diff --git a/.github/releases/rnasum-pipeline__1.0.0__20240627060107/workflow.svg b/.github/releases/rnasum-pipeline__1.0.0__20240627060107/workflow.svg new file mode 100644 index 00000000..4d9e8869 --- /dev/null +++ b/.github/releases/rnasum-pipeline__1.0.0__20240627060107/workflow.svg @@ -0,0 +1,437 @@ + + + + + + +G + + +cluster_inputs + +Workflow Inputs + + +cluster_outputs + +Workflow Outputs + + + +arriba_dir + +arriba_dir + + + +run_rnasum_step + +run_rnasum_step + + + +arriba_dir->run_rnasum_step + + + + + +arriba_pdf + +arriba_pdf + + + +arriba_pdf->run_rnasum_step + + + + + +arriba_tsv + +arriba_tsv + + + +arriba_tsv->run_rnasum_step + + + + + +batch_rm + +batch_rm + + + +batch_rm->run_rnasum_step + + + + + +cn_gain + +cn_gain + + + +cn_gain->run_rnasum_step + + + + + +cn_loss + +cn_loss + + + +cn_loss->run_rnasum_step + + + + + +dataset + +dataset + + + +dataset->run_rnasum_step + + + + + +dataset_name_incl + +dataset_name_incl + + + +dataset_name_incl->run_rnasum_step + + + + + +dragen_fusions + +dragen_fusions + + + +dragen_fusions->run_rnasum_step + + + + + +dragen_mapping_metrics + +dragen_mapping_metrics + + + +dragen_mapping_metrics->run_rnasum_step + + + + + +dragen_wts_dir + +dragen_wts_dir + + + +dragen_wts_dir->run_rnasum_step + + + + + +drugs + +drugs + + + +drugs->run_rnasum_step + + + + + +filter + +filter + + + +filter->run_rnasum_step + + + + + +immunogram + +immunogram + + + +immunogram->run_rnasum_step + + + + + +log + +log + + + +log->run_rnasum_step + + + + + +manta_tsv + +manta_tsv + + + +manta_tsv->run_rnasum_step + + + + + +norm + +norm + + + +norm->run_rnasum_step + + + + + +pcgr_splice_vars + +pcgr_splice_vars + + + +pcgr_splice_vars->run_rnasum_step + + + + + +pcgr_tier + +pcgr_tier + + + +pcgr_tier->run_rnasum_step + + + + + +pcgr_tiers_tsv + +pcgr_tiers_tsv + + + +pcgr_tiers_tsv->run_rnasum_step + + + + + +project + +project + + + +project->run_rnasum_step + + + + + +purple_gene_tsv + +purple_gene_tsv + + + +purple_gene_tsv->run_rnasum_step + + + + + +report_dir + +report_dir + + + +report_dir->run_rnasum_step + + + + + +salmon + +salmon + + + +salmon->run_rnasum_step + + + + + +sample_name + +sample_name + + + +sample_name->run_rnasum_step + + + + + +sample_source + +sample_source + + + +sample_source->run_rnasum_step + + + + + +save_tables + +save_tables + + + +save_tables->run_rnasum_step + + + + + +scaling + +scaling + + + +scaling->run_rnasum_step + + + + + +subject_id + +subject_id + + + +subject_id->run_rnasum_step + + + + + +top_genes + +top_genes + + + +top_genes->run_rnasum_step + + + + + +transform + +transform + + + +transform->run_rnasum_step + + + + + +umccrise + +umccrise + + + +umccrise->run_rnasum_step + + + + + +rnasum_html + +rnasum_html + + + +run_rnasum_step->rnasum_html + + + + + +rnasum_output_directory + +rnasum_output_directory + + + +run_rnasum_step->rnasum_output_directory + + + + +