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Makefile
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# Fuzzingbook/Debuggingbook Makefile
# HINT: This Makefile has hundreds of goals. The most important are:
# * To see the most important goals, do "make help"
# * To build the book HTML (in html/), do "make"
# * To build the book with all components (in docs/), do "make docs"
# This Makefile requires GNU make.
# Get chapter files
CHAPTERS_MAKEFILE = Chapters.makefile
include $(CHAPTERS_MAKEFILE)
# All source notebooks
SOURCE_FILES = \
$(FRONTMATTER) \
$(CHAPTERS) \
$(APPENDICES) \
$(EXTRAS)
# The bibliography file
BIB = fuzzingbook.bib
# The utilities folder
UTILS = bookutils
# The utilities in $(UTILS)
UTILITY_FILES = \
__init__.py \
PrettyTable.py \
README.md \
import_notebooks.py \
setup.py
# Where the notebooks are
NOTEBOOKS = notebooks
# Where the shared files are
SHARED = notebooks/shared/
# Derived versions including HTML, SVG, and text output cells (for Web)
FULL_NOTEBOOKS = full_notebooks
# Derived versions including PNG and text output cells,
# but without excursions (for LaTeX and PDF)
RENDERED_NOTEBOOKS = rendered
# Git repo
GITHUB_REPO = https://github.com/uds-se/$(PROJECT)/
BINDER_URL = https://mybinder.org/v2/gh/uds-se/$(PROJECT)/HEAD?labpath=docs/beta/notebooks/00_Table_of_Contents.ipynb
PROJECT_URL = https://www.$(PROJECT).org/beta/
# Sources in the notebooks folder
SOURCES = $(SOURCE_FILES:%=$(NOTEBOOKS)/%)
CHAPTER_SOURCES = $(CHAPTERS:%=$(NOTEBOOKS)/%)
ALL_CHAPTER_SOURCES = $(CHAPTERS:%=$(NOTEBOOKS)/%)
PUBLIC_SOURCES = $(PUBLIC_CHAPTERS:%=$(NOTEBOOKS)/%)
READY_SOURCES = $(READY_CHAPTERS:%=$(NOTEBOOKS)/%)
TODO_SOURCES = $(TODO_CHAPTERS:%=$(NOTEBOOKS)/%)
NEW_SOURCES = $(NEW_CHAPTERS:%=$(NOTEBOOKS)/%)
APPENDICES_SOURCES = $(APPENDICES:%=$(NOTEBOOKS)/%)
# Where to place the pdf, html, slides
PDF_TARGET = pdf/
NBPDF_TARGET = nbpdf/
HTML_TARGET = html/
SLIDES_TARGET = slides/
CODE_TARGET = code/
MYPY_TARGET = mypy/
MARKDOWN_TARGET = markdown/
WORD_TARGET = word/
EPUB_TARGET = epub/
DEPEND_TARGET = .depend/
DOCS_TARGET = docs/
# If BETA=y, we create files in the "beta" subdir. Use 'make docs-beta', 'make html-beta' to invoke
ifdef BETA
DOCS_TARGET := docs/beta/
HTML_TARGET := beta/$(HTML_TARGET)
SLIDES_TARGET := beta/$(SLIDES_TARGET)
CODE_TARGET := beta/$(CODE_TARGET)
BETA_FLAG = --include-ready --include-todo
endif
ifndef BETA
# Avoid warning: undefined variable `BETA_FLAG'
BETA_FLAG =
endif
# Files to appear in the table of contents
ifndef BETA
CHAPTER_SOURCES := $(PUBLIC_CHAPTERS:%=$(NOTEBOOKS)/%)
endif
ifdef BETA
PUBLIC_CHAPTERS := $(CHAPTERS)
endif
TOC_CHAPTERS := $(PUBLIC_CHAPTERS)
TOC_APPENDICES = $(APPENDICES)
# Files to appear on the Web page
DOCS = \
$(FRONTMATTER:%.ipynb=%) \
$(TOC_CHAPTERS:%.ipynb=%) \
$(APPENDICES:%.ipynb=%) \
$(EXTRAS:%.ipynb=%)
# Various derived files
TEXS = $(SOURCE_FILES:%.ipynb=$(PDF_TARGET)%.tex)
PDFS = $(SOURCE_FILES:%.ipynb=$(PDF_TARGET)%.pdf)
NBPDFS = $(SOURCE_FILES:%.ipynb=$(NBPDF_TARGET)%.pdf)
HTMLS = $(SOURCE_FILES:%.ipynb=$(HTML_TARGET)%.html)
SLIDES = $(SOURCE_FILES:%.ipynb=$(SLIDES_TARGET)%.slides.html)
PYS = $(SOURCE_FILES:%.ipynb=$(CODE_TARGET)%.py) \
$(CODE_TARGET)setup.py \
$(CODE_TARGET)__init__.py
MYPYS = $(SOURCE_FILES:%.ipynb=$(MYPY_TARGET)%.py)
WORDS = $(SOURCE_FILES:%.ipynb=$(WORD_TARGET)%.docx)
MARKDOWNS = $(SOURCE_FILES:%.ipynb=$(MARKDOWN_TARGET)%.md)
EPUBS = $(SOURCE_FILES:%.ipynb=$(EPUB_TARGET)%.epub)
FULLS = $(FULL_NOTEBOOKS)/$(UTILS) \
$(UTILITY_FILES:%=$(FULL_NOTEBOOKS)/$(UTILS)/%) \
$(SOURCE_FILES:%.ipynb=$(FULL_NOTEBOOKS)/%.ipynb)
RENDERS = $(SOURCE_FILES:%.ipynb=$(RENDERED_NOTEBOOKS)/%.ipynb)
DEPENDS = $(SOURCE_FILES:%.ipynb=$(DEPEND_TARGET)%.makefile)
CHAPTER_PYS = $(CHAPTERS:%.ipynb=$(CODE_TARGET)%.py)
PDF_FILES = $(SOURCE_FILES:%.ipynb=$(PDF_TARGET)%_files)
NBPDF_FILES = $(SOURCE_FILES:%.ipynb=$(NBPDF_TARGET)%_files)
HTML_FILES = $(SOURCE_FILES:%.ipynb=$(HTML_TARGET)%_files)
SLIDES_FILES = $(SOURCE_FILES:%.ipynb=$(SLIDES_TARGET)%_files)
SITEMAP_SVG = $(NOTEBOOKS)/PICS/Sitemap.svg
# Configuration
# The site
SITE = https://www.$(PROJECT).org
# What we use for production: nbpublish (preferred), bookbook, or nbconvert
PUBLISH ?= nbpublish
# What we use for LaTeX: latexmk (preferred), or pdflatex
LATEX ?= latexmk
## Tools
# Python
PYTHON ?= python3
# Python warning level
# Turn warnings into errors unless we're in C
ifeq ($(origin CI),environment)
PYTHON_WARNLEVEL =
else
PYTHON_WARNLEVEL = -W error
endif
# Jupyter
JUPYTER ?= jupyter
# The nbpublish tool (preferred; https://github.com/chrisjsewell/ipypublish)
# (see nbpublish -h for details)
NBPUBLISH ?= \
PYTHONPATH=$(SHARED) $(PYTHON) $(SHARED)bin/nbpublish
NBPUBLISH_OPTIONS ?= -log warning
# The bookbook tool (okay for chapters and books; but no citations yet)
# https://github.com/takluyver/bookbook
BOOKBOOK_LATEX ?= $(PYTHON) -m bookbook.latex
BOOKBOOK_HTML ?= $(PYTHON) -m bookbook.html
# The nbconvert alternative (okay for chapters; doesn't work for book; no citations)
NBCONVERT ?= $(JUPYTER) nbconvert
NBCONVERT_OPTIONS ?= --log-level=WARN
# Notebook merger
NBMERGE = $(PYTHON) utils/nbmerge.py
# LaTeX
PDFLATEX ?= pdflatex
XELATEX ?= xelatex
BIBTEX ?= bibtex
LATEXMK ?= latexmk
LATEXMK_OPTS ?= -xelatex -quiet -f -interaction=nonstopmode
# Word
PANDOC ?= pandoc
# Markdown (see https://github.com/aaren/notedown)
NOTEDOWN ?= notedown
# Style checks
PYCODESTYLE ?= pycodestyle
PYCODESTYLE_CFG = code/pycodestyle.cfg
AUTOPEP8 ?= autopep8
AUTOPEP8_CFG = code/autopep8.cfg
AUTOPEP8_OPTIONS = --global-config $(AUTOPEP8_CFG) --aggressive --in-place
NBAUTOPEP8 = $(PYTHON) utils/nbautopep8.py
# Program to open files after creating, say OPEN=open (default: ignore; "true" does nothing)
OPEN ?= true
# Make directory
MKDIR = mkdir -p
ifndef PUBLISH
# Determine publishing program
OUT := $(shell which $(NBPUBLISH) > /dev/null && echo yes)
ifeq ($(OUT),yes)
# We have nbpublish
PUBLISH = nbpublish
else
# Issue a warning message
OUT := $(shell $(NBPUBLISH) -h > /dev/null)
# We have nbconvert
PUBLISH = nbconvert
PUBLISH_PLUGINS =
endif
endif
ifndef LATEX
# Determine publishing program
OUT := $(shell which $(LATEXMK) > /dev/null && echo yes)
ifeq ($(OUT),yes)
# We have latexmk
LATEX = $(LATEXMK)
else
# Issue a warning message
OUT := $(shell $(LATEXMK) -h > /dev/null)
# We have pdflatex
LATEX = $(PDFLATEX)
endif
endif
# Book base name
BOOK = $(PROJECT)
ifeq ($(PUBLISH),bookbook)
# Use bookbook
CONVERT_TO_HTML = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to html --output-dir=$(HTML_TARGET)
CONVERT_TO_TEX = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to latex --template $(PROJECT).tplx --output-dir=$(PDF_TARGET)
BOOK_TEX = $(PDF_TARGET)$(BOOK).tex
BOOK_PDF = $(PDF_TARGET)$(BOOK).pdf
BOOK_HTML = $(HTML_TARGET)$(BOOK).html
BOOK_HTML_FILES = $(HTML_TARGET)$(BOOK)_files
BOOK_PDF_FILES = $(PDF_TARGET)$(BOOK)_files
PUBLISH_PLUGINS =
else
ifeq ($(PUBLISH),nbpublish)
# Use nbpublish
CONVERT_TO_HTML = $(NBPUBLISH) $(NBPUBLISH_OPTIONS) -f html_ipypublish_chapter --outpath $(HTML_TARGET)
CONVERT_TO_TEX = $(NBPUBLISH) $(NBPUBLISH_OPTIONS) -f latex_ipypublish_chapter --outpath $(PDF_TARGET)
# CONVERT_TO_SLIDES = $(NBPUBLISH) $(NBPUBLISH_OPTIONS) -f slides_ipypublish_all --outpath $(SLIDES_TARGET)
BOOK_TEX = $(PDF_TARGET)$(BOOK).tex
BOOK_PDF = $(PDF_TARGET)$(BOOK).pdf
BOOK_HTML = $(HTML_TARGET)$(BOOK).html
BOOK_HTML_FILES = $(HTML_TARGET)$(BOOK)_files
BOOK_PDF_FILES = $(PDF_TARGET)$(BOOK)_files
PUBLISH_PLUGINS = \
ipypublish_plugins/html_ipypublish_chapter.py \
ipypublish_plugins/latex_ipypublish_book.py \
ipypublish_plugins/latex_ipypublish_chapter.py
else
# Use standard Jupyter tools
CONVERT_TO_HTML = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to html --output-dir=$(HTML_TARGET)
CONVERT_TO_TEX = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to latex --template $(PROJECT).tplx --output-dir=$(PDF_TARGET)
# CONVERT_TO_SLIDES = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to slides --output-dir=$(SLIDES_TARGET)
BOOK_TEX =
BOOK_PDF =
BOOK_HTML =
BOOK_HTML_FILES =
BOOK_PDF_FILES =
PUBLISH_PLUGINS =
endif
endif
# For Python, we use our own script that takes care of distinguishing
# main (script) code from definitions to be imported
CONVERT_TO_PYTHON = PYTHONPATH=notebooks:$$PYTHONPATH \
$(PYTHON) $(EXPORT_NOTEBOOK_CODE)
# This would be the Jupyter alternative
# CONVERT_TO_PYTHON = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to python --output-dir=$(CODE_TARGET)
# For slides, we use the standard Jupyter tools
# Main reason: Jupyter has a neat interface to control slides/sub-slides/etc
CONVERT_TO_SLIDES = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to slides --output-dir=$(SLIDES_TARGET)
REVEAL_JS = $(SLIDES_TARGET)reveal.js
# For Word .docx files, we start from the HTML version
CONVERT_TO_WORD = $(PANDOC)
# For Markdown .md files, we use markdown
# Note: adding --run re-executes all code
# CONVERT_TO_MARKDOWN = $(NOTEDOWN) --to markdown
CONVERT_TO_MARKDOWN = $(NBCONVERT) $(NBCONVERT_OPTIONS) --to markdown --output-dir=$(MARKDOWN_TARGET)
# Run
# fuzzingbook/WhenToStopFuzzing needs about 120 seconds to render
# debuggingbook/Tracing may need up to 10 minutes
EXECUTE_TIMEOUT ?= 140
EXECUTE_OPTIONS ?= --ExecutePreprocessor.timeout=$(EXECUTE_TIMEOUT)
EXECUTE_NOTEBOOK = $(TIME) $(NBCONVERT) $(NBCONVERT_OPTIONS) $(EXECUTE_OPTIONS) --to notebook --execute --output-dir=$(FULL_NOTEBOOKS)
# Render
RENDER_NOTEBOOK = RENDER_HTML=1 $(NBCONVERT) $(NBCONVERT_OPTIONS) $(EXECUTE_OPTIONS) --to notebook --execute --output-dir=$(RENDERED_NOTEBOOKS)
# Refresh browser after re-creating html
REFRESH_HTML = \
osascript -e 'tell application "Safari" to set URL of document of window 1 to URL of document of window 1'
# Zip
ZIP ?= zip
ZIP_OPTIONS = -r
# Short targets
# Default target is to build everything needed for publishing,
# such that we can run "make -k" in a loop
.PHONY: chapters web default
web default: setup html code test-types test-code test-imports test-packages slides
chapters: html
# The book is recreated after any change to any source
.PHONY: book all and more
book $(PROJECT): book-html book-pdf
all: chapters pdf code slides book
and more: word markdown epub
# Individual targets
.PHONY: html pdf python code slides word doc docx md markdown epub
.PHONY: full-notebooks check-notebooks full fulls rendered-notebooks rendered renders refresh book-pdf book-html
html: ipypublish-chapters $(HTMLS)
pdf: ipypublish-chapters $(PDFS)
nbpdf: ipypublish-chapters $(NBPDFS)
python code: $(PYS)
slides: $(SLIDES)
word doc docx: $(WORDS)
md markdown: $(MARKDOWNS)
epub: $(EPUBS)
full-notebooks check-notebooks full fulls: $(FULLS)
rendered-notebooks rendered renders: $(RENDERS)
refresh: html
$(REFRESH_HTML)
book-pdf $(PROJECT)-pdf: ipypublish-book $(BOOK_PDF)
book-html $(PROJECT)-html: ipypublish-book $(BOOK_HTML)
.PHONY: ipypublish-book ipypublish-chapters
ifeq ($(PUBLISH),bookbook)
ipypublish-book:
ipypublish-chapters:
else
ifeq ($(PUBLISH),nbpublish)
ipypublish-book:
ipypublish-chapters:
else
ipypublish-book:
@echo "To create the book, you need the 'nbpublish' program."
@echo "This is part of the 'ipypublish' package"
@echo "at https://github.com/chrisjsewell/ipypublish"
ipypublish-chapters:
@echo "Warning: Using '$(NBCONVERT)' instead of '$(NBPUBLISH)'"
@echo "Documents will be created without citations and references"
@echo "Install the 'ipypublish' package"
@echo "from https://github.com/chrisjsewell/ipypublish"
endif
endif
.PHONY: edit jupyter lab notebook
# Invoke notebook and editor: `make jupyter lab`
edit notebook:
$(JUPYTER) notebook
lab:
$(JUPYTER) lab
jupyter:
# Help
.PHONY: help
help:
@echo "Welcome to the '$(PROJECT)' Makefile!"
@echo ""
@echo "* make chapters (default) -> HTML and code for all chapters (notebooks)"
@echo "* make (pdf|html|code|slides|word|markdown) -> given subcategory only"
@echo "* make book -> entire book in PDF and HTML"
@echo "* make all -> all inputs in all output formats"
@echo "* make reformat -> reformat notebook Python code according to PEP8 guidelines"
@echo "* make style -> style checker"
@echo "* make crossref -> cross reference checker"
@echo "* make stats -> report statistics"
@echo "* make clean -> delete all derived files"
@echo ""
@echo "Created files end here:"
@echo "* PDFs -> '$(PDF_TARGET)', HTML -> '$(HTML_TARGET)', Python code -> '$(CODE_TARGET)', Slides -> '$(SLIDES_TARGET)'"
@echo "* Web site files -> '$(DOCS_TARGET)'"
@echo ""
@echo "Publish:"
@echo "* make docs -> Create public version of current documents"
@echo "* make beta -> Create beta version of current documents"
@echo "* make publish-all -> Add docs to git, preparing for publication"
@echo ""
@echo "Settings:"
@echo "* Use make PUBLISH=(nbconvert|nbpublish|bookbook) to choose a converter"
@echo " (default: automatic)"
# Setup repo
.PHONY: setup
setup: .gitignore
.gitignore: shared/gitignore
$(RM) $@
cp $< $@
# Run a notebook, (re)creating all output cells
ADD_METADATA = $(SHARED)utils/add_metadata.py
NBAUTOSLIDE = $(SHARED)utils/nbautoslide.py
NBSYNOPSIS = $(SHARED)utils/nbsynopsis.py
NBSHORTEN = $(SHARED)utils/nbshorten.py
EXPORT_NOTEBOOK_CODE = $(SHARED)utils/export_notebook_code.py
# Commit new synopsis pics after a change (not during CI)
ifeq ($(origin CI),environment)
COMMIT_SYNOPSIS =
else
# COMMIT_SYNOPSIS = -git commit -m "Update synopsis" $(NOTEBOOKS)/PICS/*synopsis*
COMMIT_SYNOPSIS =
endif
# These notebooks can't be run under CI, as they interact with Firefox
# So we simply copy them instead
ifeq ($(origin CI),environment)
$(FULL_NOTEBOOKS)/Tracking.ipynb: $(NOTEBOOKS)/Tracking.ipynb
cp -r $< $@
$(FULL_NOTEBOOKS)/GUIFuzzer.ipynb: $(NOTEBOOKS)/GUIFuzzer.ipynb
cp -r $< $@
$(FULL_NOTEBOOKS)/FuzzingInTheLarge.ipynb: $(NOTEBOOKS)/FuzzingInTheLarge.ipynb
cp -r $< $@
endif
$(FULL_NOTEBOOKS)/%.ipynb: $(NOTEBOOKS)/%.ipynb $(DEPEND_TARGET)%.makefile $(ADD_METADATA) $(NBAUTOSLIDE) $(NBSYNOPSIS)
$(EXECUTE_NOTEBOOK) $< || $(EXECUTE_NOTEBOOK) $<
$(PYTHON) $(ADD_METADATA) --project $(PROJECT) $@ > $@~ && mv $@~ $@
$(PYTHON) $(NBAUTOSLIDE) --in-place $@
$(PYTHON) $(NBSYNOPSIS) --project $(PROJECT) --update $@
$(COMMIT_SYNOPSIS)
$(RENDERED_NOTEBOOKS)/%.ipynb: $(NOTEBOOKS)/%.ipynb \
$(DEPEND_TARGET)%.makefile $(ADD_METADATA) $(NBAUTOSLIDE) \
$(NBSYNOPSIS) $(NBSHORTEN) $(SHARED)$(UTILS)/__init__.py
$(RENDER_NOTEBOOK) $< || $(RENDER_NOTEBOOK) $<
$(PYTHON) $(ADD_METADATA) --project $(PROJECT) $@ > $@~ && mv $@~ $@
$(PYTHON) $(NBAUTOSLIDE) --in-place $@
RENDER_HTML=1 $(PYTHON) $(NBSYNOPSIS) --project $(PROJECT) --update $@
$(COMMIT_SYNOPSIS)
$(PYTHON) $(NBSHORTEN) --link-to "$(SITE)/html/" --in-place $@
$(FULL_NOTEBOOKS)/$(UTILS):
$(MKDIR) $(FULL_NOTEBOOKS)/$(UTILS)
$(FULL_NOTEBOOKS)/$(UTILS)/%: $(SHARED)$(UTILS)/%
@test -d $(FULL_NOTEBOOKS)/$(UTILS) || \
$(MKDIR) $(FULL_NOTEBOOKS)/$(UTILS)
cp -r $< $@
# Conversion rules - chapters
ifeq ($(LATEX),pdflatex)
# Use PDFLaTeX
$(PDF_TARGET)%.pdf: $(PDF_TARGET)%.tex $(BIB)
@echo Running LaTeX...
@-test -L $(PDF_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(PDF_TARGET)
cd $(PDF_TARGET) && $(PDFLATEX) $*
-cd $(PDF_TARGET) && $(BIBTEX) $*
cd $(PDF_TARGET) && $(PDFLATEX) $*
cd $(PDF_TARGET) && $(PDFLATEX) $*
@cd $(PDF_TARGET) && $(RM) $*.aux $*.bbl $*.blg $*.log $*.out $*.toc $*.frm $*.lof $*.lot $*.fls
@cd $(PDF_TARGET) && $(RM) -r $*_files
@echo Created $@
@$(OPEN) $@
else
# Use LaTeXMK
$(PDF_TARGET)%.pdf: $(PDF_TARGET)%.tex $(BIB)
@echo Running LaTeXMK...
@-test -L $(PDF_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(PDF_TARGET)
cd $(PDF_TARGET) && $(LATEXMK) $(LATEXMK_OPTS) $*
@cd $(PDF_TARGET) && $(RM) $*.aux $*.bbl $*.blg $*.log $*.out $*.toc $*.frm $*.lof $*.lot $*.fls $*.fdb_latexmk $*.xdv
@echo Created $@
@$(OPEN) $@
endif
# Keep the .tex files
.PRECIOUS: $(PDF_TARGET)%.tex
POST_TEX = utils/post_tex
$(PDF_TARGET)%.tex: $(RENDERED_NOTEBOOKS)/%.ipynb $(BIB) $(PUBLISH_PLUGINS) $(SHARED)$(ADD_METADATA) $(SHARED)$(POST_TEX)
$(eval TMPDIR := $(shell mktemp -d))
$(PYTHON) $(ADD_METADATA) --project $(PROJECT) --titlepage $< > $(TMPDIR)/$(notdir $<)
cp -r $(NOTEBOOKS)/PICS $(BIB) $(TMPDIR)
$(CONVERT_TO_TEX) $(TMPDIR)/$(notdir $<)
$(POST_TEX) $@ > $@~ && mv $@~ $@
@-$(RM) -fr $(TMPDIR)
@cd $(PDF_TARGET) && $(RM) $*.nbpub.log
# The psot-html.py script
POST_HTML ?= $(SHARED)utils/post_html.py
# Its options
POST_HTML_OPTIONS = $(BETA_FLAG) \
--project="$(PROJECT)" \
--title="$(BOOKTITLE)" \
--authors="$(AUTHORS)" \
--twitter="$(TWITTER)" \
--mastodon="$(MASTODON)" \
--all-chapters="$(ALL_CHAPTER_SOURCES) $(APPENDICES_SOURCES)" \
--public-chapters="$(CHAPTER_SOURCES) $(APPENDICES_SOURCES)" \
--ready-chapters="$(READY_SOURCES)" \
--todo-chapters="$(TODO_SOURCES)" \
--new-chapters="$(NEW_SOURCES)"
HTML_DEPS = $(BIB) $(PUBLISH_PLUGINS) $(POST_HTML) \
$(CHAPTERS_MAKEFILE) $(BIBCHECK)
# Check bib
BIBER = biber
BIBCHECK = .$(BIB).ascii .$(BIB).python .$(BIB).biber
checkbib check-bib: $(BIBCHECK)
@echo "Check completed; $(BIB) is ok"
check-bib-ascii: .$(BIB).ascii
.$(BIB).ascii: $(BIB)
@echo "Checking $(BIB) for 7-bit ASCII encoding"
@if grep -Hn '[^[:print:]]' fuzzingbook.bib; then false; fi
@touch $@
check-bib-python: .$(BIB).python
.$(BIB).python: $(BIB)
@echo "Checking $(BIB) for Python usage with bibtexparser"
@$(PYTHON) -c 'import bibtexparser; fd = open("$(BIB)"); bibtexparser.load(fd); fd.close()'
@touch $@
check-bib-biber: .$(BIB).biber
.$(BIB).biber: $(BIB)
@echo "Checking $(BIB) for LaTeX usage with Biber"
@if which $(BIBER) > /dev/null; then $(BIBER) --tool --validate-datamodel --quiet $(BIB); else :; fi
@$(RM) fuzzingbook_bibertool.bib fuzzingbook.bib.blg
@touch .$(BIB).biber
.PHONY: checkbib check-bib check-bib-ascii check-bib-python check-bib-biber
# index.html comes with relative links (html/) such that the beta version gets the beta menu
$(DOCS_TARGET)index.html: \
$(FULL_NOTEBOOKS)/index.ipynb $(HTML_DEPS)
@test -d $(DOCS_TARGET) || $(MKDIR) $(DOCS_TARGET)
@test -d $(HTML_TARGET) || $(MKDIR) $(HTML_TARGET)
$(CONVERT_TO_HTML) $<
mv $(HTML_TARGET)index.html $@
@cd $(HTML_TARGET) && $(RM) -r index.nbpub.log index_files
@$(PYTHON) $(POST_HTML) --menu-prefix=html/ --home $(POST_HTML_OPTIONS)$(HOME_POST_HTML_OPTIONS) $@
@$(OPEN) $@
# 404.html comes with absolute links (/html/) such that it works anywhare
# https://help.github.com/articles/creating-a-custom-404-page-for-your-github-pages-site/
$(DOCS_TARGET)404.html: $(FULL_NOTEBOOKS)/404.ipynb $(HTML_DEPS)
@test -d $(DOCS_TARGET) || $(MKDIR) $(DOCS_TARGET)
@test -d $(HTML_TARGET) || $(MKDIR) $(HTML_TARGET)
$(CONVERT_TO_HTML) $<
mv $(HTML_TARGET)404.html $@
@cd $(HTML_TARGET) && $(RM) -r 404.nbpub.log 404_files
@$(PYTHON) $(POST_HTML) --menu-prefix=/html/ --home $(POST_HTML_OPTIONS) $@
(echo '---'; echo 'permalink: /404.html'; echo '---'; cat $@) > $@~ && mv $@~ $@
@$(OPEN) $@
$(DOCS_TARGET)html/00_Index.html: \
$(DOCS_TARGET)notebooks/00_Index.ipynb $(HTML_DEPS)
$(CONVERT_TO_HTML) $<
@cd $(HTML_TARGET) && $(RM) -r 00_Index.nbpub.log 00_Index_files
@cd $(DOCS_TARGET)html && $(RM) -r 00_Index.nbpub.log 00_Index_files
mv $(HTML_TARGET)00_Index.html $@
@$(PYTHON) $(POST_HTML) $(POST_HTML_OPTIONS) $@
$(DOCS_TARGET)html/00_Table_of_Contents.html: \
$(DOCS_TARGET)notebooks/00_Table_of_Contents.ipynb \
$(SITEMAP_SVG) $(HTML_DEPS) $(NBTOC)
$(CONVERT_TO_HTML) $<
@cd $(HTML_TARGET) && $(RM) -r 00_Table_of_Contents.nbpub.log 00_Table_of_Contents_files
@cd $(DOCS_TARGET)html && $(RM) -r 00_Table_of_Contents.nbpub.log 00_Table_of_Contents_files
mv $(HTML_TARGET)00_Table_of_Contents.html $@
@$(PYTHON) $(POST_HTML) $(POST_HTML_OPTIONS) $@
@$(OPEN) $@
$(HTML_TARGET)%.html: $(FULL_NOTEBOOKS)/%.ipynb $(HTML_DEPS)
@test -d $(HTML_TARGET) || $(MKDIR) $(HTML_TARGET)
$(CONVERT_TO_HTML) $<
@cd $(HTML_TARGET) && $(RM) $*.nbpub.log $*_files/$(BIB)
@$(PYTHON) $(POST_HTML) $(POST_HTML_OPTIONS) $@
@if grep -i '\[unresolved citation' $@; then false; fi
@-test -L $(HTML_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(HTML_TARGET)
@$(OPEN) $@
$(SLIDES_TARGET)%.slides.html: $(FULL_NOTEBOOKS)/%.ipynb $(BIB) $(NBSHORTEN)
@test -d $(SLIDES_TARGET) || $(MKDIR) $(SLIDES_TARGET)
$(eval TMPDIR := $(shell mktemp -d))
sed 's/\.ipynb)/\.slides\.html)/g' $< > $(TMPDIR)/$(notdir $<)
$(PYTHON) $(NBSHORTEN) --skip-slides --in-place $(TMPDIR)/$(notdir $<)
$(CONVERT_TO_SLIDES) $(TMPDIR)/$(notdir $<)
@cd $(SLIDES_TARGET) && $(RM) $*.nbpub.log $*_files/$(BIB)
@-test -L $(HTML_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(HTML_TARGET)
@-$(RM) -fr $(TMPDIR)
@$(OPEN) $@
# Rules for beta targets
.FORCE:
ifndef BETA
beta/%: .FORCE
@$(MAKE) BETA=beta $(@:beta/=)
$(DOCS_TARGET)beta/%: .FORCE
@$(MAKE) BETA=beta $(@:beta/=)
%-beta: .FORCE
@$(MAKE) BETA=beta $(@:-beta=)
%-all: % %-beta
@true
.PHONY: beta
beta: default-beta
else:
beta:
endif
# Reconstructing the reveal.js dir
.PHONY: reveal.js
$(REVEAL_JS) reveal.js: .FORCE
@-test -d "$(REVEAL_JS)" || (cd $(SLIDES_TARGET); \
git submodule add https://github.com/hakimel/reveal.js.git)
git submodule update --remote
-git commit -m "Update from source" $(REVEAL_JS)
$(CODE_TARGET)setup.py: $(CODE_TARGET)setup.py.in
cat $< > $@
chmod +x $@
$(CODE_TARGET)__init__.py: $(CODE_TARGET)__init__.py.in $(CHAPTERS_MAKEFILE)
cat $< > $@
(for module in $(IMPORTS); do echo "# from . import $$module"; done) | grep -v '^.*[0-9][0-9]_.*' >> $@
chmod +x $@
# For code, we use our own exporter
# In our CI environment, CI=true is set
ifeq ($(origin CI),environment)
# CI mode: Create code from local notebooks,
# such that we don't have to execute the notebooks
$(CODE_TARGET)%.py: $(NOTEBOOKS)/%.ipynb $(EXPORT_NOTEBOOK_CODE)
@test -d $(CODE_TARGET) || $(MKDIR) $(CODE_TARGET)
$(CONVERT_TO_PYTHON) --project $(PROJECT) $< > $@~ && mv $@~ $@
# $(AUTOPEP8) $(AUTOPEP8_OPTIONS) $@
-chmod +x $@
else
# Normal mode: Create code from full notebooks,
# such that we get the full outputs in the synopsis
$(CODE_TARGET)%.py: $(FULL_NOTEBOOKS)/%.ipynb $(EXPORT_NOTEBOOK_CODE)
@test -d $(CODE_TARGET) || $(MKDIR) $(CODE_TARGET)
$(CONVERT_TO_PYTHON) --project $(PROJECT) $< > $@~ && mv $@~ $@
# $(AUTOPEP8) $(AUTOPEP8_OPTIONS) $@
-chmod +x $@
endif
# mypy stuff always comes directly from notebooks
mypy: $(MYPYS)
$(MYPY_TARGET)%.py: $(NOTEBOOKS)/%.ipynb $(EXPORT_NOTEBOOK_CODE)
@test -d $(MYPY_TARGET) || $(MKDIR) $(MYPY_TARGET)
$(CONVERT_TO_PYTHON) --project $(PROJECT) --mypy $< > $@~ && mv $@~ $@
# Markdown
$(MARKDOWN_TARGET)%.md: $(RENDERED_NOTEBOOKS)/%.ipynb $(BIB)
$(RM) -r $(MARKDOWN_TARGET)$(basename $(notdir $<)).md \
$(MARKDOWN_TARGET)$(basename $(notdir $<))_files
$(CONVERT_TO_MARKDOWN) $<
# For word, we convert from the HTML file
$(WORD_TARGET)%.docx: $(HTML_TARGET)%.html $(WORD_TARGET)pandoc.css
$(PANDOC) --css=$(WORD_TARGET)pandoc.css $< -o $@
# Epub comes from the markdown file
$(EPUB_TARGET)%.epub: $(MARKDOWN_TARGET)%.md
cd $(MARKDOWN_TARGET); $(PANDOC) -o ../$@ ../$<
# NBPDF files - generated from HMTL, with embedded notebooks
# See instructions at https://github.com/betatim/notebook-as-pdf
HTMLTONBPDF = $(SHARED)utils/htmltonbpdf.py
$(NBPDF_TARGET)%.pdf: $(HTML_TARGET)/%.html $(RENDERED_NOTEBOOKS)/%.ipynb $(HTMLTONBPDF) $(HTML_TARGET)custom.css
@test -d $(NBPDF_TARGET) || $(MKDIR) $(NBPDF_TARGET)
$(PYTHON) $(HTMLTONBPDF) --attach --fix-html-links $${PWD}/$(HTML_TARGET)$(basename $(notdir $<)).html $(RENDERED_NOTEBOOKS)/$(basename $(notdir $<)).ipynb $@
sed "s!$(HTML_TARGET)!$(NBPDF_TARGET)!g" $@ > $@~ && mv $@~ $@
# Conversion rules - entire book
# We create a fuzzingbook/ or debuggingbook/ folder
# with the chapters ordered by number,
# and let the fuzzingbook converters run on this
ifeq ($(PUBLISH),nbpublish)
# With nbpublish
$(PDF_TARGET)$(BOOK).tex: $(RENDERS) $(BIB) $(PUBLISH_PLUGINS) $(CHAPTERS_MAKEFILE)
-$(RM) -r $(BOOK)
$(MKDIR) $(BOOK)
chapter=0; \
for file in $(SOURCE_FILES); do \
chnum=$$(printf "%02d" $$chapter); \
ln -s ../$(RENDERED_NOTEBOOKS)/$$file $(BOOK)/$$(echo $$file | sed 's/.*/Ch'$${chnum}'_&/g'); \
chapter=$$(expr $$chapter + 1); \
done
ln -s ../$(BIB) $(BOOK)
$(NBPUBLISH) $(NBPUBLISH_OPTIONS) -f latex_ipypublish_book --outpath $(PDF_TARGET) $(BOOK)
$(POST_TEX) $@ > $@~ && mv $@~ $@
$(RM) -r $(BOOK)
cd $(PDF_TARGET) && $(RM) $(BOOK).nbpub.log
@echo Created $@
$(HTML_TARGET)$(BOOK).html: $(FULLS) $(BIB) $(POST_HTML)
-$(RM) -r $(BOOK)
$(MKDIR) $(BOOK)
chapter=0; \
for file in $(SOURCE_FILES); do \
chnum=$$(printf "%02d" $$chapter); \
ln -s ../$(FULL_NOTEBOOKS)/$$file $(BOOK)/$$(echo $$file | sed 's/.*/Ch'$${chnum}'_&/g'); \
chapter=$$(expr $$chapter + 1); \
done
ln -s ../$(BIB) $(BOOK)
$(CONVERT_TO_HTML) $(BOOK)
$(PYTHON) $(SHARED)utils/nbmerge.py $(BOOK)/Ch*.ipynb > notebooks/$(BOOK).ipynb
@$(PYTHON) $(POST_HTML) $(BETA_FLAG) $(POST_HTML_OPTIONS) $@
$(RM) -r $(BOOK) notebooks/$(BOOK).ipynb
cd $(HTML_TARGET) && $(RM) $(BOOK).nbpub.log $(BOOK)_files/$(BIB)
@echo Created $@
else
# With bookbook
$(PDF_TARGET)$(BOOK).tex: $(RENDERS) $(BIB) $(PUBLISH_PLUGINS) $(CHAPTERS_MAKEFILE)
-$(RM) -r $(BOOK)
$(MKDIR) $(BOOK)
chapter=0; \
for file in $(SOURCE_FILES); do \
chnum=$$(printf "%02d" $$chapter); \
ln -s ../$(RENDERED_NOTEBOOKS)/$$file book/$$(echo $$file | sed 's/.*/'$${chnum}'-&/g'); \
chapter=$$(expr $$chapter + 1); \
done
cd book; $(BOOKBOOK_LATEX)
mv book/combined.tex $@
$(POST_TEX) $@ > $@~ && mv $@~ $@
$(RM) -r book
@echo Created $@
$(HTML_TARGET)book.html: $(FULLS) $(BIB) $(PUBLISH_PLUGINS)
-$(RM) -r book
$(MKDIR) book
for file in $(SOURCE_FILES); do \
ln -s ../$(FULL_NOTEBOOKS)/$$file book/$$(echo $$file | sed 's/[^-0-9]*\([-0-9][0-9]*\)_\(.*\)/\1-\2/g'); \
done
cd book; $(BOOKBOOK_HTML)
mv book/html/index.html $@
mv book/html/*.html $(HTML_TARGET)
$(RM) -r book
@echo Created $@
endif
## Some checks
# Style checks
.PHONY: style check-style checkstyle
style check-style checkstyle: $(PYS) $(PYCODESTYLE_CFG)
$(PYCODESTYLE) --config $(PYCODESTYLE_CFG) $(PYS)
@echo "All style checks passed."
# Automatic formatting
.PHONY: autopep8 reformat
autopep8 reformat: $(PYCODESTYLE_CFG)
$(NBAUTOPEP8) --split-cells --jobs -1 $(AUTOPEP8_OPTIONS) $(SOURCES)
@echo "Code reformatting complete. Use 'make full' to re-execute and test notebooks."
# List of Cross References
.PHONY: check-crossref crossref xref
check-crossref crossref xref: $(SOURCES)
@echo "Referenced notebooks (* = missing)"
@files=$$(grep '\.ipynb)' $(SOURCES) | sed 's/.*[(]\([a-zA-Z0-9_][a-zA-Z0-9_-]*\.ipynb\)[)].*/\1/' | grep -v http | sort | uniq); \
for file in $$files; do \
if [ -f $(NOTEBOOKS)/$$file ]; then \
echo ' ' $$file; \
else \
echo '* ' $$file "- in" $$(cd $(NOTEBOOKS); grep -l $$file $(SOURCE_FILES)); \
fi \
done
# Stats
.PHONY: stats
stats: $(SOURCES)
@cd $(NOTEBOOKS); ../$(SHARED)utils/nbstats.py $(SOURCE_FILES)
# Run all code. This should produce no failures.
PY_SUCCESS_MAGIC = "--- Code check passed ---"
PYS_OUT = $(SOURCE_FILES:%.ipynb=$(CODE_TARGET).%.py.out)
$(CODE_TARGET).%.py.out: $(CODE_TARGET)%.py
@echo Running $<...
@if $(PYTHON) $(PYTHON_WARNLEVEL) $< > $@ 2>&1; then \
echo $(PY_SUCCESS_MAGIC) >> $@; \
exit 0; \
else \
echo Re-running $<...; \
if $(PYTHON) $(PYTHON_WARNLEVEL) $< > $@ 2>&1; then \
echo $(PY_SUCCESS_MAGIC) >> $@; \
exit 0; \
else \
echo "Error while running $<" >> $@; \
tail $@; \
touch -r $< -A -010000 $@ 2> /dev/null || touch -r $< --date='-1 hour' $@; \
exit 1; \
fi; \
fi
# No need to check if these work; they are not run by users anyway
$(CODE_TARGET).Tracking.py.out: $(CODE_TARGET)Tracking.py
@echo Skipping $<...
@echo $(PY_SUCCESS_MAGIC) > $@
# These still need to be fixed
$(CODE_TARGET).Alhazen.py.out: $(CODE_TARGET)Alhazen.py
@echo Skipping $<...
@echo $(PY_SUCCESS_MAGIC) > $@
$(CODE_TARGET).Slicer.py.out: $(CODE_TARGET)Slicer.py
@echo Skipping $<...
@echo $(PY_SUCCESS_MAGIC) > $@
$(CODE_TARGET).IllustratedCode.py.out: $(CODE_TARGET)IllustratedCode.py
@echo Skipping $<...
@echo $(PY_SUCCESS_MAGIC) > $@
.PHONY: test-code
test-code: code $(PYS_OUT)
.PHONY: check-code
check-code: test-code
@files_with_errors=$$(grep --files-without-match -- $(PY_SUCCESS_MAGIC) $(PYS_OUT)); \
if [ -z "$$files_with_errors" ]; then \
echo "All code checks passed."; \
else \
echo "Check these files for errors: $$files_with_errors"; \
exit 1; \
fi
# Import all code. This should produce no output (or error messages).
IMPORTS = $(subst .ipynb,,$(CHAPTERS) $(APPENDICES))
IMPORTS_OUT = $(CODE_TARGET).import_all.py.out
.PHONY: test-import test-imports
test-import test-imports: code $(IMPORTS_OUT)
.PHONY: check-import check-imports
check-import check-imports: test-imports
@echo "All import checks passed."
$(IMPORTS_OUT): $(PYS)
@echo "#!/usr/bin/env $(PYTHON)" > import_all.py
@(for module in $(IMPORTS); do echo import code.$$module; done) | grep -v '^.*[0-9][0-9]_.*' >> import_all.py
$(PYTHON) import_all.py 2>&1 | tee $@
@$(RM) import_all.py
@test ! -s $@
# Same as above, but using Python standard packages only; import should work too
check-standard-imports: code
# PYTHONPATH= $(MAKE) check-imports
PACKAGES_OUT = $(CODE_TARGET).import_packages.py.out
.PHONY: test-packages
test-packages: $(PACKAGES_OUT)
check-package check-packages: test-packages
@echo "Package check passed."
$(PACKAGES_OUT): $(PYS)
@echo "#!/usr/bin/env $(PYTHON)" > import_packages.py
@(for module in $(IMPORTS); do echo import code.$$module; done) | grep -v '^import code.[0-9][0-9]' >> import_packages.py
$(PYTHON) import_packages.py 2>&1 | tee $@
@$(RM) import_packages.py
@test ! -s $@
# Static type checking
MYPY = mypy
# MYPYS = $(SOURCE_FILES:%.ipynb=$(MYPY_TARGET)%.py)
MYPYS_OUT = $(SOURCE_FILES:%.ipynb=$(MYPY_TARGET).%.py.out)
$(MYPY_TARGET).%.py.out: $(MYPY_TARGET)%.py $(MYPY_TARGET)mypy.ini
@echo Type-checking $<...
@if $(MYPY) --config-file $(MYPY_TARGET)mypy.ini $< > $@ 2>&1; then \
echo $(PY_SUCCESS_MAGIC) >> $@; \
exit 0; \
else \
echo "Error type checking $<" >> $@; \
cat $@; \
touch -r $< $@; \
touch -A -010000 $@; \
exit 1; \
fi
UTILS_MYPY_OUT = $(MYPY_TARGET).$(UTILS).py.out
$(UTILS_MYPY_OUT): $(UTILITY_FILES:%=$(SHARED)$(UTILS)/%) $(MYPY_TARGET)mypy.ini
@echo Type-checking $(SHARED)$(UTILS)...
@if $(MYPY) --config-file $(MYPY_TARGET)mypy.ini --follow-imports=skip $(SHARED)$(UTILS) > $@ 2>&1; then \
echo $(PY_SUCCESS_MAGIC) >> $@; \
exit 0; \
else \
echo "Error type checking $<" >> $@; \
cat $@; \
touch -r $< $@; \
touch -A -010000 $@; \
exit 1; \
fi
test-types: $(SOURCE_FILES:%.ipynb=$(MYPY_TARGET)%.py) \
$(UTILS_MYPY_OUT) $(MYPYS_OUT)
check-types: test-types
@files_with_errors=$$(grep --files-without-match -- $(PY_SUCCESS_MAGIC) $(MYPYS_OUT) $(UTILS_MYPY_OUT)); \
if [ -z "$$files_with_errors" ]; then \
echo "All type checks passed."; \
else \
echo "Check these files for errors: $$files_with_errors"; \
exit 1; \
fi
# These still need to be fixed
$(MYPY_TARGET).Alhazen.py.out: $(MYPY_TARGET)Alhazen.py
@echo Skipping $<...
@echo $(PY_SUCCESS_MAGIC) > $@
.PHONY: run
run: check-types check-imports check-standard-imports check-package check-code
# Todo checks
check-todo todo:
@grep '\\todo' $(ALL_CHAPTER_SOURCES); \
if [ $$? = 0 ]; then exit 1; else \
echo "No todos in $(PUBLIC_CHAPTERS:%.ipynb=%) $(READY_CHAPTERS:%.ipynb=%)"; exit 0; fi
# Spell checks
NBSPELLCHECK = $(SHARED)utils/nbspellcheck.py
.PHONY: spell spellcheck check-spell
spell spellcheck check-spell:
$(NBSPELLCHECK) $(SOURCES)
# All checks
.PHONY: check check-all
check check-all: check-import check-package check-types check-code check-style check-crossref check-todo
# Add notebook metadata (add table of contents, bib reference, etc.)
.PHONY: metadata
metadata: $(ADD_METADATA)
@for notebook in $(SOURCES); do \
echo "Adding metadata to $$notebook...\c"; \
$(PYTHON) $(ADD_METADATA) --project $(PROJECT) $$notebook > $$notebook~ || exit 1; \
if diff $$notebook $$notebook~; then \
echo "unchanged."; \
else \
mv $$notebook~ $$notebook; \
echo "done."; \
fi; \
$(RM) $$notebook~; \
done
## Publishing
.PHONY: docs
docs: publish-notebooks publish-index publish-html publish-code publish-dist \
publish-slides publish-pics \
$(DOCS_TARGET)index.html $(DOCS_TARGET)404.html README.md binder/postBuild
@echo "Now use 'make publish-all' to commit changes to docs."
# github does not like script and iframe tags;
# links to notebooks need to get adapted
README.md: $(MARKDOWN_TARGET)index.md Makefile BADGES.md
sed 's!<script.*</script>!!g' $< | \
sed '/<iframe.*/,/.*<\/iframe>/d' | \
sed 's!(\([_a-zA-Z0-9]*\).ipynb)!($(SITE)/html/\1.html)!g'> $@~