Investigate schema warning

[alexiswl]

cwl-ica create-workflow-submission-template \
  --workflow-path "${CWL_ICA_REPO_PATH}/GitHub/UMCCR/cwl-ica/workflows/dragen-somatic-pipeline/3.9.3/dragen-somatic-pipeline__3.9.3.cwl" \
  --project development_workflows \
  --launch-project development \
  --prefix "tumor_bam_input_test" \
  --gds-prefix gds://development/temp/alexis/

Yields

2023-03-06 11:23:00,196 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 187  - Don't know what to do with key read_1
2023-03-06 11:23:00,197 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 188  - ordereddict([('label', 'read 1'), ('doc', 'The path to R1 of a sample\n'), ('type', ['File', 'string']), ('streamable', True)])
2023-03-06 11:23:00,197 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 196  - Expected a dict to be left for read_1
2023-03-06 11:23:00,197 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 197  - Got ordereddict([('label', 'read 1'), ('doc', 'The path to R1 of a sample\n'), ('type', ['File', 'string']), ('streamable', True)])
2023-03-06 11:23:00,216 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 187  - Don't know what to do with key read_1
2023-03-06 11:23:00,216 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 188  - ordereddict([('label', 'read 1'), ('doc', 'The path to R1 of a sample\n'), ('type', ['File', 'string']), ('streamable', True)])
2023-03-06 11:23:00,216 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 196  - Expected a dict to be left for read_1
2023-03-06 11:23:00,217 - WARNING  - cwl_schema                - get_sanitised_object                     : LineNo. 197  - Got ordereddict([('label', 'read 1'), ('doc', 'The path to R1 of a sample\n'), ('type', ['File', 'string']), ('streamable', True)])
2023-03-06 11:23:00,218 - INFO     - create_submission_template - __call__                                 : LineNo. 116  - Writing out input yaml file to tumor_bam_input_test.template.yaml
2023-03-06 11:23:00,249 - INFO     - create_submission_template - __call__                                 : LineNo. 123  - Writing wrapper script to tumor_bam_input_test.launch.sh