "- | \n", + "200000.0 | \n", + "Human, Mouse | \n", + "Culture | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "No | \n", + "NaN | \n", + "Nanodroplet dilution | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
168 | \n", + "Zheng et al NComm | \n", + "10.1038/ncomms14049 | \n", + "Grace X. Y. Zheng, Jessica M. Terry, Phillip B... | \n", + "Nat Commun | \n", + "Massively parallel digital transcriptional pro... | \n", + "2017-01-16 | \n", + "10.1101/065912 | \n", + "250000.0 | \n", + "Human, Mouse | \n", + "Blood | \n", + "... | \n", + "Yes | \n", + "NaN | \n", + "NaN | \n", + "Yes | \n", + "Yes | \n", + "NaN | \n", + "Nanodroplet dilution | \n", + "NaN | \n", + "5.0 | \n", + "True | \n", + "
288 | \n", + "Han et al Cell | \n", + "10.1016/j.cell.2018.02.001 | \n", + "Xiaoping Han, Renying Wang, Yincong Zhou, Liji... | \n", + "Cell | \n", + "Mapping the Mouse Cell Atlas by Microwell-Seq | \n", + "2018-02-23 | \n", + "- | \n", + "400000.0 | \n", + "Mouse | \n", + "Bladder, Bone marrow, Brain, Kidney, Liver, Lu... | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
373 | \n", + "Saunders et al Cell | \n", + "10.1016/j.cell.2018.07.028 | \n", + "Arpiar Saunders, Evan Z. Macosko, Alec Wysoker... | \n", + "Cell | \n", + "Molecular Diversity and Specializations among ... | \n", + "2018-08-09 | \n", + "10.1101/299081 | \n", + "690000.0 | \n", + "Mouse | \n", + "Brain | \n", + "... | \n", + "Yes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "gs://h5ad/2018-08-Saunders-et-al-Cell | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
440 | \n", + "Schmeidel et al Cell | \n", + "10.1016/j.cell.2018.10.022 | \n", + "Benjamin J. Schmiedel, Divya Singh, Ariel Madr... | \n", + "Cell | \n", + "Impact of Genetic Polymorphisms on Human Immun... | \n", + "2018-11-15 | \n", + "NaN | \n", + "1000000.0 | \n", + "Human | \n", + "Blood | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "91.0 | \n", + "True | \n", + "
519 | \n", + "Cao et al Nature | \n", + "10.1038/s41586-019-0969-x | \n", + "Junyue Cao, Malte Spielmann, Xiaojie Qiu, Xing... | \n", + "Nature | \n", + "The single-cell transcriptional landscape of m... | \n", + "2019-02-20 | \n", + "- | \n", + "2058652.0 | \n", + "Mouse | \n", + "Embryo | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "https://storage.googleapis.com/h5ad/2019-02-Ca... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
549 | \n", + "Rodriques et al Science | \n", + "10.1126/science.aaw1219 | \n", + "Samuel G. Rodriques, Robert R. Stickels, Aleks... | \n", + "Science | \n", + "Slide-seq: A scalable technology for measuring... | \n", + "2019-03-28 | \n", + "10.1101/563395 | \n", + "2522640.0 | \n", + "Mouse | \n", + "Brain | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "https://storage.googleapis.com/h5ad/2019-03-Ro... | \n", + "Spatial RNA coordinates | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
1223 | \n", + "Cao et al Science | \n", + "10.1126/science.aba7721 | \n", + "Junyue Cao, Diana R. O’Day, Hannah A. Pliner, ... | \n", + "Science | \n", + "A human cell atlas of fetal gene expression | \n", + "2020-11-13 | \n", + "NaN | \n", + "4062980.0 | \n", + "Human | \n", + "Adrenal gland, Brain, Eye, Heart, Intestine, K... | \n", + "... | \n", + "Yes | \n", + "Yes | \n", + "No | \n", + "Yes | \n", + "No | \n", + "https://storage.googleapis.com/h5ad/10.1126-sc... | \n", + "NaN | \n", + "NaN | \n", + "121.0 | \n", + "True | \n", + "
1698 | \n", + "Langlieb et al bioRxiv | \n", + "10.1101/2023.03.06.531307 | \n", + "Jonah Langlieb, Nina Sachdev, Karol Balderrama... | \n", + "bioRxiv | \n", + "The cell type composition of the adult mouse b... | \n", + "2023-03-08 | \n", + "10.1101/2023.03.06.531307 | \n", + "4388420.0 | \n", + "Mouse | \n", + "Brain | \n", + "... | \n", + "Yes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
1701 | \n", + "Qiu et al bioRxiv | \n", + "10.1101/2023.04.05.535726 | \n", + "Chengxiang Qiu, Beth K. Martin, Ian C. Welsh, ... | \n", + "bioRxiv | \n", + "A single-cell transcriptional timelapse of mou... | \n", + "2023-04-06 | \n", + "10.1101/2023.04.05.535726 | \n", + "12400000.0 | \n", + "Mouse | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "
21 rows × 29 columns
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | \n", - "Tang et al NMeth | \n", - "10.1038/NMETH.1315 | \n", - "Fuchou Tang, Catalin Barbacioru, Yangzhou Wang... | \n", - "Nat Methods | \n", - "mRNA-Seq whole-transcriptome analysis of a sin... | \n", - "2009-04-06 | \n", - "- | \n", - "5.0 | \n", - "Mouse | \n", - "Oocyte | \n", - "... | \n", - "No | \n", - "No | \n", - "No | \n", - "No | \n", - "No | \n", - "NaN | \n", - "Pipetting (Manual picking) | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
1 | \n", - "Tang et al CSC | \n", - "10.1016/j.stem.2010.03.015 | \n", - "Fuchou Tang, Catalin Barbacioru, Siqin Bao, Ca... | \n", - "Cell Stem Cell | \n", - "Tracing the Derivation of Embryonic Stem Cells... | \n", - "2010-05-07 | \n", - "- | \n", - "34.0 | \n", - "Mouse | \n", - "Embryo | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "No | \n", - "Yes | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
2 | \n", - "Islam et al GR | \n", - "10.1101/gr.110882.110 | \n", - "S. Islam, U. Kjallquist, A. Moliner, P. Zajac,... | \n", - "Genome Research | \n", - "Characterization of the single-cell transcript... | \n", - "2011-05-05 | \n", - "- | \n", - "85.0 | \n", - "Mouse | \n", - "Culture | \n", - "... | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "Pipetting (Manual picking) | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
6 | \n", - "Hashimshony et al CR | \n", - "10.1016/j.celrep.2012.08.003 | \n", - "Tamar Hashimshony, Florian Wagner, Noa Sher, I... | \n", - "Cell Reports | \n", - "CEL-Seq: Single-Cell RNA-Seq by Multiplexed Li... | \n", - "2012-08-30 | \n", - "- | \n", - "96.0 | \n", - "C elegans | \n", - "Embryo | \n", - "... | \n", - "No | \n", - "No | \n", - "NaN | \n", - "No | \n", - "No | \n", - "NaN | \n", - "Pipetting (Manual picking) | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
11 | \n", - "Yan et al NSMB | \n", - "10.1038/nsmb.2660 | \n", - "Liying Yan, Mingyu Yang, Hongshan Guo, Lu Yang... | \n", - "Nat Struct Mol Biol | \n", - "Single-cell RNA-Seq profiling of human preimpl... | \n", - "2013-08-09 | \n", - "- | \n", - "124.0 | \n", - "Human | \n", - "Culture | \n", - "... | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
17 | \n", - "Islam et al NMeth | \n", - "10.1038/nmeth.2772 | \n", - "Saiful Islam, Amit Zeisel, Simon Joost, Gioele... | \n", - "Nat Methods | \n", - "Quantitative single-cell RNA-seq with unique m... | \n", - "2013-12-22 | \n", - "- | \n", - "192.0 | \n", - "Mouse | \n", - "Culture | \n", - "... | \n", - "No | \n", - "No | \n", - "NaN | \n", - "No | \n", - "No | \n", - "NaN | \n", - "IFC Capture | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
18 | \n", - "Deng et al Science | \n", - "10.1126/science.1245316 | \n", - "Q. Deng, D. Ramskold, B. Reinius, R. Sandberg | \n", - "Science | \n", - "Single-Cell RNA-Seq Reveals Dynamic, Random Mo... | \n", - "2014-01-09 | \n", - "- | \n", - "269.0 | \n", - "Mouse | \n", - "Embryo | \n", - "... | \n", - "No | \n", - "No | \n", - "No | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
19 | \n", - "Jaitin et al Science | \n", - "10.1126/science.1247651 | \n", - "D. A. Jaitin, E. Kenigsberg, H. Keren-Shaul, N... | \n", - "Science | \n", - "Massively Parallel Single-Cell RNA-Seq for Mar... | \n", - "2014-02-14 | \n", - "- | \n", - "4468.0 | \n", - "Mouse | \n", - "Spleen | \n", - "... | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "No | \n", - "No | \n", - "NaN | \n", - "Sorting (FACS) | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
20 | \n", - "Soumillon et al bioRxiv | \n", - "10.1101/003236 | \n", - "Magali Soumillon, Davide Cacchiarelli, Stefan ... | \n", - "bioRxiv | \n", - "Characterization of directed differentiation b... | \n", - "2014-03-10 | \n", - "10.1101/003236 | \n", - "12832.0 | \n", - "Human | \n", - "Culture | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
38 | \n", - "Fan et al Science | \n", - "10.1126/science.1258367 | \n", - "H. Christina Fan, Glenn K. Fu, Stephen P. A. F... | \n", - "Science | \n", - "Combinatorial labeling of single cells for gen... | \n", - "2015-02-05 | \n", - "- | \n", - "15000.0 | \n", - "Human | \n", - "Blood, Culture | \n", - "... | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "Yes | \n", - "No | \n", - "NaN | \n", - "Picowell deposition | \n", - "NaN | \n", - "2.0 | \n", - "True | \n", - "
48 | \n", - "Macosko et al Cell | \n", - "10.1016/j.cell.2015.05.002 | \n", - "Evan Z. Macosko, Anindita Basu, Rahul Satija, ... | \n", - "Cell | \n", - "Highly Parallel Genome-wide Expression Profili... | \n", - "2015-05-21 | \n", - "- | \n", - "44808.0 | \n", - "Human, Mouse | \n", - "Eye | \n", - "... | \n", - "Yes | \n", - "No | \n", - "No | \n", - "Yes | \n", - "Yes | \n", - "NaN | \n", - "Nanodroplet dilution | \n", - "SCP301 | \n", - "NaN | \n", - "True | \n", - "
160 | \n", - "Dixit et al Cell | \n", - "10.1016/j.cell.2016.11.038 | \n", - "Atray Dixit, Oren Parnas, Biyu Li, Jenny Chen,... | \n", - "Cell | \n", - "Perturb-Seq: Dissecting Molecular Circuits wit... | \n", - "2016-12-15 | \n", - "- | \n", - "200000.0 | \n", - "Human, Mouse | \n", - "Culture | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "No | \n", - "NaN | \n", - "Nanodroplet dilution | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
168 | \n", - "Zheng et al NComm | \n", - "10.1038/ncomms14049 | \n", - "Grace X. Y. Zheng, Jessica M. Terry, Phillip B... | \n", - "Nat Commun | \n", - "Massively parallel digital transcriptional pro... | \n", - "2017-01-16 | \n", - "10.1101/065912 | \n", - "250000.0 | \n", - "Human, Mouse | \n", - "Blood | \n", - "... | \n", - "Yes | \n", - "NaN | \n", - "NaN | \n", - "Yes | \n", - "Yes | \n", - "NaN | \n", - "Nanodroplet dilution | \n", - "NaN | \n", - "5.0 | \n", - "True | \n", - "
288 | \n", - "Han et al Cell | \n", - "10.1016/j.cell.2018.02.001 | \n", - "Xiaoping Han, Renying Wang, Yincong Zhou, Liji... | \n", - "Cell | \n", - "Mapping the Mouse Cell Atlas by Microwell-Seq | \n", - "2018-02-23 | \n", - "- | \n", - "400000.0 | \n", - "Mouse | \n", - "Bladder, Bone marrow, Brain, Kidney, Liver, Lu... | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
373 | \n", - "Saunders et al Cell | \n", - "10.1016/j.cell.2018.07.028 | \n", - "Arpiar Saunders, Evan Z. Macosko, Alec Wysoker... | \n", - "Cell | \n", - "Molecular Diversity and Specializations among ... | \n", - "2018-08-09 | \n", - "10.1101/299081 | \n", - "690000.0 | \n", - "Mouse | \n", - "Brain | \n", - "... | \n", - "Yes | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "gs://h5ad/2018-08-Saunders-et-al-Cell | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
440 | \n", - "Schmeidel et al Cell | \n", - "10.1016/j.cell.2018.10.022 | \n", - "Benjamin J. Schmiedel, Divya Singh, Ariel Madr... | \n", - "Cell | \n", - "Impact of Genetic Polymorphisms on Human Immun... | \n", - "2018-11-15 | \n", - "NaN | \n", - "1000000.0 | \n", - "Human | \n", - "Blood | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "91.0 | \n", - "True | \n", - "
519 | \n", - "Cao et al Nature | \n", - "10.1038/s41586-019-0969-x | \n", - "Junyue Cao, Malte Spielmann, Xiaojie Qiu, Xing... | \n", - "Nature | \n", - "The single-cell transcriptional landscape of m... | \n", - "2019-02-20 | \n", - "- | \n", - "2058652.0 | \n", - "Mouse | \n", - "Embryo | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "https://storage.googleapis.com/h5ad/2019-02-Ca... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
549 | \n", - "Rodriques et al Science | \n", - "10.1126/science.aaw1219 | \n", - "Samuel G. Rodriques, Robert R. Stickels, Aleks... | \n", - "Science | \n", - "Slide-seq: A scalable technology for measuring... | \n", - "2019-03-28 | \n", - "10.1101/563395 | \n", - "2522640.0 | \n", - "Mouse | \n", - "Brain | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "https://storage.googleapis.com/h5ad/2019-03-Ro... | \n", - "Spatial RNA coordinates | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
1223 | \n", - "Cao et al Science | \n", - "10.1126/science.aba7721 | \n", - "Junyue Cao, Diana R. O’Day, Hannah A. Pliner, ... | \n", - "Science | \n", - "A human cell atlas of fetal gene expression | \n", - "2020-11-13 | \n", - "NaN | \n", - "4062980.0 | \n", - "Human | \n", - "Adrenal gland, Brain, Eye, Heart, Intestine, K... | \n", - "... | \n", - "Yes | \n", - "Yes | \n", - "No | \n", - "Yes | \n", - "No | \n", - "https://storage.googleapis.com/h5ad/10.1126-sc... | \n", - "NaN | \n", - "NaN | \n", - "121.0 | \n", - "True | \n", - "
1698 | \n", - "Langlieb et al bioRxiv | \n", - "10.1101/2023.03.06.531307 | \n", - "Jonah Langlieb, Nina Sachdev, Karol Balderrama... | \n", - "bioRxiv | \n", - "The cell type composition of the adult mouse b... | \n", - "2023-03-08 | \n", - "10.1101/2023.03.06.531307 | \n", - "4388420.0 | \n", - "Mouse | \n", - "Brain | \n", - "... | \n", - "Yes | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
1701 | \n", - "Qiu et al bioRxiv | \n", - "10.1101/2023.04.05.535726 | \n", - "Chengxiang Qiu, Beth K. Martin, Ian C. Welsh, ... | \n", - "bioRxiv | \n", - "A single-cell transcriptional timelapse of mou... | \n", - "2023-04-06 | \n", - "10.1101/2023.04.05.535726 | \n", - "12400000.0 | \n", - "Mouse | \n", - "NaN | \n", - "... | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "NaN | \n", - "True | \n", - "
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