diff --git a/README.md b/README.md index 922e9de..115accc 100755 --- a/README.md +++ b/README.md @@ -371,7 +371,7 @@ dataset is used as reference cohort (`--dataset TEST`). rnasum.R \ --sample_name test_sample_WTS \ --dataset TEST \ - --dragen_rnaseq inst/rawdata/test_data/dragen \ + --dragen_wts_dir inst/rawdata/test_data/dragen \ --report_dir inst/rawdata/test_data/dragen/RNAsum \ --umccrise inst/rawdata/test_data/umccrised/test_sample_WGS \ --save_tables FALSE @@ -396,7 +396,7 @@ pancreatic adenocarcinoma dataset is used as the reference cohort rnasum.R \ --sample_name test_sample_WTS \ --dataset TEST \ - --dragen_rnaseq inst/rawdata/test_data/dragen \ + --dragen_wts_dir inst/rawdata/test_data/dragen \ --report_dir inst/rawdata/test_data/dragen/RNAsum \ --save_tables FALSE ``` @@ -422,7 +422,7 @@ dataset is used as the reference cohort (`--dataset TEST`). rnasum.R \ --sample_name test_sample_WTS \ --dataset TEST \ - --dragen_rnaseq $(pwd)/../rawdata/test_data/dragen \ + --dragen_wts_dir $(pwd)/../rawdata/test_data/dragen \ --report_dir $(pwd)/../rawdata/test_data/dragen/RNAsum \ --umccrise $(pwd)/../rawdata/test_data/umccrised/test_sample_WGS \ --save_tables FALSE \